sp|E3VXF2|SGO1_ORYSJ ----> Shugoshin-1
Intron 1 GTATCCTTGA ... AAGTTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 20.9 | 53 | 19 | 9 |
| A2 | 20.99 | 32 | 11 | 6 |
| A3 | 27.27 | 24 | 14 | 4 |
| A4 | 30 | 14 | 11 | 1 |
| A5 | 23.81 | 8 | 4 | 1 |
| A6 | 34.21 | 25 | 16 | 10 |
| A7 | 21.91 | 101.6 | 40 | 17 |
| A8 | 19.02 | 83 | 17 | 22 |
| A9 | 19.65 | 137 | 45 | 22 |
| A10 | 15.97 | 100 | 25 | 13 |
>TRINITY_DN43452_c1_g1_i3 from sample A8 / Example spliced isoformTAAAGAAAAACAACATTGGATCTTGCACTATAAGGGCGAATATTTGACTTCGGAAATCCAACCCCGCTTGGGGCTCTATCACAACACCCGGGTGGAAGTTTAAAAAAAAGAACGTTATCCAGAAGTTTTAATAGCGGGAGTCTCCGCCTTTACGCATCCATTGATTCAAACAAACACACGCCGAAGAAGGCGAAGGGCAG
CAAAAGCGGGACGACATCTCAATTCGAATTTTGGCTTGGGATTTCTTGCTTTTCCTCGTCATAGTCCATTAGTTCGCCTGCAAGAACGTCCCTGGGTTCGAACTCGTGACCCCAATATAGAGATGGCAGCTGAAGAAAAGCTTGGAAAGTGCATTCCAAGCATGGCACCAATTGTAGCTAATGGAAGGAGGCAACTTTCA
GATATCTCAAACACAGGCACACTTCCTCCATTAATGAAAAGAAAGGAGAATAGCTGTTTAGAACAGTTGAACAAATGCGATGAAATTCATCTGCATGAGGAAATAGATTCACTAAAGAAGCAACTTGCTGCTACTGAAGCAACCATTGTCTCACAAAATAATGAAAAGGAAAACTTGTGGTTCAATTTTTGCCATGCGTC
TCAGCAAAATCGGGAGCTTGTCCAAAGCAATGCACAATTGATCAAGGAATTGTTGATTGCTAGAGAAAAGTTGAAGCTGCTCATGCATGACTACAGCCAAATGTCTGCTATGTACACAGTTAAGATAATGGAACTTGAGCAAAAAGTCACTGAATTGTCACAGGAAGTGGAAAGCATGCAAGAAACAAGAAATAAGGAAC
CCAGAGAAAATCAAGATATATGGCAGGGACTGTCAGAACACACATCATCTGGCGAAAGAGTACAAATATTTGGCCATGGTTCTGATACTACTTTACAACTCTGTTATATTGGTTGTCTTTCTTTCAGAGTAAGTGTTTACAAATGACAATGTTCTGACAGATGACAGTAGTAAGGAACCGGATAGCTGTGTAAAGAAGAA
TGAATCTGGAAATGAACGGAATACATATGGGAAGAACTTGAAGTAAGTTTGAATGACAACTTGATTGTTTTTACAATGATTTTTTCTATGTATTTTGGATAGTGAAACTGTTTGTGGCGTCTGAAGGATTGGTTTCCCTGGTTAGATATGATGGCCATACTTAGGAAATAGGCATATACTTGGGCATTTATGAAAATGTT
CTTTTATTATGTAATAAAGTCATAATAAATGACTTAGTTTCTGAAGTAACTACCCTTCCAAAAATACAACCAAATGTGCAAATGCAATAACAACTTGCTAGAAAATAAATTCTAAAATCGTTTAATTCATTTTCTATGTGCTAACAACAAATATGATGAAAGTTTTCAATGGAAATGACAATAGGAAGTGTCCCTGATCA
ATGCTGAATCATACAATGCGAAAATAAAAGCAAATTCTTCCTTAGAATTTGCACAAATACATTTAGTAGGAACTGCCATTCAGATAGAGGAAAGTAGAGTTGCCAATAGAAGATGGAGGAAGCCCAGAAAACCTCCCAAACTGTCC
>TRINITY_DN43452_c1_g1_i11 from sample A8 / Example unspliced isoform:AAACAATTGCAAACAATGTAAGACTCTTTTACCATATTCAGTTATTACAATAATTTTTTTTCTCCAAACAATATAGTGACAGGAAACATTCTGCAACCTTTCCAAAGAACACAGTGACATGAGACATTCTGCAACATTTGAGGTTCAAAACTTTTGCCTTGCTTTTCTTTTGAAAGATGAAACGTTCAGAACCTGTTTAC
AAGCATTGACATCTTCAATTTATATCCCTTGATCTTTAATGGTCTGAGTAATTTGGGGCATTGTTTTGAGCAGGGAGAGAACTGATGGTTTCCCTCCCTGGAAGGGCTTGGGGAACTTGTGAAGTGTGCATGTAACCTCTTTTTCTCTGGATAGAGAACAGTCTCCTTTCAATAGTCTTTTGACATCTTTGAAAATTTTG
AATTAGAAAAGGCTGAAGGCACTTGAGATCTTCGTAGCTCCAATCCAAGTATCATGGCTTTCCCTTCAACATTTTAAAATGATTTTGGTAATCCCATCCTTTTCATCCCATCCTTTTCAAAATTGATGATCTAGAATCTAGATGCAACAATAGTTCATTTTAAAATCGGTATGTGTGTCTCTAGGTAAATTATTGTAGAG
TGTTCCATGCATAACTTTTCACACTTGTCCCAGAGATGGCAGCTGAAGAAAAGCTTGGAAAGTGCATTCCAAGCATGGCACCAATTGTAGCTAATGGAAGGAGGCAACTTTCAGATATCTCAAACACAGGCACACTTCCTCCATTAATGAAAAGAAAGGAGAATAGCTGTTTAGAACAGTTGAACAAATGCGATGAAATT
CATCTGCATGAGGAAATAGATTCACTAAAGAAGCAACTTGCTGCTACTGAgtatccttgatgcttagagatagctactagacctgaggatttgtagttccttcaaatgagttaacaagttttcagAGCAACCATTGTCTCACAAAATAATGAAAAGGAAAACTTGTGGTTCAATTTTTGCCATGCGTCTCAGCAAAATCG
GGAGCTTGTCCAAAGCAATGCACAATTGATCAAGGAATTGTTGATTGCTAGAGAAAAG
Intron 2 GTAATCCCAT ... CTTGTCCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 100 | 0 | 2 | 9 |
| A2 | 100 | 0 | 0 | 17 |
| A3 | 100 | 0 | 1 | 12 |
| A4 | 87.5 | 1 | 1 | 7 |
| A5 | 80 | 1 | 1 | 4 |
| A6 | 100 | 0 | 0 | 13 |
| A7 | 93.75 | 1 | 0 | 15 |
| A8 | 91.67 | 3 | 4 | 33 |
| A9 | 97.92 | 1 | 2 | 47 |
| A10 | 100 | 0 | 0 | 28 |
>TRINITY_DN43452_c1_g1_i10 from sample A8 / Example spliced isoformAAACAATTGCAAACAATGTAAGACTCTTTTACCATATTCAGTTATTACAATAATTTTTTTTCTCCAAACAATATAGTGACAGGAAACATTCTGCAACCTTTCCAAAGAACACAGTGACATGAGACATTCTGCAACATTTGAGGTTCAAAACTTTTGCCTTGCTTTTCTTTTGAAAGATGAAACGTTCAGAACCTGTTTAC
AAGCATTGACATCTTCAATTTATATCCCTTGATCTTTAATGGTCTGAGTAATTTGGGGCATTGTTTTGAGCAGGGAGAGAACTGATGGTTTCCCTCCCTGGAAGGGCTTGGGGAACTTGTGAAGTGTGCATGTAACCTCTTTTTCTCTGGATAGAGAACAGTCTCCTTTCAATAGTCTTTTGACATCTTTGAAAATTTTG
AATTAGAAAAGGCTGAAGGCACTTGAGATCTTCGTAGCTCCAATCCAAGTATCATGGCTTTCCCTTCAACATTTTAAAATGATTTTGAGATGGCAGCTGAAGAAAAGCCTGGAAAGTGCATTCCAAGCATGG
>TRINITY_DN43452_c1_g1_i11 from sample A8 / Example unspliced isoform:AAACAATTGCAAACAATGTAAGACTCTTTTACCATATTCAGTTATTACAATAATTTTTTTTCTCCAAACAATATAGTGACAGGAAACATTCTGCAACCTTTCCAAAGAACACAGTGACATGAGACATTCTGCAACATTTGAGGTTCAAAACTTTTGCCTTGCTTTTCTTTTGAAAGATGAAACGTTCAGAACCTGTTTAC
