sp|Q39199|RECAC_ARATH ----> DNA repair protein recA homolog 1, chloroplastic
Intron 1 GTATGTTCTA ... AATTTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 17.93 | 44.4 | 7.2 | 13 |
| A2 | 17.97 | 23 | 6.7 | 3.7 |
| A3 | 23.73 | 13.9 | 4 | 4.7 |
| A4 | 9.95 | 28.8 | 3.6 | 3 |
| A5 | 12.33 | 11.4 | 1 | 2.3 |
| A6 | 8.33 | 3 | 0 | 0.7 |
| A7 | 4.97 | 31 | 1.7 | 2 |
| A8 | 3.75 | 24.8 | 1.1 | 1 |
| A9 | 5.4 | 19.1 | 1.1 | 1.3 |
| A10 | 5.47 | 26.8 | 0 | 3.7 |
>TRINITY_DN114519_c0_g1_i7 from sample A1 / Example spliced isoformACTATTACGAGGGGTTGTAAAAACAAAATTTCATGTGACTATCGCCGAAAAAACAAAAATCTAAAATTGGGATAATCCCCAAACGAGATGATTACATAAAATAAACAAAATTCGAATCCTGCCTTCATCTATTATATAGCAGGCTAGCAGCCTTCGTATTGGTATTGAAGTCACTACACGCTTGTTTGGACTCCAAGAAC
ACATCCTCACTTGTGTGCACATACCATTATGCTCCCCGTTGCCTCCTGCAACTTCAAAGGCATGGAACAAATGCTCAACTGAATTAAGGCTCCATAAAATTAAACACATTCTGTATCAGGAAGGAGTACGAGCATGATGACTACGGGGAACCAATGTGTATGTGGGGTTGGGCTCAACTCCTCTTTTTCACTGTTCCCTC
CTCCCATATCTACCTTTAATGCAAGTTTTGTTCTTCATTTGCCTTCTTCGGGGAAGAGGCTTTTGTTCACAGTCAGAGCAAAAGCTAACAATGGGGCTTTTCCAACCGATAGGTCCATGGACAGGCAAAAGGCTTTAGAGGTAGCTATGAATGATATAAATAGCTGTTTTGGCAAGGGAAGTGTTACAAGACTTGGAAGT
GCAGGTGGAGCTCTAGTAGAGACATTTCCGAGTGGATGTCTTACTTTAGATCTGGCTTTAGGTGGTGGTCTACCGAAAGGACGAATTGTGGAGATATATGGTCCAGAGAGCAGTGGAAAGACCACTTTAGCACTCCATGCAATTGCTGAAGTACAAAAATTGGGTGGCAATGCTATGCTTGTGGATGCTGAGCATGTTTT
TGATCCATTCTATTCAAAGGCATTGGGGGTGGATGTAGAAAGCCTAATTGTTTGCCAGCCAGACAGTGGAGAGATGGCCTTGGAAACTGCTGATCGTATGTGCAGGTCTGGAGGCGTGGATCTGATTTGCATTGATTCTGTTGCTGCTTTGACCCCCAGGGCTGAAATTGAAGGGGAAATAGGGATGATGCAAATTGGTC
TACAAGCACGTCTCATGAGCCAAGCGTTGCGTAAAATGTCAGGCAATGCTTCTAAAGCTGGCTGTACTCTCATATTTCTCAACCAAATTCGACATAAGATTGGTGTATTCTATGGAAGTCCAGAAGTCACTAGTGGGGGCATTGCTCTGAAATTCTTTGCATCACTCCGTCTTGAAATCCGTTCTGCTGGGAAAATAAAG
TCTCTTAAGGGAGATCAAGACATTGGAGTAAGAACACGTATAAGAGTGCAGAAAAGCAAGGTACTTCTAAAAACAATCTATAGTTTAACAATAGAGTTGCATATTTATTCAATTTATTTCCATATTCTCTCAGACAAGGCTGGAGGTAGTTTATGCAATCCACTGTTAATATGTTAACCATACATGTGTTTATCGGTCTT
GTTGATTCTATTTGGTCACTTGTGTATGTCAGAATGTTTTCACTCTTTCTCACATATATAAGTTGTCATATATAGCCTTTTAAACAAGAAATTGATACCTTAGTGTTAAAAGAACCGTAATCATACCTACTCAATCCATACATGCAAATGAAATATTAATTTTATTGGCAAGGAATAAAGATAAATCACTTTTCATAAGA
