NA ----> NA
Intron 1 GTAGAAATTC ... AAAAGCGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 40 | 9 | 2 | 10 |
| A2 | 41.94 | 9 | 0 | 13 |
| A3 | 33.33 | 4 | 3 | 1 |
| A4 | 39.13 | 14 | 10 | 8 |
| A5 | 44.83 | 8 | 2 | 11 |
| A6 | 14.29 | 3 | 0 | 1 |
| A7 | 20 | 14 | 2 | 5 |
| A8 | 37.93 | 9 | 5 | 6 |
| A9 | 33.33 | 7 | 3 | 4 |
| A10 | 50 | 1 | 1 | 1 |
>TRINITY_DN97641_c0_g3_i2 from sample A4 / Example spliced isoformCGCGGTAAGGTGTTTTCTGTTAGTATGTTTTTTTTCGTAGGAAAGATTGACAGCCATTGATGGCTGTTACATGACCATGGAGAACTCTTCGGCCGTCGATGGTTTGTCCTCTCCATTATTGGTTAGCGGTGGCAGGTGGCGCGATCTCTTTGCAGAAGTCTTTGATTGTCGATTTGTCCTTAACAGAAGTCTTTGATTGT
CGATTTGTCCTTAGCAGGTGAGGTGGCATGCTTACGTATCCTCTTTCTCGACTGATCCTTGCTGCATTCCATTCAATTATATCCGCATACCAGGATAGGCGGTGAGGCTGCCATGCCTTTCTATTCCCAGTGATTCAGTGATTCAACATTCTGAATCCATCCATTTCTCGGTTCACCTGCACATCCTTCGACTGACGCCT
TCTTTCAGAGTGTAACAGAAGTATTTTTTTGTTCGTTAGTGCCATGTGAGAAAATGACTCAGGAGAATGTGGCGGAAATGGCAGAGAAGGGAAGGAGTTTTTCTTTAGTTCCGACTCTCGATCGATTTGACTAGGGCGCCTGCGTGACCGTCGATTTTGTTAGACGACCATCGATTCGATCCCGTCCGTCCATCCCATAT
GCTCGAAGTCCACCCGCTGCCTGCACCCCTTCCGAGGGTCTACAGTGAATTTTACAGTTGGCCAAGCAATGAGGTCTCTGATTGTTCACAGGGTTTAACTTGTTTAGTAAACAGTTTAGCTTTCATAGGCTGTGGAGAACACGTTTACCTTTGCTATTGGAAAGAGGATGTCAAAGGATTGAAGCCTGTAAATGAGAAAA
ATGTCTCCACCCAACTTGGTTTATTTTCCCAGCAGACAGGCTTTGGTCCCCTCCGGCCTTTTCTTGGAGCAGAGAAAAAGGGTTGCGCCCACAACAGCTCAGCCGTGGCAGTTTGCCTCTAAATTCGGCGGCCGTGAGTAATTTTACTTTAAATTTCTTGCTCTTCCAGTGTTCTTTTGATAACAGAGGCGCATTTTTCT
GCAAGGTCGGCTGTTACTAGAAACGGCCAATTAAGTCGCCTGCTGAACAACCAAGTATTTTCTCTATCAGCATGGTTATTACGATGTACCGGCTGACAAGGCCCAAGCTATTATGATTTGGCTGATAGTGGAAACTCTAGCTTTATAAAACCTGCAAATATTGCTCAACAAACCATTTGTGTTTCACCTGTAAGCGCTCC
GTTGAGATGGTGTCTATCGAGGAAAGACGAAGAGTTTGCGTGCTGGATGTTGGTTGGTATCGATCTGGTTGTTATATAGAGACTCCAAGTAATTTGCAAAGCACTAGGCTCATATTTTATGTTTTACTGTGATGTATGCATCCCGCTGTAGAAATGGAAGTAGGAAAGTGACATGTTTAGTACTTTATGTTTTACTTTGT
TTTTGTGCATCCTGTTGTGGAAATGGGAGTGGGAAATTGAGATGTTTAGTAGTTGATGGAAAAGTTAACAGAACCTAATCGTTGGTCGAATTGGCCGACCCTGAAAACTGGAACTGGGGAAAAAATTGGATCACAAAACTGGTCTACCAAAAATACATAAAAATATTTAAATTTTGAATATTTTTTTTTTATATATATTT
ATGTGCATTTATGTGACTCTAAATCATTATACACAAATTTGCAAAATTTGTCCTATAACAAGGAAAAGTGTATACAACCAAAATAACATTAAGTACACTCCATACACTCCATATCTGAATCAAAATACTATCAACAAAATGACTCTAAATGGCCTATAGAGTCCAAAAATATCTCAATACTAGTAAAGACTACATGATCT