AAGCATTGACATCTTCAATTTATATCCCTTGATCTTTAATGGTCTGAGTAATTTGGGGCATTGTTTTGAGCAGGGAGAGAACTGATGGTTTCCCTCCCTGGAAGGGCTTGGGGAACTTGTGAAGTGTGCATGTAACCTCTTTTTCTCTGGATAGAGAACAGTCTCCTTTCAATAGTCTTTTGACATCTTTGAAAATTTTG
AATTAGAAAAGGCTGAAGGCACTTGAGATCTTCGTAGCTCCAATCCAAGTATCATGGCTTTCCCTTCAACATTTTAAAATGATTTTGgtaatcccatccttttcatcccatccttttcaaaattgatgatctagaatctagatgcaacaatagttcattttaaaatcggtatgtgtgtctctaggtaaattattgtagag
tgttccatgcataacttttcacacttgtcccagAGATGGCAGCTGAAGAAAAGCTTGGAAAGTGCATTCCAAGCATGGCACCAATTGTAGCTAATGGAAGGAGGCAACTTTCAGATATCTCAAACACAGGCACACTTCCTCCATTAATGAAAAGAAAGGAGAATAGCTGTTTAGAACAGTTGAACAAATGCGATGAAATT
CATCTGCATGAGGAAATAGATTCACTAAAGAAGCAACTTGCTGCTACTGAGTATCCTTGATGCTTAGAGATAGCTACTAGACCTGAGGATTTGTAGTTCCTTCAAATGAGTTAACAAGTTTTCAGAGCAACCATTGTCTCACAAAATAATGAAAAGGAAAACTTGTGGTTCAATTTTTGCCATGCGTCTCAGCAAAATCG
GGAGCTTGTCCAAAGCAATGCACAATTGATCAAGGAATTGTTGATTGCTAGAGAAAAG
Intron 3 GTACATCGAG ... AGGAACCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 76.47 | 4 | 13 | 13 |
| A2 | 100 | 0 | 4 | 1 |
| A3 | 100 | 0 | 18 | 7 |
| A4 | 100 | 0 | 6 | 3 |
| A5 | 100 | 0 | 3 | 1 |
| A6 | 100 | 0 | 13 | 12 |
| A7 | 95.74 | 2 | 65 | 25 |
| A8 | 90.65 | 5 | 57 | 40 |
| A9 | 92.52 | 4 | 59 | 40 |
| A10 | 81.4 | 8 | 33 | 37 |
>TRINITY_DN46767_c0_g1_i9 from sample A10 / Example spliced isoformAGAAAAACAACATTGGATCTTGCACTATAAGGGCGAATATTTGACTTCGGAAATCCAACCCCGCTTGGGGCTCTATCACAACACCCGGGTGGAAGTTTATAAAAAAGAACGTTATCCAGAAGTTTTAATAGCGGGAGTCTCCGCCTTTACGCATCCATTGATTCAAACAAACACACGCCGAAGAAGCCGAAGGGCAACAA
AAGCGGGACGACATCTCAATTCGAATTTTGGCTTGGGATTTCTCGCTTTTCCTCGTCATAGTCCATTAGTTCGCCTGCAAGAACGTCCCTGGGTTCGAACTCGTGACCGCAATATAGGAAATAGATTCACTAAAGAAGCAACTTGCTGCTACTGATTTTCAGAGCAACCATTGTCTCACAAAATAATGAAAAGGAAAACT
TGTGGTTCAATTTTTGCCATGCGTCTCAGCAAAATCGGGAGCTTGTCCAAAGCAATGCACAATTGATCAAGGAATTGTTGATTGCTAGAGAAAAGCAAAAAGTCACTGAATTGCCACAGGAAGTGGAAAGCATGGAAGAAACAAGAAATAAGAGAAAATCAAGATATATGGCAGGGACTGTCAGAACACACATCATCTGG
CGAAAGA
>TRINITY_DN46767_c0_g1_i5 from sample A10 / Example unspliced isoform:AGAAAAACAACATTGGATCTTGCACTATAAGGGCGAATATTTGACTTCGGAAATCCAACCCCGCTTGGGGCTCTATCACAACACCCGGGTGGAAGTTTATAAAAAAGAACGTTATCCAGAAGTTTTAATAGCGGGAGTCTCCGCCTTTACGCATCCATTGATTCAAACAAACACACGCCGAAGAAGCCGAAGGGCAACAA
AAGCGGGACGACATCTCAATTCGAATTTTGGCTTGGGATTTCTCGCTTTTCCTCGTCATAGTCCATTAGTTCGCCTGCAAGAACGTCCCTGGGTTCGAACTCGTGACCGCAATATAGAGATGGCAGCTGAAGAAAAGCTTGGAAAGTGCATTCCAAGCATGGCACCAATTGTAGCTAATGGAAGGAGGCAGCTTTCAGAT
ATATCAAACACAGGCACACTTCCTCCATTAATGAAAAGAAAGGAGAATAGCTGTTTAGAACAGTTGAACAAATGCGATGAAATTCATCTGCATGAGGAAATAGATTCACTAAAGAAGCAACTTGCTGCTACTGAAGCAACCATTGTCTCACAAAATAATGAAAAGGAAAACTTGTGGTTCAATTTTTGCCATGCGTCTCA
GCAAAATCGGGAGCTTGTCCAAAGCAATGCACAATTGATCAAGGAATTGTTGATTGCTAGAGAAAAGTTGAAGCTGCTCATGCATGACTACAGCCAAATGTCTGCTATGTACACAGTTAAGATAATGGAACTTGAGCAAAAAGTCACTGAATTGTCACAGGAAGTGGAAAGCATGCAAGAAACAAGAAATAAGgtacatc
gagtgctgattctcggaattcagatgatgcattaactggtttatccatatcctgctaaaagctaacaagaaaatactttcataggaacccagAGAAAATCAAGATATATGGCAGGGACTGTCAGAACACACATCATCTGGCGAAAGAGTACAAATATTTGGCCATGGTTCTGATACTACTTTACAACTCTGTTATATTGG
TTGTCTTTCTTTCAGAGTAAGTGTTTACAAATGACAATGTTCTGACAGATGACAGTAGTAAGGAACCGGATAGCTGTGTAAAGAAGAATGAATCTGGAAATGAACGGAATACATATGGGAAGAACTTGAAGATATGCCTGAGAAGGCGTTCGGATGATTTAAGCTACAAAGAACCTTCCCTGCGGAGAAAACTTAGGCAG
GAAGAAGATCAAACCACGTCATCAAGGAAGTATCGGCGTGCTCATTCTTACAGTGGACAAGGGGCTGTGGAGAAAAATTGTTATAATGTGATGTTGAATGTCTCTGGCACCCTACAACATGAGACTAAGCTTGGGTGTGTCCTGGATTCAACAGAATCCTCCAGAAATCTTCAGAGCAGTTCAGACTGCACCAAGAAAAT
ACGTCAGAGTTCTGATGTCAAGCTACAGCAGCAGCAACAGACAGATCAGAGTTCTTGTAAGGAATCTTTAACTGCTGTCATAGATGAGATGCAACCATCAAGAAGGTCCTCAACTGGAAGGCCAGCACGAAAAGCAAAAGAGATTGTGACATCTTACAAGGAAGTTCCCCTTAAAACTAAACTACGAAGATCAGAATGAT
TGCTTGCCCAAACAGCTAGTTAGATGCCAGAATTGTCTTCTTTCCCTGCACTTGACATCATCATGGTGTTAGAGATATATTTATATTTCTAATGACTAATATTATTTCTGGGGCCATTCTGTCATCATAAACGTTGCAAGTGAAGTCAACATCCATTTTTTGTTTCTAGGTTTTTCTTATTGCACTGTTTATATGTTTTC
TATCTCTGTTGGAGATACACTCTTCTATGTACTAAGTAATCCTTTTGAAGCAAATATTTAAGTAACATTTTGGAGGTGTAGTTATGTTGTTTCAAAAAAATTGTTAATATCACTGGTTGTTGTATTACCAGGTCGATGTTTATTG
Intron 4 GTAAGGTTCA ... CTCTTAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 22.5 | 31 | 1.5 | 9 |
| A2 | 10.26 | 35 | 2.3 | 4 |
| A3 | 24.62 | 49 | 5.5 | 16 |
| A4 | 29.41 | 12 | 1.3 | 5 |
| A5 | 21.43 | 11 | 0.5 | 3 |
| A6 | 20.37 | 43 | 0.5 | 11 |
| A7 | 24.56 | 172 | 4.3 | 56 |
| A8 | 26.89 | 155 | 6.8 | 57 |
| A9 | 23.85 | 182 | 5 | 57 |
| A10 | 20 | 116 | 6.5 | 29 |
