sp|Q338N2|C3H62_ORYSJ ----> Zinc finger CCCH domain-containing protein 62
Intron 1 GTGAATATAC ... TCAAATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 24.89 | 66.4 | 22 | 0 |
| A2 | 25.74 | 60.6 | 21 | 0 |
| A3 | 20.37 | 86 | 22 | 0 |
| A4 | 29.25 | 48.4 | 20 | 1 |
| A5 | 36.36 | 28 | 16 | 0 |
| A6 | 22.52 | 99.8 | 29 | 0 |
| A7 | 27.9 | 188.6 | 73 | 0 |
| A8 | 25.98 | 148.2 | 52 | 0 |
| A9 | 27.7 | 206.2 | 79 | 0 |
| A10 | 28.25 | 228.6 | 90 | 0 |
>TRINITY_DN97387_c0_g1_i8 from sample A4 / Example spliced isoformGGGCGGAAGTGAGAGAGGGATATCGCAGCAAAGAAGGTCCAAGTGTTCGAACCTCTAGAAGGCTCATTGGCTCTACAACTTCTTCAGCCATGGAAGCCCTTGATCCCCGTGTAGATCAATCCGATTCCGATTCTGAGGAAGAGGACCAGAGCGAGGATCCATCATTTGAATTGCCCCAAGGTCAAATCTCCGACGACGAT
GAAAGCAATGATGGTGTTCTGGAAGACCCAGATGTGCAAACATCAGCTTTAAATAACAAGGATGAGAAGACATATTTGGAGGTTGAAAAGCTCATCGAAGGTGGTAAGCTTGAAAAACTGAAAGTGGATCAGTGCAAGCTTTACCTGCGAAAGCATGGTCTAAGAATAACAGGTCGAAAGTCAGTTCTTCTTGAACGAAT
TCAGGAGCACATTGAAATAAAGGATGGCAGTGGCGAAGAAAAGTACCCAAAATCCAGTTTTGTGCTGAATTGTAAAGGTGATGCATGCACCGGGGATATTGTTATGTTTGAGCAAAATGTCTATGACATGTATAATATTGCTGCAAGAAGTTCTGGAGGTCCTTCTATTGGCACTCGTACTGTTGCAGGACGGATTATAA
AGGAGAGCTACGGTGCAGCCAAACAGCAACACACTTTTACGATTGAAGTTCTATGGAGCAAAGGTGAGAAGCCATTGCTTCCATTACGATCACTTCTTATAAAAGGACGGAACCTTTACCGATTAAAAACAGCACGTCAGCCATGGCCTAATGAAGAAGATAGGAGGAAATCGCTTCAAGAGAAGCATGATAGAGGATCT
CTTGCCCGTCAAATGAGAGATTTGAGGGTCCAAAACAAGGACGTTGGCAGGCCGCGTCACGTCAACAAGCGCAAACAAAAAGATACTGTTTCAGTCTCAAGTAAAATTGTCCATAATGACTCAGACAAGAAATCATCCCAGTCTGATCAGAGATACGATGTCACATCCTTGCCAATGCATGAACTGAAGATTGACGACAA
TATACAGAAACAGTTACCCGTGCAAAATCAGGGGAATTTGAATTTCATGAATCATGGAGTTCATAAGGGTATTGGACTCTTTCAAAATCCCAACAAGAATCAATCCGCATATGCAGCCTATAACTATGCTGGAAATTCTAAGACATATTCAAATAACATTCCTTCAGCTGCAGGCACCAGTGGCACAGATTATGGTCTCT
TTATAACATCCGGCAAAGGATTGATAGGACATACAAGGCCCATGTCAGGCTTATCTGACATGGGACTTGGACATACAAGGCCCATGTCAGGCTTCTATGACATGGGCCTTGGACATACAAGGCCCATGCCAGGCTTCTCTGACATGGGACTTCCAGCTCAGCACACTGGACCACAGCACACTGTATCACAGCGTGAACCA
TGTATGCACTTTCGGAAGGGAAGATGTACTTTTGGTGACCGGTGTAAGTTTTCCCATGCTGTCAATTACAATTACAACCTAAACCATCAACTGGTCCGTAACAAAGAAAATTATCAACCACACAGATATGATTGAAAGGTATTGGTGTTACCTCTTATCCAAATGCAGTTGCAGGCATTAGTCCAATGGCTATTTTGAGT
TTTGCTATGTATGTAAGCAAGCAATTGGTTAATTTATCAATAGAGAGAAAGGAGTGGAGATATTAAAGCCGTAGAAATTAAGGTAAAGCCAGGGTTCAAAGGTCCACCCCAATTGGTTATAAATAATCAAATCTGTTTGCTGTGTATTCAATTGTCAGATTGAATCTTTTTGCCGAGAATTCAATTGTCTAATCGAATCT
GTTTGCTGAGTATTCAATTGCCAGATTGAATCTGTTTGCTGATAATTCAATTGTCA
