NA ----> NA
Intron 1 GCTTTTTAAG ... ATATTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 30.8 | 346 | 154 | 67 |
| A2 | 32.88 | 394 | 193 | 54 |
| A3 | 32.41 | 465 | 223 | 70 |
| A4 | 28.94 | 302 | 123 | 62 |
| A5 | 35.12 | 364 | 197 | 57 |
| A6 | 34.1 | 2441 | 1263 | 406 |
| A7 | 34.67 | 2310 | 1226 | 345 |
| A8 | 32.2 | 1257 | 597 | 225 |
| A9 | 33.15 | 2160 | 1071 | 335 |
| A10 | 34.05 | 2214 | 1143 | 339 |
>TRINITY_DN40332_c4_g1_i3 from sample A8 / Example spliced isoformAATGAATTGGCTCTATGTCCACATTCTCGTTGATCAAAGCAATTTATAGTAAAACGCTGGAATGACCTACAGCCATATTCAAAGAAACAAAACGTGTCAAAGAATCGCAAAGACTAAGCACACCATGCGCACAGTTGTTTAGGGAGATTTGTTTCGAGGGAAGTTGACACAACGTTCGGGAGGTTTTACACGATTTTGCA
AATTTATTTTATTTGTCTTTTCCCACGGGCAGGCGGCGACAGGGCAAATATGATCTGAAGGAGGCCGCCATCGGTATTTTTCCTAATTATTTGTTTGGTGTTAGGAAGGAAGGTGGGAGAGAGATGGTTTTGTGGGAGCTGACATTGGCCACGGCCTACGTGCTAGGTCTGAAGAGAACCTACAGGCTCGCCCTCAGAAT
TCAACGCCGACTCATCTCTTCCCGTCATGCCGCACTGAGACAATTCGTTCAAAGGCGCACTCGAAATATTTTTGATATAGCTCTCAGAGTGCATAGAAACATACAAAACAGAGACATTGAAATGGGAAGGAGCGTTGGAAGTAGGATTTTGCGATGGCTTGACCGCATTAAACCATCAGCCAACATTAGAGGATGTCCTT
CTTCCAAGCTTCCAGCTCATGAGACAAGTTCTACAAAAGCTGTTGGGGCTAGGCCTTGTACAGGAGTCAGTTCTGTTGATAACAAAAAAGCAAGTACAGACAGACAGGCTGGTAGAGATCTTTTTGTCATATCTAAGCCAGTGTGTATGACGGACACTGGCTGTTTTGCCTCATTGTCGAAGGATAGATACAATGGAAGA
CTCGGATTAAGTTCAAATGTTGGAATAAGGTCATTACCCCTGACAACACTTTCTATGTGGTGGCAGCCTGTACGACAAAACATCATAGCCATTGGTCCATGCAGGAATGTTTCATTCTCCGCTCCCGTAACACCAGAGTTGCACTTAAAAGACATTTTGAGAGGTGTCATTCGTGAAGACATTGCTGTTTGGATGCAGCA
ATATAAAAACAACGGGATGTGGTAAAAATATTTCACAGGGAATCAGTGTAGCTAAATATCAAGGCATTGAGTCTGTTAACACCAAATGGTCAATCAGTGGATCAATGTTACCTACCCATCTATTTGCCTTTATACCACCACACTCGAGTGCTCATCTGCGTGGTAACTATAGGTGATAGGCTTGTGTTGTGGGGTTAAGA
ACTTCAAAACACTCGGAAATAAAGATTTGGTTTGGCAATATAATAGTGCCATCCTTTGTATAATGACAAGTACAACCTCAAATATTAGGGTTATGATCTTTAAGTTCATATTGGAGAAAATTTGTTTTGGTTTGAAATACTGCAGCAAATTTTTTATTGCATTTCGAACAATTATTGTTGAGATACTTGGAGAGTTTTCG
TGAAGATGGATTATCGTTTGCTTCCCATCTCCATTTATTTCTTAAGTTAGGTTAAGTATATATACCTTATAGGTTTACATCACATTTCAGTGCATTATCTGTTGAAGAAGCGAGAACCATATTCTAACAAATGAGCTTCCTTCATCTGGGGATAGCATTTAATTTATATACAATTTAGAGCACTCATACATGGTATATGT
GTGGCATATATGATATGAGATCGCCTCCTCCCCTTCTGGTAGAATTAGTACAATGAAAAACAATTTGTG
