sp|Q9LF88|Y3304_ARATH ----> Late embryogenesis abundant protein At3g53040
Intron 1 GCAGGCGAGA ... GGCAGAAAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 60.26 | 153 | 232 | 232 |
| A2 | 58.45 | 150 | 215 | 207 |
| A3 | 53.24 | 271 | 298 | 319 |
| A4 | 60 | 66 | 103 | 95 |
| A5 | 60.89 | 53 | 80 | 85 |
| A6 | 67.59 | 193 | 373 | 432 |
| A7 | 58.12 | 360 | 487 | 512 |
| A8 | 65.98 | 290 | 533 | 592 |
| A9 | 59.41 | 316 | 452 | 473 |
| A10 | 50.71 | 365 | 339 | 412 |
>TRINITY_DN40896_c0_g1_i5 from sample A7 / Example spliced isoformCACCCACCCATCCATCGTCCTTTCACGGATCCTTCACTATTCATGTTGTGACTGCAATATTTGATTTGTGAACAATACATAATTCTCTGGATTGCAATTCAACAAGGACGTACGTTTTTAGATCCAGATATTACCAGAGGAGTTTGGTTTGTATCGTTGTTTCTTCACTGTAGAGAGATGGCAACAACCCAACAGGATCG
TAGTCAGGATCGAAGTCAGGAAGAAGGTGAGCGGGCAACGACGAGGACTGATCCTAAGCAAGAAGAAGTAGAGCAACGGAAAAGAGCGGCCGCTGAGCACATGGAAAACGCTCAAAAGAGCCAAGGCGTTGCCAAGGACGCCGCATCCGAGACTCTCCAGTATTACCGCAACGTAGCGCAGGAGAACGCCATGGCGTCGC
TCATGGCGGCGGAGAAGCGTTACCAAGAAGCCAAGGAGACCGCGAGCGAGAAATTACAGCAGGCTAGAGAGGCCGCCGCGGATCGATCCGCCGTCGCTTCGGATTACGTCTCCGAGAAAGCTGTTGCTGCCAAGAACAACGCCACCGAAACGATGAAGCAGGCCAAAAATGCGGCGGCCGAGCTCGCCAGCGCCGCCAAG
GATTATACTGCGGAGAAAACCCGAGTTGCGAAAGATTATACCGTTTCGGGGTTCCAACAAGGAAAGGACGTTGTTGTGGACCGCGGGCAGGGTGTTCTGAGTTACACTGTGGATAAGACCAAGGAGGCCAAGGACACTGTGGCCGAACAGGTCCAGAAGGGCACTTCTGCTGCCGTGGAGTACACCAGGCAAAAGAGCAG
GGATGCTTATGATGTTACTGCCGAAAAATTGCAGCAAGGGAAAGAGGCTGCCGCCAATACTGGGCGCAGCACACTGGATTATACAACCCAGAAAGCGGCCGATGCCAAAGATGCCACCATGCAGAAGGCTGCGGAGGCTCGGGAAGCTACCAAGGAGAAGCTGGGGCAATATACAGAAGCAGCTCGTGATAAGGCGAGTC
AAGTGGGCACCGGAGCGAAGGAGAAAGCTCAAGAGACTACGCAGGCATCTACAGAGACTGCGAAGAATTTAAAAGAAGGAACGCAAGAAAAACTTGGACAAGCGAAGGACAGCACTTACGATGCAATCGAGAAGGCAAAGGAAGGCCTTCAGGCAAAGGAAGGCCAAACCACCGAGCAGGCCAAAGAGAAAGCCAAGGAG
AAAACCAGCGCTACTCAGCAGAAGGCGGTGGAAACGGGGCAGGCTGTTTCGGATAAAGCCAAGGAGAAAACCAGCGCTACTCAGCAGAAGGCGGTGGAAACGGGGCAGGCTGTTTCGGATAAGGCCAGGGAAGCGAAAGAAGCCGTCAAAGAAACAGCATGGGGAGCCACCGAACGAAGCAAGCGAGCCCTAGAAGAGGC