>TRINITY_DN97387_c0_g1_i5 from sample A4 / Example unspliced isoform:GGGCGGAAGTGAGAGAGGGATATCGCAGCAAAGAAGGTCCAAGTGTTCGAACCTCTAGAAGGCTCATTGGCTCTACAACTTCTTCAGCCATGGAAGCCCTTGATCCCCGTGTAGATCAATCCGATTCCGATTCTGAGGAAGAGGACCAGAGCGAGGATCCATCATTTGAATTGCCCCAAGGTCAAATCTCCGACGACGAT
GAAAGCAATGATGGTGTTCTGGAAGACCCAGATGTGCAAACATCAGCTTTAAATAACAAGGATGAGAAGACATATTTGGAGGTTGAAAAGCTCATCGAAGGTGGTAAGCTTGAAAAACTGAAAGTGGATCAGTGCAAGCTTTACCTGCGAAAGCATGGTCTAAGAATAACAGGTCGAAAGTCAGTTCTTCTTGAACGAAT
TCAGGAGCACATTGAAATAAAGGATGGCAGTGGCGAAGAAAAGTACCCAAAATCCAGTTTTGTGCTGAATTGTAAAGGTGATGCATGCACCGGGGATATTGTTATGTTTGAGCAAAATGTCTATGACATGTATAATATTGCTGCAAGAAGTTCTGGAGGTCCTTCTATTGGCACTCGTACTGTTGCAGGACGGATTATAA
AGGAGAGCTACGGTGCAGCCAAACAGCAACACACTTTTACGATTGAAGTTCTATGGAGCAAAGGTGAGAAGCCATTGCTTCCATTACGATCACTTCTTATAAAAGGACGGAACCTTTACCGATTAAAAACAGCACGTCAGgtgaatatactttctttttctaaagtttgtggactgtggcgattccaattttatccattg
ctgattgaaaattgctcaaatgcagCCATGGCCTA
Intron 2 GTAAGAAAGT ... CGATTTTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 23.86 | 78.3 | 13 | 25.1 |
| A2 | 20.36 | 86 | 1 | 21.9 |
| A3 | 21.28 | 78.7 | 4.4 | 21.8 |
| A4 | 23.95 | 47.5 | 4 | 15.6 |
| A5 | 29.67 | 34.3 | 0 | 14.4 |
| A6 | 23.16 | 98.8 | 0 | 30.1 |
| A7 | 15.13 | 322.3 | 0.5 | 58.2 |
| A8 | 21.93 | 129.5 | 5.1 | 37.1 |
| A9 | 18.65 | 228.9 | 6.1 | 52.7 |
| A10 | 19.04 | 293.5 | 0 | 70.5 |
>TRINITY_DN111831_c0_g3_i6 from sample A1 / Example spliced isoformAATTATTAGCTTGAGCGGAAGTGAGAGAGGGATATCGCAGCAAAGAAGGTCCAAGTGTTCGAACCTCTAGAAGGCTCATTGGCTCTACAACTTCTTCAGCCATGGAAGCCCTTGATCCCCGTGTAGATCAATCCGATTCCGATTCTGAGGAAGAGGACCAGAGCGAGGATCCATCATTTGAATTGCCCCAAGGTCAAATC
TCCGACGACGATGAAAGCAATGATGGTGTTCTGGAAGACCCAGATGTGCAAACATCAGCTTTAAATAACAAGGATGAGAAGACATATTTGGAGGTTGAAAAGCTCATCGAAGGTGGTAAGCTTGAAAAACTGAAAGTGGATCAGTGCAAGCTTTACCTGCGAAAGCATGGTCTAAGAATAACAGGTCGAAAGTCAGTTCT
TCTTGAACGAATTCAGGAGCACATTGAAATAAAGGATGGCAGTGGCGAAGAAAAGTACCCAAAATCCAGTTTTGTGCTGAATTGTAAAGGTGATGCATGCACCGGGGATATTGTTATGTTTGAGCAAAATGTCTATGACATGTATAATATTGCTGCAAGAAGTTCTGGAGGTCCTTCTATTGGCACTCGTACTGTTGCAG
GACGGATTATAAAGGAGAGCTACGGTGCAGCCAAACAGCAACACACTTTTACGATTGAAGTTCTATGGAGCAAAGGTGAGAAGCCATTGCTTCCATTACGATCACTTCTTATAAAAGGACGGAACCTTTACCGATTAAAAACAGCACGTCAGCCATGGCCTAATGAAGAAGATAGGAGGAAATCGCTTCAAGAGAAGCAT
GATAGAGGATCTCTTGCCCGTCAAATGAGAGATTTGAGGGTCCAAAACAAGGACGTTGGCAGGCCGCGTCACGTCAACAAGCGCAAACAAAAAGATACTGTTTCAGTCTCAAGTAAAATTGTCCATAATGACTCAGACAAGAAATCATCCCAGTCTGATCAGAGATACGATGTCACATCCTTGCCAATGCATGAACTGAA
GATTGACGACAATATACAGAAACAGTTACCCGTGCAAAATCAGGGGAATTTGAATTTCATGAATCATGGAGTTCATAAGGGTATTGGACTCTTTCAAAATCCCAACAAGAATCAATCCGCATATGCAGCCTATAACTATGCTGGAAATTCTAAGACATATTCAAATAACATTCCTTCAGCTGCAGGCACCAGTGGCACAG
