NA ----> NA
Intron 1 GTCTTCTTCT ... AATGGTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 50.88 | 14 | 12 | 17 |
| A2 | 68 | 4 | 7 | 10 |
| A3 | 51.72 | 7 | 6 | 9 |
| A4 | 66.67 | 4 | 1 | 15 |
| A5 | 81.82 | 1 | 4 | 5 |
| A6 | 51.22 | 10 | 8 | 13 |
| A7 | 71.05 | 11 | 16 | 38 |
| A8 | 50 | 20 | 16 | 24 |
| A9 | 55 | 18 | 13 | 31 |
| A10 | 46.67 | 32 | 21 | 35 |
>TRINITY_DN47842_c0_g2_i5 from sample A10 / Example spliced isoformCTTTCAACTGTAAAGTGCGATACTTTCCATTTGCCACTCGTTTGGGAGGCGAATTTAAAAATACAATTGAAGGCGTCGGAGCGGAGAGAAGTTTTGGGTTTCCATACCACATTGCATTTTGTTTTGTGAGAATGAATTCAGCGGTTGGCAGTGTCTGAGGATCTGGGCAGTGCCTCGTTGGTCACGGTGTTGAGCATGCT
CTTAATGCCAGCAACACAGAGCTCGTGTCTTATGACCAAGTTGTCGGCAAGGTTTCAAAATTGTTCGTGGTTATCTGTTCTCATCGAATTTCAAATTTATAGTGAAGCTCCGAGTCAAATTGGATTAGCGAAGCAGTTTTATAAAGTTGCTTGAAGTCTTCCATGGTCAAATGAGTCCGAAAGGGGCGACTTACAGTATT
TCTGCCGAGAACAAACCTTAGTATTCGTTTTGGGGCGGTGTTCATAAATGGATTCTCCCGTGGGCGATTTTATAAGGACCCAAATACCAGATTGGGATGATGATGTGATAGCAACTGCAAGATTCAAGGCATTCAGCGGGCAGAGATCCGATTGGGAAGCGAGGTTTCAGTTCTGGAGAGGCCTCATCATCAAGGTAGCT
GGGCATTTGGGTCGCATTATAATCGATACAGAAGAGGAACGAGCTGCTCAAGTCTTGAGTTCTTTAGCACAAAACCACTGGTCTTCTTATTGTGTCACGACCATGGGAAGATTTGAAAGCCTTTGTGGAGGGTTTGAAGAAGCTGATGTGTTTATGAGCTATTTTGCAAATTGCAAAAGAGCTCAATACCTTCAAATCGA
TAAAGATGAACGTATCGAGGGTGTAAAAATAGCTTTGGTGCCAGTTCCCGTAACAAATGTTACACAACTGGATTACAATATGCTGCATCTGCATTGGACATTGGATAGGTTTGAAAAACAGCTCGAGGTCATTGATCGACGATGTGAAAAGTCAAAAAGCTTGGCATTGATAGCAAATAAGGTTGGAGACAAGCAAACTG
CTCTCAGACATATGCGGTACCTGAAGATAGGATTAAATAGTAAAGCAAAATGCACAGGATTTGTGGATAAAGTAGAAGAAGTCCTTGGGATGATTTCTGATGCTGAATCGACAAAGAAGGTTATTGAAGCTATTCAGTTGGGGGCACGATTAATAAAGGAACATGGTATCGGTGTTGAAGAAGTCCATGCATGTTTACAG
GATCTTGATGAGACTATAGCTTCACAAAAACAGATAGAAGATTCCTTGGAGGCAAAGTCATTTTCATCAGTTGACATAGAAGACAAAGACCTTGAGGAGGAATTTGCTAGACTTGAGATGGAACTAGAGGATGAACATCTATCAGTTCAGATTCCAAATATAGAGGAAAAATTGCCTGCTTTTGATGCTGTAAAACAAAC
ACAATCCCAGGAAGCGGCAGTCTCTTTGTGCCAGAGTTTATCAAAGCTGGAGCTTGAACCTGCTTAGGGCATTAACCTCAGCGTGGTAATTAGATAGGTTCCTGTGAGAGC
>TRINITY_DN47842_c0_g2_i4 from sample A10 / Example unspliced isoform:CTTTCAACTGTAAAGTGCGATACTTTCCATTTGCCACTCGTTTGGGAGGCGAATTTAAAAATACAATTGAAGGCGTCGGAGCGGAGAGAAGTTTTGGGTTTCCATACCACATTGCATTTTGTTTTGTGAGAATGAATTCAGCGGTTGGCAGTGTCTGAGGATCTGGGCAGTGCCTCGTTGGTCACGGTGTTGAGCATGCT
