sp|Q9SD20|MS5L2_ARATH ----> Protein POLLENLESS 3-LIKE 2


Intron 1 GTTTTTGTAG ... GGAAATGCAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A162.987.513.512
A251.841216.39
A348.7317.88.325.5
A452.4815.518.316
A552.94463
A647.4214520.3
A741.254727.538.3
A851.39182315
A946.254.546.847
A1035.9251.530.827



>TRINITY_DN133334_c0_g1_i8 from sample A1 / Example spliced isoform
GCGAGGACGAGGATGCATAAATTTCAGAAGCGCGACTGCCGATTCTCCTTGGATAATCCCAGCTCAGATCCAGATTTCCAGAGCTCTCAATCTCCATACAATTCGGATCCAAATGGTCAAAAGATTTGGGACGGTTTCCGTGAATCTTTAGATGAGAATTAATGTTCTATGGCCTGGCAACGCAGAGCAAACGTTGATTG
ATTTCCAGTGGCCAACTGATGAAAATGCCAAAGACTATCATGGCGAACTTCCGTTAACTGCGCGAAGAACATAAGGTCATTGATTTCTAATGGCCGACTAATCCAAAGATTGTTAAGGCGAACCGGCATTTACGGGGCATAGGGTTTTTAGGACCGTAAAGGTTTTGGACATTCTTATTCAGCGGTGAAATTGACTGCAA
AATAAAGGAAATGACAGTCGGAGAAGAGTCTTCGCCGTTTTCTCCAAAGAAGCATGAACCGCACTATATTCCACAGAACAACACGTCCCCTACTTCTGCTCAGGCAAAGCCGATCGGCTTCTTGAAAGCGAAAGGAAAAACCGATCCATTTCATGCTATGTACAAGGTTCCCGTCGGAGACACACCCTATGGCAAAGCCA
AACACCGTCAGCTTGTGGAAAAGGACCCGGCTGGCGCCATCGCATTGTTCTGGGAAGCTATTAATGCAGGAGACCGAGTTGACAGCGCATTGAAGGACATGGCCGTGGTGATGAAGCAGCAGAACCGACCACTGGAAGCCATTGAAGCCATTAAGTCCTTCAGGCACCTTTGCTCGCAAAAAGCGCAAGAGTCTCTTGAT
AATGTGCTCATTGATCTATTTAAGAAATGTGGAAGATTGGATGAGCAGATTCGCCTGTTGAAGCATAAGCTCCTTTTAATTCAGCAAGGATCTGCATTCAATGGCGAATTCACCAAAACTGGACGGTCACATGGAAGGAAGTTTAAGGTTTCCATAAAGCAAGAGACCACTCGGCTTCTGGAAAGCACAGGTATTGGAGC
CAGATGAGAACAAGGCCTG


>TRINITY_DN133334_c0_g1_i6 from sample A1 / Example unspliced isoform:
GCGAGGACGAGGATGCATAAATTTCAGAAGCGCGACTGCCGATTCTCCTTGGATAATCCCAGCTCAGATCCAGATTTCCAGAGCTCTCAATCTCCATACAATTCGGATCCAAATGGTCAAAAGAGCAAACGTTGATTGATTTCCAGTGGCCAACTGATGAAAATGCCAAAGACTATCATGGCGAACTTCCGTTAACTGCG
CGAAG
gtttttgtagctatgggaacgctttgaaaattctccctcagcagtgaaagaaaacttaaatgccggattcttaaggcgtttaagttatattcttctgtgtttcaaatttcagacgttttccctgaatctttagctctgaatttgtgttctctggcctggaaatgcagAACATAAGGTCATTGATTTCTAATGGCC
GACTAATCCAAAGATTGTTAAGGCGAACCGGCATTTACGGGGCATAGGGTTTTTAGGACCGTAAAGGTTTTGGACATTCTTATTCAGCGGTGAAATTGACTGCAAAATAAAGGAAATGACAGTCGGAGAAGAGTCTTCGCCGTTTTCTCCAAAGAAGCATGAACCGCACTATATTCCACAGAACAACACGTCCCCTACTT
CTGCTCAGGCAAAGCCGATCGGCTTCTTGAAAGCGAAAGGAAAAACCGATCCATTTCATGCTATGTACAAGGTTCCCGTCGGAGACACACCCTATGGCAAAGCCAAACACCGTCAGCTTGTGGAAAAGGACCCGGCTGGCGCCATCGCATTGTTCTGGGAAGCTATTAATGCAGGAGACCGAGTTGACAGCGCATTGAAG
GACATGGCCGTGGTGATGAAGCAGCAGAACCGACCACTGGAAGCCATTGAAGCCATTAAGTCCTTCAGGCACCTTTGCTCGCAAAAAGCGCAAGAGTCTCTTGATAATGTGCTCATTGATCTATTTAAGAAATGTGGAAGATTGGATGAGCAGATTCGCCTGTTGAAGCATAAGCTCCTTTTAATTCAGCAAGGATCTGC
ATTCAATGGCGAATTCACCAAAACTGGACGGTCACATGGAAGGAAGTTTAAGGTTTCCATAAAGCAAGAGACCACTCGGCTTCTGGTACATAGCATCCACACCCTTCCTGTTCTATTAGTATTTCTGTCTAACAGTGGTTGAATGAGAATGTAATGGGTGTTGGCAGAGTAATTTGGGATTGGCATATATGCAACAACAT
GACTACTGTTCTGCAGAAATCGTTTACAGGAAAGCACAGGTATTGGAGCCAGGTGAGAACAAGGCCTGTAATCTAAGCGTTTGTCTGATGAGGCAAGGAAAGGTGGAGGAGGCCATGGGTTTTCTTCAGGGTGTGCTGAACAACAATAAGAATTCTACGAACTATAATCATAATAACAGTAGAGAAAAACCGAAGTCACT
GGATCGTGTCGAAGCGTTGTTGAAGGAAATTATGGATTCTAAAACAAACGGAAGCAATGGGGAGGAATGTCAATCAGCAACATCACGTGTTGAAGATTTGGAGTGGTTTTGGTGTTATGAAGGGGGAGTAGAAGAAGGGTTGCAAGAAGGAGGAGGACAAAAGGGATTGGGTGTGGCAGTTGAGCTCAATCGCAAACGAA
GTCGACTGAGAGTTTTCGAAGAGATGACATCTGCTCATAACAAGCGGTGCCATCTTCATGGAAGCAACATTCAGCCTGCTATGCAGCATTAAGAGCGGTAGAGTACCCTTTGCATTTGCGATGTATATAAATAAATGTATTTAACAGTGTATATCACGTGGGTACCATTAATGCTGCGTAGCGGGTTGCCCGTTCTCATG
GTGGTAAACTGGGTGACTGGGTCCACATGTAAGGCCCAATAATTGAGTGGAGTTGTATAGCTTTGCAAGATTATAATCGTAGTTGATTATACCTATGTTGCTGAGTAATGCAAAAACTCACTTGGGTGAGGTCTATGGTTAACTCGTAATAATAAAACTGTGTTCGTGTCTTTTCG