ATTATGGTCTCTTTATAACATCCGGCAAAGGATTGATAGGACATACAAGGCCCATGTCAGGCTTATCTGACATGGGACTTGGACATACAAGGCCCATGTCAGGCTTCTATGACATGGGCCTTGGACATACAAGGCCCATGCCAGGCTTCTCTGACATGGGACTTCCAGCTCAGCACACTGGACCACAGCACACTGTATCA
CAGCGTGAACCATGTATGCACTTTCGGAAGGGAAGATGTACTTTTGGTGACCGGTGTAAGTTTTCCCATGCTGTCAATTACAATTACAACCTAAACCATCAACTGGTCCGTAACAAAGAAAATTATCAACCACACAGATATGATTGAAAGGTATTGGTGTTACCTCTTATCCAAATGCAGTTGCAGGCATTAGTCCAATG
GCTATTTTGAGTTTTGCTATGTATGTAAGCAAGCAATTGGTTAATTTATCAATAGAGAGAAAGGAGTGGAGATATTAAAGCCGTAGAAATTAAGGTAAAGCCAGGGTTCAAAGGTCCACCCCAATTGGTTATAAATAATCAAATCTGTTTGCTGTGTATTCAATTGTCAGATTGAATCTTTTTGCCGAGAATTCAATTGT
CTAATCGAATCTGTTTGCTGAGTATTCAATTGCCAGATTGAATCTGTTTGCTGATAATTCAATTGTCAAATCGAATCTGT
>TRINITY_DN111831_c0_g3_i1 from sample A1 / Example unspliced isoform:CTTCTGAGCTGAATAACTTATATTTTTCCTATCATTTTGATGGAAGGTTCACATTGTTGCTTATATGTTTCCAGGTGATGCATGCACCGGGGATATTGTTATGTTTGAGCAAAATGTCTATGACATgtaagaaagtcttctgagctgaataacttatgctgctattctttctgttaaagtgcacaatagaattgctattt
gtcagttagccacttatatttttggccaattacgatttttagGTATAATATTGCTGCAAGAAGTTCTGGAGGTCCTTCTATTGGCACTCGTACTGTTGCAGGACGGATTATAAAGGAGAGCTACGGTGCAGCCAAACAGCAACACACTTTTACGATTGAAGTTCTATGGAGCAAAGGTGAGAAGCCATTGCTTCCATTAC
GATCACTTCTTATAAAAGGACGGAACCTTTACCGATTAAAAACAGCACGTCAGCCATGGCCTAATGAAGAAGATAGGAGGAAATCGCTTCAAGAGAAGCATGATAGAGGATCTCTTGCCCGTCAAATGAGAGATTTGAGGGTCCAAAACAAGGACGTTGGCAGGCCGCGTCACGTCAACAAGCGCAAACAAAAAGATACT
GTTTCAGTCTCAAGTAAAATTGTCCATAATGACTCAGACAAGAAATCATCCCAGTCTGATCAGAGATACGATGTCACATCCTTGCCAATGCATGAACTGAAGATTGACGACAATATACAGAAACAGTTACCCGTGCAAAATCAGGGGAATTTGAATTTCATGAATCATGGAGTTCATAAGGGTATTGGACTCTTTCAAAA
TCCCAACAAGAATCAATCCGCATATGCAGCCTATAACTATGCTGGAAATTCTAAGACATATTCAAATAACATTCCTTCAGCTGCAGGCACCAGTGGCACAGATTATGGTCTCTTTATAACATCCGGCAAAGGATTGATAGGACATACAAGGCCCATGTCAGGCTTATCTGACATGGGACTTGGACATACAAGGCCCATGT
CAGGCTTCTATGACATGGGCCTTGGACATACAAGGCCCATGCCAGGCTTCTCTGACATGGGACTTCCAGCTCAGCACACTGGACCACAGCACACTGTATCACAGCGTGAACCATGTATGCACTTTCGGAAGGGAAGATGTACTTTTGGTGACCGGTGTAAGTTTTCCCATGCTGTCAATTACAATTACAACCTAAACCAT
CAACTGGTCCGTAACAAAGAAAATTATCAACCACACAGATATGATTGAAAGGTATTGGTGTTACCTCTTATCCAAATGCAGTTGCAGGCATTAGTCCAATGGCTATTTTGAGTTTTGCTATGTATGTAAGCAAGCAATTGGTTAATTTATCAATAGAGAGAAAGGAGTGGAGATATTAAAGCCGTAGAAATTAAGGTAAA
GCCAGGGTTCAAAGGTCCACCCCAATTGGTTATAAATAATCAAATCTGTTTGCTGTGTATTCAATTGTCAGATTGAATCTTTTTGCCGAGAATTCAATTGTCTAATCGAATCTGTTTGCTGAGTATTCAATTGCCAGATTGAATCTGTTTGCTGATAATTCAATTGTCAAATCGAATCTGT
Intron 3 GTAGAAGTTA ... AATATGACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 62.5 | 9 | 12 | 15 |
| A2 | 54.55 | 10 | 4 | 12 |