CTTAATGCCAGCAACACAGAGCTCGTGTCTTATGACCAAGTTGTCGGCAAGGTTTCAAAATTGTTCGTGGTTATCTGTTCTCATCGAATTTCAAATTTATAGTGAAGCTCCGAGTCAAATTGGATTAGCGAAGCAGTTTTATAAAGTTGCTTGAAGTCTTCCATGGTCAAATGAGTCCGAAAGGGGCGACTTACAGTATT
TCTGCCGAGAACAAACCTTAGTATTCGTTTTGGGGCGGTGTTCATAAATGGATTCTCCCGTGGGCGATTTTATAAGGACCCAAATACCAGATTGGGATGATGATGTGATAGCAACTGCAAGATTCAAGGCATTCAGCGGGCAGAGATCCGATTGGGAAGCGAGGTTTCAGTTCTGGAGAGGCCTCATCATCAAGGTAGCT
GGGCATTTGGGTCGCATTATAATCGATACAGAAGAGgtcttcttctccgccctgtcattttttgggttaaaactaaatggtttgttagaggaggcttgacacctctttgtctcaatcatgttttgatgtggagatcttttaaacaagagtgacctagcacatccaccgacatctcattttcagtggctgttcaaacaagt
agcaagttttataggaatatcaacatctcctattcaggatattgttgaagggaaacttgttgtggtatcaatggtgcagGAACGAGCTGCTCAAGTCTTGAGTTCTTTAGCACAAAACCACTGGTCTTCTTATTGTGTCACGACCATGGGAAGATTTGAAAGCCTTTGTGGAGGGTTTGAAGAAGCTGATGTGTTTATGA
GCTATTTTGCAAATTGCAAAAGAGCTCAATACCTTCAAATCGATAAAGATGAACGTATCGAGGGTGTAAAAATAGCTTTGGTGCCAGTTCCCGTAACAAATGTTACACAACTGGATTACAATATGCTGCATCTGCATTGGACATTGGATAGGTTTGAAAAACAGCTCGAGGTCATTGATCGACGATGTGAAAAGTCAAAA
AGCTTGGCATTGATAGCAAATAAGGTTGGAGACAAGCAAACTGCTCTCAGACATATGCGGTACCTGAAGATAGGATTAAATAGTAAAGCAAAATGCACAGGATTTGTGGATAAAGTAGAAGAAGTCCTTGGGATGATTTCTGATGCTGAATCGACAAAGAAGGTTATTGAAGCTATTCAGTTGGGGGCACGATTAATAAA
GGAACATGGTATCGGTGTTGAAGAAGTCCATGCATGTTTACAGGATCTTGATGAGACTATAGCTTCACAAAAACAGATAGAAGATTCCTTGGAGGCAAAGTCATTTTCATCAGTTGACATAGAAGACAAAGACCTTGAGGAGGAATTTGCTAGACTTGAGATGGAACTAGAGGATGAACATCTATCAGTTCAGATTCCAA
ATATAGAGGAAAAATTGCCTGCTTTTGATGCTGTAAAACAAACACAATCCCAGGAAGCGGCAGTCTCTTTGTGCCAGAGTTTATCAAAGCTGGAGCTTGAACCTGCTTAGGGCATTAACCTCAGCGTGGTAATTAGATAGGTTCCTGTGAGAGCTTCTGAAGATATGATTTAAATGACTTGGAGATTCAATTTTCGTTAG
ATGAAGGCACTCATCTCACATTCAACAGTTTCACATATTTATGTCATTGGATTTTGCAGATATTACTGTATCATATTTTAATGAGGTAAATAGTATGAACTTTGACATTTTCATTTTGTAAATGTTGAGATATCACTGTTGTTAAAGAGGGTCTTTCAGATCTGGACAGATTCAGAGGTTCTTGATTGGTCACATTACAA
ATCTGGACAATCCTTTTGCATCCTTCTCAGAGCAAAAGAAAGAGACAATAATCTTTCTTTATTCTAAAAGTGCTATTTATTGGATTTCTCTGGCCACTAAAAATAATGGGGAGAGAAACTGGTATTTTTGGCCTGAAATCCAGCAAAACTTGTTCTGGATGGATGGAATTGCAGATACCAGATGTTAACATTGCACAATC
CTATTGCGGTAGGGTGTTCGGGGGCACAGAATTCATTTCTACATTAAAAAAACTAATTTCATCAATCCAAAATTACAATTTTGGTAAAGGTTCCTCACCAGATGTTGGCGATGGAACACTGGAAAAAGGTTGAAATCATAGAATTTTAGCCTTCAATAATCTTTGTTGTCATTCTCTATGTGGACAAGGACTTTAATGGT
