sp|Q9CAD5|YODA_ARATH ----> Mitogen-activated protein kinase kinase kinase YODA
Intron 1 GTATGGAATA ... GCATGAGAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 55.56 | 12 | 14 | 16 |
| A2 | 100 | 0 | 10 | 13 |
| A3 | 100 | 0 | 5 | 14 |
| A4 | 100 | 0 | 13 | 19 |
| A5 | 100 | 0 | 3 | 6 |
| A6 | 100 | 0 | 2 | 5 |
| A7 | 100 | 0 | 1 | 3 |
| A8 | -1 | 0 | 0 | 0 |
| A9 | 45.45 | 6 | 6 | 4 |
| A10 | 89.47 | 1 | 8 | 9 |
>TRINITY_DN125542_c2_g2_i8 from sample A1 / Example spliced isoformGAAAAACCGAAAAAGCTTTTGGTTGGAGTTCCCATGGCGGCGTCGGGGTGATATAGCTAAGAAGAATAATAATTGAAAGTACCGAGGCTTTCAAGGGTTCGAAGAAGTCAAATTTCGAAGGAGAATAACGGGAACATCGTTCTTTCGAGTCAGCGGGGTTCGAACCTGGGCGGGGACGGGGGTTTGATCGGCCGGCGGTC
GGCTCTTTACGGAATGGTTGCGGCCGGTGGCGGCGGAGGCCCTGGCCATCTTTGGTTGAGGAAATGTAGCTGTAGCAGTGCCGGTGGTCTTCCTTGTTGCTGTTTGGCTGAGAGATTAATGCTGACCGTGGCTTCTTATCTCAAGTTTGCTGTCCTTCACCCCTTGTGACGTCGGGTTTGGTGCACTGTCGTTGCTTCGA
AGTCGAGTCCTTCAAATCCGAGGATTGAGACTTCTGTATTGAGGGTGATACTATGTGAAGGGTGTCCTTGGATATACATCAAATTTAAAGCTGCAATGGTGTGTGCAGCTTAATCAAGCCCAGTTGGTATAGTCTAACTTGCATTAGAAACTATTGGCTTAGTAGTTTTTCAGACTGCCAATATGCCGTCATGGTGGAGG
AAGTCAACTTCTAAAGAAGTAAAGAAGAAGGGAAGTAAAGATAACTTACTTGATGCTCTGCATATCCGAAAATTGAAATTCTTATCAGAAGAAAAGGGAAGCTTCCAATCTTCAGGAGCATCCAGGCGATGCAGTCTTGATACAGCTTCAGAGAATGGTTCTGGACCTAGAACAGACTCAGCATCACCTTCGCCTTCTGC
CCATGTAGCACGTTCTCAGAGTTTTGCTGAAAGGCCACATGGGCAACCGCTTCCCCTGCCATCAGCACTGGGTCGTGCAGAAGGGTTCAGTTTGACTCAACCTTCTGGGAATAGGTCTGGGAGATTATCTCCTTCTTTACCACTTCCTTCACCTGATCAGGTACTGAGCAGGTTGGATATTGCAGATGTAGATGGAGGCT
CGTCTTCTACATCTGTTTCATGTGTGAGCTCTGTAAGTAGTGATGAAACTGCAGATTTGCAGCAGGACAATGGGCCAGGGCATGCTAATTATAAGCATTCTGATGCAGGCCTTGCTGGTAGAGTGATTGCTGATGGGCACGGAGGTTCTGGGTAAGTTCGTTTTTTCCTCTGGTCATTTTATTCATATTGTCATGCATCT
TACCTTTCTTCAGCTCTTTGCTTGTATTCTTGACTCTTTAGCTGAAGAAACATTATGCTCTACTATAGTGGTCATTCGTTGGACAATAACAAATATGTCTTATCTTGTCTTATCTACTGTCCATAAGGATGATTGAGATGAATTTTCAGTGTGCTATTTTTTTGTTTGTTTGCACTGACATTTTGCTATGTGCAACTGAA
GTGTGATGCATGCAGGGCAATCTCCCAAGGTTAGTAGGAAATATTCAAAACAGGATATACTGAGGCCTGGTAGTCCTCTTGCCAGCCATCATAATCTTTCATCTTCACCCAAAGGAGGATTCTTTAATACAGAGGCTCCGGCACATCTGCAAATTCCAGTTAATGGACTACTAGGGAATGTGCTAGACAGTTCCATGTCT
AGTCCTTCAAGAAGTCCAATGAGGGTTTATGGTTCTGAGCAATCTCCCAACAGTGCTTTCTGGGCTGCAAAATCCTATCCCGAGTTAGCTTTCTTTGGCTCAGGCCATTGTTCAAGTCCTGGTTCGGGTCACAATTCGGGCCCTAATTCCATGGGTGGAGATATGACTGGGCAACCATTTTGGCAGCAGAGCAGAGGTAG