Intron 2 GTGAAAAGAC ... GGAAACGCAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A165.5820.54532
A265.961631.529
A365.9517.53431
A484.86841.548
A577.164.513.816
A665.462136.542
A771.523289.568.5
A866.7234741
A975.6732.5101.598.5
A1070.4233.578.577



>TRINITY_DN47686_c0_g1_i3 from sample A7 / Example spliced isoform
GATTTGAACGTTCTCATTCAGCGAGCATAAGGTCATTGATTTCTAATGGCCGACTAATACAAATCTTGTTAAGGCGAATCGGCGTTTACGGTGCGTAGGGTTTTTACTTTTTAGCACCGGAAAGGTTTTGGAGATCCTCATTCAGCGGTGAAAGCAGACTGCAAAATCAAAGGAAATGACAATCGGACCCGATTACGTTA
AACCGCAGTAACCACGGAACAAGACGTCCCCTCCCTCGGTTCAGGCAAAGCCAATCTGCTTCATGAAAGCGCAGGGGAAAAACGATCCATTTCATGCTATGTACAAGGTCCCGGTCGGAGACACTCCCTATGCCAAAGCGAAACACCTTCAGCTTGTGGAGAAGGACCCGGCTGGCGCCATCGCATTGTTCTGGGAAGCT
ATTAATGCTAGAGACCGAATTGACAGCGCATTAAAGGACATGGCCGTGGTGATGAAGGAGCAGAATCGGTCACTGGAAGCCATCGAGGCTATTAAGTCCTTCA


>TRINITY_DN47686_c0_g1_i1 from sample A7 / Example unspliced isoform:
GGTTGGGTGATTGGGAGGAAAGATTGTTACCCTCCCCACCCAGGTTCAATTCTTGCTGAAACGAGCCCAGAGGTCCTACCTGAAGTTGACATGGCCTTGGAAGTCGGCAAGCAATGTATGTAGACGGAATCAAGGACAGATTCATTGCATCTGTTGTCGCCCCTCCCATTTCCCCTCCTCCCACAAAAAAGACAACGAAT
CATAAATCTTCGGAAGAACCAGTACCGACTCTCCATGCATAATCCCGTCTCCGATCCAGATTTTCAGAGCTTAGTTTCGATGCATCTCGGAGCCAAACGGTCAAGAATTGGGACGGTTTCTTGAATCTTTAATTGAGAATTAGGGTTCTATGGCCTGGAAACGCAAGGCAGAAGTTGATTGATTTCTAGTGGCTGACTGA
TGCAAAGACTGTTAAGGCAAACTTCCGTTTACTGCGTGTAGGTTTTTAGGAGCGGGAATGATTTGAACGTTCTCATTCAGCGgtgaaaagacttcttaaatgccggaatcttgacgcgtttaagtttatattcttctgtgtttcagacttcggactgtttccctgtatatttagctctgaattaagttctttaacctgga
aacgcag
AGCATAAGGTCATTGATTTCTAATGGCCGACTAATACAAATCTTGTTAAGGCGAATCGGCGTTTACGGTGCGTAGGGTTTTTACTTTTTAGCACCGGAAAGGTTTTGGAGATCCTCATTCAGCGGTGAAAGCAGACTGCAAAATCAAAGGAAATGACAATCGGACCCGATTACGTTAAACCGCAGTAACCACG
GAACAAGACGTCCCCTCCCTCGGTTCAGGCAAAGCCAATCTGCTTCATGAAAGCGCAGGGGAAAAACGATCCATTTCATGCTATGTACAAGGTCCCGGTCGGAGACACTCCCTATGCCAAAGCGAAACACCTTCAGCTTGTGGAGAAGGACCCGGCTGGCGCCATCGCATTGTTCTGGGAAGCTATTAATGCTAGAGACC
GAATTGACAGCGCATTAAAGGACATGGCCGTGGTGATGAAGGAGCAGAATCGGTCACTGGAAGCCATCGAGGCTATTAAGTCCTTCA




Intron 3 GTTTTTTGGC ... GGAAATGCAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A16571412
A259.099179
A347.8318825
A452.38151716
A550462
A647.1714520
A744.37422938
A853.42172415
A943.15564045
A1035523125



>TRINITY_DN122999_c1_g2_i5 from sample A3 / Example spliced isoform
ACGAGGACGAGGACGAGGACAAGGATGCATAAATTTCAGAAGAGCGACTGCCGATTCTCCTTGGATAATCCCAGCTCAGATCCAGATTTCCAGAGCTCTCAATCTCCATACAATTCGGAGTCAAAAGAGCAAACGTTGATTGATTTCCAGTGGCCAACTGATGAAAATGCCAAAGACTATCATGGCGAACTTCCGTTAAC
TGCGCGAAGAGCATAAGGTCATTGATTTCTAATGGCCGACTAATCCAAAGATTGTTAAAGCGAACCGGCATTTACGGGGCGTAGGGTTTTTAGGACCGTAAAGGTTTTGGACATTCTTATTCAGCGGTGAAATTGACTGCAAAATAAAGGAAATGACAGTCGGAGAGGAGTCTTCGCCGTTTTCTCCAAAGAAGCATGAA
CCGCACTATCCACAGAACAACACGTCCCCTACTTCTGCTCAGGCAAAGCCGATCGGCTTCATGAAAGCGAAAGGAAAAACCGATCCATTTCATGCTATGTACAAGGTTCCCGTAGGAGACACACCCT