TTGCAGTTTTCTGACCATGAATCTTAGAGTAGGTTGTGCCAAAGTAATTTTAGATGTTTACTTGATTAAAGACATGTTGAAGGGTGTTTTTATAACATAACCATCTGATTGCATATATCTTATCTATTGGGCATCCAGAGATGCATAGAATTTCTTTACCTCAATATTTATTGCATCCATTCATAGCAAA
Intron 2 GTTAAAACTA ... AAATGTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 64.29 | 5 | 6 | 12 |
| A2 | 61.29 | 6 | 5 | 14 |
| A3 | 57.89 | 4 | 4 | 7 |
| A4 | 82.61 | 2 | 7 | 12 |
| A5 | 45.45 | 3 | 2 | 3 |
| A6 | 50 | 4 | 4 | 4 |
| A7 | 86.89 | 4 | 23 | 30 |
| A8 | 53.33 | 7 | 10 | 6 |
| A9 | 66.1 | 10 | 18 | 21 |
| A10 | 66.2 | 12 | 23 | 24 |
>TRINITY_DN119824_c0_g1_i6 from sample A2 / Example spliced isoformGCGAATTTAAAAATACAATTGAAGGCGTCGGAGCGGAGAGAAGTTTTGGGTTTCCATACCGCATTGCATTTTGTTTTGTGAGAATGAATTCAGCGGTTGGCAGTGTCTGAGGATCTGGGTAGTGCCTCGTTGGTCACGGTGTTGAGCATGCTATTAATGCCAGCAATACAGAGCTCGTGTCTTATGACCAATGTGTCGGC
AAGGTTTCAAAATTGTTCGTGGTTCTCTGTTCTCATCGAATTTCAAATTTATAGTGAAGCCCCGAGTCAAATTGGATTAGTGAAGCAGTTTTATAAAGTTGCTTGAAGTCTTCCATGGTCAAATGAGTCCGAAAGGGGCGACTTACAGTATTTCTGCCGAGAACAAACCTTAGTATTCGTTTTGGGGCGGTGTTCATAAA
TGGATTCTCCCGTGGGCGATTTTATAAGGACCCAAATACCAGATTGGGATAATGATGTGATAGCAACTGCAAGATTCAAGGCATTCAGCGGGCAAAGATCCGATTGGGAAGCGAGGTTTCAGTTCTGGAGAGGCCTCATCATCAAGGTAGCTGGGCATTTGGGTCGCATTATAATCGATACAGAAGAGGTCTTCTTCTCC
GCCCTGTCATTTTTTGGATGTGGAGATCTTTTAAACAAGAGTGACCTAGCACATCCACCGACATCTCATTTTCAGTGGCTGTTCAAACAAGTAGCAAGTTTTATAGGAATATCAACATCTCCTATTCAGGATATTGTTGAAGGGAAACTTGTTGTGGTATCAATGGTGCAGGAACGAGCTGCGCAAGTCGTGAGTTCTTT
AGCACAAAACCACTGGTCTTCTTATTGTGTCACGACCATGGGAAGATTTGAAAGCCTTTGTGGAGGGTTTGAAGAAGCTGATGTGTTTATGAGCTATTTTGCAAATTGCAAAAGAGCTCAATACCTTCTAATCGATAAAGATGAACGTATCGAGGGTGTAAAAATAGCTTTGGTGCCAGTTCCCGTAACAAATGTTACAC
AACTGGATTACAATATGCTGCATCTGCATTGGACATTGGATAGGCTTCAAAAACAGCTCGAGGTCATTGATCGGCGATGTGAGAAGTCAAAAAGCTTGGCATTGATAGCAAATAAGGTTGGAGACAAGCAAACTGCTCTCAGACATATGCGGTACCTGAAGATAGGGTTAGATAGTAAAGCAAAATGCACAGGATTTGTG
GATAAAGTAGAAGAAGTCCTTGGGATGATTTCTGATGCTGAATCGACAAAGAAGGTTAGTGAAGCGATTCAGTTGGGGGCACGATTAATAAAGGAACATGGTATCGGTGTTGAAGAAGTCCATGCATGTTTACAGGATCTTGATGAGACTATAGCTTCACAAAAACAGATAGAAGATTCCTTGGAGGCAAAGTCATTTTC