CCCAGAATGTTCTCCCATTCCTAGCCCAAGAATGACAAGCGGTCCGAGCTCAAGAGTTCAGAGTGGGGCAGTTACACCTTTGCATCCTCGAGCTAGTGGAACAGCTCCCGAATCTCCAACTAGCTGGCCAGAAGAGAGAAAACACCCTGGCCACCGCTTGCCTCTACCACCCTTGCTTATTTCTAATTCATCACCTTATG
CTATGTCCTGTTCAGCATCTGCTATGTCGTCGGCAGTACCCCGGAGTCCTGGCAGGGCAGACAATCCGCCAAGTCCTGGAGCTCGTTGGAAGAAGGGAAAATTGCTAGGAAGGGGGACGTTTGGACATGTTTATGCTGGTCTTAACAGTGAAAGTGGCAAAATGTGTGCGATGAAGGAAGTTACACTGTTTGCTGATGAT
CCAAAGTCGAAGGAAAGTGTAAAGCAGTTAGCACAGGAAATAGCCTTGCTTAGTTCTCTCAGGCATAAGAACATAGTGCAGTACTATGGGAGTGAAACGATTGATGATAGGCTCTATATTTATCTGGAATATGTTTCTGGTGGGTCTATACACAAACTACTTCAAGAGTATGGCCAGTTTGGAGAACCAATTATTCGCAG
CTATACACGACA
>TRINITY_DN125542_c2_g2_i3 from sample A1 / Example unspliced isoform:GAAAAACCGAAAAAGCTTTTGGTTGGAGTTCCCATGGCGGCGTCGGGGTGATATAGCTAAGAAGAATAATAATTGAAAGgtatggaatatttttcgtcgtcacaaaccctcgattttagagcaggtagaagctctcgtattttgctgttaaaattctgttctttcatttattattgagcatgagaagTACCGAGGCTTTC
AAGGGTTCGAAGAAGTCAAATTTCGAAGGAGAATAACGGGAACATCGTTCTTTCGAGTCAGCGGGGTTCGAACCTGGGCGGGGACGGGGGTTTGATCGGCCGGCGGTCGGCTCTTTACGGAATGGTTGCGGCCGGTGGCGGCGGAGGCCCTGGCCATCTTTGGTTGAGGAAATGTAGCTGTAGCAGTGCCGGTGGTCTTC
CTTGTTGCTGTTTGGCTGAGAGATTAATGCTGACCGTGGCTTCTTATCTCAAGTTTGCTGTCCTTCACCCCTTGTGACGTCGGGTTTGGTGCACTGTCGTTGCTTCGAAGTCGAGTCCTTCAAATCCGAGGTTAGCGTTCTCCTCCGGGGCCCTGGCATCGATGTAGTATGGATTTACTGCTAAATATATTGTTTTGTTT
GGTGTATTTATGCCAATAATTTGACTGTCGTGCGAAATCCTATTTTAGCGCACTTGTATAGCATCGCGGTTACTTAAGCAAATCCCCATTTTTTTGGCCACAGTTATGTTCGCATCCGGGAAATAATTACGAGGTCTCCGG
Intron 2 GTTCCTTTAT ... CTTTGGACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 55.1 | 11 | 18 | 9 |
| A2 | 49.02 | 13 | 17 | 8 |
| A3 | 66.67 | 6 | 13 | 11 |
| A4 | 46.67 | 8 | 11 | 3 |
| A5 | 57.89 | 4 | 8 | 3 |
| A6 | 33.33 | 1 | 1 | 0 |
| A7 | 42.86 | 2 | 2 | 1 |
| A8 | 60 | 1 | 2 | 1 |
| A9 | 100 | 0 | 5 | 2 |
| A10 | 57.14 | 3 | 3 | 5 |
>TRINITY_DN125542_c2_g2_i8 from sample A1 / Example spliced isoformGAAAAACCGAAAAAGCTTTTGGTTGGAGTTCCCATGGCGGCGTCGGGGTGATATAGCTAAGAAGAATAATAATTGAAAGTACCGAGGCTTTCAAGGGTTCGAAGAAGTCAAATTTCGAAGGAGAATAACGGGAACATCGTTCTTTCGAGTCAGCGGGGTTCGAACCTGGGCGGGGACGGGGGTTTGATCGGCCGGCGGTC
GGCTCTTTACGGAATGGTTGCGGCCGGTGGCGGCGGAGGCCCTGGCCATCTTTGGTTGAGGAAATGTAGCTGTAGCAGTGCCGGTGGTCTTCCTTGTTGCTGTTTGGCTGAGAGATTAATGCTGACCGTGGCTTCTTATCTCAAGTTTGCTGTCCTTCACCCCTTGTGACGTCGGGTTTGGTGCACTGTCGTTGCTTCGA
AGTCGAGTCCTTCAAATCCGAGGATTGAGACTTCTGTATTGAGGGTGATACTATGTGAAGGGTGTCCTTGGATATACATCAAATTTAAAGCTGCAATGGTGTGTGCAGCTTAATCAAGCCCAGTTGGTATAGTCTAACTTGCATTAGAAACTATTGGCTTAGTAGTTTTTCAGACTGCCAATATGCCGTCATGGTGGAGG