| A3 | 50 | 11 | 6 | 11 |
| A4 | 62.96 | 10 | 8 | 17 |
| A5 | 100 | 0 | 0 | 4 |
| A6 | 50 | 3 | 4 | 3 |
| A7 | 51.35 | 18 | 0 | 19 |
| A8 | 60 | 6 | 1 | 9 |
| A9 | 48.94 | 24 | 0 | 23 |
| A10 | 50 | 8 | 5 | 8 |
>TRINITY_DN97387_c0_g1_i7 from sample A4 / Example spliced isoformGGGCGGAAGTGAGAGAGGGATATCGCAGCAAAGAAGGTCCAAGTGTTCGAACCTCTAGAAGGCTCATTGGCTCTACAACTTCTTCAGCCATGGAAGCCCTTGATCCCCGTGTAGATCAATCCGATTCCGATTCTGAGGAAGAGGACCAGAGCGAGGATCCATCATTTGAATTGCCCCAAGGTCAAATCTCCGACGAGTAA
GTGATTTCTAATTTACTTGTATTTTGCTTGATAGGACTTGAACCAGAGCATATTTTTTAAAATCTAGAAGGTTTGGTTTCTTTGAAAAATAAACATTGTATCGAGTATTTATTGCCTAGGCTTACAGGATCCTGCATTTTCATAATTTTCATCCTGTATTTTTATTGTCGTTATAGCTTTTAGGTTAGGTTAGGGTAGGT
TTGGTTTTGCTCTGTTCAAGTTATTGGGAAGGGTATTGGAACGAGGTTTATTTTCCTAAGAAAAACAGAGGATGTGGGCAATCTATCCTGTTGCCATATAAAAATGCATTGCATTGCGCTTTCTGCACTTAACTACATTTTCTTTATCGTCCACCACCTATTGGTTCAATGGCAAGTTTGGGGGGCTTTCCAAGAGGAGA
GCACCCAGTATCGAATTTATGGATACCTTCAGCCCGTCAATCTCTACACCAATAATTGGAGAAGTGCGATGAAAGCAATGATGGTGTTCTGGAAGACCCAGATGTGCAAACATCAGCTTTAAATAACAAGGATGAGAAGACATATTTGGAGGTTGAAAAGCTCATCGAAGGTGGTAAGCTTGAAAAACTGAAAGTGGATC
AGTGCAAGCTTTACCTGCGAAAGCATGGTCTAAGAATAACAGGTCGAAAGTCAGTTCTTCTTGAACGAATTCAGGAGCACATTGAAATAAAGGATGGCAGTGGCGAAGAAAAGTACCCAAAATCCAGTTTTGTGCTGAATTGTAA
>TRINITY_DN97387_c0_g1_i9 from sample A4 / Example unspliced isoform:GGGCGGAAGTGAGAGAGGGATATCGCAGCAAAGAAGGTCCAAGTGTTCGAACCTCTAGAAGGCTCATTGGCTCTACAACTTCTTCAGCCATGGAAGCCCTTGATCCCCGTGTAGATCAATCCGATTCCGATTCTGAGGAAGAGGACCAGAGCGAGGATCCATCATTTGAATTGCCCCAAGGTCAAATCTCCGACGAGTAA
GTGATTTCTAATTTACTTGTATTTTGCTTGATAGGACTTGAACCAGAGCATATTTTTTAAAATCTAGAAGGTTTGGTTTCTTTGAAAAATAAACATTGTATCGAGTATTTATTGCCTAGGCTTACAGGATCCTGCATTTTCATAATTTTCATCCTGTATTTTTATTGTCGTTATAGCTTTTAGGTTAGGTTAGGGTAGGT
TTGGTTTTGCTCTGTTCAAGTTATTGGGAAGGGTATTGGAACGAGGTTTATTTTCCTAAGAAAAACAGAGGATGTGGGCAATCTATCCTGTTGCCATATAAAAATGCATTGCATTGCGCTTTCTGCACTTAACTACATTTTCTTTATCGTCCACCACCTATTGGTTCAATGGCAAGTTTGGGGGGCTTTCCAAGAGGAGA
GCACCCAGTATCGAATTTATGGATACCTTCAGCCCGTCAATCTCTACACCAATAATTGGAGAAGTGgtagaagttactgattgccttgtatccctagaattcgatgttactctgctatctttgctatctttcgtatttcttatagttggttaatttattctacattctttgacaaaaccctagaaaattgctccctcctt
gagcctgtcttatttgtattttatttggcatttaatacacctgtcctgtccagcacatctagcaaatatacggacatatctgcatgtatgatgatattttttgatctgatgggaattgtttctatcctgctctgttaatatgacagCGATGAAAGCAATGATGGTGTTCTGGAAGACCCAGATGTGCAAACATCAGCTTT
AAATAACAAGGATGAGAAGACATATTTGGAGGTTGAAAAGCTCATCGAAGGTGGTAAGCTTGAAAAACTGAAAGTGGATCAGTGCAAGCTTTACCTGCGAAAGCATGGTCTAAGAATAACAGGTCGAAAGTCAGTTCTTCTTGAACGAATTCAGGAGCACATTGAAATAAAGGATGGCAGTGGCGAAGAAAAGTACCCAA