ATCAGTTGACATAGAAGACAAAGACCTTGAGGAGGAATTTGCTAGACTTGAGATGGAACTAGAGGATGAACATCTATCAGTTCAGATTCCAAATATAGAGGAAAAATTGCCTGCTTTTGATGCTGTAAAACAAACACAATCCCAGGAAGCGGCAGTCTCTTTGTGCCAGAGTTTATCAAAGCTGGAGCTTGAACCTGCTT
AGGGCATTAACCTCAGCGTGGTAATTAGATAGGTTCCTGTGAGAGCCTTCTGAAGATATGATTTAAATGACTTGGAGATTCAATTTTCGTTAGATGAAGGCACTCATCTCACATTCAACAGTTTCACATATTTATGTCATTGGATTTTGCAGATATTACTGTAATCAGATTTTAATTAGGTAAATGGTATGAACTTTGAC
ATTTTCATTTTTTAAATGTTGAGATATCACTTTTGTTAAAGAGGGTCTTTCAGATCTGGACAGATTCAGAGGTTCTTGATTGGTCACATTACAAATCTGGACAATCCTTTTGCATCCTTCTCAGAGCAAAAGAAAGAGACAATAATCTTTCTTTATTCTAAAAGTGCTTTTTATTTGATTTCTCTGGCCACTCAAAATAA
TGGGGAGAGAAACTGGTATTTTTGGCCTGAAATCCAGCAACACTTGTTCTGGATGGATGGAATTGCAGATACCAGATGTTAACATTCCACAATCCTATTGCGGTAGGGTGTTCGGGGGCACAGAATTCATTTCTACATTAAAAAAACTAATTTCATCAATCCAAAATTACAATTTTGGTAAAGGTTCCTCACCAGATGTT
GGCGATGGAACACTGGAAAAAGGTTGAAATCATAGAATTTTAGCCTTCAATAATCTTTTTTGTCATTCTCTATGTGGACAAGGACTTTAATGGTTTGCAGTTTTCTGATCATGAATCTTAGAGTAGGTTGTACC
>TRINITY_DN119824_c0_g1_i4 from sample A2 / Example unspliced isoform:GCGAATTTAAAAATACAATTGAAGGCGTCGGAGCGGAGAGAAGTTTTGGGTTTCCATACCGCATTGCATTTTGTTTTGTGAGAATGAATTCAGCGGTTGGCAGTGTCTGAGGATCTGGGTAGTGCCTCGTTGGTCACGGTGTTGAGCATGCTATTAATGCCAGCAATACAGAGCTCGTGTCTTATGACCAATGTGTCGGC
AAGGTTTCAAAATTGTTCGTGGTTCTCTGTTCTCATCGAATTTCAAATTTATAGTGAAGCCCCGAGTCAAATTGGATTAGTGAAGCAGTTTTATAAAGTTGCTTGAAGTCTTCCATGGTCAAATGAGTCCGAAAGGGGCGACTTACAGTATTTCTGCCGAGAACAAACCTTAGTATTCGTTTTGGGGCGGTGTTCATAAA
TGGATTCTCCCGTGGGCGATTTTATAAGGACCCAAATACCAGATTGGGATAATGATGTGATAGCAACTGCAAGATTCAAGGCATTCAGCGGGCAAAGATCCGATTGGGAAGCGAGGTTTCAGTTCTGGAGAGGCCTCATCATCAAGGTAGCTGGGCATTTGGGTCGCATTATAATCGATACAGAAGAGGTCTTCTTCTCC
GCCCTGTCATTTTTTGGgttaaaactaaatggtttgttagaggaggcttgacacctctttgtctcaatcatgttttgcttgaaatgtacagATGTGGAGATCTTTTAAACAAGAGTGACCAGGCACATCCACCGACATCTCATTTTCAGTGGCTGTTCAAACAAGTAGCAAGTTTTATAGGAATATCAACATCTCCTATT
CAGGATATTGTTGAAGGGAAACTTGTTGTGGTATCAATGGTGCAGGAACGAGCTGCGCAAGTCGTGAGTTCTTTAGCACAAAACCACTGGTCTTCTTATTGTGTCACGACCATGGGAAGATTTGAAAGCCTTTGTGGAGGGTTTGAAGAAGCTGATGTGTTTATGAGCTATTTTGCAAATTGCAAAAGAGCTCAATACCT
TCTAATCGATAAAGATGAACGTATCGAGGGTGTAAAAATAGCTTTGGTGCCAGTTCCCGTAACAAATGTTACACAACTGGATTACAATATGCTGCATCTGCATTGGACATTGGATAGGCTTCAAAAACAGCTCGAGGTCATTGATCGGCGATGTGAGAAGTCAAAAAGCTTGGCATTGATAGCAAATAAGGTTGGAGACA