AAGTCAACTTCTAAAGAAGTAAAGAAGAAGGGAAGTAAAGATAACTTACTTGATGCTCTGCATATCCGAAAATTGAAATTCTTATCAGAAGAAAAGGGAAGCTTCCAATCTTCAGGAGCATCCAGGCGATGCAGTCTTGATACAGCTTCAGAGAATGGTTCTGGACCTAGAACAGACTCAGCATCACCTTCGCCTTCTGC
CCATGTAGCACGTTCTCAGAGTTTTGCTGAAAGGCCACATGGGCAACCGCTTCCCCTGCCATCAGCACTGGGTCGTGCAGAAGGGTTCAGTTTGACTCAACCTTCTGGGAATAGGTCTGGGAGATTATCTCCTTCTTTACCACTTCCTTCACCTGATCAGGTACTGAGCAGGTTGGATATTGCAGATGTAGATGGAGGCT
CGTCTTCTACATCTGTTTCATGTGTGAGCTCTGTAAGTAGTGATGAAACTGCAGATTTGCAGCAGGACAATGGGCCAGGGCATGCTAATTATAAGCATTCTGATGCAGGCCTTGCTGGTAGAGTGATTGCTGATGGGCACGGAGGTTCTGGGTAAGTTCGTTTTTTCCTCTGGTCATTTTATTCATATTGTCATGCATCT
TACCTTTCTTCAGCTCTTTGCTTGTATTCTTGACTCTTTAGCTGAAGAAACATTATGCTCTACTATAGTGGTCATTCGTTGGACAATAACAAATATGTCTTATCTTGTCTTATCTACTGTCCATAAGGATGATTGAGATGAATTTTCAGTGTGCTATTTTTTTGTTTGTTTGCACTGACATTTTGCTATGTGCAACTGAA
GTGTGATGCATGCAGGGCAATCTCCCAAGGTTAGTAGGAAATATTCAAAACAGGATATACTGAGGCCTGGTAGTCCTCTTGCCAGCCATCATAATCTTTCATCTTCACCCAAAGGAGGATTCTTTAATACAGAGGCTCCGGCACATCTGCAAATTCCAGTTAATGGACTACTAGGGAATGTGCTAGACAGTTCCATGTCT
AGTCCTTCAAGAAGTCCAATGAGGGTTTATGGTTCTGAGCAATCTCCCAACAGTGCTTTCTGGGCTGCAAAATCCTATCCCGAGTTAGCTTTCTTTGGCTCAGGCCATTGTTCAAGTCCTGGTTCGGGTCACAATTCGGGCCCTAATTCCATGGGTGGAGATATGACTGGGCAACCATTTTGGCAGCAGAGCAGAGGTAG
CCCAGAATGTTCTCCCATTCCTAGCCCAAGAATGACAAGCGGTCCGAGCTCAAGAGTTCAGAGTGGGGCAGTTACACCTTTGCATCCTCGAGCTAGTGGAACAGCTCCCGAATCTCCAACTAGCTGGCCAGAAGAGAGAAAACACCCTGGCCACCGCTTGCCTCTACCACCCTTGCTTATTTCTAATTCATCACCTTATG
CTATGTCCTGTTCAGCATCTGCTATGTCGTCGGCAGTACCCCGGAGTCCTGGCAGGGCAGACAATCCGCCAAGTCCTGGAGCTCGTTGGAAGAAGGGAAAATTGCTAGGAAGGGGGACGTTTGGACATGTTTATGCTGGTCTTAACAGTGAAAGTGGCAAAATGTGTGCGATGAAGGAAGTTACACTGTTTGCTGATGAT
CCAAAGTCGAAGGAAAGTGTAAAGCAGTTAGCACAGGAAATAGCCTTGCTTAGTTCTCTCAGGCATAAGAACATAGTGCAGTACTATGGGAGTGAAACGATTGATGATAGGCTCTATATTTATCTGGAATATGTTTCTGGTGGGTCTATACACAAACTACTTCAAGAGTATGGCCAGTTTGGAGAACCAATTATTCGCAG
CTATACACGACA
>TRINITY_DN125542_c2_g2_i11 from sample A1 / Example unspliced isoform:GAAAAACCGAAAAAGCTTTTGGTTGGAGTTCCCATGGCGGCGTCGGGGTGATATAGCTAAGAAGAATAATAATTGAAAGTACCGAGGCTTTCAAGGGTTCGAAGAAGTCAAATTTCGAAGGAGAATAACGGGAACATCGTTCTTTCGAGTCAGCGGGGTTCGAACCTGGGCGGGGACGGGGGTTTGATCGGCCGGCGGTC
GGCTCTTTACGGAATGGTTGCGGCCGGTGGCGGCGGAGGCCCTGGCCATCTTTGGTTGAGGAAATGTAGCTGTAGCAGTGCCGGTGGTCTTCCTTGTTGCTGTTTGGCTGAGAGATTAATGCTGACCGTGGCTTCTTATCTCAAGTTTGCTGTCCTTCACCCCTTGTGACGTCGGGTTTGGTGCACTGTCGTTGCTTCGA