AATCCAGTTTTGTGCTGAATTGTAA
Intron 4 GTGGGAGCAA ... ATGTTTCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 23.68 | 31 | 10.3 | 13.5 |
| A2 | 22.69 | 70 | 23.7 | 10.5 |
| A3 | 19.74 | 52.3 | 14.3 | 14 |
| A4 | 24.76 | 44 | 17.3 | 4 |
| A5 | 27.7 | 16 | 6.7 | 0 |
| A6 | 15.4 | 46 | 9 | 8 |
| A7 | 14.32 | 170.3 | 30.7 | 35 |
| A8 | 18.71 | 100 | 26 | 18 |
| A9 | 16.47 | 155 | 33.7 | 24.5 |
| A10 | 14.66 | 149 | 28 | 28 |
>TRINITY_DN111831_c0_g3_i6 from sample A1 / Example spliced isoformAATTATTAGCTTGAGCGGAAGTGAGAGAGGGATATCGCAGCAAAGAAGGTCCAAGTGTTCGAACCTCTAGAAGGCTCATTGGCTCTACAACTTCTTCAGCCATGGAAGCCCTTGATCCCCGTGTAGATCAATCCGATTCCGATTCTGAGGAAGAGGACCAGAGCGAGGATCCATCATTTGAATTGCCCCAAGGTCAAATC
TCCGACGACGATGAAAGCAATGATGGTGTTCTGGAAGACCCAGATGTGCAAACATCAGCTTTAAATAACAAGGATGAGAAGACATATTTGGAGGTTGAAAAGCTCATCGAAGGTGGTAAGCTTGAAAAACTGAAAGTGGATCAGTGCAAGCTTTACCTGCGAAAGCATGGTCTAAGAATAACAGGTCGAAAGTCAGTTCT
TCTTGAACGAATTCAGGAGCACATTGAAATAAAGGATGGCAGTGGCGAAGAAAAGTACCCAAAATCCAGTTTTGTGCTGAATTGTAAAGGTGATGCATGCACCGGGGATATTGTTATGTTTGAGCAAAATGTCTATGACATGTATAATATTGCTGCAAGAAGTTCTGGAGGTCCTTCTATTGGCACTCGTACTGTTGCAG
GACGGATTATAAAGGAGAGCTACGGTGCAGCCAAACAGCAACACACTTTTACGATTGAAGTTCTATGGAGCAAAGGTGAGAAGCCATTGCTTCCATTACGATCACTTCTTATAAAAGGACGGAACCTTTACCGATTAAAAACAGCACGTCAGCCATGGCCTAATGAAGAAGATAGGAGGAAATCGCTTCAAGAGAAGCAT
GATAGAGGATCTCTTGCCCGTCAAATGAGAGATTTGAGGGTCCAAAACAAGGACGTTGGCAGGCCGCGTCACGTCAACAAGCGCAAACAAAAAGATACTGTTTCAGTCTCAAGTAAAATTGTCCATAATGACTCAGACAAGAAATCATCCCAGTCTGATCAGAGATACGATGTCACATCCTTGCCAATGCATGAACTGAA
GATTGACGACAATATACAGAAACAGTTACCCGTGCAAAATCAGGGGAATTTGAATTTCATGAATCATGGAGTTCATAAGGGTATTGGACTCTTTCAAAATCCCAACAAGAATCAATCCGCATATGCAGCCTATAACTATGCTGGAAATTCTAAGACATATTCAAATAACATTCCTTCAGCTGCAGGCACCAGTGGCACAG
ATTATGGTCTCTTTATAACATCCGGCAAAGGATTGATAGGACATACAAGGCCCATGTCAGGCTTATCTGACATGGGACTTGGACATACAAGGCCCATGTCAGGCTTCTATGACATGGGCCTTGGACATACAAGGCCCATGCCAGGCTTCTCTGACATGGGACTTCCAGCTCAGCACACTGGACCACAGCACACTGTATCA
CAGCGTGAACCATGTATGCACTTTCGGAAGGGAAGATGTACTTTTGGTGACCGGTGTAAGTTTTCCCATGCTGTCAATTACAATTACAACCTAAACCATCAACTGGTCCGTAACAAAGAAAATTATCAACCACACAGATATGATTGAAAGGTATTGGTGTTACCTCTTATCCAAATGCAGTTGCAGGCATTAGTCCAATG
GCTATTTTGAGTTTTGCTATGTATGTAAGCAAGCAATTGGTTAATTTATCAATAGAGAGAAAGGAGTGGAGATATTAAAGCCGTAGAAATTAAGGTAAAGCCAGGGTTCAAAGGTCCACCCCAATTGGTTATAAATAATCAAATCTGTTTGCTGTGTATTCAATTGTCAGATTGAATCTTTTTGCCGAGAATTCAATTGT
CTAATCGAATCTGTTTGCTGAGTATTCAATTGCCAGATTGAATCTGTTTGCTGATAATTCAATTGTCAAATCGAATCTGT