AGCAAACTGCTCTCAGACATATGCGGTACCTGAAGATAGGGTTAGATAGTAAAGCAAAATGCACAGGATTTGTGGATAAAGTAGAAGAAGTCCTTGGGATGATTTCTGATGCTGAATCGACAAAGAAGGTTAGTGAAGCGATTCAGTTGGGGGCACGATTAATAAAGGAACATGGTATCGGTGTTGAAGAAGTCCATGCA
TGTTTACAGGATCTTGATGAGACTATAGCTTCACAAAAACAGATAGAAGATTCCTTGGGCAAGTTTACTGTCATAGCCATTTACTTTGTGATTAAATTTGCTATTATTATTGCATGTAATTTACTAGTTGCACAGAGTTGGGACCATATAACATGAGCTAATGATGTTTCAAATCAACTTTGTTTTGAAAGTTCATTTAT
ATGATAATGATTTTTTCTCATGTAAGATGTTTTTTTGAGTGATCTAATTCTTTCTTGCTAAGTCACATGACACAATGACATGGTACATGGAGGGC
Intron 3 GTCTTCTTCT ... TTTTTGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 37.66 | 22 | 13 | 1 |
| A2 | 22.69 | 11 | 3 | 1 |
| A3 | 27.25 | 19 | 7 | 1 |
| A4 | 4.08 | 24 | 1 | 0 |
| A5 | 34.34 | 7.7 | 4 | 2 |
| A6 | 32.26 | 21 | 10 | 1 |
| A7 | 29.64 | 35 | 14 | 6 |
| A8 | 39.56 | 25 | 16 | 6 |
| A9 | 23.39 | 37.3 | 11 | 3 |
| A10 | 39.89 | 36.3 | 23 | 7 |
>TRINITY_DN44368_c0_g1_i6 from sample A6 / Example spliced isoformGTAAAGTGCGATACTTTCCATTTGCCACTCGTTTGGGAGGCGAATTTAAAAATACAATTGAAGGCGTCGGAGCGGAGAGAAGTTTTGGGTTTCCATACCACATTGCATTTTGTTTTGTGAGAATGAATTCAGCGGTTGGCAGTGTCTGAGGATCTGGGCAGTGCCTCGTTGGTCACGGTGTTGAGCATGCTATTAATGCC
AGCAATACAGAGCTCGTGTCTTATGACCAAGTTGTCGGCAAGGTTTCAAAATTGTTCGTGGTTATCTGTTCTCATCGAATTTCAAATTTATAGTGAAGCTCCGAGTCAAATTGGATTAGCGAAGCAGTTTTATAAAGTTGCTTGAAGTCTTCCATGGTCAAATGAGTCCGAAAGGGGCGACTTATAGTATTTCTGCCGAG
AACAAACCTTAGTATTCGTTTTGGGGCGGTGTTCATAAATGGATTCTCCCGTGGGCGATTTTATAAGGACCCAAATACCAGATTGGGATGATGATGTGATAGCAACTGCAAGATTCAAGGCATTCAGCGGGCAGAGATCCGATTGGGAAGCGAGGTTTCAGTTCTGGAGGGGCCTCATCATCAAGGTAGCTGGGCATTTG
GGTCGCATTATAATCGATACAGAAGAGGTTAAAACTAAATGGTTTGTTAGAGGAGGCTTGACACCTCTTTGTCTCAATCATGTTTTGCTTGAAATGTACAGATGTGGAGATCTTTTAAACAAGAGTGACCAGGCACATCCACCGACATCTCATTTTCAGTGGCTGTTCAAACAAGTAGCAAGTTTTATAGGAATATCAAC
ATCTCCTATTCAGGATATTGTTGAAGGGAAACTTGTTGTGGTATCAATGGTGCAGGAACGAGCTGCTCAAGTCTTGAGTTCTTTAGCACAAAACCACTGGTCTTCTTATTGTGTCACGACCATGGGAAGATTTGAAAGCCTTTGTGGAGGGTTTGAAGAAGCTGATGTGTTTATGAGCTATTTTGCAAATTGCAAAAGAG
CTCAATACCTTCAAATCGATAAAGATGAACGTATCGAGGGTGTAAAAATAGCTTTGGTGCCAGTTCCCGTAACAAATGTTACACAACTGGATTACAATATGCTGCATCTGCATTGGACATTGGATAGGTTTGAAAAACAGCTCGAGGTCATTGATCGACGATGTGAAAAGTCAAAAAGCTTGGCATTGATAGCAAATAAG