>TRINITY_DN43452_c1_g1_i8 from sample A8 / Example spliced isoformTAAAGAAAAACAACATTGGATCTTGCACTATAAGGGCGAATATTTGACTTCGGAAATCCAACCCCGCTTGGGGCTCTATCACAACACCCGGGTGGAAGTTTAAAAAAAAGAACGTTATCCAGAAGTTTTAATAGCGGGAGTCTCCGCCTTTACGCATCCATTGATTCAAACAAACACACGCCGAAGAAGGCGAAGGGCAG
CAAAAGCGGGACGACATCTCAATTCGAATTTTGGCTTGGGATTTCTTGCTTTTCCTCGTCATAGTCCATTAGTTCGCCTGCAAGAACGTCCCTGGGTTCGAACTCGTGACCCCAATATAGAGATGGCAGCTGAAGAAAAGCTTGGAAAGTGCATTCCAAGCATGGCACCAATTGTAGCTAATGGAAGGAGGCAACTTTCA
GATATCTCAAACACAGGCACACTTCCTCCATTAATGAAAAGAAAGGAGAATAGCTGTTTAGAACAGTTGAACAAATGCGATGAAATTCATCTGCATGAGGAAATAGATTCACTAAAGAAGCAACTTGCTGCTACTGAAGCAACCATTGTCTCACAAAATAATGAAAAGGAAAACTTGTGGTTCAATTTTTGCCATGCGTC
TCAGCAAAATCGGGAGCTTGTCCAAAGCAATGCACAATTGATCAAGGAATTGTTGATTGCTAGAGAAAAGTTGAAGCTGCTCATGCATGACTACAGCCAAATGTCTGCTATGTACACAGTTAAGATAATGGAACTTGAGCAAAAAGTCACTGAATTGTCACAGGAAGTGGAAAGCATGCAAGAAACAAGAAATAAGGAAC
CCAGAGAAAATCAAGATATATGGCAGGGACTGTCAGAACACACATCATCTGGCGAAAGAATGACAGTAGTAAGGAACCGGATAGCTGTGTAAAGAAGAATGAATCTGGAAATGAACGGAATACATATGGGAAGAACTTGAAGATATGCCTGAGAAGGCGTTCGGATGATTTAAGCTACAAAGAACCTTCCCTGCGGAGAA
AACTTAGGCAGGAAGAAGATCAAACCACGTCATCAAGGAAGTATCGGCGTGCTCATTCTTACAGTGGACAAGGGGCTGTGGAGAAAAATTGTTATAATGTGATGTTGAATGTCTCTGGCACCCTACAACATGAGACTAAGCTTGGGTGTGTCCTAGATTCAACAGAATCCTCCAGAAATCTTCAGAGCAGTTCAGACTGC
ACCAAGAAAATACGTCAGAGTTCTGATGTCAAGCTACAGCAGCAGCAACAGACAGATCAGAGTTCTTGTAAGGAATCTTTAACTGCTGTCATAGATGAGATGCAACCATCAAGAAGGTCCTCAACTGGAAGGCCAGCACGAAAAGCAAAAGAGATTGTGACATCTTACAAGGAAGTTCCCCTTAAAACTAAACTACGAAG
ATCAGAATGATTGCTTGCCCAAACAGCTAGTTAGATGCCAGAATTGTCTTCTTTCCCTGCACTTGACATCATCATGGTGTTAGAGATATATTTATATTTCTAATGACTAATATTATTTCTGGGGCCATTCTGTCATCATAAACGTTGCAAGTGAAGTCAACATCCATTTTTTGTTTCTAGGTTTTTCTTATTGCATTGTT
TATATGTTTTCTATCTCTGTTGGAGATACACTCTTCTATGTACTAAGTAATCCTTTTGAAGCAAATATTTAAGTAACATTTTGGAGGTGTAGTTATGTTGTTTCAAAAAAATTGTTAATATCACTGGTTGTTGTATTACCAGGTCGATGTTTATTGAATATCTG
>TRINITY_DN43452_c1_g1_i2 from sample A8 / Example unspliced isoform:TAAAGAAAAACAACATTGGATCTTGCACTATAAGGGCGAATATTTGACTTCGGAAATCCAACCCCGCTTGGGGCTCTATCACAACACCCGGGTGGAAGTTTAAAAAAAAGAACGTTATCCAGAAGTTTTAATAGCGGGAGTCTCCGCCTTTACGCATCCATTGATTCAAACAAACACACGCCGAAGAAGCCGAAGGGCAA
CAAAAGCGGGACGACATCTCAATTCGAATTTTGGCTTGGGATTTGTCGCTTTTCCTCGTCGTAGTCCATTAGTTCGCCTGCAAGAACGTCCCTGGGTTCGAACTCGTGACCCCAATATAGAGATGGCAGCTGAAGAAAAGCTTGGAAAGTGCATTCCAAGCATGGCACCAATTGTAGCTAATGGAAGGAGGCAACTTTCA
GATATCTCAAACACAGGCACACTTCCTCCATTAATGAAAAGAAAGGAGAATAGCTGTTTAGAACAGTTGAACAAATGCGATGAAATTCATCTGCATGAGGAAATAGATTCACTAAAGAAGCAACTTGCTGCTACTGAAGCAACCATTGTCTCACAAAATAATGAAAAGGAAAACTTGTGGTTCAATTTTTGCCATGCGTC
TCAGCAAAATCGGGAGCTTGTCCAAAGCAATGCACAATTGATCAAGGAATTGTTGATTGCTAGAGAAAAGgtaaggttcatggcgaagacttttatctgaatgacattttccatgtattccttttttggccaatgcacatattgtaattttcaagcttccagtttggagcctcagagggcaaacaatcttcttgagtgtt
ttatggtagcggtgtttcctcttaacagTTGAAGCTGCTCATGCATGACTACAGCCAAATGTCTGCTATGTACACAGTTAAGATAATGGAACTTGAGCAAAAAGTCACTGAATTGTCACAGGAAGTGGAAAGCATGCAAGAAACAAGAAATAAGGAACCCAGAGAAAATCAAGATATATGGCAGGGACTGTCAGAACACA
CATCATCTGGCGAAAGAATGACAGTAGTAAGGAACCGGATAGCTGTGTAAAGAAGAATGAATCTGGAAATGAACGGAATACATATGGGAAGAACTTGAAGATATGCCTGAGAAGGCGTTCGGATGATTTAAGCTACAAAGAACCTTCCCTGCGGAGAAAACTTAGGCAGGAAGAAGATCAAACCACGTCATCAAGGAAGT
ATCGGCGTGCTCATTCTTACAGTGGACAAGGGGCTGTGGAGAAAAATTGTTATAATGTGATGTTGAATGTCTCTGGCACCCTACAACATGAGACTAAGCTTGGGTGTGTCCTAGATTCAACAGAATCCTCCAGAAATCTTCAGAGCAGTTCAGACTGCACCAAGAAAATACGTCAGAGTTCTGATGTCAAGCTACAGCAG
CAGCAACAGACAGATCAGAGTTCTTGTAAGGAATCTTTAACTGCTGTCATAGATGAGATGCAACCATCAAGAAGGTCCTCAACTGGAAGGCCAGCACGAAAAGCAAAAGAGATTGTGACATCTTACAAGGAAGTTCCCCTTAAAACTAAACTACGAAGATCAGAATGATTGCTTGCCCAAACAGCTAGTTAGATGCCAGA
ATTGTCTTCTTTCCCTGCACTTGACATCATCATGGTGTTAGAGATATATTTATATTTCTAATGACTAATATTATTTCTGGGGCCATTCTGTCATCATAAACGTTGCAAGTGAAGTCAACATCCATTTTTTGTTTCTAGGTTTTTCTTATTGCATTGTTTATATGTTTTCTATCTCTGTTGGAGATACACTCTTCTATGTA
CTAAGTAATCCTTTTGAAGCAAATATTTAAGTAACATTTTGGAGGTGTAGTTATGTTGTTTCAAAAAAATTGTTAATATCACTGGTTGTTGTATTACCAGGTCGATGTTTATTGAATATCTG
Intron 5 GTTGAGTATA ... TCCTTGATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 62.96 | 5 | 11 | 6 |
| A2 | 55.56 | 2 | 3 | 2 |
| A3 | 53.85 | 3 | 6 | 1 |
| A4 | 85.71 | 1 | 10 | 2 |
| A5 | 60 | 1 | 1 | 2 |
| A6 | 45.45 | 9 | 8 | 7 |
| A7 | 33.33 | 12 | 4 | 8 |
| A8 | 45.83 | 13 | 8 | 14 |
| A9 | 49.15 | 15 | 12 | 17 |
| A10 | 44 | 7 | 4 | 7 |
>TRINITY_DN43452_c1_g1_i11 from sample A8 / Example spliced isoformAAACAATTGCAAACAATGTAAGACTCTTTTACCATATTCAGTTATTACAATAATTTTTTTTCTCCAAACAATATAGTGACAGGAAACATTCTGCAACCTTTCCAAAGAACACAGTGACATGAGACATTCTGCAACATTTGAGGTTCAAAACTTTTGCCTTGCTTTTCTTTTGAAAGATGAAACGTTCAGAACCTGTTTAC
