sp|Q9LFS8|SMC5_ARATH ----> Structural maintenance of chromosomes protein 5
Intron 1 GTCATCATCT ... ATTGTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 40.91 | 26 | 18 | 7 |
| A2 | 40.54 | 22 | 15 | 1 |
| A3 | 27.78 | 26 | 10 | 6 |
| A4 | 29.03 | 22 | 9 | 6 |
| A5 | 62.5 | 3 | 5 | 0 |
| A6 | 34.78 | 30 | 16 | 2 |
| A7 | 35.71 | 90 | 50 | 16 |
| A8 | 34.69 | 64 | 34 | 9 |
| A9 | 38.27 | 100 | 62 | 22 |
| A10 | 37.36 | 57 | 34 | 7 |
>TRINITY_DN44249_c0_g3_i7 from sample A9 / Example spliced isoformGGTGGGGTTGGGATCCATTCGACTCGACTACCATTTTTTCCCTTCCAAGGGCGGCCGCCATAACCTGCACAAATTGGGAGTCAGTGCTGAATTCAACAGTTAAATTAAACTAGCACATTCCAGGAATTGCTCCGTGGATTTGAGTATATAGGTCCGCCCACTTTTGGGCGAAAATGGTCTCTACAGAATCAGGAAAGTGG
TTGCAGGATGCCCTGATCGATCTATGCAGCAAAGTGGAATCTGGGTTGCAGTTGGACCATGATGTGATTACGGGTCTCGTCTCATATTGTGAACTTGCTGCTCCTGAGGATGCCAATGAGTATTTGACTAACATTGTTGGCCATGATTTAAGCCAGGGTATTATAGCTGAATACCTGCAAAGGAGGTCCTCTAAGAGAAA
TCTTTATTTAGACATGATCCCCAAAGAGGATATGCAAGCCTATATGAAACCCCCAGCAGAGGAATTGTGGTCTGCTGGAAACAGAAGAGCAGCAAAACGCTCTAATGAAAGGAACTCTGTAGCTGTTCAGCAAGAAGCAAAAGCCCTGACAGAAATTTCAGAAGCAAAGGATGTTGCAAAGGGGAAAGCTAATGCTACCA
GGAAAAAGAAAGGGGCTAAAGTGATTTCACTTGCAGAAGCTGCAAAAGGCTCAATTGTCCTCCAAAGTGGTCAACCTTGTGATTGCCAAGCTCGTAGGCATAGACTTATAGCAAATTGTCTATCCTGTGGCAAGATCATTTGTGAACAGGCAGGAGAAGGTCCTTGCAACTTTTGTGGAGCACTTGTGTTACGTGAAGGT
TCTAATTATGCAGGGCTTGGTGACGCTGCATTCCCTGTATCTGAAGGAGAAGCTGCAGCAGAGGCATTTAAGAATAGGCTTGTTGAGTATGACCGTAATGCGGCTGAACGGACAGTAGTGATTGATGATCAGAGTGATTATTATGAAGTTGAGGGAAATGCATGGATTTCAGAAGAGGAAAAGCAACTGTTGCGAAAGAA
ACAGGAAGAAATTGCAGAAGCAGATCGAGCTCGTCGAAATAAAGTTGTTGTCACTTTTGATTTAGTTGGTCGTAAGGTTGTGATGACTGAGAAAGAAGCAGCAGAGATGGAGACACAAAGCAGTATACTGCGGCCCACTTTTAATTCTCAAGATAAAACTTGCAATCGTATAAAGGCAAATCCAAATATAAGAGATCTGC
CAGTTTTTGTAGATACTCATGAATCAGGTCGTGCAAAGACATCACAACCTTGTAAGAATGGAAAAATGCCAGTCAGATCCCAGACTGGTGTGTGCTTTGAGATAAGTGGAAGAGTGCAGCATGATGATCCAGTGGTGGAGGCACTTTCCTCAGGTGGATTTAAGGCAGAAACACCTGTTGAAGGTCCATGGAAAGCTCCA