GTTGGAGACAAGCAAACTGCTCTCAGACATATGCGGTACCTGAAGATAGGATTAAATAGTAAAGCAAAATGCACAGGATTTGTGGATAAAGTAGAAGAAGTCCTTGGGATGATTTCTGATGCTGAATCGACAAAGAAGGTTATTGAAGCTATTCAGTTGGGGGCACGATTAATAAAGGAACATGGTATTGGTGTTGAAGA
AGTCCATGCATGTTTACAGGATCTTGATGAGACTATAGCTTCACAAAAACAGATAGAAGATTCCTTGGAGGCAAAGTCATTTTCATCAGTTGACATAGAAGACAAAGACCTTGAGGAGGAATTTGCTAGACTTGAGATGGAACTAGAGGATGAACATCTATCAGTTCAGATTCCAAATATAGAGGAAAAATTGCCTGCTT
TTGATGCTGTAAAACAAACACAATCCCAGGAAGCGGCAGTCTCTTTGTGCCAGAGTTTATCAAAGCTGGAGCTTGAACCTGCTTAGGGCATTAACCTCAGCGTGGTAATTAGATAGGTTCCTGTGAGAGCTTCTGAAGATATGATTTAAATGACTTGGAGATTCAATTTTCGTTAGATGAAGGCACTCATCTCACATTCA
ACAGTTTCACATATTTATGTCATTGGATTTTGCAGATATTACTGTATCATATTTTAATGAGGTAAATAGTATGAACTTTGACATTTTCATTTTTTAAATGTTGAGATATCACTTTTGTTAAAGAGGGTCTTTCAGATCTGGACAGATTCAGAGGTTCTTGATTGGTCACATTACAAATCTGGACAATCCTTTTGCATCCT
TCTCAGAGCAAAAGAAAGAGACAATAATCTTTCTTTATTCTAAAAGTGCTATTTATTGGATTTCTCTGGCCACTAAAAATAATGGGGAGAGAAACTGGTATTTTTGGCCTGAAATCCAGCAACACTTGTTCTGGATGGATGGAATTGCAGATACCAGATGTTAACATTGCACAATCCTATTGCGGTAGGGTGTTCGGGGG
CACAGAATTCATTTCTACATTAAAAAAACTAATTTCATCAATCCAAAATTACAATTTTGGTAAAGGTTCCTCACCAGATGTTGGCGATGGAACACTGGAAAAAGGTTGAAATCATAGAATTTTAGCCTTCAATAATCTTTTTTGTCATTCTCTATGTGGACAAGGACTTTAATGGTTTGCAGTTTTCTGACCATGAATCT
TAGAGTAGGTTGTGCCAAAGTAATTTTAGATGTTTACTTGATTAAAGACATGTTGAAGGGTGTTTTTATAACATAACCATCTG
>TRINITY_DN44368_c0_g1_i7 from sample A6 / Example unspliced isoform:GTAAAGTGCGATACTTTCCATTTGCCACTCGTTTGGGAGGCGAATTTAAAAATACAATTGAAGGCGTCGGAGCGGAGAGAAGTTTTGGGTTTCCATACCACATTGCATTTTGTTTTGTGAGAATGAATTCAGCGGTTGGCAGTGTCTGAGGATCTGGGCAGTGCCTCGTTGGTCACGGTGTTGAGCATGCTATTAATGCC
AGCAATACAGAGCTCGTGTCTTATGACCAAGTTGTCGGCAAGGTTTCAAAATTGTTCGTGGTTATCTGTTCTCATCGAATTTCAAATTTATAGTGAAGCTCCGAGTCAAATTGGATTAGCGAAGCAGTTTTATAAAGTTGCTTGAAGTCTTCCATGGTCAAATGAGTCCGAAAGGGGCGACTTATAGTATTTCTGCCGAG
AACAAACCTTAGTATTCGTTTTGGGGCGGTGTTCATAAATGGATTCTCCCGTGGGCGATTTTATAAGGACCCAAATACCAGATTGGGATGATGATGTGATAGCAACTGCAAGATTCAAGGCATTCAGCGGGCAGAGATCCGATTGGGAAGCGAGGTTTCAGTTCTGGAGGGGCCTCATCATCAAGGTAGCTGGGCATTTG
GGTCGCATTATAATCGATACAGAAGAGgtcttcttctccgccctgtcattttttggcagGTTAAAACTAAATGGTTTGTTAGAGGAGGCTTGACACCTCTTTGTCTCAATCATGTTTTG
Intron 4 GTTAAAACTA ... AATGGTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 61.64 | 14 | 28 | 17 |
| A2 | 72.22 | 5 | 16 | 10 |