AAGCATTGACATCTTCAATTTATATCCCTTGATCTTTAATGGTCTGAGTAATTTGGGGCATTGTTTTGAGCAGGGAGAGAACTGATGGTTTCCCTCCCTGGAAGGGCTTGGGGAACTTGTGAAGTGTGCATGTAACCTCTTTTTCTCTGGATAGAGAACAGTCTCCTTTCAATAGTCTTTTGACATCTTTGAAAATTTTG
AATTAGAAAAGGCTGAAGGCACTTGAGATCTTCGTAGCTCCAATCCAAGTATCATGGCTTTCCCTTCAACATTTTAAAATGATTTTGGTAATCCCATCCTTTTCATCCCATCCTTTTCAAAATTGATGATCTAGAATCTAGATGCAACAATAGTTCATTTTAAAATCGGTATGTGTGTCTCTAGGTAAATTATTGTAGAG
TGTTCCATGCATAACTTTTCACACTTGTCCCAGAGATGGCAGCTGAAGAAAAGCTTGGAAAGTGCATTCCAAGCATGGCACCAATTGTAGCTAATGGAAGGAGGCAACTTTCAGATATCTCAAACACAGGCACACTTCCTCCATTAATGAAAAGAAAGGAGAATAGCTGTTTAGAACAGTTGAACAAATGCGATGAAATT
CATCTGCATGAGGAAATAGATTCACTAAAGAAGCAACTTGCTGCTACTGAGTATCCTTGATGCTTAGAGATAGCTACTAGACCTGAGGATTTGTAGTTCCTTCAAATGAGTTAACAAGTTTTCAGAGCAACCATTGTCTCACAAAATAATGAAAAGGAAAACTTGTGGTTCAATTTTTGCCATGCGTCTCAGCAAAATCG
GGAGCTTGTCCAAAGCAATGCACAATTGATCAAGGAATTGTTGATTGCTAGAGAAAAG
>TRINITY_DN43452_c1_g1_i9 from sample A8 / Example unspliced isoform:TAAAGAAAAACAACATTGGATCTTGCACTATAAGGGCGAATATTTGACTTCGGAAATCCAACCCCGCTTGGGGCTCTATCACAACACCCGGGTGGAAGTTTAAAAAAAAGAACGTTATCCAGAAGTTTTAATAGCGGGAGTCTCCGCCTTTACGCATCCATTGATTCAAACAAACACACGCCGAAGAAGCCGAAGGGCAA
CAAAAGCGGGACGACATCTCAATTCGAATTTTGGCTTGGGATTTCTTGCTTTTCCTCGTCATAGTCCATTAGTTCGCCTGCAAGAACGTCCCTGGGTTCGAACTCGTGACCCCAATATAGAGATGGCAGCTGAAGAAAAGCTTGGAAAGTGCATTCCAAGCATGGCACCAATTGTAGCTAATGGAAGGAGGCAACTTTCA
GATATCTCAAACACAGGCACACTTCCTCCATTAATGAAAAGAAAGGAGAATAGCTGTTTAGAACAGTTGAACAAATGCGATGAAATTCATCTGCATGAGGAAATAGATTCACTAAAGAAGCAACTTGCTGCTACTGAGTATCCTTGATGCTTAGAGATAGCTACTAGACCTGAGGATTTGTAGTTCCTTCAAATGAGTTA
gttgagtatataattccagataatgtcaagtttattttctgtttaattgtattccactgttaagagataaattttatatttgatatttgaaattccttgatagACAAGTTTTCAGAGCAACCATTGTCTCACAAAATAATGAAAAGGAAAACTTGTGGTTCAATTTTTGCCATGCGTCTCAGCAAAATCGGGAGCTTGTC
CAAAGCAATGCACAATTGATCAAGGAATTGTTGATTGCTAGAGAAAAGTTGAAGCTGCTCATGCATGACTACAGCCAAATGTCTGCTATGTACACAGTTAAGATAATGGAACTTGAGCAAAAAGTCACTGAATTGTCACAGGAAGTGGAAAGCATGCAAGAAACAAGAAATAAGGTACATCGAGTGCTGATTCTCGGAAT
TCAGATGATGCATTAACTGGTTTATCCATATCCTGCTAAAAGCTAACAAGAAAATACTTTCATAGGAACCCAGAGAAAATCAAGATATATGGCAGGGACTGTCAGAACACACATCATCTGGCGAAAGAGTACAAATATTTGGCCATGGTTCTGATACTACTTTACAACTCTGTTATATTGGTTGTCTTTCTTTCAGAGTA
AGTGTTTACAAATGACAATGTTCTGACAGATGACAGTAGTAAGGAACCGGATAGCTGTGTAAAGAAGAATGAATCTGGAAATGAACGGAATACATATGGGAAGAACTTGAAGTAAGTTTGAATGACAACTTGATTGTTTTTACAATGATTTTTTCTATGTATTTTGGATAGTGAAACTGTTTGTGGCGTCTGAAGGATTG
GTTTCCCTGGTTAGATATGATGGCCATACTTAGGAAATAGGCATATACTTGGGCATTTATGAAAATGTTCTTTTATTATGTAATAAAGTCATAATAAATGACTTAGTTTCTGAAGTAACTACCCTTCCAAAAATACAACCAAATGTGCAAATGCAATAACAACTTGCTAGAAAATAAATTCTAAAATCGTTTAATTCATT
TTCTATGTGCTAACAACAAATATGATGAAAGTTTTCAATGGAAATGACAATAGGAAGTGTCCCTGATCAATGCTGAATCATACAATGCGAAAATAAAAGCAAATTCTTCCTTAGAATTTGCACAAATACATTTAGTAGGAACTGCCATTCAGATAGAGGAAAGTAGAGTTGCCAATAGAAGATGGAGGAAGCCCAGAAAA
CCTCCCAAACTGTCC
Intron 6 GTACATCGAG ... ACTTTCATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 21.53 | 37.1 | 9.5 | 10.4 |
| A2 | 6.53 | 12.8 | 2.5 | 0.8 |
| A3 | 15.97 | 32.8 | 11.5 | 5.8 |
| A4 | 20.36 | 11.1 | 5.2 | 2.8 |
| A5 | 9.08 | 8.9 | 1.8 | 0.8 |
| A6 | 12.02 | 41.8 | 8 | 5.6 |
| A7 | 14.78 | 151.1 | 43.6 | 25.6 |
| A8 | 15.12 | 152 | 38.5 | 27.5 |
| A9 | 13.5 | 177.8 | 38.9 | 27.5 |
| A10 | 24.23 | 97.8 | 23.8 | 31.3 |
>TRINITY_DN97797_c0_g1_i4 from sample A4 / Example spliced isoformGCTCTATCACAACACCCGGGTGGAAGTTTAAAAAAAAGAACGTTATCCAGAAGTTTTAATAGCGGGAGTCTCCGCCTTTACGCATCCATTGATTCAAACAAACACACGCCGAAGAAGCCGAAGGGCAACAAAAGCGGGACGACATCTCAATTCGAATTTTGGCTTGGGATTTCTCGCTTTTCCTCGTCATAGTCCATTAG
TTCGCCTGCAAGAACGTCCCTGGGTTCGAACTCGTGACCGCAATATAGAGATGGCAGCTGAAGAAAAGCTTGGAAAGTGCATTCCAAGCATGGCACCAATTGTAGCTAATGGAAGGAGGCAACTTTCAGATATCTCAAACACAGGCACACTTCCTCCATTAATGAAAAGAAAGGAGAATAGCTGTTTAGAACAGTTGAAC
AAATGCGATGAAATTCATCTGCATGAGGAAATAGATTCACTAAAGAAGCAACTTGCTGCTACTGAAGCAACCATTGTCTCACAAAATAATGAAAAGGAAAACTTGTGGTTCAATTTTTGCCATGCGTCTCAGCAAAATCGGGAGCTTGTCCAAAGCAATGCACAATTGATCAAGGAATTGTTGATTGCTAGAGAAAAGTT
GAAGCTGCTCATGCATGACTACAGCCAAATGTCTGCTATGTACACAGTTAAGATAATGGAACTTGAGCAAAAAGTCACTGAATTGTCACAGGAAGTGGAAAGCATGCAAGAAACAAGAAATAAGGAACCCAGAGAAAATCAAGATATATGGCAGGGACTGTCAGAACACACATCATCTGGCGAAAGAGTACAAATATTTG
GCCATGGTTCTGATACTACTTTACAACTCTGTTATATTGGTTGTCTTTCTTTCAGAGTAAGTGTTTACAAATGACAATGTTCTGACAGATGACAGTAGTAAGGAACCGGATAGCTGTGTAAAGAAGAATGAATCTGGAAATGAACGGAATACATATGGGAAGAACTTGAAGATATGCCTGAGAAGGCGTTCGGATGATTT
AAGCTACAAAGAACCTTCCCTGCGGAGAAAACTTAGGCAGGAAGAAGATCAAACCACGTCATCAAGGAAGTATCGGCGTGCTCATTCTTACAGTGGACAAGGGGCTGTGGAGAAAAATTGTTATAATGTGATGTTGAATGTCTCTGGCACCCTACAACATGAGACTAAGCTTGGGTGTGTCCTGGATTCAACAGAATCCT