AGTCGAGTCCTTCAAATCCGAGgttcctttatttttcacaactcctccgtgattactcaaagttttgtttaatggaaggaaactgactggatcaacttcagtatttgttcatctacttgagttcttcatttgtgagaccatgatataagattggttctttcctaaagagaagaaacacttgtattttgatacattctagc
caacaaaagttcaatgcattcaatgaatttgtatctttaatatgatttcaagttctatagcatcttcaagttgcagatgtaatttgctttggacagGATTGAGACTTCTGTATTGAGGGTGATACTATGTGAAGGGTGTCCTTGGATATACATCAAATTTAAAGCTGCAATGGTGTGTGCAGCTTAATCAAGCCCAGTTG
GTATAGTCTAACTTGCATTAGAAACTATTGGCTTAGTAGTTTTTCAGACTGCCAATATGCCGTCATGGTGGAGGAAGTCAACTTCTAAAGAAGTAAAGAAGAAGGGAAGTAAAGATAACTTACTTGATGCTCTGCATATCCGAAAATTGAAATTCTTATCAGAAGAAAAGGGAAGCTTCCAATCTTCAGGAGCATCCAGG
CGATGCAGTCTTGATACAGCTTCAGAGAATGGTTCTGGACCTAGAACAGACTCAGCATCACCTTCGCCTTCTGCCCATGTAGCACGTTCTCAGAGTTTTGCTGAAAGGCCACATGGGCAACCGCTTCCCCTGCCATCAGCACTGGGTCGTGCAGAAGGGTTCAGTTTGACTCAACCTTCTGGGAATAGGTCTGGGAGATT
ATCTCCTTCTTTACCACTTCCTTCACCTGATCAGGTACTGAGCAGGTTGGATATTGCAGATGTAGATGGAGGCTCGTCTTCTACATCTGTTTCATGTGTGAGCTCTGTAAGTAGTGATGAAACTGCAGATTTGCAGCAGGACAATGGGCCAGGGCATGCTAATTATAAGCATTCTGATGCAGGCCTTGCTGGTAGAGTGA
TTGCTGATGGGCATGGAGGTTCTGGTGTGATGCATGCAGGGCAATCTCCCAAGGTTAGTAGGAAATATTCAAAACAGGATATACTGAGGCCTGGTAGTCCTCTTGCCAGCCATCATAATCTTTCATCTTCACCCAAAGGAGGATTCTTTAATACAGAGGCTCCGGCACATCTGCAAATTCCAGTTAATGGACTACTAGGG
AATGTGCTAGACAGTTCCATGTCTAGTCCTTCAAGAAGTCCAATGAGGGTTTATGGTTCTGAGCAATCTCCCAACAGTGCTTTCTGGGCTGCAAAATCCTATCCCGAGTTAGCTTTCTTTGGCTCAGGCCATTGTTCAAGTCCTGGTTCGGGTCACAATTCGGGCCCTAATTCCATGGGTGGAGATATGACTGGGCAACC
ATTTTGGCAGCAGAGCAGAGGTAGCCCAGAATGTTCTCCCATTCCTAGCCCAAGAATGACAAGCGGTCCGAGCTCAAGAGTTCAGAGTGGGGCAGTTACACCTTTGCATCCTCGAGCTAGTGGAACAGCTCCCGAATCTCCAACTAGCTGGCCAGAAGAGAGAAAACACCCTGGCCACCGCTTGCCTCTACCACCCTTGC
TTATTTCTAATTCATCACCTTATGCTATGTCCTGTTCAGCATCTGCTATGTCGTCGGCAGTACCCCGGAGTCCTGGCAGGGCAGACAATCCGCCAAGTCCTGGAGCTCGTTGGAAGAAGGGAAAATTGCTAGGAAGGGGGACGTTTGGACATGTTTATGCTGGTCTTAACAGTGAAAGTGGCAAAATGTGTGCGATGAAG
GAAGTTACACTGTTTGCTGATGATCCAAAGTCGAAGGAAAGTGTAAAGCAGTTAGCACAGGAAATAGCCTTGCTTAGTTCTCTCAGGCATAAGAACATAGTGCAGTACTATGGGAGTGAAACGATTGATGATAGGCTCTATATTTATCTGGAATATGTTTCTGGTGGGTCTATACACAAACTACTTCAAGAGTATGGCCA
GTTTGGAGAACCAATTATTCGCAGCTATACACGACA
Intron 3 GTAAAATTCC ... CCTTTGACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 37.74 | 33 | 20 | 3 |
| A2 | 34.62 | 51 | 27 | 5 |
| A3 | 39.22 | 31 | 20 | 5 |
| A4 | 33.33 | 24 | 12 | 2 |
| A5 | 24.32 | 28 | 9 | 2 |
| A6 | 0 | 7 | 0 | 0 |
| A7 | 10 | 18 | 2 | 0 |
| A8 | 0 | 7 | 0 | 0 |
| A9 | 29.63 | 19 | 8 | 0 |