>TRINITY_DN122999_c1_g2_i15 from sample A3 / Example unspliced isoform:
ACGAGGACGAGGACGAGGACAAGGATGCATAAATTTCAGAAGAGCGACTGCCGATTCTCCTTGGATAATCCCAGCTCAGATCCAGATTTCCAGAGCTCTCAATCTCCATACAATTCGGAGTCAAAAGGAATCTTCAGGCGTTTACGTCCATATTGTTCCTTGTTTCAAATTTGGGACGGTTTCCGTGAATCTTTAGATGA
GAATTAATGTTCTCTGGCCTGGAAACGCAGAGCAAACGTTGATTGATTTCCAGTGGCCAACTGATGAAAATGCCAAAGACTATCATGGCGAACTTCCGTTAACTGCGCGAAGgttttttggctatgggaacgctttgaacgttctacctcagcagtgaaagaaaacttaaatgccggattcttaaggcgtttaagttata
ttcttctgtgtttcaaatttcagacgttttccctgaatctttagctctgaatttgtgttctctggcctggaaatgcag
AGCATAAGGTCATTGATTTCTAATGGCCGACTAATCCAAAGATTGTTAAAGCGAACCGGCATTTACGGGGCGTAGGGTTTTTAGGACCGTAAAGGTTTTGGACATTCTTATTCAGCGGTGAA
ATTGACTGCAAAATAAAGGAAATGACAGTCGGAGAGGAGTCTTCGCCGTTTTCTCCAAAGAAGCATGAACCGCACTATCCACAGAACAACACGTCCCCTACTTCTGCTCAGGCAAAGCCGATCGGCTTCATGAAAGCGAAAGGAAAAACCGATCCATTTCATGCTATGTACAAGGTTCCCGTAGGAGACACACCCT




Intron 4 GTAGGTTTTT ... GGAAACGCAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A174.1144832
A276.6293029
A374.73102831
A479.89103048
A588.891.5516
A668.54173242
A773.8927.58468.5
A870.9518.54741
A972.5937.59498.5
A1073.26308577



>TRINITY_DN133334_c0_g1_i12 from sample A1 / Example spliced isoform
AGGCAAACTTCCGTTTACTGCGTAGCATAAGGTCATTGATTTCTAATGGCCGACTAATACAAATCTTGTTAAGGCGAATCGGCGTATACGGTGCGTAGGGTTCTTACTTTTTAGCACCGGAAAGGTTTTGGAGATCCTCATTCAGCGGTGAAAGCAGACTGCAAAATCAAAGGAAATGACAATCGGACCCGATTACGTTA
AACCGCAGTAACCACGGAACAAGACGTCCCCTCCCTCGGTTCAGGCAAAGCCAATCTGCTTCATGAAA


>TRINITY_DN133334_c0_g1_i11 from sample A1 / Example unspliced isoform:
AAGCAATGTATGTAGACGGAATCGAGGACAGATTCATTGCATCTGTTGTCGCCCCTCCCATTTCCCCTCCTCCCACCAAAAAGACAACGAATCATAAATCTTCGGAAGAACCAGTACCGACTCTCCATGCATAATCCCGTCTCCGATCCAGATTTTCAGAGCTTAGTTTCGATGCATCTCGGAGCCAAACGGTCAAGAAA
TGGGACGGTTTCTTGAATCTTTGATTGAGAATTAGGGTTCTATGGCCTGGAAACGCAAGGCAGAAGTTGATTGATTTCTAGTGGCTGACTGATGCAAAGACTGTTAAGGCAAACTTCCGTTTACTGCGTgtaggtttttaggagcgggaatgatttgaacgttctcattcagcggtgaaaagacttcttaaatgccggaa
tcttgacgcgtttaagtttatattcttctgtgtttcagacttcggactgtttccctgtatatttagctctgaattaagttctttaacctggaaacgcag
AGCATAAGGTCATTGATTTCTAATGGCCGACTAATACAAATCTTGTTAAGGCGAATCGGCGTATACGGTGCGTAGGGTTCTTACTTTTTAGCACCGGAAAG
GTTTTGGAGATCCTCATTCAGCGGTGAAAGCAGACTGCAAAATCAAAGGAAATGACAATCGGACCCGATTACGTTAAACCGCAGTAACCACGGAACAAGACGTCCCCTCCCTCGGTTCAGGCAAAGCCAATCTGCTTCATGAAAGCGCAGGGGAAAAACGATCCATTTCATGCTATGTACAAGGTCCCGGTCGGAGACAC
TCCCTATGCCAAAGCGAAACACCTTCAGCTTGTGGAGAAGGACCCGGCTGGCGCCATCGCATTGTTCTGGGAAGCTATTAATGCTAGAGACAGAATTGACAGCGCATTGAAGGACATGGCCGTGGTGATGAAGGAGCAGAATCGGTCACTGGAAGCCATCGAGGCTATTAAGTCCTTCAGGCACCTTTGCTCGCAAAAAG
CGCAAGAGTCTCTTGATAATGTGCTCATTGAACTCTTTAAGAAATGTGGAAGATTGGATGAGCAGATTAGCCTGTTGAAGCACAAGCTCAGCTTAATTCAGCAAGGAGCTTCATTCAAAGACAAATCCACCAAAACTGCACGGTCAGGTGGAAGGAAGGTTCAGGTTTCCCTAGAGCAAGAGACCACTCGGCTTCTGAGT
AATTTGGGATGGGCGTATATGCAACAGCATGACTACTGCTCGGCAGAAAGCGTTTACAGGAAAGCACAGGTATTGCAGCCAGATGAGAACAAGGCCTGTAATCTAGGCGTCTGTCTGATGAGGCAAGGGAAGCTGGAGGAGGCTATGGGTTTTCTACAAGCTGTGCTGAACAACAATAAGAGTTCTGCGAACTATAATCA
TAATAACAGTAGAGAAAAACCGAAGTCACTGGATCGTGTCGAAGCGTTGTTGAAGGAAATTATGGATTCTAAAACAAACGGAAGCAATGGGGAGGAATGTCAATCAGCAACATCACGTGTTGAAGATTTGGAGTGGTTTTGGTGTTATGAAGGGGGAGTAGAAGAAGGGTTGCAAGAAGGAGGAGGACAAAAGGGATTGG
GTGTGGCAGTTGAGCTCAATCGCAAACGAAGTCGACTGAGAGTTTTCGAAGAGATGACATCTGCTCATAACAAGCGGTGCCATCTTCATGGAAGCAACATTCAGCCTGCTATGCAGCATTAAGAGCGGTAGAGTACCCTTTGCATTTGCGATGTATATAAATAAATGTATTTAACAGTGTATATCACGTGGGTACCATTA
ATGCTGCGTAGCGGGTTGCCCGTTCTCATGGTGGTAAACTGGGTGACTGGGTCCACATGTAAGGCCCAATAATTGAGTGGAGTTGTATAGCTTTGCAAGATTATAATCGTAGTTGATTATACCTATGTTGCTGAGTAATGCAAAAACTCACTTGGGTGAGGTCTATGGTTAACTCGTAATAATAAAACTGTGTTCGTGTC
TTTTCG