CCAGAAATCTTCAGAGCAGTTCAGACTGCACCAAGAAAATACGTCAGAGTTCTGATGTCAAGCTACAGCAGCAGCAACAGACAGATCAGAGTTCTTGTAAGGAATCTTTAACTGCTGTCATAGATGAGATGCAACCATCAAGAAGGTCCTCAACTGGAAGGCCAGCACGAAAAGCAAAAGAGATTGTGACATCTTACAAG
GAAGTTCCCCTTAAAACTAAACTACGAAGATCACAATGATTGCTTGCCCAAACAGCTAGTTAGATGCCAGAATTGTCTTCTTTCCCTGCACTTGACATCATCATGGTGTTAGAGATATATTTATATTTCTAATGACTAATATTATTTCTGGGGCCATTCTGTCATCATAAACGTTGCAAGTGAAGTCAAC
>TRINITY_DN97797_c0_g1_i5 from sample A4 / Example unspliced isoform:GCTCTATCACAACACCCGGGTGGAAGTTTAAAAAAAAGAACGTTATCCAGAAGTTTTAATAGCGGGAGTCTCCGCCTTTACGCATCCATTGATTCAAACAAACACACGCCGAAGAAGCCGAAGGGCAACAAAAGCGGGACGACATCTCAATTCGAATTTTGGCTTGGGATTTCTCGCTTTTCCTCGTCATAGTCCATTAG
TTCGCCTGCAAGAACGTCCCTGGGTTCGAACTCGTGACCGCAATATAGAGATGGCAGCTGAAGAAAAGCTTGGAAAGTGCATTCCAAGCATGGCACCAATTGTAGCTAATGGAAGGAGGCAACTTTCAGATATCTCAAACACAGGCACACTTCCTCCATTAATGAAAAGAAAGGAGAATAGCTGTTTAGAACAGTTGAAC
AAATGCGATGAAATTCATCTGCATGAGGAAATAGATTCACTAAAGAAGCAACTTGCTGCTACTGAAGCAACCATTGTCTCACAAAATAATGAAAAGGAAAACTTGTGGTTCAATTTTTGCCATGCGTCTCAGCAAAATCGGGAGCTTGTCCAAAGCAATGCACAATTGATCAAGGAATTGTTGATTGCTAGAGAAAAGTT
GAAGCTGCTCATGCATGACTACAGCCAAATGTCTGCTATGTACACAGTTAAGATAATGGAACTTGAGGTAAGTCTGATAAAGATAATGGAAGTGAGGTGATTGGGACCCAGGTTCAAATCCCTTGAGTGGCTGTGGCTGTAAATATTTCCTTGTAGATATATGAAGTATTTCTCAATTAAAAAAAAGATTTTTGAATAGA
TTTTTTTATAGCATTGTTAATGATGGAGAAGATTTCTTGAAGGCTTATATTTCTGTGCAGCAAAAAGTCACTGAATTGTCACAGGAAGTGGAAAGCATGCAAGAAACAAGAAATAAGgtacatcgagtgctgattctcggaattcagatgatgcattaactggtttatccatatcctgctaaaagctaacaagaaaatac
tttcatagGAACCCAGAGAAAATCAAGATATATGGCAGGGACTGTCAGAACACACATCATCTGGCGAAAGA
Intron 7 GTTCTGATAC ... GTTCTGACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 29.75 | 28.4 | 17.1 | 7.2 |
| A2 | 29.1 | 15 | 3.8 | 8.6 |
| A3 | 55.17 | 16.4 | 19.8 | 20.3 |
| A4 | 45.33 | 9.1 | 4 | 10.7 |
| A5 | 21.92 | 8.9 | 3.6 | 1.5 |
| A6 | 55.84 | 35.3 | 28.9 | 60.4 |
| A7 | 46.21 | 121.1 | 94.3 | 114.1 |
| A8 | 58.75 | 103.3 | 130.2 | 164.2 |
| A9 | 55.41 | 110.2 | 122.9 | 151.6 |
| A10 | 49.84 | 90.7 | 81.5 | 98.8 |
>TRINITY_DN115445_c2_g1_i6 from sample A1 / Example spliced isoformGCTCTATCACAACACCCGGGTGGAAGTTTAAAAAAAAGAACGTTATCCAGAAGTTTTAATAGCGGGAGTCTCCGCCTTTACGCTTCCATTGATTCAAACAAACACACGCCGAAGAAGCCGAAGGGCAACAAAAGCGGGACGACATCTCAATTCGAATTTTGGCTTGGGATTTCTTGCTTTTCCTCGTCATAGTCCATTAG
TTCGCCTGCAAGAACGTCCCTGGGTTCGAACTCGTGACCGCAATATAGAGATGGCAGCTGAAGAAAAGCTTGGAAAGTGCATTCCAAGCATGGCACCAATTGTAGCTAATGGAAGGAGGCAACTTTCAGATATCTCAAACACAGGCACACTTCCTCCATTAATGAAAAGAAAGGAGAATAGCTGTTTAGAACAGTTGAAC
AAATGCGATGAAATTCATCTGCATGAGGAAATAGATTCACTAAAGAAGCAACTTGCTGCTACTGAAGCAACCATTGTCTCACAAAATAATGAAAAGGAAAACTTGTGGTTCAATTTTTGCCATGCGTCTCAGCAAAATCGGGAGCTTGTCCAAAGCAATGCACAATTGATCAAGGAATTGTTGATTGCTAGAGAAAAGTT
GAAGCTGCTCATGCATGACTACAGCCAAATGTCTGCTATGTACACAGTTAAGATAATGGAACTTGAGCAAAAAGTCACTGAATTGTCACAGGAAGTGGAAAGCATGCAAGAAACAAGAAATAAGGAACCCAGAGAAAATCAAGATATATGGCAGGGACTGTCAGAACACACATCATCTGGCGAAAGAGTACAAATATTTG
GCCATGATGACAGTAGTAAGGAACCGGATAGCTGTGTAAAGAAGAATGAATCTGGAAATGAACGGAATACATATGGGAAGAACTTGAAGATATGCCTGAGAAGGCGTTCGGATGATTTAAGCTACAAAGAACCTTCCCTGCGGAGAAAACTTAGGCAGGAAGAAGATCAAACCACGTCATCAAGGAAGTATCGGCGTGCT
CATTCTTACAGTGGACAAGGGGCTGTGGAGAAAAATTGTTATAATGTGATGTTGAATGTCTCTGGCACCCTACAACATGAGACTAAGCTTGGGTGTGTCCTAGATTCAACAGAATCCTCCAGAAATCTTCAGAGCAGTTCAGACTGCACCAAGAAAATACGTCAGAGTTCTGATGTCAAGCTACAGCAGCAGCAACAGAC
AGATCAGAGTTCTTGTAAGGAATCTTTAACTGCTGTCATAGATGAGATGCAACCATCAAGAAGGTCCTCAACTGGAAGGCCAGCACGAAAAGCAAAAGAGATTGTGACATCTTACAAGGAAGTTCCCCTTAAAACTAAACTACGAAGATCAGAATGATTGCTTGCCCAAACAGCTAGTTAGATGCCAGAATTGTCTTCTT
TCCCTGCACTTGACATCATCATGGTGTTAGAGATATATTTATATTTCTAATGACTAATATTATTTCTGGGGCCATTCTGTCATCATAAACGTTGCAAGTGAAGTCAACATCCATTTTTTGTTTCTAGGTTTTTCTTATTGCATTGTTTATATGTTTTCTATCTCTG
>TRINITY_DN115445_c2_g1_i1 from sample A1 / Example unspliced isoform:GCTCTATCACAACACCCGGGTGGAAGTTTAAAAAAAAGAACGTTATCCAGAAGTTTTAATAGCGGGAGTCTCCGCCTTTACGCTTCCATTGATTCAAACAAACACACGCCGAAGAAGCCGAAGGGCAACAAAAGCGGGACGACATCTCAATTCGAATTTTGGCTTGGGATTTCTTGCTTTTCCTCGTCATAGTCCATTAG
TTCGCCTGCAAGAACGTCCCTGGGTTCGAACTCGTGACCGCAATATAGAGATGGCAGCTGAAGAAAAGCTTGGAAAGTGCATTCCAAGCATGGCACCAATTGTAGCTAATGGAAGGAGGCAACTTTCAGATATCTCAAACACAGGCACACTTCCTCCATTAATGAAAAGAAAGGAGAATAGCTGTTTAGAACAGTTGAAC
AAATGCGATGAAATTCATCTGCATGAGGAAATAGATTCACTAAAGAAGCAACTTGCTGCTACTGAAGCAACCATTGTCTCACAAAATAATGAAAAGGAAAACTTGTGGTTCAATTTTTGCCATGCGTCTCAGCAAAATCGGGAGCTTGTCCAAAGCAATGCACAATTGATCAAGGAATTGTTGATTGCTAGAGAAAAGTT