TCAAGAGCAGGCGAGGGAAAAAGCCCGTGCGATGGCAGAAAAGGCAGGCGAGACGAAAGAATCTGTTGAGCAGAAAATGGCCGAGGCAGCCCAACGAGCCAAGGAGTCTTGGGAGGCGCAGAGGAACCAAACCCTGGAACAGGTCCAGAAACAGGCGAGACCAACGAGCCAAGCAGTCATGGGAGGCTCAGGGTAATCAA
ACCCTGGAACAGGTGCAGGAGCAGGCGAGGGGAAAAGCCCGTGAAATGGCAGAAAAGGCAGGCGAGACAAAAGAGTCCATTGAGCAGAAAATGGCCGACGCAGCCCAACGAGCCAAGGAGTCTTGGGAGGCGCAGAGGAACCAAACCCTGGAACAGGTCCAGAAACAGGCGAGAGAAAAAGCCCGTGAAATGGCAGATCG
AAAGAGTCGGTGGAGCAGAAAATGGCCGAGGCAGCCCAACGAGCTAAGGAGTCCTGGGAGGCTCACGACATAAAGACCGAGTCCGTCAATGACGAGGATCCCGGGGAAGGGTATGGAGAAGCTTTCGTTGCAATCGTTGAAGAAGGCGATAAAGGAGTTCTGGAATCCGTGGGTGAGACCGTTATGAACTTGGCGAAGGC
AGCCAAGGAAACCGTGGTGGGCAAAGACTCTTAGGCACTTCTTACTACTGTTCATGTTCATGGTGATTCTTTTGTGTATTATATTTTATTGTTGTTCATCTGTGACAGATTTCGTAGTCGGTTTCGTTTGTCAAAATTGTGAAATTTGTGTTTGTTGCAAAGGGATTTTGATCCAATCGTGATTTGTTATTGTAAATATC
ATGTCATCATCTGTAATAAAAGTGTAATTTTTAGCAGCGGATTCTTATATTGTCAGCTTGGCTGCTTAGATTTTGCCTTCAAGGGACAGAGAGTAGGACTGCTGTATGTGCATATTTCTATGAAATCATGCATATTCAAGCAAGCTTGTCAAAAGAGTTATATGTATCAAACTTTATGTCAGCTGTTTTTTTGGTTCTTG
TTCAAGGTTGCACTAATTTTCAGAAATACATCACTGCTATAGTCATGTGGCGGCGGTTTTTATTATTGTTGAAAAAAA
>TRINITY_DN40896_c0_g1_i2 from sample A7 / Example unspliced isoform:CACCCACCCATCCATCGTCCTTTCACGGATCCTTCACTATTCATGTTGTGACTGCAATATTTGATTTGTGAACAATACATAATTCTCTGGATTGCAATTCAACAAGGACGTACGTTTTTAGATCCAGATATTACCAGAGGAGTTTGGTTTGTATCGTTGTTTCTTCACTGTAGAGAGATGGCAACAACCCAACAGGATCG
TAGTCAGGATCGAAGTCAGGAAGAAGGTGAGCGGGCAACGACGAGGACTGATCCTAAGCAAGAAGAAGTAGAGCAACGGAAAAGAGCGGCCGCTGAGCACATGGAAAACGCTCAAAAGAGCCAAGGCGTTGCCAAGGACGCCGCATCCGAGACTCTCCAGTATTACCGCAACGTAGCGCAGGAGAACGCCATGGCGTCGC
TCATGGCGGCGGAGAAGCGTTACCAAGAAGCCAAGGAGACCGCGAGCGAGAAATTACAGCAGGCTAGAGAGGCCGCCGCGGATCGATCCGCCGTCGCTTCGGATTACGTCTCCGAGAAAGCTGTTGCTGCCAAGAACAACGCCACCGAAACGATGAAGCAGGCCAAAAATGCGGCGGCCGAGCTCGCCAGCGCCGCCAAG
GATTATACTGCGGAGAAAACCCGAGTTGCGAAAGATTATACCGTTTCGGGGTTCCAACAAGGAAAGGACGTTGTTGTGGACCGCGGGCAGGGTGTTCTGAGTTACACTGTGGATAAGACCAAGGAGGCCAAGGACACTGTGGCCGAACAGGTCCAGAAGGGCACTTCTGCTGCCGTGGAGTACACCAGGCAAAAGAGCAG