Intron 5 GTACATAGCA ... GTGTTGGCAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A112.3157115
A210.5368133
A318.1845119
A424.18693113
A56.92722
A616.321413718
A716.252506235
A816.932116422
A920.6131210854
A1018.662427932



>TRINITY_DN133334_c0_g1_i10 from sample A1 / Example spliced isoform
GCGAGGACGAGGACAAGGATGCATAAATTTCAGAAGAGCGACTGCCGATTCTCCTTGGATAATCCCAGCTCAGATCCAGATTTCCAGAGCTCTCAATCTCCATACAATTCGGAGTCAAAAGGAATCTTCAGGCGTTTACGTTCATATTGTTCCTTGTTTCAAATTTGGGACGGTTTCCGTGAATCTTTAGATGAGAATTA
ATGTTCTCTGGCCTGGAAACGCAGAGCAAACGTTGATTGATTTCCAGTGGCCAACTGATGAAAATGCCAAAGACTATCATGGCGAACTTCCGTTAACTGCGCGAAGGTTTTTTAGCTATGGGAACGCTTTGAACGTTCTACCTCAGCAGTGAAAGAAAACTTAAATGCCGGATTCTTAAGGCGTTTAAGTTATATTCTTC
TGTGTTTCAAATTTCAGACGTTTTCCCTGAATCTTTAGCTCTGAATTTGTGTTCTCTGGCCTGGAAATGCAGAGCATAAGGTCATTGATTTCTAATGGCCGACTAATCCAAAGATTGTTAAGGCGAACCGGCATTTACGGGGCATAGGGTTTTTAGGACCGTAAAGGTTTTGGACATTCTTATTCAGCGGTGAAATTGAC
TGCAAAATAAAGGAAATGACAGTCGGAGAAGAGTCTTCGCCGTTTTCTCCAAAGAAGCATGAACCGCACTATATTCCACAGAACAACACGTCCCCTACTTCTGCTCAGGCAAAGCCGATCGGCTTCTTGAAAGCGAAAGGAAAAACCGATCCATTTCATGCTATGTACAAGGTTCCCGTCGGAGACACACCCTATGGCAA
AGCCAAACACCGTCAGCTTGTGGAAAAGGACCCGGCTGGCGCCATCGCATTGTTCTGGGAAGCTATTAATGCAGGAGACCGAGTTGACAGCGCATTGAAGGACATGGCCGTGGTGATGAAGCAGCAGAACCGACCACTGGAAGCCATTGAAGCCATTAAGTCCTTCAGGCACCTTTGCTCGCAAAAAGCGCAAGAGTCTC
TTGATAATGTGCTCATTGATCTATTTAAGAAATGTGGAAGATTGGATGAGCAGATTCGCCTGTTGAAGCATAAGCTCCTTTTAATTCAGCAAGGATCTGCATTCAATGGCGAATTCACCAAAACTGGACGGTCACATGGAAGGAAGTTTAAGGTTTCCATAAAGCAAGAGACCACTCGGCTTCTGAGTAATTTGGGATTG
GCATATATGCAACAACATGACTACTGTTCTGCAGAAATCGTTTACAGGAAAGCACAGGTATTGGAGCCAGATGAGAACAAGGCCTGCAATCTAAGCGTTTGTCTGATGAGGCAAGGAAAGGTGGAGGAGGCCATGGGTTTTCTTCAGGGTGTGCTGAACAACAATAAGAATTCTACGAACTATAATCATAATAACAGTAG
AGAAAAACCGAAGTCACTGGATCGTGTCGAAGCGTTGTTGAAGGAAATTATGGATTCTAAAACAAACGGAAGCAATGGGGAGGAATGTCAATCAGCAACATCACGTGTTGAAGATTTGGAGTGGTTTTGGTGTTATGAAGGGGGAGTAGAAGAAGGGTTGCAAGAAGGAGGAGGACAAAAGGGATTGGGTGTGGCAGTTG
AGCTCAATCGCAAACGAAGTCGACTGAGAGTTTTCGAAGAGATGACATCTGCTCATAACAAGCGGTGCCATCTTCATGGAAGCAACATTCAGCCTGCTATGCAGCATTAAGAGCGGTAGAGTACCCTTTGCATTTGCGATGTATATAAATAAATGTATTTAACAGTGTATATCACGTGGGTACCATTAATGCTGCGTAGC
GGGTTGCCCGTTCTCATGGTGGTAAACTGGGTGACTGGGTCCACATGTAAGGCCCAATAATTGAGTGGAGTTGTATAGCTTTGCAAGATTATAATCGTAGTTGATTATACCTATGTTGCTGAGTAATGCAAAAACTCACTTGGGTGAGGTCTATGGTTAACTCGTAATAATAAAACTGTGTTCGTGTCTTTTCG