| A3 | 69.57 | 7 | 23 | 9 |
| A4 | 84.31 | 4 | 28 | 15 |
| A5 | 86.67 | 1 | 8 | 5 |
| A6 | 66.04 | 9 | 22 | 13 |
| A7 | 79.63 | 11 | 48 | 38 |
| A8 | 57.14 | 21 | 32 | 24 |
| A9 | 68.97 | 18 | 49 | 31 |
| A10 | 57.33 | 32 | 51 | 35 |
>TRINITY_DN44170_c0_g1_i4 from sample A9 / Example spliced isoformAGCGTGTGCTTTCAACTGTAAAGTGCGATACTTTCCATTTGCCACTCGTTTGGGAGGCGAATTTAAAAATACAATTGAAGGCGTCGGAGCGGAGAGAAGTTTTGGGTTTCCATACCGCATTGCATTTTGTTTTGTGAGAATGAATTCAGCGGTTGGCAGTGTCTGAGGATCTGGGCAGTGCCTCGTTGGTCACGGTGTTG
AGCATGCTATTAATGCCAGCAATACAGAGCTCGTGTCTTATGACCAAGTTGTCGGCAAGGTTTCAAAATTGTTCGTGGTTATCTGTTCTCATCGAATTTCAAATTTATAGTGAAGCTCCGAGTCAAATTGGATTAGCGAAGCAGTTTTATAAAGTTGCTTGAAGTCTTCCATGGTCAAATGAGTCCGAAAGGGGCGACTT
ACAGTATTTCTGCCGAGAACAAACCTTAGTATTCGTTTTGGGGCGGTGTTCATAAATGGATTCTCCCGTGGGCGATTTTATAAGGACCCAAATACCAGATTGGGATGATGATGTGATAGCAACTGCAAGATTCAAGGCATTCAGCGGGCAAAGATCCGATTGGGAAGCGAGGTTTCAGTTCTGGAGAGGCCTCATCATCA
AGGTAGCTGGGCATTTGGGTCGCATTATAATCGATACAGAAGAGGAACGAGCTGCTCAAGTCTTGAGTTCTTTAGCACAAAACCACTGGTCTTCTTATTGTGTCACGACCATGGGAAGATTTGAAAGCCTTTGTGGAGGGTTTGAAGAAGCTGATGTGTTTATGAGCTATTTTGCAAATTGCAAAAGAGCTCAATACCTT
CAAATCGATAAAGATGAACGTATCGAGGGTGTAAAAATAGCTTTGGTGCCAGTTCCCGTAACAAATGTTACACAACTGGATTACAATATGCTGCATCTGCATTGGACATTGGATAGGTTTGAAAAACAGCTCGAGGTCATTGATCGACGATGTGAAAAGTCAAAAAGCTTGGCATTGATAGCAAATAAGGTTGGAGACAA
GCAAACTGCTCTCAGACATATGCGGTACCTGAAGATAGGATTAAATAGTAAAGCAAAATGCACAGGATTTGTGGATAAAGTAGAAGAAGTCCTTGGGATGATTTCTGATGCTGAATCGACAAAGAAGGTTATTGAAGCTATTCAGTTGGGGGCACGATTAATAAAGGAACATGGTATTGGTGTTGAAGAAGTCCATGCAT
GTTTACAGGATCTTGATGAGACTATAGCTTCACAAAAACAGATAGAAGATTCCTTGGAGGCGAAGTCATTTTCATCAGTTGACATAGAAGACAAAGACCTTGAGGAGGAATTTGCTAGACTTGAGATGGAACTAGAGGATGAACATCTATCAGTTCAGATTCCAAATATAGAGGAAAAATTGCCTGCTTTTGATGCTGTA
AAACAAACACAATCCCAGGAAGCGGCAGTCTCTTTGTGCCAGAGTTTATCAAAGCTGGAGCTTGAACCTGCTTAGGGCATTAACCTCAGCGTGGTAATTAGATAGGTTCCTGTGAGAGCTTCTGAAGATATGATTTAAATGACTTGGAGATTCAATTTTCGTTAGATGAAGGCACTCATCTCACATTCAACAGTTTCACA
TATTTATGTCATTGGATTTTGCAGATATTACTGTATCATATTTTAATGAGGTAAATAGTATGAACTTTGACATTTTCATTTTGTAAATGTTGAGATATCACTGTTGTTAAAGAGGGTCTTTCAGATCTGGACAGATTCAGAGGTTCTTGATTGGTCACATTACAAATCTGGACAATCCTTTTGCATCCTTCTCAGAGCAA