GGATGCTTATGATGTTACTGCCGAAAAATTGCAGCAAGGGAAAGAGGCTGCCGCCAATACTGGGCGCAGCACACTGGATTATACAACCCAGAAAGCGGCCGATGCCAAAGATGCCACCATGCAGAAGGCTGCGGAGGCTCGGGAAGCTACCAAGGAGAAGCTGGGGCAATATACAGAAGCAGCTCGTGATAAGGCGAGTC
AAGTGGGCACCGGAGCGAAGGAGAAAGCTCAAGAGACTACGCAGGCATCTACAGAGACTGCGAAGAATTTAAAAGAAGGAACGCAAGAAAAACTTGGACAAGCGAAGGACAGCACTTACGATGCAATCGAGAAGGCAAAGGAAGGCCTTCAGGCAAAGGAAGGCCAAACCACCGAGCAGGCCAAAGAGAAAGCCAAGGAG
AAAACCAGCGCTACTCAGCAGAAGGCGGTGGAAACGGGGCAGGCTGTTTCGGATAAAGCCAAGGAGAAAACCAGCGCTACTCAGCAGAAGGCGGTGGAAACGGGGCAGGCTGTTTCGGATAAGGCCAGGGAAGCGAAAGAAGCCGTCAAAGAAACAGCATGGGGAGCCACCGAACGAAGCAAGCGAGCCCTAGAAGAGGC
TCAAGAGCAGGCGAGGGAAAAAGCCCGTGCGATGGCAGAAAAGGCAGGCGAGACGAAAGAATCTGTTGAGCAGAAAATGGCCGAGGCAGCCCAACGAGCCAAGGAGTCTTGGGAGGCGCAGAGGAACCAAACCCTGGAACAGGTCCAGAAACAGGCGAGAAGGCCCAGGGTAATCAAACTCTGGAACAGGTCCAGAAGCA
GGCGAGGGAGAAAGCCCGCGAAATGGCAGAAAAGGCAGGCGAGACTAAAGAGTCCGTTGAGCAGAAAATGGCCGAGGCAGCTCAACGAGCCAAGGAGTCATGGGAGGCTCAGACCAACGAGCCAAGCAGTCATGGGAGGCTCAGGGTAATCAAACCCTGGAACAGGTGCAGGAGCAGGCGAGGGGAAAAGCCCGTGAAAT
GGCAGAAAAGgcaggcgagactaaagagtccgttgagcagaaaatggccgaggcagctcaacgagccaaggagtcatgggaggctcagagtaatcaaaccctggaacaggtgcaggagcaggcgagggaaaaagcccgtgaaatggcagaaaagGCAGGCGAGACAAAAGAGTCCATTGAGCAGAAAATGGCCGACGCAG
CCCAACGAGCCAAGGAGTCTTGGGAGGCGCAGAGGAACCAAACCCTGGAACAGGTCCAGAAACAGGCGAGAGAAAAAGCCCGTGAAATGGCAGA
Intron 2 GCAGGCGAGA ... GGCAGAAAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 49.05 | 174 | 103 | 232 |
| A2 | 49.06 | 163 | 99 | 215 |
| A3 | 41.81 | 309 | 146 | 298 |
| A4 | 51.79 | 74 | 56 | 103 |
| A5 | 50 | 58 | 36 | 80 |
| A6 | 55.9 | 215 | 172 | 373 |
| A7 | 46.87 | 390 | 201 | 487 |
| A8 | 53.24 | 321 | 198 | 533 |
| A9 | 48.16 | 352 | 202 | 452 |
| A10 | 37.89 | 386 | 132 | 339 |
>TRINITY_DN40896_c0_g1_i1 from sample A7 / Example spliced isoformCACCCACCCATCCATCGTCCTTTCACGGATCCTTCACTATTCATGTTGTGACTGCAATATTTGATTTGTGAACAATACATAATTCTCTGGATTGCAATTCAACAAGGACGTACGTTTTTAGATCCAGATATTACCAGAGGAGTTTGGTTTGTATCGTTGTTTCTTCACTGTAGAGAGATGGCAACAACCCAACAGGATCG