>TRINITY_DN133334_c0_g1_i6 from sample A1 / Example unspliced isoform:
GCGAGGACGAGGATGCATAAATTTCAGAAGCGCGACTGCCGATTCTCCTTGGATAATCCCAGCTCAGATCCAGATTTCCAGAGCTCTCAATCTCCATACAATTCGGATCCAAATGGTCAAAAGAGCAAACGTTGATTGATTTCCAGTGGCCAACTGATGAAAATGCCAAAGACTATCATGGCGAACTTCCGTTAACTGCG
CGAAGGTTTTTGTAGCTATGGGAACGCTTTGAAAATTCTCCCTCAGCAGTGAAAGAAAACTTAAATGCCGGATTCTTAAGGCGTTTAAGTTATATTCTTCTGTGTTTCAAATTTCAGACGTTTTCCCTGAATCTTTAGCTCTGAATTTGTGTTCTCTGGCCTGGAAATGCAGAACATAAGGTCATTGATTTCTAATGGCC
GACTAATCCAAAGATTGTTAAGGCGAACCGGCATTTACGGGGCATAGGGTTTTTAGGACCGTAAAGGTTTTGGACATTCTTATTCAGCGGTGAAATTGACTGCAAAATAAAGGAAATGACAGTCGGAGAAGAGTCTTCGCCGTTTTCTCCAAAGAAGCATGAACCGCACTATATTCCACAGAACAACACGTCCCCTACTT
CTGCTCAGGCAAAGCCGATCGGCTTCTTGAAAGCGAAAGGAAAAACCGATCCATTTCATGCTATGTACAAGGTTCCCGTCGGAGACACACCCTATGGCAAAGCCAAACACCGTCAGCTTGTGGAAAAGGACCCGGCTGGCGCCATCGCATTGTTCTGGGAAGCTATTAATGCAGGAGACCGAGTTGACAGCGCATTGAAG
GACATGGCCGTGGTGATGAAGCAGCAGAACCGACCACTGGAAGCCATTGAAGCCATTAAGTCCTTCAGGCACCTTTGCTCGCAAAAAGCGCAAGAGTCTCTTGATAATGTGCTCATTGATCTATTTAAGAAATGTGGAAGATTGGATGAGCAGATTCGCCTGTTGAAGCATAAGCTCCTTTTAATTCAGCAAGGATCTGC
ATTCAATGGCGAATTCACCAAAACTGGACGGTCACATGGAAGGAAGTTTAAGGTTTCCATAAAGCAAGAGACCACTCGGCTTCTGgtacatagcatccacacccttcctgttctattagtatttctgtctaacagtggttgaatgagaatgtaatgggtgttggcagAGTAATTTGGGATTGGCATATATGCAACAACAT
GACTACTGTTCTGCAGAAATCGTTTACAGGAAAGCACAGGTATTGGAGCCAGGTGAGAACAAGGCCTGTAATCTAAGCGTTTGTCTGATGAGGCAAGGAAAGGTGGAGGAGGCCATGGGTTTTCTTCAGGGTGTGCTGAACAACAATAAGAATTCTACGAACTATAATCATAATAACAGTAGAGAAAAACCGAAGTCACT
GGATCGTGTCGAAGCGTTGTTGAAGGAAATTATGGATTCTAAAACAAACGGAAGCAATGGGGAGGAATGTCAATCAGCAACATCACGTGTTGAAGATTTGGAGTGGTTTTGGTGTTATGAAGGGGGAGTAGAAGAAGGGTTGCAAGAAGGAGGAGGACAAAAGGGATTGGGTGTGGCAGTTGAGCTCAATCGCAAACGAA
GTCGACTGAGAGTTTTCGAAGAGATGACATCTGCTCATAACAAGCGGTGCCATCTTCATGGAAGCAACATTCAGCCTGCTATGCAGCATTAAGAGCGGTAGAGTACCCTTTGCATTTGCGATGTATATAAATAAATGTATTTAACAGTGTATATCACGTGGGTACCATTAATGCTGCGTAGCGGGTTGCCCGTTCTCATG
GTGGTAAACTGGGTGACTGGGTCCACATGTAAGGCCCAATAATTGAGTGGAGTTGTATAGCTTTGCAAGATTATAATCGTAGTTGATTATACCTATGTTGCTGAGTAATGCAAAAACTCACTTGGGTGAGGTCTATGGTTAACTCGTAATAATAAAACTGTGTTCGTGTCTTTTCG




Intron 6 GTTAACCTTC ... GCGGATACAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A121.5591725
A218.5244310
A329.581001142
A424.2172323
A52637213
A623.1493528
A723.022141964
A822.15123835
A922.072332966
A1019.722321357