| A10 | 18.75 | 26 | 6 | 0 |
>TRINITY_DN125542_c2_g2_i8 from sample A1 / Example spliced isoformGAAAAACCGAAAAAGCTTTTGGTTGGAGTTCCCATGGCGGCGTCGGGGTGATATAGCTAAGAAGAATAATAATTGAAAGTACCGAGGCTTTCAAGGGTTCGAAGAAGTCAAATTTCGAAGGAGAATAACGGGAACATCGTTCTTTCGAGTCAGCGGGGTTCGAACCTGGGCGGGGACGGGGGTTTGATCGGCCGGCGGTC
GGCTCTTTACGGAATGGTTGCGGCCGGTGGCGGCGGAGGCCCTGGCCATCTTTGGTTGAGGAAATGTAGCTGTAGCAGTGCCGGTGGTCTTCCTTGTTGCTGTTTGGCTGAGAGATTAATGCTGACCGTGGCTTCTTATCTCAAGTTTGCTGTCCTTCACCCCTTGTGACGTCGGGTTTGGTGCACTGTCGTTGCTTCGA
AGTCGAGTCCTTCAAATCCGAGGATTGAGACTTCTGTATTGAGGGTGATACTATGTGAAGGGTGTCCTTGGATATACATCAAATTTAAAGCTGCAATGGTGTGTGCAGCTTAATCAAGCCCAGTTGGTATAGTCTAACTTGCATTAGAAACTATTGGCTTAGTAGTTTTTCAGACTGCCAATATGCCGTCATGGTGGAGG
AAGTCAACTTCTAAAGAAGTAAAGAAGAAGGGAAGTAAAGATAACTTACTTGATGCTCTGCATATCCGAAAATTGAAATTCTTATCAGAAGAAAAGGGAAGCTTCCAATCTTCAGGAGCATCCAGGCGATGCAGTCTTGATACAGCTTCAGAGAATGGTTCTGGACCTAGAACAGACTCAGCATCACCTTCGCCTTCTGC
CCATGTAGCACGTTCTCAGAGTTTTGCTGAAAGGCCACATGGGCAACCGCTTCCCCTGCCATCAGCACTGGGTCGTGCAGAAGGGTTCAGTTTGACTCAACCTTCTGGGAATAGGTCTGGGAGATTATCTCCTTCTTTACCACTTCCTTCACCTGATCAGGTACTGAGCAGGTTGGATATTGCAGATGTAGATGGAGGCT
CGTCTTCTACATCTGTTTCATGTGTGAGCTCTGTAAGTAGTGATGAAACTGCAGATTTGCAGCAGGACAATGGGCCAGGGCATGCTAATTATAAGCATTCTGATGCAGGCCTTGCTGGTAGAGTGATTGCTGATGGGCACGGAGGTTCTGGGTAAGTTCGTTTTTTCCTCTGGTCATTTTATTCATATTGTCATGCATCT
TACCTTTCTTCAGCTCTTTGCTTGTATTCTTGACTCTTTAGCTGAAGAAACATTATGCTCTACTATAGTGGTCATTCGTTGGACAATAACAAATATGTCTTATCTTGTCTTATCTACTGTCCATAAGGATGATTGAGATGAATTTTCAGTGTGCTATTTTTTTGTTTGTTTGCACTGACATTTTGCTATGTGCAACTGAA
GTGTGATGCATGCAGGGCAATCTCCCAAGGTTAGTAGGAAATATTCAAAACAGGATATACTGAGGCCTGGTAGTCCTCTTGCCAGCCATCATAATCTTTCATCTTCACCCAAAGGAGGATTCTTTAATACAGAGGCTCCGGCACATCTGCAAATTCCAGTTAATGGACTACTAGGGAATGTGCTAGACAGTTCCATGTCT
AGTCCTTCAAGAAGTCCAATGAGGGTTTATGGTTCTGAGCAATCTCCCAACAGTGCTTTCTGGGCTGCAAAATCCTATCCCGAGTTAGCTTTCTTTGGCTCAGGCCATTGTTCAAGTCCTGGTTCGGGTCACAATTCGGGCCCTAATTCCATGGGTGGAGATATGACTGGGCAACCATTTTGGCAGCAGAGCAGAGGTAG
CCCAGAATGTTCTCCCATTCCTAGCCCAAGAATGACAAGCGGTCCGAGCTCAAGAGTTCAGAGTGGGGCAGTTACACCTTTGCATCCTCGAGCTAGTGGAACAGCTCCCGAATCTCCAACTAGCTGGCCAGAAGAGAGAAAACACCCTGGCCACCGCTTGCCTCTACCACCCTTGCTTATTTCTAATTCATCACCTTATG
CTATGTCCTGTTCAGCATCTGCTATGTCGTCGGCAGTACCCCGGAGTCCTGGCAGGGCAGACAATCCGCCAAGTCCTGGAGCTCGTTGGAAGAAGGGAAAATTGCTAGGAAGGGGGACGTTTGGACATGTTTATGCTGGTCTTAACAGTGAAAGTGGCAAAATGTGTGCGATGAAGGAAGTTACACTGTTTGCTGATGAT