AAGAAAGAGACAATAATCTTTCTTTATTCTAAAAGTGCTATTTATTGGATTTCTCTGGCCACTAAAAATAATGGGGAGAGAAACTGGTATTTTTGGCCTGAAATCCAGCAAAACTTGTTCTGGATGGATGGAATTGCAGATACCAGATGTTAACATTGCACAATCCTATTGCGGTAGGGTGTTCGGGGGCACAGAATTCA
TTTCTACATTAAAAAAACTAATTTCATCAATCCAAAATTACAATTTTGGTAAAGGTTCCTCACCAGATGTTGGCGATGGAACACTGGAAAAAGGTTGAAATCATAGAATTTTAGCCTTCAATAATCTTTTTTGTCATTCTCTATGTGGACAAGGACTTTAATGGTTTGCAGTTTTCTGACCATGAATCTTAGAGTAGGTT
GTGCCAAAGTAATTTTAGATGTTTACTTGATTAAAGACATGTTGAAGGGTGTTTTTATAACATAACCATCTGATTGCATATATCTTATCTATTGGGCATCCAGAGATGCATATAATTTCTTTACCTCAAATATTTATTGCATCCATTCATAGCGTCAATGGGTTAAGGTTGTAAACGCCATTCTTTAACTCCTATGTACT
CAC
>TRINITY_DN44170_c0_g1_i2 from sample A9 / Example unspliced isoform:AGCGTGTGCTTTCAACTGTAAAGTGCGATACTTTCCATTTGCCACTCGTTTGGGAGGCGAATTTAAAAATACAATTGAAGGCGTCGGAGCGGAGAGAAGTTTTGGGTTTCCATACCGCATTGCATTTTGTTTTGTGAGAATGAATTCAGCGGTTGGCAGTGTCTGAGGATCTGGGCAGTGCCTCGTTGGTCACGGTGTTG
AGCATGCTATTAATGCCAGCAATACAGAGCTCGTGTCTTATGACCAAGTTGTCGGCAAGGTTTCAAAATTGTTCGTGGTTATCTGTTCTCATCGAATTTCAAATTTATAGTGAAGCTCCGAGTCAAATTGGATTAGCGAAGCAGTTTTATAAAGTTGCTTGAAGTCTTCCATGGTCAAATGAGTCCGAAAGGGGCGACTT
ACAGTATTTCTGCCGAGAACAAACCTTAGTATTCGTTTTGGGGCGGTGTTCATAAATGGATTCTCCCGTGGGCGATTTTATAAGGACCCAAATACCAGATTGGGATGATGATGTGATAGCAACTGCAAGATTCAAGGCATTCAGCGGGCAAAGATCCGATTGGGAAGCGAGGTTTCAGTTCTGGAGAGGCCTCATCATCA
AGGTAGCTGGGCATTTGGGTCGCATTATAATCGATACAGAAGAGgttaaaactaaatggtttgttagaggaggcttgacacctctttgtctcaatcatgttttgcttgaaatgtacagatgtggagatcttttaaacaagagtgaccaggcacatccaccgacatctcattttcagtggctgttcaaacaagtagcaagt
tttataggaatatcaacatctcctattcaggatattgttgaagggaaacttgttgtggtatcaatggtgcagGAACGAGCTGCTCAAGTCTTGAGTTCTTTAGCACAAAACCACTGGTCTTCTTATTGTGTCACGACCATGGGAAGATTTGAAAGCCTTTGTGGAGGGTTTGAAGAAGCTGATGTGTTTATGAGCTATTT
TGCAAATTGCAAAAGAGCTCAATACCTTCAAATCGATAAAGATGAACGTATCGAGGGTGTAAAAATAGCTTTGGTGCCAGTTCCCGTAACAAATGTTACACAACTGGATTACAATATGCTGCATCTGCATTGGACATTGGATAGGCTTCAAAAACAGCTCGAGGTCATTGATCGGCGATGTGAGAAGTAATAGCCACATC
TTTGGCCTTTGTCATCATTAATAGCGGGGAAAATGGAATATTCAATGTCCACTTTGCTCATAAAAGCCAGGATAATATATTTCAACGAAAATTTCATTGAGACTGGTCTTACGAACCAGACTCGGGTTAAATTAGATAACTACAGGGAGATTGGCTTCCTATATAATATCAATGATGTATTGAATTGTTTTCCTTGCTGT
GATTTTACAATCTTAGATACCAATGAGTCTGGTCACAATCCACTTAGTTGATCAATGCTTATTGTAAAAGCAGAGGATCTTATTTGTAATTGAGATATTTGAAAGAAAATATTTAATTTACAGTCATTGAAAGCATATACATGATGAGTTTAAAGTAAGAG