>TRINITY_DN133334_c0_g1_i2 from sample A1 / Example spliced isoform
AAGCAATGTATGTAGACGGAATCGAGGACAGATTCATTGCATCTGTTGTCGCCCCTCCCATTTCCCCTCCTCCCACCAAAAAGACAACGAATCATAAATCTTCGGAAGAACCAGTACCGACTCTCCATGCATAATCCCGTCTCCGATCCAGATTTTCAGAGCTTAGTTTCGATGCATCTCGGAGCCAAACGGTCAAGAAA
TGGGACGGTTTCTTGAATCTTTGATTGAGAATTAGGGTTCTATGGCCTGGAAACGCAAGGCAGAAGTTGATTGATTTCTAGTGGCTGACTGATGCAAAGACTGTTAAGGCAAACTTCCGTTTACTGCGTGTAGGTTTTTAGGAGCGGGAATGATTTGAACGTTCTCATTCAGCGGTGAAAAGACTTCTTAAATGCCGGAA
TCTTGACGCGTTTAAGTTTATATTCTTCTGTGTTTCAGACTTCGGACTGTTTCCCTGTATATTTAGCTCTGAATTAAGTTCTTTAACCTGGAAACGCAGAGCATAAGGTCATTGATTTCTAATGGCCGACTAATCCAAAGATTGTTAAGGCGAACCGGCATTTACGGGGCATAGGGTTTTTAGGACCGTAAAGGTTTTGG
ACATTCTTATTCAGCGGTGAAATTGACTGCAAAATAAAGGAAATGACAGTCGGAGAAGAGTCTTCGCCGTTTTCTCCAAAGAAGCATGAACCGCACTATCCACAGAACAACACGTCCCCTACTTCTGCTCAGGCAAAGCCGATCGGCTTCTTGAAAGCGAAAGGAAAAACCGATCCATTTCATGCTATGTACAAGGTTCC
CGTCGGAGACACACCCTATGGCAAAGCCAAACACCTTCAGCTTGTGGAAAAGGACCCGGCTGGCGCCATCGCATTGTTCTGGGAAGCTATTAATGCAGGAGACCGAGTTGACAGCGCATTGAAGGACATGGCCGTGGTGATGAAGCAGCAGAACCGACCACTGGAAGCCATTGAAGCCATTAAGTCCTTCAGGCACCTTT
GCTCGCAAAAAGCGCAAGAGTCTCTTGATAATGTGCTCATTGATCTATTTAAGAAATGTGGAAGATTGGATGAGCAGATTCGCCTGTTGAAGCATAAGCTCCTTTTAATTCAGCAAGGATCTGCATTCAATGGCGAATTCACCAAAACTGGACGGTCACATGGAAGGAAGTTTAAGGTTTCCATAAAGCAAGAGACCACT
CGGCTTCTGGAAAGCACAGGTATTGGAGCCAGATGAGAACAAGGCCTGCAATCTAAGCGTTTGTCTGATGAGGCAAGGAAAGGTGGAGGAGGCCATGGGTTTTCTTCAGGGTGTGCTGAACAACAATAAGAATTCTACGAACTATAATCATAATAACAGTAGAGAAAAACCGAAGTCACTGGATCGTGTCGAAGCGTTGT
TGAAGGAAATTATGGATTCTAAAACAAACGGAAGCAATGGGGAGGAATGTCAATCAGCAACATCACGTGTTGAAGATTTGGAGTGGTTTTGGTGTTATGAAGGGGGAGTAGAAGAAGGGTTGCAAGAAGGAGGAGGACAAAAGGGATTGGGTGTGGCAGTTGAGCTCAATCGCAAACGAAGTCGACTGAGAGTTTTCGAA
GAGATGACATCTGCTCATAACAAGCGGTGCCATCTTCATGGAAGCAACATTCAGCCTGCTATGCAGCATTAAGAGCGGTAGAGTACCCTTTGCATTTGCGATGTATATAAATAAATGTATTTAACAGTGTATATCACGTGGGTACCATTAATGCTGCGTAGCGGGTTGCCCGTTCTCATGGTGGTAAACTGGGTGACTGG
GTCCACATGTAAGGCCCAATAATTGAGTGGAGTTGTATAGCTTTGCAAGATTATAATCGTAGTTGATTATACCTATGTTGCTGAGTAATGCAAAAACTCACTTGGGTGAGGTCTATGGTTAACTCGTAATAATAAAACTGTGTTCGTGTCTTTTCG


>TRINITY_DN133334_c0_g1_i5 from sample A1 / Example unspliced isoform:
AAGCAATGTATGTAGACGGAATCGAGGACAGATTCATTGCATCTGTTGTCGCCCCTCCCATTTCCCCTCCTCCCACCAAAAAGACAACGAATCATAAATCTTCGGAAGAACCAGTACCGACTCTCCATGCATAATCCCGTCTCCGATCCAGATTTTCAGAGCTTAGTTTCGATGCATCTCGGAGCCAAACGGTCAAGAAA
TGGGACGGTTTCTTGAATCTTTGATTGAGAATTAGGGTTCTATGGCCTGGAAACGCAAGGCAGAAGTTGATTGATTTCTAGTGGCTGACTGATGCAAAGACTGTTAAGGCAAACTTCCGTTTACTGCGTGTAGGTTTTTAGGAGCGGGAATGATTTGAACGTTCTCATTCAGCGGTGAAAAGACTTCTTAAATGCCGGAA
TCTTGACGCGTTTAAGTTTATATTCTTCTGTGTTTCAGACTTCGGACTGTTTCCCTGTATATTTAGCTCTGAATTAAGTTCTTTAACCTGGAAACGCAGAGCATAAGGTCATTGATTTCTAATGGCCGACTAATCCAAAGATTGTTAAGGCGAACCGGCATTTACGGGGCATAGGGTTTTTAGGACCGTAAAGGTTTTGG
ACATTCTTATTCAGCGGTGAAATTGACTGCAAAATAAAGGAAATGACAGTCGGAGAAGAGTCTTCGCCGTTTTCTCCAAAGAAGCATGAACCGCACTATCCACAGAACAACACGTCCCCTACTTCTGCTCAGGCAAAGCCGATCGGCTTCTTGAAAGCGAAAGGAAAAACCGATCCATTTCATGCTATGTACAAGGTTCC
CGTCGGAGACACACCCTATGGCAAAGCCAAACACCTTCAGgttaaccttcgttcttatattgtccattttgctttgagcaagctattttattcatggctctttgtgaaagttcaaagtttttaaatttggcggatacagCTTGTGGAAAAGGACCCGGCTGGCGCCATCGCATTGTTCTGGGAAGCTATTAATGCAGGAG
ACCGAGTTGACAGCGCATTGAAGGACATGGCCGTGGTGATGAAGCAGCAGAACCGACCACTGGAAGCCATTGAAGCCATTAAGTCCTTCAGGCACCTTTGCTCGCAAAAAGCGCAAGAGTCTCTTGATAATGTGCTCATTGATCTATTTAAGAAATGTGGAAGATTGGATGAGCAGATTCGCCTGTTGAAGCATAAGCTC
CTTTTAATTCAGCAAGGATCTGCATTCAATGGCGAATTCACCAAAACTGGACGGTCACATGGAAGGAAGTTTAAGGTTTCCATAAAGCAAGAGACCACTCGGCTTCTGGAAAGCACAGGTATTGGAGCCAGATGAGAACAAGGCCTGTAATCTAAGCGTTTGTCTGATGAGGCAAGGAAAGGTGGAGGAGGCCATGGGTT
TTCTTCAGGGTGTGCTGAACAACAATAAGAATTCTACGAACTATAATCATAATAACAGTAGAGAAAAACCGAAGTCACTGGATCGTGTCGAAGCGTTGTTGAAGGAAATTATGGATTCTAAAACAAACGGAAGCAATGGGGAGGAATGTCAATCAGCAACATCACGTGTTGAAGATTTGGAGTGGTTTTGGTGTTATGAA
GGGGGAGTAGAAGAAGGGTTGCAAGAAGGAGGAGGACAAAAGGGATTGGGTGTGGCAGTTGAGCTCAATCGCAAACGAAGTCGACTGAGAGTTTTCGAAGAGATGACATCTGCTCATAACAAGCGGTGCCATCTTCATGGAAGCAACATTCAGCCTGCTATGCAGCATTAAGAGCGGTAGAGTACCCTTTGCATTTGCGA
TGTATATAAATAAATGTATTTAACAGTGTATATCACGTGGGTACCATTAATGCTGCGTAGCGGGTTGCCCGTTCTCATGGTGGTAAACTGGGTGACTGGGTCCACATGTAAGGCCCAATAATTGAGTGGAGTTGTATAGCTTTGCAAGATTATAATCGTAGTTGATTATACCTATGTTGCTGAGTAATGCAAAAACTCAC
TTGGGTGAGGTCTATGGTTAACTCGTAATAATAAAACTGTGTTCGTGTCTTTTCG