TAGTCAGGATCGAAGTCAGGAAGAAGGTGAGCGGGCAACGACGAGGACTGATCCTAAGCAAGAAGAAGTAGAGCAACGGAAAAGAGCGGCCGCTGAGCACATGGAAAACGCTCAAAAGAGCCAAGGCGTTGCCAAGGACGCCGCATCCGAGACTCTCCAGTATTACCGCAACGTAGCGCAGGAGAACGCCATGGCGTCGC
TCATGGCGGCGGAGAAGCGTTACCAAGAAGCCAAGGAGACCGCGAGCGAGAAATTACAGCAGGCTAGAGAGGCCGCCGCGGATCGATCCGCCGTCGCTTCGGATTACGTCTCCGAGAAAGCTGTTGCTGCCAAGAACAACGCCACCGAAACGATGAAGCAGGCCAAAAATGCGGCGGCCGAGCTCGCCAGCGCCGCCAAG
GATTATACTGCGGAGAAAACCCGAGTTGCGAAAGATTATACCGTTTCGGGGTTCCAACAAGGAAAGGACGTTGTTGTGGACCGCGGGCAGGGTGTTCTGAGTTACACTGTGGATAAGACCAAGGAGGCCAAGGACACTGTGGCCGAACAGGTCCAGAAGGGCACTTCTGCTGCCGTGGAGTACACCAGGCAAAAGAGCAG
GGATGCTTATGATGTTACTGCCGAAAAATTGCAGCAAGGGAAAGAGGCTGCCGCCAATACTGGGCGCAGCACACTGGATTATACAACCCAGAAAGCGGCCGATGCCAAAGATGCCACCATGCAGAAGGCTGCGGAGGCTCGGGAAGCTACCAAGGAGAAGCTGGGGCAATATACAGAAGCAGCTCGTGATAAGGCGAGTC
AAGTGGGCACCGGAGCGAAGGAGAAAGCTCAAGAGACTACGCAGGCATCTACAGAGACTGCGAAGAATTTAAAAGAAGGAACGCAAGAAAAACTTGGACAAGCGAAGGACAGCACTTACGATGCAATCGAGAAGGCAAAGGAAGGCCTTCAGGCAAAGGAAGGCCAAACCACCGAGCAGGCCAAAGAGAAAGCCAAGGAG
AAAACCAGCGCTACTCAGCAGAAGGCGGTGGAAACGGGGCAGGCTGTTTCGGATAAAGCCAAGGAGAAAACCAGCGCTACTCAGCAGAAGGCGGTGGAAACGGGGCAGGCTGTTTCGGATAAGGCCAGGGAAGCGAAAGAAGCCGTCAAAGAAACAGCATGGGGAGCCACCGAACGAAGCAAGCGAGCCCTAGAAGAGGC
TCAAGAGCAGGCGAGGGAAAAAGCCCGTGCGATGGCAGAAAAGGCAGGCGAGACGAAAGAATCTGTTGAGCAGAAAATGGCCGAGGCAGCCCAACGAGCCAAGGAGTCTTGGGAGGCGCAGAGGAACCAAACCCTGGAACAGGTCCAGAAACAGGCGAGAAGGCCCAGGGTAATCAAACTCTGGAACAGGTCCAGAAGCA
GGCGAGGGAGAAAGCCCGCGAAATGGCAGAAAAGGCAGGCGAGACTAAAGAGTCCGTTGAGCAGAAAATGGCCGAGGCAGCCCAACGAGCCAAGCAGTCATGGGAGGCTCAGGGTAATCAAACCCTGGAACAGGTGCAGGAGCAGGCGAGGGGAAAAGCCCGTGAAATGGCAGAAAAGGCAGGCGAGACAAAAGAGTCCA
TTGAGCAGAAAATGGCCGACGCAGCCCAACGAGCCAAGGAGTCTTGGGAGGCGCAGAGGAACCAAACCCTGGAACAGGTCCAGAAACAGGCGAGAGAAAAAGCCCGTGAAATGGCAGA
>TRINITY_DN40896_c0_g1_i2 from sample A7 / Example unspliced isoform:CACCCACCCATCCATCGTCCTTTCACGGATCCTTCACTATTCATGTTGTGACTGCAATATTTGATTTGTGAACAATACATAATTCTCTGGATTGCAATTCAACAAGGACGTACGTTTTTAGATCCAGATATTACCAGAGGAGTTTGGTTTGTATCGTTGTTTCTTCACTGTAGAGAGATGGCAACAACCCAACAGGATCG