CCAAAGTCGAAGGAAAGTGTAAAGCAGTTAGCACAGGAAATAGCCTTGCTTAGTTCTCTCAGGCATAAGAACATAGTGCAGTACTATGGGAGTGAAACGATTGATGATAGGCTCTATATTTATCTGGAATATGTTTCTGGTGGGTCTATACACAAACTACTTCAAGAGTATGGCCAGTTTGGAGAACCAATTATTCGCAG
CTATACACGACA
>TRINITY_DN125542_c2_g2_i7 from sample A1 / Example unspliced isoform:AAAAGATTTAGAGGTCGTCATCATGAACTTCTCATATGCTAACATTTTGGTGTTGTGAAGAGTAGAAGAATTTTACATATATCATGTGTTCCAGTACTTCACGTGTCAACTTGATGGAATGGGCAATAGGATAGAAATTTCCTTCCTACGCTTGGTAAGGTAAATGATCCTCAGGTTTTGTAGCTGAATTTATGTTAAAC
TTTTGATGCAGTTTTTTTTTTCTTTTTAACTATAAGCATTTTGTTCTGTATCATCAATAGTAGGCCTTTAACAGCTAGAACAACGTTTTTTTTTCAGACAATGTAATATTTCTAATTTTTAATGCATATAGTGGCCAAAAACTTGGTTGCTATACTCAGAGCTTTAAGGCATTTTCATTTCCTTTTATCTGTTTGTCCTG
TGCTAAAACCATTTTTTCTGCATTTATTGCCTTTTTGTTTTTAAATAAATTGCTGCGAAATCTGGAATATATATATTATAGCCTTCTCATATCCAATGTCAAATGCAGGTTCCTTTATTTTTCACAACTCCTCCGTGATTACTCAAAGTTTTGTTTAATGGAAGGAAACTGACTGGATCAACTTCAGTATTTGTTCATCT
ACTTGAGTTCTTCATTTGTGAGACCATGATATAAGATTGGTTCTTTCCTAAAGAGAAGAAACACTTGTATTTTGATACATTCTAGCCAACAAAAGTTCAATGCATTCAATGAATTTGTATCTTTAATATGATTTCAAGTTCTATAGCATCTTCAAGTTGCAGATGTAATTTGCTTTGGACTGGATTGAGACTTCTGTATT
GAGGGTGATACTATGTGAAGGGTGTCCTTGGATATACATCAAATTTAAAGCTGCAATGGTGTGTGCAGCTTAATCAAGCCCAGTTGGTATAGTCTAACTTGCATTAGAAACTATTGGCTTAGTAGTTTTTCAGACTGCCAATATGCCGTCATGGTGGAGGAAGTCAACTTCTAAAGAAGTAAAGAAGAAGGGAAGTAAAG
ATAACTTACTTGATGCTCTGCATATCCGAAAATTGAAATTCTTATCAGAAGAAAAGGGAAGCTTCCAATCTTCAGGAGCATCCAGGCGATGCAGTCTTGATACAGCTTCAGAGAATGGTTCTGGACCTAGAACAGACTCAGCATCACCTTCGCCTTCTGCCCATGTAGCACGTTCTCAGAGTTTTGCTGAAAGGCCACAT
GGGCAACCGCTTCCCCTGCCATCAGCACTGGGTCGTGCAGAAGGGTTCAGTTTGACTCAACCTTCTGGGAATAGGTCTGGGAGATTATCTCCTTCTTTACCACTTCCTTCACCTGATCAGGTACTGAGCAGGTTGGATATTGCAGATGTAGATGGAGGCTCGTCTTCTACATCTGTTTCATGTGTGAGCTCTGTAAGTAG
TGATGAAACTGCAGATTTGCAGCAGGACAATGGGCCAGGGCATGCTAATTATAAGCATTCTGATGCAGGCCTTGCTGGTAGAGTGATTGCTGATGGGCACGGAGGTTCTGGGTAAGTTCGTTTTTTCCTCTGGTCATTTTATTCATATTGTCATGCATCTTACCTTTCTTCAGCTCTTTGCTTGTATTCTTGACTCTTTA
GCTGAAGAAACATTATGCTCTACTATAGTGGTCATTCGTTGGACAATAACAAATATGTCTTATCTTGTCTTATCTACTGTCCATAAGGATGATTGAGATGAATTTTCAGTGTGCTATTTTTTTGTTTGTTTGCACTGACATTTTGCTATGTGCAACTGAAGTGTGATGCATGCAGGGCAATCTCCCAAGGTTAGTAGGAA
ATATTCAAAACAGGATATACTGAGGCCTGGTAGTCCTCTTGCCAGCCATCATAATCTTTCATCTTCACCCAAAGGAGGATTCTTTAATACAGAGGCTCCGGCACATCTGCAAATTCCAGTTAATGGACTACTAGGGAATGTGCTAGACAGTTCCATGTCTAGTCCTTCAAGAAGTCCAATGAGGGTTTATGGTTCTGAGC
AATCTCCCAACAGTGCTTTCTGGGCTGCAAAATCCTATCCCGAGTTAGCTTTCTTTGGCTCAGGCCATTGTTCAAGTCCTGGTTCGGGTCACAATTCGGGCCCTAATTCCATGGGTGGAGATATGACTGGGCAACCATTTTGGCAGCAGAGCAGAGGTAGCCCAGAATGTTCTCCCATTCCTAGCCCAAGAATGACAAGC