Intron 7 GTAGCTTCGA ... CGTGTTTCAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A115.252536
A227.6634620
A310.22214
A412.52115
A521.431142
A613.163382
A721.14972527
A817.86461010
A915.251252025
A1016.391021426



>TRINITY_DN48658_c0_g2_i4 from sample A10 / Example spliced isoform
TGGTGATTGGGAGGAAAGATTGTTACCCTCCCCACCCAGGTTCAATTCTTGCTGAAACGAGCCCAGAGGTCCTACCTGAAGTTGACATGGCCTTGGAAGTCGGCAAGCAATGTATGTAGACGGAATCAAGGACAGATTCATTGCATCTGTTGTCGCCCCTCCCATTTCCCCTCCTCCCACAAAAAAGACAACGAATCATA
AATCTTCGGAAGAACCAGCACCGACTCTCCATGCATAATCCCGTCTCCGATCCAGATTTTCAGAGCTTAGTTTCGATGCATCTCGGAGCCAAACGGTCAAGAATTGGGACGGTTTCTTGAATCTTTAATTGAGAATTAGGGTTCTATGGCCTGGAAACGCAAGGCAGAAGTTGATTGATTTCTAGTGGCCGACTGATGCA
AAGACTGTTAAGGCAAACTTCCGTTTACTGCGTGTAGGTTTTTAGGAGCGGGAATGATTTGAACGTTCTCATTCAGCGGTGAAAAGACTTCTTAAATGCCGGAATCTTGACGCGTTTAAGTTTATATTCTTCTGTGTTTCAGACTTCGGACTGTTTCCCTGTATATTTAGCTCTGAATTAAGTTCTTTAACCTGGAAACG
CAGAGCATAAGGTCATTGATTTCTAATGGCCGACTAATACAAATCTTGTTAAGGCGAATCGGCGTATACGGTGCGTAGGGTTCTTACTTTTTAGCACCGGAAAGGTTTTGGAGATCCTCATTCAGCGGTGAAAGCAGACTGCAAAATCAAAGGAAATGACAATCGGACCCGATTACGTTAAACCGCAGTAACCACGGAAC
AAGACGTCCCCTCCCTCGGTTCAGGCAAAGCCAATCTGCTTCATGAAAGCGCAGGGGAAAAACGATCCATTTCATGCTATGTACAAGGTCCCGGTCGGAGACACTCCCTATGCCAAAGCGAAACACCTTCAGCTTGTGGAGAAGGACCCGGCTGGCGCCATCGCATTGTTCTGGGAAGCTATTAATGCTAGAGACAGAAT
TGACAGCGCATTGAAGGACATGGCCGTGGTGATGAAGGAGCAGAATCGGTCACTGGAAGCCATCGAGGCTATTAAGTCCTTCAGGCACCTTTGCTCGCAAAAAGCGCAAGAGTCTCTTGATAATGTGCTCATTGAACTCTTTAAGAAATGTGGAAGATTGGATGAGCAGATTAGCCTGTTGAAGCACAAGCTCAGCTTAA
TTCAGCAAGGAGCTTCATTCAAAGACAAATCCACCAAAACTGCACGGTCAGGTGGAAGGAAGGTTCAGGTTTCCCTAGAGCAAGAGACCACTCGGCTTCTG


>TRINITY_DN48658_c0_g2_i3 from sample A10 / Example unspliced isoform:
TGGTGATTGGGAGGAAAGATTGTTACCCTCCCCACCCAGGTTCAATTCTTGCTGAAACGAGCCCAGAGGTCCTACCTGAAGTTGACATGGCCTTGGAAGTCGGCAAGCAATGTATGTAGACGGAATCAAGGACAGATTCATTGCATCTGTTGTCGCCCCTCCCATTTCCCCTCCTCCCACAAAAAAGACAACGAATCATA
AATCTTCGGAAGAACCAGCACCGACTCTCCATGCATAATCCCGTCTCCGATCCAGATTTTCAGAGCTTAGTTTCGATGCATCTCGGAGCCAAACGGTCAAGgtagcttcgaatttctcttttatccccacatttttctgagctggagaatgtaaaggtattcttaatttattaaatgtcggaatcttaaggcgtttatgt
tcatattcttccgtgtttcag
AATTGGGACGGTTTCTTGAATCTTTAATTGAGAATTAGGGTTCTATGGCCTGGAAACGCAAGGCAGAAGTTGATTGATTTCTAGTGGCCGACTGATGCAAAGACTGTTAAGGCAAACTTCCGTTTACTGCGTGTAGGTT




Intron 8 GTACATAGCA ... TCGTTTACAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A171.4381129
A253.57131317
A373.33101144
A455.79213122
A580.952215
A663.43323774
A763.245962141
A858.516764125
A961.4397108201
A1061.736279121