GAAGCTGCTCATGCATGACTACAGCCAAATGTCTGCTATGTACACAGTTAAGATAATGGAACTTGAGCAAAAAGTCACTGAATTGTCACAGGAAGTGGAAAGCATGCAAGAAACAAGAAATAAGGAACCCAGAGAAAATCAAGATATATGGCAGGGACTGTCAGAACACACATCATCTGGCGAAAGAGTACAAATATTTG
GCCATGgttctgatactactttacaactctgttatattggttgtctttctttcagagtaagtgtttacaaatgacaatgttctgacagATGACAGTAGTAAGGAACCGGATAGCTGTGTAAAGAAGAATGAATCTGGAAATGAACGGAATACATATGGGAAGAACTTGAAGATATGCCTGAGAAGGCGTTCGGATGATTT
AAGCTACAAAGAACCTTCCCTGCGGAGAAAACTTAGGCAGGAAGAAGATCAAACCACGTCATCAAGGAAGTATCGGCGTGCTCATTCTTACAGTGGACAAGGGGCTGTGGAGAAAAATTGTTATAATGTGATGTTGAATGTCTCTGGCACCCTACAACATGAGACTAAGCTTGGGTGTGTCCTAGATTCAACAGAATCCT
CCAGAAATCTTCAGAGCAGTTCAGACTGCACCAAGAAAATACGTCAGAGTTCTGATGTCAAGCTACAGCAGCAGCAACAGACAGATCAGAGTTCTTGTAAGGAATCTTTAACTGCTGTCATAGATGAGATGCAACCATCAAGAAGGTCCTCAACTGGAAGGCCAGCACGAAAAGCAAAAGAGATTGTGACATCTTACAAG
GAAGTTCCCCTTAAAACTAAACTACGAAGATCAGAATGATTGCTTGCCCAAACAGCTAGTTAGATGCCAGAATTGTCTTCTTTCCCTGCACTTGACATCATCATGGTGTTAGAGATATATTTATATTTCTAATGACTAATATTATTTCTGGGGCCATTCTGTCATCATAAACGTTGCAAGTGAAGTCAACATCCATTTTT
TGTTTCTAGGTTTTTCTTATTGCATTGTTTATATGTTTTCTATCTCTG
Intron 8 GTACAAATAT ... GTTCTGACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 29.04 | 32 | 19.6 | 7.2 |
| A2 | 25.03 | 17 | 3.2 | 8.8 |
| A3 | 50.98 | 18 | 17.2 | 20.4 |
| A4 | 35.2 | 14 | 4.9 | 10.8 |
| A5 | 17.75 | 9 | 2.5 | 1.5 |
| A6 | 53.79 | 38.1 | 28.6 | 60.3 |
| A7 | 42.7 | 135 | 88.5 | 114.2 |
| A8 | 53.53 | 121.9 | 118.4 | 163.8 |
| A9 | 49.81 | 131.9 | 111.6 | 151.5 |
| A10 | 47.96 | 93.9 | 75.1 | 98.8 |
>TRINITY_DN115445_c2_g1_i2 from sample A1 / Example spliced isoformGCTCTATCACAACACCCGGGTGGAAGTTTAAAAAAAAGAACGTTATCCAGAAGTTTTAATAGCGGGAGTCTCCGCCTTTACGCTTCCATTGATTCAAACAAACACACGCCGAAGAAGCCGAAGGGCAACAAAAGCGGGACGACATCTCAATTCGAATTTTGGCTTGGGATTTCTTGCTTTTCCTCGTCATAGTCCATTAG
TTCGCCTGCAAGAACGTCCCTGGGTTCGAACTCGTGACCGCAATATAGAGATGGCAGCTGAAGAAAAGCTTGGAAAGTGCATTCCAAGCATGGCACCAATTGTAGCTAATGGAAGGAGGCAACTTTCAGATATCTCAAACACAGGCACACTTCCTCCATTAATGAAAAGAAAGGAGAATAGCTGTTTAGAACAGTTGAAC
AAATGCGATGAAATTCATCTGCATGAGGAAATAGATTCACTAAAGAAGCAACTTGCTGCTACTGAAGCAACCATTGTCTCACAAAATAATGAAAAGGAAAACTTGTGGTTCAATTTTTGCCATGCGTCTCAGCAAAATCGGGAGCTTGTCCAAAGCAATGCACAATTGATCAAGGAATTGTTGATTGCTAGAGAAAAGTT
GAAGCTGCTCATGCATGACTACAGCCAAATGTCTGCTATGTACACAGTTAAGATAATGGAACTTGAGGTAAGTCTGATAAAGATAATGGAAGTGAGGTGATTGGGACCCAGGTTCAAATCCCTTGAGTGGCTGTGGCTGTAAATATTTCCTTGTAGATATATGAAGTATTTCTCAATTAAAAAAAAGATTTTTGAATAGA
TTTTTTTATAGCATTGTTAATGATGGAGAAGATTTCTTGAAGGCTTATATTTCTGTGCAGCAAAAAGTCACTGAATTGTCACAGGAAGTGGAAAGCATGCAAGAAACAAGAAATAAGGAACCCAGAGAAAATCAAGATATATGGCAGGGACTGTCAGAACACACATCATCTGGCGAAAGAATGACAGTAGTAAGGAACCG
GATAGCTGTGTAAAGAAGAATGAATCTGGAAATGAACGGAATACATATGGGAAGAACTTGAAGATATGCCTGAGAAGGCGTTCGGATGATTTAAGCTACAAAGAACCTTCCCTGCGGAGAAAACTTAGGCAGGAAGAAGATCAAACCACGTCATCAAGGAAGTATCGGCGTGCTCATTCTTACAGTGGACAAGGGGCTGT
GGAGAAAAATTGTTATAATGTGATGTTGAATGTCTCTGGCACCCTACAACATGAGACTAAGCTTGGGTGTGTCCTAGATTCAACAGAATCCTCCAGAAATCTTCAGAGCAGTTCAGACTGCACCAAGAAAATACGTCAGAGTTCTGATGTCAAGCTACAGCAGCAGCAACAGACAGATCAGAGTTCTTGTAAGGAATCTT
TAACTGCTGTCATAGATGAGATGCAACCATCAAGAAGGTCCTCAACTGGAAGGCCAGCACGAAAAGCAAAAGAGATTGTGACATCTTACAAGGAAGTTCCCCTTAAAACTAAACTACGAAGATCAGAATGATTGCTTGCCCAAACAGCTAGTTAGATGCCAGAATTGTCTTCTTTCCCTGCACTTGACATCATCATGGTG
TTAGAGATATATTTATATTTCTAATGACTAATATTATTTCTGGGGCCATTCTGTCATCATAAACGTTGCAAGTGAAGTCAACATCCATTTTTTGTTTCTAGGTTTTTCTTATTGCATTGTTTATATGTTTTCTATCTCTG
>TRINITY_DN115445_c2_g1_i1 from sample A1 / Example unspliced isoform:GCTCTATCACAACACCCGGGTGGAAGTTTAAAAAAAAGAACGTTATCCAGAAGTTTTAATAGCGGGAGTCTCCGCCTTTACGCTTCCATTGATTCAAACAAACACACGCCGAAGAAGCCGAAGGGCAACAAAAGCGGGACGACATCTCAATTCGAATTTTGGCTTGGGATTTCTTGCTTTTCCTCGTCATAGTCCATTAG
TTCGCCTGCAAGAACGTCCCTGGGTTCGAACTCGTGACCGCAATATAGAGATGGCAGCTGAAGAAAAGCTTGGAAAGTGCATTCCAAGCATGGCACCAATTGTAGCTAATGGAAGGAGGCAACTTTCAGATATCTCAAACACAGGCACACTTCCTCCATTAATGAAAAGAAAGGAGAATAGCTGTTTAGAACAGTTGAAC
AAATGCGATGAAATTCATCTGCATGAGGAAATAGATTCACTAAAGAAGCAACTTGCTGCTACTGAAGCAACCATTGTCTCACAAAATAATGAAAAGGAAAACTTGTGGTTCAATTTTTGCCATGCGTCTCAGCAAAATCGGGAGCTTGTCCAAAGCAATGCACAATTGATCAAGGAATTGTTGATTGCTAGAGAAAAGTT
GAAGCTGCTCATGCATGACTACAGCCAAATGTCTGCTATGTACACAGTTAAGATAATGGAACTTGAGCAAAAAGTCACTGAATTGTCACAGGAAGTGGAAAGCATGCAAGAAACAAGAAATAAGGAACCCAGAGAAAATCAAGATATATGGCAGGGACTGTCAGAACACACATCATCTGGCGAAAGAgtacaaatatttg
gccatggttctgatactactttacaactctgttatattggttgtctttctttcagagtaagtgtttacaaatgacaatgttctgacagATGACAGTAGTAAGGAACCGGATAGCTGTGTAAAGAAGAATGAATCTGGAAATGAACGGAATACATATGGGAAGAACTTGAAGATATGCCTGAGAAGGCGTTCGGATGATTT