ACAATACCTGTGAACCCATGCTAAAAATGTCAGGTTTGAGTTTTGGGTTAACTGGTTCTTTACAATAGCACTGTTTTAAATTTAGAATGTTTGGGGTTTCTGATCATGTTCACTCTCTTAGGTTGTGAACAAAAATTTGACTTGTATTTTGACATATTTTGTTCAATTGTGAATATTAATAAATTTTCTCTTTTCTTTCT
CTATAACATCCAAGAACCATAACTACAGGATAATGTAGAGAAATAAAATACTTGGAGCAAAGTGATGGGTTAAAGTTGGTTGCACTAGACTGGGATGTGTTACCCC
>TRINITY_DN114519_c0_g1_i4 from sample A1 / Example unspliced isoform:ACTATTACGAGGGGTTGTAAAAACAAAATTTCATGTGACTATCGCCGAAAAAACAAAAATCTAAAATTGGGATAATCCCCAAACGAGATGATTACATAAAATAAACAAAATTCGAATCCTGCCTTCATCTATTATATAGCAGGCTAGCAGCCTTCGTATTGGTATTGAAGTCACTACACGCTTGTTTGGACTCCAAGAAC
ACATCCTCACTTGTGTGCACATACCATTATGCTCCCCGTTGCCTCCTGCAACTTCAAAGGCATGGAACAAATGCTCAACTGAATTAAGGCTCCATAAAATTAAACACATTCTGTATCAGGAAGGAGTACGAGCATGATGACTACGGGGAACCAATGTGTATGTGGGGTTGGGCTCAACTCCTCTTTTTCACTGTTCCCTC
CTCCCATATCTACCTTTAATGCAAGTTTTGTTCTTCATTTGCCTTCTTCGGGGAAGAGGCTTTTGTTCACAGTCAGAGCAAAAGCTAACAATGGGGCTTTTCCAACCGATAGGTCCATGGACAGGCAAAAGGCTTTAGAGGTAGCTATGAATGATATAAATAGCTGTTTTGGCAAGGGAAGTGTTACAAGACTTGGAAGT
GCAGGTGGAGCTCTAGTgtatgttctatgtacttattcttgcattctttttaaaaaaaaatgaatgctgctttatcgaatacaattttattattttctgatacttctaattttgcagAGAGACATTTCCGAGTGGATGTCTTACTTTAGATCTGGCTTTAGGTGGTGGTCTACCGAAAGGACGAATTGTGGAGGTGGTAT
TTTCCCCATTTTTCTATGCATCTTATCACATGCTCTATACATCTGTCAAAGATACTTAGATTGAGAGAAGTTAAGTGAATAAAATCTAAATTTCAATATACAGAAGTTATGAATGGCCAATACAAGAATAAG
Intron 2 GTAAGCACAA ... TCTAATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 28.57 | 10 | 6 | 2 |
| A2 | 50 | 6 | 8 | 4 |
| A3 | 26.67 | 11 | 4 | 4 |
| A4 | 20 | 6 | 1 | 2 |
| A5 | 7.14 | 13 | 2 | 0 |
| A6 | 14.29 | 9 | 1 | 2 |
| A7 | 4.26 | 45 | 4 | 0 |
| A8 | 7.32 | 38 | 5 | 1 |
| A9 | 8.33 | 33 | 6 | 0 |
| A10 | 4.92 | 29 | 3 | 0 |
>TRINITY_DN104634_c0_g1_i6 from sample A3 / Example spliced isoformCACGCTTGTTTGGACTCCAAGAACACATCCTCACTTGTGTGCACATACCATTATGCTCCCCGTTGCCTCCTGCAACTTCAAAGGCATGGAACAAATGCTCAACTGAATTAAGGCTCCATAAAATTAAACACATTCTGTATCAGGAAGGAGTACGAGCATGATGACTACGGGGAACCAATGTGTATGTGGGGTTGGGCTCA
ACTCCTCTTTTTCACTGTTCCCTCCTCCCATATCTACCTTTAATGCAAGTTTTGTTCTTCATTTGCCTTCTTCGGGGAAGAGGCTTTTGTTCACAGTCAGAGCAAAAGCTAACAATGGGGCTTTTCCAACCGATAGGTCCATGGACAGGATATATGGTCCAGAGAGCAGTGGAAAGACCACTTTAGCACTCCATGCAATT