>TRINITY_DN111831_c0_g3_i7 from sample A1 / Example unspliced isoform:AATTATTAGCTTGAGCGGAAGTGAGAGAGGGATATCGCAGCAAAGAAGGTCCAAGTGTTCGAACCTCTAGAAGGCTCATTGGCTCTACAACTTCTTCAGCCATGGAAGCCCTTGATCCCCGTGTAGATCAATCCGATTCCGATTCTGAGGAAGAGGACCAGAGCGAGGATCCATCATTTGAATTGCCCCAAGGTCAAATC
TCCGACGACGATGAAAGCAATGATGGTGTTCTGGAAGACCCAGATGTGCAAACATCAGCTTTAAATAACAAGGATGAGAAGACATATTTGGAGGTTGAAAAGCTCATCGAAGGTGGTAAGCTTGAAAAACTGAAAGTGGATCAGTGCAAGCTTTACCTGCGAAAGCATGGTCTAAGAATAACAGGTCGAAAGTCAGTTCT
TCTTGAACGAATTCAGGAGCACATTGAAATAAAGGATGGCAGTGGCGAAGAAAAGTACCCAAAATCCAGTTTTGTGCTGAATTGTAAAGgtgggagcaagacttattattaatgcgattttcacctctttcttagattcaaagttccaaggagtttggcttttagttgtagatttcatgctattgcctagtcgtctaaat
aaatgaagaggatagagacgactgtgtttcttgcatagatttttgatgtacaagtttatttgtctgaattgtatgcctgcattttgttctgttgaattgctttatattatttttggttgaagttctttaagaagcatgcccacaggagctgcactgcaaagaatgaacctcctttggcttagaagctaggtctgaggctt
atctattctgccaacgaagcccaggacttgcacccatcctcatcctttcttatctcatgccatttgagtagatcctcatcccttgttatctcatgccatttgagtaggggcagactgcaaccggaatggaaccttggtggatggcttgacattgtcaactacaccagtaaatcaattcctcattggtggtttgccttata
tttttcctatcattttgatggaaggttcacattgttgcttatatgtttccagGTGATGCATGCACCGGGGATATTGTTATGTTTGAGCAAAATGTCTATGACATGTATAATATTGCTGCAAGAAGTTCTGGAGGTCCTTCTATTGGCACTCGTACTGTTGCAGGACGGATTATAAAGGAGAGCTACGGTGCAGCCAAACA
GCAACACACTTTTACGATTGAAGTTCTATGGAGCAAAGGTGAGAAGCCATTGCTTCCATTACGATCACTTCTTATAAAAGGACGGAACCTTTACCGATTAAAAACAGCACGTCAGCCATGGCCTAATGAAGAAGATAGGAGGAAATCGCTTCAAGAGAAGCATGATAGAGGATCTCTTGCCCGTCAAATGAGAGATTTGA
GGGTCCAAAACAAGGACGTTGGCAGGCCGCGTCACGTCAACAAGCGCAAACAAAAAGATACTGTTTCAGTCTCAAGTAAAATTGTCCATAATGACTCAGACAAGAAATCATCCCAGTCTGATCAGAGATACGATGTCACATCCTTGCCAATGCATGAACTGAAGATTGACGACAATATACAGAAACAGTTACCCGTGCAA
AATCAGGGGAATTTGAATTTCATGAATCATGGAGTTCATAAGGGTATTGGACTCTTTCAAAATCCCAACAAGAATCAATCCGCATATGCAGCCTATAACTATGCTGGAAATTCTAAGACATATTCAAATAACATTCCTTCAGCTGCAGGCACCAGTGGCACAGATTATGGTCTCTTTATAACATCCGGCAAAGGATTGAT
AGGACATACAAGGCCCATGTCAGGCTTATCTGACATGGGACTTGGACATACAAGGCCCATGTCAGGCTTCTATGACATGGGCCTTGGACATACAAGGCCCATGCCAGGCTTCTCTGACATGGGACTTCCAGCTCAGCACACTGGACCACAGCACACTGTATCACAGCGTGAACCATGTATGCACTTTCGGAAGGGAAGAT
GTACTTTTGGTGACCGGTGTAAGTTTTCCCATGCTGTCAATTACAATTACAACCTAAACCATCAACTGGTCCGTAACAAAGAAAATTATCAACCACACAGATATGATTGAAAGGTATTGGTGTTACCTCTTATCCAAATGCAGTTGCAGGCATTAGTCCAATGGCTATTTTGAGTTTTGCTATGTATGTAAGCAAGCAAT
TGGTTAATTTATCAATAGAGAGAAAGGAGTGGAGATATTAAAGCCGTAGAAATTAAGGTAAAGCCAGGGTTCAAAGGTCCACCCCAATTGGTTATAAATAATCAAATCTGTTTGCTGTGTATTCAATTGTCAGATTGAATCTTTTTGCCGAGAATTCAATTGTCTAATCGAATCTGTTTGCTGAGTATTCAATTGCCAGA
TTGAATCTGTTTGCTGATAATTCAATTGTCAAATCGAATCTGT
Intron 5 GTAAGTGATT ... AATATGACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 25 | 57 | 23 | 15 |