GGTCCGAGCTCAAGAGTTCAGAGTGGGGCAGTTACACCTTTGCATCCTCGAGCTAGTGGAACAGCTCCCGAATCTCCAACTAGCTGGCCAGAAGAGAGAAAACACCCTGGCCACCGCTTGCCTCTACCACCCTTGCTTATTTCTAATTCATCACCTTATGCTATGTCCTGTTCAGCATCTGCTATGTCGTCGGCAGTACC
CCGGAGTCCTGGCAGGGCAGACAATCCGCCAAGTCCTGGAGCTCGTTGGAAGAAGGGAAAATTGCTAGGAAGGGGGACGTTTGGACATGTTTATGCTGGTCTTAACAGTGAAAGTGGCAAAATGTGTGCGATGAAGGAAGTTACACTGTTTGCTGATGATCCAAAGTCGAAGGAAAGTGTAAAGCAGTTAGCACAGgtaa
aattccttacacatgactatttttaaagcctctcattctaattttgaaatcagtgcattgtaatccaactgttacgttgaaattaatgcaataacacattgaactgccaagttgatggtttcaggactgcaggtgtcacattgaactgtgaatttgatgtttttaccttttaggaccttgcaggtggtctcagatgtatt
taacaaatattattatctatatcaatattgatagattgtttcttggcacctgacagtcccattgacctactttttggtcatttgttggacattactaaaattatcttatcttatcttatctacttgcctttgacagGAAATAGCCTTGCTTAGTTCTCTCAGGCATAAGAACATAGTGCAGTACTATGGGAGTGAAACGG
TATGTTCGTTGTTCTGCTT
Intron 4 GTGCAACTGA ... AATATTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 36.21 | 37 | 21 | 2 |
| A2 | 43.48 | 26 | 20 | 5 |
| A3 | 36.59 | 26 | 15 | 9 |
| A4 | 25 | 27 | 9 | 2 |
| A5 | 28.13 | 23 | 9 | 3 |
| A6 | 20 | 8 | 2 | 0 |
| A7 | 25 | 30 | 10 | 1 |
| A8 | 20 | 8 | 2 | 0 |
| A9 | 20 | 24 | 6 | 0 |
| A10 | 30 | 14 | 6 | 1 |
>TRINITY_DN108139_c0_g2_i1 from sample A5 / Example spliced isoformTACAGCTTCAGAGAATGGTTCTGGACCTAGAACAGACTCAGCATCACCTTCGCCTTCTGCCCATGTAGCACGTTCTCAGAGTTTTGCTGAAAGGCCACATGGGCAACCGCTTCCCCTGCCATCAGCACTGGGTCGTGCAGAAGGGTTCAGTTTGACTCAACCTTCTGGGAATAGGTCTGGGAGATTATCTCCTTCTTTAC
CACTTCCTTCACCTGATCAGGTACTGAGCAGGTTGGATATTGCAGATGTAGATGGAGGCTCATCTTCTACATCTGTTTCATGTGTGAGCTCTGTAAGTAGTGATGAAACTGCAGATTTGCAGCAGGACAATGGGCCAGGGCATGCTAATTATAAGCATTCTGATGCAGGCCTTGCTGGTAGAGTGATTGCTGATGGGCAT
GGAGGTTCTGGTGTGATGCATGCAGGGCAATCTCCCAAGGTTAGTAGGAAATATTCAAAACAGGATATACTGAGGCCTGGTAGTCCTCTTGCCAGCCATCATAATCTTTCATCTTCACCCAAAGGAGGATTCTTTAATACAGAGGCTCCGGCACATCTGCAAATTCCAGTTAATGGACTACTAGGGAATGTGCTAGACAG
TTCCATGTCTAGTCCTTCAAGAAGTCCAATGAGGGTTTATGGTTCTGAGCAATCTCCCAACAGTGCTTTCTGGGCTGCAAAATCCTATCCCGAGTTAGCTTTCTTTGGCTCAGGCCATTGTTCAAGTCCTGGTTCGGGTCACAATTCGGGCCCTAATTCCATGGGTGGAGATATGACTGGGCAACCATTTTGGCAGCAGA
GCAGAGGTAGCCCAGAATGTTCTCCCATTCCTAGCCCAAGAATGACAAGCGGTCCGAGCTCAAGAGTTCAGAGTGGGGCAGTTACACCTTTGCATCCTCGAGCTAGTGGAACAGCTCCCGAATCTCCAACTAGCTGGCCAGAAGAGAGAAGACACCCTGGCCACCGCTTGCCTCTACCACCCTTGCTTATTTCTAATTCA