TAGTCAGGATCGAAGTCAGGAAGAAGGTGAGCGGGCAACGACGAGGACTGATCCTAAGCAAGAAGAAGTAGAGCAACGGAAAAGAGCGGCCGCTGAGCACATGGAAAACGCTCAAAAGAGCCAAGGCGTTGCCAAGGACGCCGCATCCGAGACTCTCCAGTATTACCGCAACGTAGCGCAGGAGAACGCCATGGCGTCGC
TCATGGCGGCGGAGAAGCGTTACCAAGAAGCCAAGGAGACCGCGAGCGAGAAATTACAGCAGGCTAGAGAGGCCGCCGCGGATCGATCCGCCGTCGCTTCGGATTACGTCTCCGAGAAAGCTGTTGCTGCCAAGAACAACGCCACCGAAACGATGAAGCAGGCCAAAAATGCGGCGGCCGAGCTCGCCAGCGCCGCCAAG
GATTATACTGCGGAGAAAACCCGAGTTGCGAAAGATTATACCGTTTCGGGGTTCCAACAAGGAAAGGACGTTGTTGTGGACCGCGGGCAGGGTGTTCTGAGTTACACTGTGGATAAGACCAAGGAGGCCAAGGACACTGTGGCCGAACAGGTCCAGAAGGGCACTTCTGCTGCCGTGGAGTACACCAGGCAAAAGAGCAG
GGATGCTTATGATGTTACTGCCGAAAAATTGCAGCAAGGGAAAGAGGCTGCCGCCAATACTGGGCGCAGCACACTGGATTATACAACCCAGAAAGCGGCCGATGCCAAAGATGCCACCATGCAGAAGGCTGCGGAGGCTCGGGAAGCTACCAAGGAGAAGCTGGGGCAATATACAGAAGCAGCTCGTGATAAGGCGAGTC
AAGTGGGCACCGGAGCGAAGGAGAAAGCTCAAGAGACTACGCAGGCATCTACAGAGACTGCGAAGAATTTAAAAGAAGGAACGCAAGAAAAACTTGGACAAGCGAAGGACAGCACTTACGATGCAATCGAGAAGGCAAAGGAAGGCCTTCAGGCAAAGGAAGGCCAAACCACCGAGCAGGCCAAAGAGAAAGCCAAGGAG
AAAACCAGCGCTACTCAGCAGAAGGCGGTGGAAACGGGGCAGGCTGTTTCGGATAAAGCCAAGGAGAAAACCAGCGCTACTCAGCAGAAGGCGGTGGAAACGGGGCAGGCTGTTTCGGATAAGGCCAGGGAAGCGAAAGAAGCCGTCAAAGAAACAGCATGGGGAGCCACCGAACGAAGCAAGCGAGCCCTAGAAGAGGC
TCAAGAGCAGGCGAGGGAAAAAGCCCGTGCGATGGCAGAAAAGGCAGGCGAGACGAAAGAATCTGTTGAGCAGAAAATGGCCGAGGCAGCCCAACGAGCCAAGGAGTCTTGGGAGGCGCAGAGGAACCAAACCCTGGAACAGGTCCAGAAACAGGCGAGAAGGCCCAGGGTAATCAAACTCTGGAACAGGTCCAGAAGCA
GGCGAGGGAGAAAGCCCGCGAAATGGCAGAAAAGgcaggcgagactaaagagtccgttgagcagaaaatggccgaggcagctcaacgagccaaggagtcatgggaggctcagaccaacgagccaagcagtcatgggaggctcagggtaatcaaaccctggaacaggtgcaggagcaggcgaggggaaaagcccgtgaaat
ggcagaaaagGCAGGCGAGACTAAAGAGTCCGTTGAGCAGAAAATGGCCGAGGCAGCTCAACGAGCCAAGGAGTCATGGGAGGCTCAGAGTAATCAAACCCTGGAACAGGTGCAGGAGCAGGCGAGGGAAAAAGCCCGTGAAATGGCAGAAAAGGCAGGCGAGACAAAAGAGTCCATTGAGCAGAAAATGGCCGACGCAG
CCCAACGAGCCAAGGAGTCTTGGGAGGCGCAGAGGAACCAAACCCTGGAACAGGTCCAGAAACAGGCGAGAGAAAAAGCCCGTGAAATGGCAGA