AAGGTCAATATGCAATTTTGTGACCCTGAAGGAGAAAATAATGAATGCTTAAGTTGATGCTTGACACTATTCTAGAGGAAGTGTAGGAGGTTTAAATTAAAAAATTCTTGTAATTGCCACATTACAATTAAAAAAAATGTGTGCAAAGCCATTGATATTCCGATGGATCAATGATTTAATTATGCAAAGTACAAAAATAA
AATCCCTTAATGTTTATTCAATTTAGTTACACGAGGTAAGGTTCACACTGTAAAAGCTTGAATATTATACCCACAAATTGACTGAACTTTGGTTGAGATTACCCACAAATTGACTGAACTTTGGTTGAGATAGTTTTTCTCATCAAAGATCTTTGTTATTAAAGAATGTCCAGGACTCTCTCCACAAAGAACACTACAAA
ATGGTTTGCAAGATTTAACCCTGTCGTTGGACCTGAGATGTATTCAAACAACAAAGATGTTGGAATCCGATGCGTGTTGCAAGCTCCATTCTCCAACCTTGTTGGATGTTGGCAAATTGAAATCAGTGACTATTGTTATATCTCATGCCCCT
>TRINITY_DN44249_c0_g3_i1 from sample A9 / Example unspliced isoform:GGTGGGGTTGGGATCCATTCGACTCGACTACCATTTTTTCCCTTCCAAGGGCGGCCGCCATAACCTGCACAAATTGGGAGTCAGTGCTGAATTCAACAGTTAAATTAAACTAGCACATTCCAGGAATTGCTCCGTGGATTTGAGTATATAGGTCCGCCCACTTTTGGGCGAAAATGGTCTCTACAGAATCAGGAAAGTGG
TTGCAGGATGCCCTGATCGATCTATGCAGCAAAGTGGAATCTGGGTTGCAGTTGGACCATGATGTGATTACGGGTCTCGTCTCATATTGTGAACTTGCTGCTCCTGAGGATGCCAATGAGTATTTGACTAACATTGTTGGCCATGATTTAAGCCAGGGTATTATAGCTGAATACCTGCAAAGGAGGTCCTCTAAGAGAAA
TCTTTATTTAGACATGATCCCCAAAGAGGATATGCAAGCCTATATGAAACCCCCAGCAGAGGAATTGTGGTCTGCTGGAAACAGAAGAGCAGCAAAACGCTCTAATGAAAGGAACTCTGTAGCTGTTCAGCAAGAAGCAAAAGCCCTGACAGAAATTTCAGAAGCAAAGGATGTTGCAAAGGGGAAAGCTAATGCTACCA
GGAAAAAGAAAGGGGCTAAAGTGATTTCACTTGCAGAAGCTGCAAAAGGCTCAATTGTCCTCCAAAGTGGTCAACCTTGTGATTGCCAAGCTCGTAGGCATAGACTTATAGCAAATTGTCTATCCTGTGGCAAGATCATTTGTGAACAGGCAGGAGAAGGTCCTTGCAACTTTTGTGGAGCACTTGTGTTACGTGAAGGT
TCTAATTATGCAGGGCTTGGTGACGCTGCATTCCCTGTATCTGAAGGAGAAGCTGCAGCAGAGGCATTTAAGAATAGGCTTGTTGAGTATGACCGTAATGCGGCTGAACGGACAGTAGTGATTGATGATCAGAGTGATTATTATGAAGTTGAGGGAAATGCATGGATTTCAGAAGAGGAAAAGCAACTGTTGCGAAAGAA
ACAGGAAGAAATTGCAGAAGCAGATCGAGCTCGTCGAAATAAAGTTGTTGTCACTTTTGATTTAGTTGGTCGTAAGgtcatcatcttctgcagagacctttgaatctatgaacactattcagatgagagacaatgcatgacagagcacctgagtgggcctaatggttaagaacatgtgttatctcgtggaggtcacaggt