>TRINITY_DN133334_c0_g1_i8 from sample A1 / Example spliced isoform
GCGAGGACGAGGATGCATAAATTTCAGAAGCGCGACTGCCGATTCTCCTTGGATAATCCCAGCTCAGATCCAGATTTCCAGAGCTCTCAATCTCCATACAATTCGGATCCAAATGGTCAAAAGATTTGGGACGGTTTCCGTGAATCTTTAGATGAGAATTAATGTTCTATGGCCTGGCAACGCAGAGCAAACGTTGATTG
ATTTCCAGTGGCCAACTGATGAAAATGCCAAAGACTATCATGGCGAACTTCCGTTAACTGCGCGAAGAACATAAGGTCATTGATTTCTAATGGCCGACTAATCCAAAGATTGTTAAGGCGAACCGGCATTTACGGGGCATAGGGTTTTTAGGACCGTAAAGGTTTTGGACATTCTTATTCAGCGGTGAAATTGACTGCAA
AATAAAGGAAATGACAGTCGGAGAAGAGTCTTCGCCGTTTTCTCCAAAGAAGCATGAACCGCACTATATTCCACAGAACAACACGTCCCCTACTTCTGCTCAGGCAAAGCCGATCGGCTTCTTGAAAGCGAAAGGAAAAACCGATCCATTTCATGCTATGTACAAGGTTCCCGTCGGAGACACACCCTATGGCAAAGCCA
AACACCGTCAGCTTGTGGAAAAGGACCCGGCTGGCGCCATCGCATTGTTCTGGGAAGCTATTAATGCAGGAGACCGAGTTGACAGCGCATTGAAGGACATGGCCGTGGTGATGAAGCAGCAGAACCGACCACTGGAAGCCATTGAAGCCATTAAGTCCTTCAGGCACCTTTGCTCGCAAAAAGCGCAAGAGTCTCTTGAT
AATGTGCTCATTGATCTATTTAAGAAATGTGGAAGATTGGATGAGCAGATTCGCCTGTTGAAGCATAAGCTCCTTTTAATTCAGCAAGGATCTGCATTCAATGGCGAATTCACCAAAACTGGACGGTCACATGGAAGGAAGTTTAAGGTTTCCATAAAGCAAGAGACCACTCGGCTTCTGGAAAGCACAGGTATTGGAGC
CAGATGAGAACAAGGCCTG


>TRINITY_DN133334_c0_g1_i6 from sample A1 / Example unspliced isoform:
GCGAGGACGAGGATGCATAAATTTCAGAAGCGCGACTGCCGATTCTCCTTGGATAATCCCAGCTCAGATCCAGATTTCCAGAGCTCTCAATCTCCATACAATTCGGATCCAAATGGTCAAAAGAGCAAACGTTGATTGATTTCCAGTGGCCAACTGATGAAAATGCCAAAGACTATCATGGCGAACTTCCGTTAACTGCG
CGAAGGTTTTTGTAGCTATGGGAACGCTTTGAAAATTCTCCCTCAGCAGTGAAAGAAAACTTAAATGCCGGATTCTTAAGGCGTTTAAGTTATATTCTTCTGTGTTTCAAATTTCAGACGTTTTCCCTGAATCTTTAGCTCTGAATTTGTGTTCTCTGGCCTGGAAATGCAGAACATAAGGTCATTGATTTCTAATGGCC
GACTAATCCAAAGATTGTTAAGGCGAACCGGCATTTACGGGGCATAGGGTTTTTAGGACCGTAAAGGTTTTGGACATTCTTATTCAGCGGTGAAATTGACTGCAAAATAAAGGAAATGACAGTCGGAGAAGAGTCTTCGCCGTTTTCTCCAAAGAAGCATGAACCGCACTATATTCCACAGAACAACACGTCCCCTACTT
CTGCTCAGGCAAAGCCGATCGGCTTCTTGAAAGCGAAAGGAAAAACCGATCCATTTCATGCTATGTACAAGGTTCCCGTCGGAGACACACCCTATGGCAAAGCCAAACACCGTCAGCTTGTGGAAAAGGACCCGGCTGGCGCCATCGCATTGTTCTGGGAAGCTATTAATGCAGGAGACCGAGTTGACAGCGCATTGAAG
GACATGGCCGTGGTGATGAAGCAGCAGAACCGACCACTGGAAGCCATTGAAGCCATTAAGTCCTTCAGGCACCTTTGCTCGCAAAAAGCGCAAGAGTCTCTTGATAATGTGCTCATTGATCTATTTAAGAAATGTGGAAGATTGGATGAGCAGATTCGCCTGTTGAAGCATAAGCTCCTTTTAATTCAGCAAGGATCTGC
ATTCAATGGCGAATTCACCAAAACTGGACGGTCACATGGAAGGAAGTTTAAGGTTTCCATAAAGCAAGAGACCACTCGGCTTCTGgtacatagcatccacacccttcctgttctattagtatttctgtctaacagtggttgaatgagaatgtaatgggtgttggcagagtaatttgggattggcatatatgcaacaacat
gactactgttctgcagaaatcgtttacag
GAAAGCACAGGTATTGGAGCCAGGTGAGAACAAGGCCTGTAATCTAAGCGTTTGTCTGATGAGGCAAGGAAAGGTGGAGGAGGCCATGGGTTTTCTTCAGGGTGTGCTGAACAACAATAAGAATTCTACGAACTATAATCATAATAACAGTAGAGAAAAACCGAAGTCACT
GGATCGTGTCGAAGCGTTGTTGAAGGAAATTATGGATTCTAAAACAAACGGAAGCAATGGGGAGGAATGTCAATCAGCAACATCACGTGTTGAAGATTTGGAGTGGTTTTGGTGTTATGAAGGGGGAGTAGAAGAAGGGTTGCAAGAAGGAGGAGGACAAAAGGGATTGGGTGTGGCAGTTGAGCTCAATCGCAAACGAA
GTCGACTGAGAGTTTTCGAAGAGATGACATCTGCTCATAACAAGCGGTGCCATCTTCATGGAAGCAACATTCAGCCTGCTATGCAGCATTAAGAGCGGTAGAGTACCCTTTGCATTTGCGATGTATATAAATAAATGTATTTAACAGTGTATATCACGTGGGTACCATTAATGCTGCGTAGCGGGTTGCCCGTTCTCATG
GTGGTAAACTGGGTGACTGGGTCCACATGTAAGGCCCAATAATTGAGTGGAGTTGTATAGCTTTGCAAGATTATAATCGTAGTTGATTATACCTATGTTGCTGAGTAATGCAAAAACTCACTTGGGTGAGGTCTATGGTTAACTCGTAATAATAAAACTGTGTTCGTGTCTTTTCG