AATCATATAACAGAATCATCTGAATCCCCAAC
>TRINITY_DN97641_c0_g3_i1 from sample A4 / Example unspliced isoform:CGCGGTAAGGTGTTTTCTGTTAGTATGTTTTTTTTCGTAGGAAAGATTGACAGCCATTGATGGCTGTTACATGACCATGGAGAACTCTTCGGCCGTCGATGGTTTGTCCTCTCCATTATTGGTTAGCGGTGGCAGGTGGCGCGATCTCTTTGCAGAAGTCTTTGATTGTCGATTTGTCCTTAACAGAAGTCTTTGATTGT
CGATTTGTCCTTAGCAGGTGAGGTGGCATGCTTACGTATCCTCTTTCTCGACTGATCCTTGCTGCATTCCATTCAATTATATCCGCATACCAGGATAGGCGGTGAGGCTGCCATGCCTTTCTATTCCCAGTGATTCAGTGATTCAACATTCTGAATCCATCCATTTCTCGGTTCACCTGCACATCCTTCGACTGACGCCT
TCTTTCAGAGTGTAACAGAAGTATTTTTTTGTTCGTTAGTGCCATGTGAGAAAATGACTCAGGAGAATGTGGCGGAAATGGCAGAGAAGGGAAGGAGTTTTTCTTTAGTTCCGACTCTCGATCGATTTGACTAGGGCGCCTGCGTGACCGTCGATTTTGTTAGACGACCATCGATTCGATCCCGTCCGTCCATCCCATAT
GCTCGAAGTCCACCCGCTGCCTGCACCCCTTCCGAGGGTCTACAGTGAATTTTACAGTTGGCCAAGCAATGAGGTCTCTGATTGTTCACAGGGTTTAACTTGTTTAGTAAACAGTTTAGCTTTCATAGGCTGTGGAGAACACGTTTACCTTTGCTATTGGAAAGAGGATGTCAAAGGATTGAAGCCTGTAAATGAGAAAA
ATGTCTCCACCCAACTTGGTTTATTTTCCCAGCAGACAGGCTTTGGTCCCCTCCGGCCTTTTCTTGGAGCAGAGAAAAAGGGTTGCGCCCACAACAGCTCAGCCGTGGCAGTTTGCCTCTAAATTCGGCGGCCGTGAGTAATTTTACTTTAAATTTCTTGCTCTTCCAGTGTTCTTTTGATAACAGAGGCGCATTTTTCT
GCAAGGTCGGCTGTTACTAGAAACGGCCAATTAAGTCGCCTGCTGAACAACCAAGTATTTTCTCTATCAGCATGGTTATTACGATGTACCGGCTGACAAGgtagaaattcctttatcaggccttgacaaaatgggtttaattcccctttctttgttatggtttagtacttgtgaactatatttgacgctgagctttattg
gaaaagcgcagGCCCAAGCTATTATGATTTGGCTGATAGTGGAAACTCTAGCTTTATAAAACCTGCAAATATTGCTCAACAAACCATTTGTGTTTCACCTGTAAGCGCTCCGTTGAGATGGTGTCTATCGAGGAAAGACGAAGAGTTTGCGTGCTGGATGTTGGTTGGTATCGATCTGGTTGTTATATAGAGACTCCAAG
TAATTTGCAAAGCACTAGGCTCATATTTTATGTTTTACTGTGATGTATGCATCCCGCTGTAGAAATGGAAGTAGGAAAGTGACATGTTTAGTACTTTATGTTTTACTTTGTTTTTGTGCATCCTGTTGTGGAAATGGGAGTGGGAAATTGAGATGTTTAGTAGTTGATGGAAAAGTTAACAGAACCTAATCGTTGGTCGA
ATTGGCCGACCCTGAAAACTGGAACTGGGGAAAAAATTGGATCACAAAACTGGTCTACCAAAAATACATAAAAATATTTAAATTTTGAATATTTTTTTTTTATATATATTTATGTGCATTTATGTGACTCTAAATCATTATACACAAATTTGCAAAATTTGTCCTATAACAAGGAAAAGTGTATACAACCAAAATAACAT
TAAGTACACTCCATACACTCCATATCTGAATCAAAATACTATCAACAAAATGACTCTAAATGGCCTATAGAGTCCAAAAATATCTCAATACTAGTAAAGACTACATGATCTAATCATATAACAGAATCATCTGAATCCCCAAC