| A2 | 23.27 | 61 | 25 | 12 |
| A3 | 21.24 | 89 | 37 | 11 |
| A4 | 26.8 | 56 | 24 | 17 |
| A5 | 22.45 | 19 | 7 | 4 |
| A6 | 18.1 | 43 | 16 | 3 |
| A7 | 15.12 | 146 | 33 | 19 |
| A8 | 15.28 | 61 | 13 | 9 |
| A9 | 15 | 136 | 25 | 23 |
| A10 | 15.32 | 141 | 43 | 8 |
>TRINITY_DN111831_c0_g3_i6 from sample A1 / Example spliced isoformAATTATTAGCTTGAGCGGAAGTGAGAGAGGGATATCGCAGCAAAGAAGGTCCAAGTGTTCGAACCTCTAGAAGGCTCATTGGCTCTACAACTTCTTCAGCCATGGAAGCCCTTGATCCCCGTGTAGATCAATCCGATTCCGATTCTGAGGAAGAGGACCAGAGCGAGGATCCATCATTTGAATTGCCCCAAGGTCAAATC
TCCGACGACGATGAAAGCAATGATGGTGTTCTGGAAGACCCAGATGTGCAAACATCAGCTTTAAATAACAAGGATGAGAAGACATATTTGGAGGTTGAAAAGCTCATCGAAGGTGGTAAGCTTGAAAAACTGAAAGTGGATCAGTGCAAGCTTTACCTGCGAAAGCATGGTCTAAGAATAACAGGTCGAAAGTCAGTTCT
TCTTGAACGAATTCAGGAGCACATTGAAATAAAGGATGGCAGTGGCGAAGAAAAGTACCCAAAATCCAGTTTTGTGCTGAATTGTAAAGGTGATGCATGCACCGGGGATATTGTTATGTTTGAGCAAAATGTCTATGACATGTATAATATTGCTGCAAGAAGTTCTGGAGGTCCTTCTATTGGCACTCGTACTGTTGCAG
GACGGATTATAAAGGAGAGCTACGGTGCAGCCAAACAGCAACACACTTTTACGATTGAAGTTCTATGGAGCAAAGGTGAGAAGCCATTGCTTCCATTACGATCACTTCTTATAAAAGGACGGAACCTTTACCGATTAAAAACAGCACGTCAGCCATGGCCTAATGAAGAAGATAGGAGGAAATCGCTTCAAGAGAAGCAT
GATAGAGGATCTCTTGCCCGTCAAATGAGAGATTTGAGGGTCCAAAACAAGGACGTTGGCAGGCCGCGTCACGTCAACAAGCGCAAACAAAAAGATACTGTTTCAGTCTCAAGTAAAATTGTCCATAATGACTCAGACAAGAAATCATCCCAGTCTGATCAGAGATACGATGTCACATCCTTGCCAATGCATGAACTGAA
GATTGACGACAATATACAGAAACAGTTACCCGTGCAAAATCAGGGGAATTTGAATTTCATGAATCATGGAGTTCATAAGGGTATTGGACTCTTTCAAAATCCCAACAAGAATCAATCCGCATATGCAGCCTATAACTATGCTGGAAATTCTAAGACATATTCAAATAACATTCCTTCAGCTGCAGGCACCAGTGGCACAG
ATTATGGTCTCTTTATAACATCCGGCAAAGGATTGATAGGACATACAAGGCCCATGTCAGGCTTATCTGACATGGGACTTGGACATACAAGGCCCATGTCAGGCTTCTATGACATGGGCCTTGGACATACAAGGCCCATGCCAGGCTTCTCTGACATGGGACTTCCAGCTCAGCACACTGGACCACAGCACACTGTATCA
CAGCGTGAACCATGTATGCACTTTCGGAAGGGAAGATGTACTTTTGGTGACCGGTGTAAGTTTTCCCATGCTGTCAATTACAATTACAACCTAAACCATCAACTGGTCCGTAACAAAGAAAATTATCAACCACACAGATATGATTGAAAGGTATTGGTGTTACCTCTTATCCAAATGCAGTTGCAGGCATTAGTCCAATG
GCTATTTTGAGTTTTGCTATGTATGTAAGCAAGCAATTGGTTAATTTATCAATAGAGAGAAAGGAGTGGAGATATTAAAGCCGTAGAAATTAAGGTAAAGCCAGGGTTCAAAGGTCCACCCCAATTGGTTATAAATAATCAAATCTGTTTGCTGTGTATTCAATTGTCAGATTGAATCTTTTTGCCGAGAATTCAATTGT
CTAATCGAATCTGTTTGCTGAGTATTCAATTGCCAGATTGAATCTGTTTGCTGATAATTCAATTGTCAAATCGAATCTGT
>TRINITY_DN111831_c0_g3_i2 from sample A1 / Example unspliced isoform:AATTATTAGCTTGAGCGGAAGTGAGAGAGGGATATCGCAGCAAAGAAGGTCCAAGTGTTCGAACCTCTAGAAGGCTCATTGGCTCTACAACTTCTTCAGCCATGGAAGCCCTTGATCCCCGTGTAGATCAATCCGATTCCGATTCTGAGGAAGAGGACCAGAGCGAGGATCCATCATTTGAATTGCCCCAAGGTCAAATC