AAGCTACAAAGAACCTTCCCTGCGGAGAAAACTTAGGCAGGAAGAAGATCAAACCACGTCATCAAGGAAGTATCGGCGTGCTCATTCTTACAGTGGACAAGGGGCTGTGGAGAAAAATTGTTATAATGTGATGTTGAATGTCTCTGGCACCCTACAACATGAGACTAAGCTTGGGTGTGTCCTAGATTCAACAGAATCCT
CCAGAAATCTTCAGAGCAGTTCAGACTGCACCAAGAAAATACGTCAGAGTTCTGATGTCAAGCTACAGCAGCAGCAACAGACAGATCAGAGTTCTTGTAAGGAATCTTTAACTGCTGTCATAGATGAGATGCAACCATCAAGAAGGTCCTCAACTGGAAGGCCAGCACGAAAAGCAAAAGAGATTGTGACATCTTACAAG
GAAGTTCCCCTTAAAACTAAACTACGAAGATCAGAATGATTGCTTGCCCAAACAGCTAGTTAGATGCCAGAATTGTCTTCTTTCCCTGCACTTGACATCATCATGGTGTTAGAGATATATTTATATTTCTAATGACTAATATTATTTCTGGGGCCATTCTGTCATCATAAACGTTGCAAGTGAAGTCAACATCCATTTTT
TGTTTCTAGGTTTTTCTTATTGCATTGTTTATATGTTTTCTATCTCTG
Intron 9 GTATCCTTGA ... AAGTTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 24.29 | 53 | 24 | 10 |
| A2 | 19.07 | 31.8 | 9 | 6 |
| A3 | 28.36 | 24 | 17 | 2 |
| A4 | 39.13 | 14 | 16 | 2 |
| A5 | 27.27 | 8 | 4 | 2 |
| A6 | 35.9 | 25 | 17 | 11 |
| A7 | 20 | 100 | 35 | 15 |
| A8 | 19.81 | 83 | 17 | 24 |
| A9 | 20.47 | 136 | 47 | 23 |
| A10 | 17.01 | 100 | 27 | 14 |
>TRINITY_DN40501_c0_g1_i2 from sample A6 / Example spliced isoformTGGGGCTCTATCACAACACCCGGGTGGAAGTTTATAAAAAAGAACGTTATCCAGAAGTTTTAATAGCGGGAGTCTCCGCCTTTACGCATCCATTGATTCAAACAAACACACGCCGAAGAAGCCGAAGGGCAACAAAAGCGGGACGACATCTCAATTCGAATTTTGGCTTGGGATTTCTCGCTTTTCCTCGTCATAGTCCA
TTAGTTCGCCTGCAAGAACGTCCCTGGGTTCGAACTCGTGACCGCAATATAGAGATGGCAGCTGAAGAAAAGCTTGGAAAGTGCATTCCAAGCATGGCACCAATTGTAGCTAATGGAAGGAGGCAACTTTCAGATATCTCAAACACAGGCACACTTCCTCCATTAATGAAAAGAAAGGAGAATAGCTGTTTAGAACAGTT
GAACAAATGCGATGAAATTCATCTGCATGAGGAAATAGATTCACTAAAGAAGCAACTTGCTGCTACTGAAGCAACCATTGTCTCACAAAATAATGAAAAGGAAAACTTGTGGTTCAATTTTTGCCATGCGTCTCAGCAAAATCGGGAGCTTGTCCAAAGCAATGCACAATTGATCAAGGAATTGTTGATTGCTAGAGAAA
AGTTGAAGCTGCTCATGCATGACTACAGCCAAATGTCTGCTATGTACACAGTTAAGATAATGGAACTTGAGCAAAAAGTCACTGAATTGTCACAGGAAGTGGAAAGCATGCAAGAAACAAGAAATAAGGAACCCAGAGAAAATCAAGATATATGGCAGGGACTGTCAGAACACACATCATCTGGCGAAAGAGTACAAATA
TTTGGCCATGATGACAGTAGTAAGGAACCGGATAGCTGTGTAAAGAAGAATGAATCTGGAAATGAACGGAATACATATGGGAAGAACTTGAAGATATGCCTGAGAAGGCGTTCGGATGATTTAAGCTACAAAGAACCTTCCCTGCGGAGAAAACTTAGGCAGGAAGAAGATCAAACCACGTCATCAAGGAAGTATCGGCG
TGCTCATTCTTACAGTGGACAAGGGGCTGTGGAGAAAAATTGTTATAATGTGATGTTGAATGTCTCTGGCACCCTACAACATGAGACTAAGCTTGGGTGTGTCCTAGATTCAACAGAATCCTCCAGAAATCTTCAGAGCAGTTCAGACTGCACCAAGAAAATACGTCAGAGTTCTGATGTCAAGCTACAGCAGCAGCAAC
AGACAGATCAGAGTTCTTGTAAGGAATCTTTAACTGCTGTCATAGATGAGATGCAACCATCAAGAAGGTCCTCAACTGGAAGGCCAGCACGAAAAGCAAAAGAGATTGTGACATCTTACAAGGAAGTTCCCCTTAAAACTAAACTACGAAGATCAGAATGATTGCTTGCCCAAACAGCTAGTTAGATGCCAGAATTGTCT
TCTTTCCCTGCACTTGACATCATCATGGTGTTAGAGATATATTTATATTTCTAATGACTAATATTATTTCTGGGGCCATTCTGTCATCATAAACGTTGCAAGTGAAGTCAACATCCATTTTTTGTTTCTAGGTTTTTCTTATTGCACTGTTTATATGTTTTCTATCTCTGTTGGAGATACACTCTTCTATGTACTAAGTA
ATCCTTTTGAAGCAAATATTTAAGTAACATTTTGGAGGTGTAGTTATGTTGTTTCAAAAAAATTGTTAATATCACTGGTTGTTGTATTACCAGGTCGATGTTTATTGAATATCTG
>TRINITY_DN40501_c0_g1_i9 from sample A6 / Example unspliced isoform:TGGGGCTCTATCACAACACCCGGGTGGAAGTTTATAAAAAAGAACGTTATCCAGAAGTTTTAATAGCGGGAGTCTCCGCCTTTACGCATCCATTGATTCAAACAAACACACGCCGAAGAAGCCGAAGGGCAACAAAAGCGGGACGACATCTCAATTCGAATTTTGGCTTGGGATTTCTCGCTTTTCCTCGTCATAGTCCA
TTAGTTCGCCTGCAAGAACGTCCCTGGGTTCGAACTCGTGACCGCAATATAGAGATGGCAGCTGAAGAAAAGCTTGGAAAGTGCATTCCAAGCATGGCACCAATTGTAGCTAATGGAAGGAGGCAACTTTCAGATATCTCAAACACAGGCACACTTCCTCCATTAATGAAAAGAAAGGAGAATAGCTGTTTAGAACAGTT
GAACAAATGCGATGAAATTCATCTGCATGAGGAAATAGATTCACTAAAGAAGCAACTTGCTGCTACTGAgtatccttgatgcttagagatagctactagacctgaggatttgtagttccttcaaatgagttagttgagtatataattccagataatgtcaagtttattttctgtttaattgtattccactgttaagagat
aaattttatatttgatatttgaaattccttgatagacaagttttcagAGCAACCATTGTCTCACAAAATAATGAAAAGGAAAACTTGTGGTTCAATTTTTGCCATGCGTCTCAGCAAAATCGGGAGCTTGTCCAAAGCAATGCACAATTGATCAAGGAATTGTTGATTGCTAGAGAAAAGTTGAAGCTGCTCATGCATGA
CTACAGCCAAATGTCTGCTATGTACACAGTTAAGATAATGGAACTTGAGCAAAAAGTCACTGAATTGTCACAGGAAGTGGAAAGCATGCAAGAAACAAGAAATAAGGAACCCAGAGAAAATCAAGATATATGGCAGGGACTGTCAGAACACACATCATCTGGCGAAAGAGTACAAATATTTGGCCATGGTTCTGATACTA
CTTTACAACTCTGTTATATTGGTTGTCTTTCTTTCAGAGTAAGTGTTTACAAATGACAATGTTCTGACAGATGACAGTAGTAAGGAACCGGATAGCTGTGTAAAGAAGAATGAATCTGGAAATGAACGGAATACATATGGGAAGAACTTGAAGATATGCCTGAGAAGGCGTTCGGATGATTTAAGCTACAAAGAACCTTC
CCTGCGGAGAAAACTTAGGCAGGAAGAAGATCAAACCACGTCATCAAGGAAGTATCGGCGTGCTCATTCTTACAGTGGACAAGGGGCTGTGGAGAAAAATTGTTATAATGTGATGTTGAATGTCTCTGGCACCCTACAACATGAGACTAAGCTTGGGTGTGTCCTAGATTCAACAGAATCCTCCAGAAATCTTCAGAGCA