TCACCTTATGCTATGTCCTGTTCAGCATCTGCTATGTCGTCGGCAGTACCCCGGAGTCCTGGCAGGGCAGACAATCCGCCAAGTCCTGGAGCTCGTTGGAAGAAGGGAAAATTGCTAGGAAGGGGGACGTTTGGACATGTTTATGCTGGTCTTAACAGTGAAAGTGGCAAAATGTGTGCGATGAAGGAAGTTACACTGTT
TGCTGATGATCCAAAGTCGAAGGAAAGTGTAAAGCAGTTAGCACAGGAAATAGCCTTGCTTAGTTCTCTCAGGCATAAGAACATAGTGCAGTACTATGGGAGTGAAACGATTGATGATAGGCTCTATATTTATCTGGAATATGTTTCTGGTGGGTCTATACACAAACTACTTCAAGAGTATGGCCAGTTTGGAGAACCAA
TTATTCGCAGCTATACACGACAGATTCTTGCGGGATTGGCGTATTTGCATGGCAAAAGTACTGTGCACAGGGACATCAAAGGAGCCAACATGCTGGTGGATCCAAATGGTCAAGTAAAGCTGGCAGACTTTGGCATGGCTAAACATATCACTGCACACTCCTGCC
>TRINITY_DN108139_c0_g2_i5 from sample A5 / Example unspliced isoform:TACAGCTTCAGAGAATGGTTCTGGACCTAGAACAGACTCAGCATCACCTTCGCCTTCTGCCCATGTAGCACGTTCTCAGAGTTTTGCTGAAAGGCCACATGGGCAACCGCTTCCCCTGCCATCAGCACTGGGTCGTGCAGAAGGGTTCAGTTTGACTCAACCTTCTGGGAATAGGTCTGGGAGATTATCTCCTTCTTTAC
CACTTCCTTCACCTGATCAGGTACTGAGCAGGTTGGATATTGCAGATGTAGATGGAGGCTCATCTTCTACATCTGTTTCATGTGTGAGCTCTGTAAGTAGTGATGAAACTGCAGATTTGCAGCAGGACAATGGGCCAGGGCATGCTAATTATAAGCATTCTGATGCAGGCCTTGCTGGTAGAGTGATTGCTGATGGGCAT
GGAGGTTCTGGTGTGATGCATGCAGGGCAATCTCCCAAGGTTAGTAGGAAATATTCAAAACAGGATATACTGAGGCCTGGTAGTCCTCTTGCCAGCCATCATAATCTTTCATCTTCACCCAAAGGAGGATTCTTTAATACAGAGGCTCCGGCACATCTGCAAATTCCAGTTAATGGACTACTAGGGAATGTGCTAGACAG
TTCCATGTCTAGTCCTTCAAGAAGTCCAATGAGGGTTTATGGTTCTGAGCAATCTCCCAACAGTGCTTTCTGGGCTGCAAAATCCTATCCCGAGTTAGCTTTCTTTGGCTCAGGCCATTGTTCAAGTCCTGGTTCGGGTCACAATTCGGGCCCTAATTCCATGGGTGGAGATATGACTGGGCAACCATTTTGGCAGCAGA
GCAGAGGTAGCCCAGAATGTTCTCCCATTCCTAGCCCAAGAATGACAAGCGGTCCGAGCTCAAGAGTTCAGAGTGGGGCAGTTACACCTTTGCATCCTCGAGCTAGTGGAACAGCTCCCGAATCTCCAACTAGCTGGCCAGAAGAGAGAAGACACCCTGGCCACCGCTTGCCTCTACCACCCTTGCTTATTTCTAATTCA
TCACCTTATGCTATGTCCTGTTCAGCATCTGCTATGTCGTCGGCAGTACCCCGGAGTCCTGGCAGGGCAGACAATCCGCCAAGTCCTGGAGCTCGTTGGAAGAAGGGAAAATTGCTAGGAAGGGGGACGTTTGGACATGTTTATGCTGGTCTTAACAGTGAAAGTGGCAAAATGTGTGCGATGAAGGAAGTTACACTGTT
TGCTGATGATCCAAAGTCGAAGGAAAGTGTAAAGCAGTTAGCACAGGAAATAGCCTTGCTTAGTTCTCTCAGGCATAAGAACATAGTGCAGTACTATGGGAGTGAAACGATTGATGATAGGCTCTATATTTATCTGGAATATGTTTCTGGTGGGTCTATACACAAACTACTTCAAGAGTATGGCCAGTTTGGAGAACCAA
TTATTCGCAGCTATACACGACAGATTCTTGCGGGATTGGCGTATTTGCATGGCAAAAGTACTGTGCACAGgtgcaactgatctggttttgatgctagtcaatcatagtagattttatgtcaaaacaagtttatttgccaaagtattgcatgcttctctgggtggattggtaatcaatgttttcgctgcagttgtggctta
ctagatattgtcactgtttttcactcttcatcatgatttgtaatattacagGGACATCAAAGGAGCCAACATGCTGGTGGATCCAAATGGTCAAGTAAAGCTGGCAGACTTTGGCATGGCTAAACATATCACTGCACACTCCTGCC