TCCGACGAgtaagtgatttctaatttacttgtattttgcttgataggacttgaaccagagcatattttttaaaatctagaaggtttggtttctttgaaaaataaacattgtatcgagtatttattgcctaggcttacaggatcctgcattttcataattttcatcctgtatttttattgtcgttatagcttttaggttag
gttagggtaggtttggttttgctctgttcaagttattgggaagggtattggaacgaggtttattttcctaagaaaaacagaggatgtgggcaatctatcctgttgccatataaaaatgcattgcattgcgctttctgcacttaactacattttctttatcgtccaccacctattggttcaatggcaagtttggggggctt
tccaagaggagagcacccagtatcgaatttatggataccttcagcccgtcaatctctacaccaataattggagaagtggtagaagttactgattgccttgtatccctagaattcgatgttactctgctatctttgctatctttcgtatttcttatagttggttaatttattctacattctttgacaaaaccctagaaaat
tgctccctccttgagcctgtcttatttgtattttatttggcatttaatacacctgtcctgtccagcacatctagcaaatatacggacatatctgcatgtatgatgatattttttgatctgatgggaattgtttctatcctgctctgttaatatgacagCGATGAAAGCAATGATGGTGTTCTGGAAGACCCAGATGTGCA
AACATCAGCTTTAAATAACAAGGATGAGAAGACATATTTGGAGGTTGAAAAGCTCATCGAAGGTGGTAAGCTTGAAAAACTGAAAGTGGATCAGTGCAAGCTTTACCTGCGAAAGCATGGTCTAAGAATAACAGGTCGAAAGTCAGTTCTTCTTGAACGAATTCAGGAGCACATTGAAATAAAGGATGGCAGTGGCGAAG
AAAAGTACCCAAAATCCAGTTTTGTGCTGAATTGTAAAGGTGATGCATGCACCGGGGATATTGTTATGTTTGAGCAAAATGTCTATGACATGTATAATATTGCTGCAAGAAGTTCTGGAGGTCCTTCTATTGGCACTCGTACTGTTGCAGGACGGATTATAAAGGAGAGCTACGGTGCAGCCAAACAGCAACACACTTTT
ACGATTGAAGTTCTATGGAGCAAAGGTGAGAAGCCATTGCTTCCATTACGATCACTTCTTATAAAAGGACGGAACCTTTACCGATTAAAAACAGCACGTCAGCCATGGCCTAATGAAGAAGATAGGAGGAAATCGCTTCAAGAGAAGCATGATAGAGGATCTCTTGCCCGTCAAATGAGAGATTTGAGGGTCCAAAACAA
GGACGTTGGCAGGCCGCGTCACGTCAACAAGCGCAAACAAAAAGATACTGTTTCAGTCTCAAGTAAAATTGTCCATAATGACTCAGACAAGAAATCATCCCAGTCTGATCAGAGATACGATGTCACATCCTTGCCAATGCATGAACTGAAGATTGACGACAATATACAGAAACAGTTACCCGTGCAAAATCAGGGGAATT
TGAATTTCATGAATCATGGAGTTCATAAGGGTATTGGACTCTTTCAAAATCCCAACAAGAATCAATCCGCATATGCAGCCTATAACTATGCTGGAAATTCTAAGACATATTCAAATAACATTCCTTCAGCTGCAGGCACCAGTGGCACAGATTATGGTCTCTTTATAACATCCGGCAAAGGATTGATAGGACATACAAGG
CCCATGTCAGGCTTATCTGACATGGGACTTGGACATACAAGGCCCATGTCAGGCTTCTATGACATGGGCCTTGGACATACAAGGCCCATGCCAGGCTTCTCTGACATGGGACTTCCAGCTCAGCACACTGGACCACAGCACACTGTATCACAGCGTGAACCATGTATGCACTTTCGGAAGGGAAGATGTACTTTTGGTGA
CCGGTGTAAGTTTTCCCATGCTGTCAATTACAATTACAACCTAAACCATCAACTGGTCCGTAACAAAGAAAATTATCAACCACACAGATATGATTGAAAGGTATTGGTGTTACCTCTTATCCAAATGCAGTTGCAGGCATTAGTCCAATGGCTATTTTGAGTTTTGCTATGTATGTAAGCAAGCAATTGGTTAATTTATC
AATAGAGAGAAAGGAGTGGAGATATTAAAGCCGTAGAAATTAAGGTAAAGCCAGGGTTCAAAGGTCCACCCCAATTGGTTATAAATAATCAAATCTGTTTGCTGTGTATTCAATTGTCAGATTGAATCTTTTTGCCGAGAATTCAATTGTCTAATCGAATCTGTTTGCTGAGTATTCAATTGCCAGATTGAATCTGTTTG
CTGATAATTCAATTGTCAAATCGAATCTGT