GTTCAGACTGCACCAAGAAAATACGTCAGAGTTCTGATGTCAAGCTACAGCAGCAGCAACAGACAGATCAGAGTTCTTGTAAGGAATCTTTAACTGCTGTCATAGATGAGATGCAACCATCAAGAAGGTCCTCAACTGGAAGGCCAGCACGAAAAGCAAAAGAGATTGTGACATCTTACAAGGAAGTTCCCCTTAAAACT
AAACTACGAAGATCAGAATGATTGCTTGCCCAAACAGCTAGTTAGATGCCAGAATTGTCTTCTTTCCCTGCACTTGACATCATCATGGTGTTAGAGATATATTTATATTTCTAATGACTAATATTATTTCTGGGGCCATTCTGTCATCATAAACGTTGCAAGTGAAGTCAACATCCATTTTTTGTTTCTAGGTTTTTCTT
ATTGCACTGTTTATATGTTTTCTATCTCTGTTGGAGATACACTCTTCTATGTACTAAGTAATCCTTTTGAAGCAAATATTTAAGTAACATTTTGGAGGTGTAGTTATGTTGTTTCAAAAAAATTGTTAATATCACTGGTTGTTGTATTACCAGGTCGATGTTTATTGAATATCTG
Intron 10 GTAAGTCTGA ... TTCTGTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 19.59 | 40.4 | 10.8 | 9.5 |
| A2 | 18.46 | 26.4 | 7.2 | 2 |
| A3 | 13.43 | 41.2 | 6.8 | 4.5 |
| A4 | 15.36 | 11.4 | 2 | 5.5 |
| A5 | 26.23 | 9.9 | 4 | 0 |
| A6 | 11.85 | 47.5 | 7.2 | 3 |
| A7 | 13.36 | 173.7 | 30.6 | 16.5 |
| A8 | 14.45 | 180.2 | 34.2 | 29.9 |
| A9 | 12.99 | 216.4 | 36.5 | 25.9 |
| A10 | 14.91 | 115 | 23.2 | 25.4 |
>TRINITY_DN115445_c2_g1_i6 from sample A1 / Example spliced isoformGCTCTATCACAACACCCGGGTGGAAGTTTAAAAAAAAGAACGTTATCCAGAAGTTTTAATAGCGGGAGTCTCCGCCTTTACGCTTCCATTGATTCAAACAAACACACGCCGAAGAAGCCGAAGGGCAACAAAAGCGGGACGACATCTCAATTCGAATTTTGGCTTGGGATTTCTTGCTTTTCCTCGTCATAGTCCATTAG
TTCGCCTGCAAGAACGTCCCTGGGTTCGAACTCGTGACCGCAATATAGAGATGGCAGCTGAAGAAAAGCTTGGAAAGTGCATTCCAAGCATGGCACCAATTGTAGCTAATGGAAGGAGGCAACTTTCAGATATCTCAAACACAGGCACACTTCCTCCATTAATGAAAAGAAAGGAGAATAGCTGTTTAGAACAGTTGAAC
AAATGCGATGAAATTCATCTGCATGAGGAAATAGATTCACTAAAGAAGCAACTTGCTGCTACTGAAGCAACCATTGTCTCACAAAATAATGAAAAGGAAAACTTGTGGTTCAATTTTTGCCATGCGTCTCAGCAAAATCGGGAGCTTGTCCAAAGCAATGCACAATTGATCAAGGAATTGTTGATTGCTAGAGAAAAGTT
GAAGCTGCTCATGCATGACTACAGCCAAATGTCTGCTATGTACACAGTTAAGATAATGGAACTTGAGCAAAAAGTCACTGAATTGTCACAGGAAGTGGAAAGCATGCAAGAAACAAGAAATAAGGAACCCAGAGAAAATCAAGATATATGGCAGGGACTGTCAGAACACACATCATCTGGCGAAAGAGTACAAATATTTG
GCCATGATGACAGTAGTAAGGAACCGGATAGCTGTGTAAAGAAGAATGAATCTGGAAATGAACGGAATACATATGGGAAGAACTTGAAGATATGCCTGAGAAGGCGTTCGGATGATTTAAGCTACAAAGAACCTTCCCTGCGGAGAAAACTTAGGCAGGAAGAAGATCAAACCACGTCATCAAGGAAGTATCGGCGTGCT
CATTCTTACAGTGGACAAGGGGCTGTGGAGAAAAATTGTTATAATGTGATGTTGAATGTCTCTGGCACCCTACAACATGAGACTAAGCTTGGGTGTGTCCTAGATTCAACAGAATCCTCCAGAAATCTTCAGAGCAGTTCAGACTGCACCAAGAAAATACGTCAGAGTTCTGATGTCAAGCTACAGCAGCAGCAACAGAC
AGATCAGAGTTCTTGTAAGGAATCTTTAACTGCTGTCATAGATGAGATGCAACCATCAAGAAGGTCCTCAACTGGAAGGCCAGCACGAAAAGCAAAAGAGATTGTGACATCTTACAAGGAAGTTCCCCTTAAAACTAAACTACGAAGATCAGAATGATTGCTTGCCCAAACAGCTAGTTAGATGCCAGAATTGTCTTCTT
TCCCTGCACTTGACATCATCATGGTGTTAGAGATATATTTATATTTCTAATGACTAATATTATTTCTGGGGCCATTCTGTCATCATAAACGTTGCAAGTGAAGTCAACATCCATTTTTTGTTTCTAGGTTTTTCTTATTGCATTGTTTATATGTTTTCTATCTCTG
>TRINITY_DN115445_c2_g1_i2 from sample A1 / Example unspliced isoform:GCTCTATCACAACACCCGGGTGGAAGTTTAAAAAAAAGAACGTTATCCAGAAGTTTTAATAGCGGGAGTCTCCGCCTTTACGCTTCCATTGATTCAAACAAACACACGCCGAAGAAGCCGAAGGGCAACAAAAGCGGGACGACATCTCAATTCGAATTTTGGCTTGGGATTTCTTGCTTTTCCTCGTCATAGTCCATTAG
TTCGCCTGCAAGAACGTCCCTGGGTTCGAACTCGTGACCGCAATATAGAGATGGCAGCTGAAGAAAAGCTTGGAAAGTGCATTCCAAGCATGGCACCAATTGTAGCTAATGGAAGGAGGCAACTTTCAGATATCTCAAACACAGGCACACTTCCTCCATTAATGAAAAGAAAGGAGAATAGCTGTTTAGAACAGTTGAAC
AAATGCGATGAAATTCATCTGCATGAGGAAATAGATTCACTAAAGAAGCAACTTGCTGCTACTGAAGCAACCATTGTCTCACAAAATAATGAAAAGGAAAACTTGTGGTTCAATTTTTGCCATGCGTCTCAGCAAAATCGGGAGCTTGTCCAAAGCAATGCACAATTGATCAAGGAATTGTTGATTGCTAGAGAAAAGTT
GAAGCTGCTCATGCATGACTACAGCCAAATGTCTGCTATGTACACAGTTAAGATAATGGAACTTGAGgtaagtctgataaagataatggaagtgaggtgattgggacccaggttcaaatcccttgagtggctgtggctgtaaatatttccttgtagatatatgaagtatttctcaattaaaaaaaagatttttgaataga
tttttttatagcattgttaatgatggagaagatttcttgaaggcttatatttctgtgcagCAAAAAGTCACTGAATTGTCACAGGAAGTGGAAAGCATGCAAGAAACAAGAAATAAGGAACCCAGAGAAAATCAAGATATATGGCAGGGACTGTCAGAACACACATCATCTGGCGAAAGAATGACAGTAGTAAGGAACCG
GATAGCTGTGTAAAGAAGAATGAATCTGGAAATGAACGGAATACATATGGGAAGAACTTGAAGATATGCCTGAGAAGGCGTTCGGATGATTTAAGCTACAAAGAACCTTCCCTGCGGAGAAAACTTAGGCAGGAAGAAGATCAAACCACGTCATCAAGGAAGTATCGGCGTGCTCATTCTTACAGTGGACAAGGGGCTGT
GGAGAAAAATTGTTATAATGTGATGTTGAATGTCTCTGGCACCCTACAACATGAGACTAAGCTTGGGTGTGTCCTAGATTCAACAGAATCCTCCAGAAATCTTCAGAGCAGTTCAGACTGCACCAAGAAAATACGTCAGAGTTCTGATGTCAAGCTACAGCAGCAGCAACAGACAGATCAGAGTTCTTGTAAGGAATCTT
TAACTGCTGTCATAGATGAGATGCAACCATCAAGAAGGTCCTCAACTGGAAGGCCAGCACGAAAAGCAAAAGAGATTGTGACATCTTACAAGGAAGTTCCCCTTAAAACTAAACTACGAAGATCAGAATGATTGCTTGCCCAAACAGCTAGTTAGATGCCAGAATTGTCTTCTTTCCCTGCACTTGACATCATCATGGTG
TTAGAGATATATTTATATTTCTAATGACTAATATTATTTCTGGGGCCATTCTGTCATCATAAACGTTGCAAGTGAAGTCAACATCCATTTTTTGTTTCTAGGTTTTTCTTATTGCATTGTTTATATGTTTTCTATCTCTG