>TRINITY_DN40332_c4_g1_i4 from sample A8 / Example unspliced isoform:AATGAATTGGCTCTATGTCCACATTCTCGTTGATCAAAGCAATTTATAGTAAAACGCTGGAATGACCTACAGCCATATTCAAAGAAACAAAACGTGTCAAAGAATCGCAAAGACTAAGCACACCATGCGCACAGTTGTTTAGGGAGATTTGTTTCGAGGGAAGTTGACACAACGTTCGGGAGGTTTTACACGATTTTGCA
AATTTATTTTATTTGTCTTTTCCCACGGGCAGGCGGCGACAGGGCAAATATGATCTGAAGGAGGCCGCCATCGGTATTTTTCCTAATTATTTGTTTGGTGTTAGGAAGGAAGGTGGGAGAGAGATGGTTTTGTGGGAGCTGACATTGGCCACGGCCTACGTGCTAGGTCTGAAGAGAACCTACAGGCTCGCCCTCAGAAT
TCAACGCCGACTCATCTCTTCCCGTCATGCCGCACTGAGACAATTCGTTCAAAGgctttttaaggactgtcatttgcgagcacatgcacttattatatctcgaacataggataattggcacttgaaggaagatacattggaaatgattcagaacagaaaaatcaatcaacaatctgtatttaagttttaaagtaaaggaa
atgcacctatatcgatcatctctgttcactcttgtcaattgagccaagacttctatcaactttcaacctacctgttgcagaatttataactttatttcctctatgtttctgagtatgccttggtacttgtttatgccaacaagtttagtatattttgtataacgatatgctatttgtttggcatttcttgttacttcagt
ttacatatggaaaaattgctgaaaggtttcatgtcttacactcagagactgcatggtgcaatccaagttatggtcctgattatagtatgatttgtgaatggctagtgttgagggtttccatagagaaggaacgttgtcaaatgatctgttgtgttttgagctatgttctgcttgaatttctctgaagtaattctcttatg
agcttgtttaataacttctgtttttaagaattagtctactatatttgcagGCGCACTCGAAATATTTTTGATATAGCTCTCAGAGTGCATAGAAACATACAAAACAGAGACATTGAAATGGGAAGGAGCGTTGGAAGTAGGATTTTGCGATGGCTTGACCGCATTAAACCATCAGCCAACATTAGAGGATGTCCTTCTTC
CAAGCTTCCAGCTCATGAGACAAGTTCTACAAAAGCTGTTGGGGCTAGGCCTTGTACAGGAGTCAGTTCTGTTGATAACAAAAAAGCAAGTACAGACAGACAGGCTGGTAGAGATCTTTTTGTCATATCTAAGCCAGTGTGTATGACGGACACTGGCTGTTTTGCCTCATTGTCGAAGGATAGATACAATGGAAGACTCG
GATTAAGTTCAAATGTTGGAATAAGGTCATTACCCCTGACAACACTTTCTATGTGGTGGCAGCCTGTACGACAAAACATCATAGCCATTGGTCCATGCAGGAATGTTTCATTCTCCGCTCCCGTAACACCAGAGTTGCACTTAAAAGACATTTTGAGAGGTGTCATTCGTGAAGACATTGCTGTTTGGATGCAGCAATAT
AAAAACAACGGGATGTGGTAAAAATATTTCACAGGGAATCAGTGTAGCTAAATATCAAGGCATTGAGTCTGTTAACACCAAATGGTCAATCAGTGGATCAATGTTACCTACCCATCTATTTGCCTTTATACCACCACACTCGAGTGCTCATCTGCGTGGTAACTATAGGTGATAGGCTTGTGTTGTGGGGTTAAGAACTT
CAAAACACTCGGAAATAAAGATTTGGTTTGGCAATATAATAGTGCCATCCTTTGTATAATGACAAGTACAACCTCAAATATTAGGGTTATGATCTTTAAGTTCATATTGGAGAAAATTTGTTTTGGTTTGAAATACTGCAGCAAATTTTTTATTGCATTTCGAACAATTATTGTTGAGATACTTGGAGAGTTTTCGTGAA
GATGGATTATCGTTTGCTTCCCATCTCCATTTATTTCTTAAGTTAGGTTAAGTATATATACCTTATAGGTTTACATCACATTTCAGTGCATTATCTGTTGAAGAAGCGAGAACCATATTCTAACAAATGAGCTTCCTTCATCTGGGGATAGCATTTAATTTATATACAATTTAGAGCACTCATACATGGTATATGTGTGG
CATATATGATATGAGATCGCCTCCTCCCCTTCTGGTAGAATTAGTACAATGAAAAACAATTTGTG