GCTGAAGTACAAAAATTGGGTGGCAATGCTATGCTTGTGGATGCTGAGCATGTTTTTGATCCATTCTATTCAAAGGCATTGGGGGTGGATGTAGAAAGCCTAATTGTTTGCCAGCCAGACAGTGGAGAGATGGCCTTGGAAACTGCTGATCGTATGTGCAGGTCTGGAGGCGTGGATCTGATTTGCATTGATTCTGTTGC
TGCTTTGACCCCCAGGGCTGAAATTGAAGGGGAAATAGGGATGATGCAAATTGGTCTACAAGCACGTCTCATGAGCCAAGCGTTGCGTAAAATGTCAGGCAATGCTTCTAAAGCTGGCTGTACTCTCATATTTCTCAACCAAATTCGACATAAGATTGGTGTATTCTATGGAAGTCCAGAAGTCACTAGTGGGGGCATTG
CTCTGAAATTCTTTGCATCACTCCGTCTTGAAATCCGTTCTGCTGGGAAAATAAAGTCTCTTAAGGGAGATCAAGACATTGGAGTAAGAACACGTATAAGAGTGCAGAAAAGCAAGGTTTCAAGGCCCTATAAACAAGCAGAGTTTGATATAATCTTTGGTGAAGGTGTCAACAGTCTGGGATGCATTTTGGATTGTTCA
GAAATGCTGGATATTGTTTCTAAAAAGGGTTCATGGTACAGTTATGGGGATATAAGGCTGGGCCAGGGTCGGGATAGAGCATTGCAATACCTTCAGGAGACTCCTCTTCTTTCTGTTGAGATAGAAAAGGCAGTGCGTACTCGGATGTCAGAAGAATTGGCTATTGGTAGAGACCCATCCCATGGAATAAGCTCATTTTC
ACCAGGGGAATTCCAATCAGAGAGTGAAGGAGAGTAAAGGATGTGGCAAATTCAATGAATCGACATAGTTGTACCATAACATTTAATTATCATTCTTATTAAAACCCAAGAGCGGTTATATTTGTCTAAAATAAATCGCATGTTTGGATAAATAAAATTATTTATGGTTTATTGAATTTTAGGCTCCTAATATGATATCA
ACGCAAAATTGAGTTTTTGTTATTGAATGCCTAAGATATGTCAAAGAATAGGTATAGAGGCACATCTGTAATAAAGTAATATAAAATATGCACATTTACCCTAAACAATATCATATAATATATGATAATTTTGCAAAAAGAATGACAACTTATGGC
>TRINITY_DN104634_c0_g1_i3 from sample A3 / Example unspliced isoform:CTATTTGTACATATTTCAGCAAAAGGCTTTAGAGGTAGCTATGAATGATATAAATAGCTGTTTTGGCAAGGGAAGTGTTACAAGACTTGGAAGTGCAGGTGGAGCTCTAGTAGAGACATTTCCGAGTGGATGTCTTACTTTAGATCTGGCTTTAGGTGGTGGTCTACCGAAAGGACGAATTGTGGAGATATATGGTCCAG
AGAGCAGTGGAAAGACCACTTTAGCACTCCATGCAATTGCTGAAGTACAAAAATTGGGTGGCAATGCTATGCTTGTGGATGCTGAGCATGTTTTTGATCCATTCTATTCAAAGGCATTGGGGGTGGATGTAGAAAGCCTAATTGTTTGCCAGCCAGACAGTGGAGAGATGGCCTTGGAAACTGCTGATCGTATGTGCAGG
TCTGGAGGCGTGGATCTGATTTGCATTGATTCTGTTGCTGCTTTGACCCCCAGGGCTGAAATTGAAGGGGAAATAGGGATGATGCAAATTGGTCTACAAGCACGTCTCATGAGCCAAGCGTTGCGTAAAATGTCAGGCAATGCTTCTAAAGCTGGCTGTACTCTCATATTTCTCAACCAAATTCGACATAAGATTGGTGT
ATTCTATGGAAGTCCAGAAGTCACTAGTGGGGGCATTGCTCTGAAATTCTTTGCATCACTCCGTCTTGAAATCCGTTCTGCTGGGAAAATAAAGTCTgtaagcacaacatccctccactatctcgttttttcagtaatctgtttctggtattcatatggtaatatcttctgtattttagtaacatttccgaaaggagtcc
tgtttgttctaatgcagCTTAAGGGAGATCAAGACATTGGAGTAAGAACACGTATAAGAGTGCAGAAAAGCAAGGTACTTCTAAAAACAATCTATAGTTTAACAATAGAGTTGCATATTTATTCAATTTATTTCCATATTCTCTCAGACAAGGCTGGAGGTAGTTTATGCAATCCACTGTTAATATGTTAAC