tcaaaaccggcggggggtagggttgctcattggcccattgtgacaaggctcgaagggtaggcgacccctgggatagaggctcaccccagtgggcttcgggacgtctcggcccctgctgagtcacaagttactggtatatctggcttgcgggctgttggatatacccttgggaggttgctgttcccatggttaagaaaaaa
gagagacaatgcatgacttttgcaattcaaatgttgttagctataaatcatagcaaataacttcgaatgaagcttatataaaaaaattctggtttcctacatttacgctgtattgagattgcaatgctgtcaatctcttcacatgcatcattaagtgaaatagcctatatttgaacagtttttcatgtattcatattgca
ttgtttcagGTTGTGATGACTGAGAAAGAAGCAGCAGAGATGGAGACACAAAGCAGTATACTGCGGCCCACTTTTAATTCTCAAGATAAAACTTGCAATCGTATAAAGGCAAATCCAAATATAAGAGATCTGCCAGTTTTTGTAGATACTCATGAATCAGGTCGTGCAAAGACATCACAACCTTGTAAGAATGGAAAAAT
GCCAGTCAGATCCCAGACTGGTGTGTGCTTTGAGATAAGTGGAAGAGTGCAGCATGATGATCCAGTGGTGGAGGCACTTTCCTCAGGTGGATTTAAGGCAGAAACACCTGTTGAAGGTCCATGGAAAGCTCCAAAGGTCAATATGCAATTTTGTGACCCTGAAGGAGAAAATAATGAATGCTTAAGTTGATGCTTGACAC
TATTCTAGAGGAAGTGTAGGAGGTTTAAATTAAAAAATTCTTGTAATTGCCACATTACAATTAAAAAAAATGTGTGCAAAGCCATTGATATTCCGATGGATCAATGATTTAATTATGCAAAGTACAAAAATAAAATCCCTTAATGTTTATTCAATTTAGTTACACGAGGTAAGGTTCACACTGTAAAAGCTTGAATATTA
TACCCACAAATTGACTGAACTTTGGTTGAGATTACCCACAAATTGACTGAACTTTGGTTGAGATAGTTTTTCTCATCAAAGATCTTTGTTATTAAAGAATGTCCAGGACTCTCTCCACAAAGAACACTACAAAATGGTTTGCAAGATTTAACCCTGTCGTTGGACCTGAGATGTATTCAAACAACAAAGATGTTGGAATC
CGATGCGTGTTGCAAGCTCCATTCTCCAACCTTGTTGGATGTTGGCAAATTGAAATCAGTGACTATTGTTATATCTCATGCCCCT
Intron 2 ATCTTCAGGA ... CAAAAAAAAC
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 100 | 0 | 2 | 1 |
| A2 | 55.56 | 4 | 5 | 2 |
| A3 | 0 | 4 | 0 | 0 |
| A4 | -1 | 0 | 0 | 0 |
| A5 | -1 | 0 | 0 | 0 |
| A6 | -1 | 0 | 0 | 0 |
| A7 | 47.06 | 9 | 8 | 1 |
| A8 | 51.79 | 54 | 58 | 18 |
| A9 | 52.94 | 8 | 9 | 1 |
| A10 | 56.52 | 10 | 13 | 2 |
>TRINITY_DN46607_c3_g1_i14 from sample A8 / Example spliced isoformTCCAAGAAAAACATAAAAAACATATATTTTTTATCTTTATAGAAAAGAAAAAAATTATATATTTCAAAGGTTTTCTAAGAAAAACATAAAAAACATCTTCATGAAAAAGGTGTTCCAAGAAAAACAAAAAAAACATCTTCATGAAAAAGGTGTTCCAAGAAAAACAAAAAAAACATCTTCATGAAAAAGGTGTTCCAAGA
AAAACATAAAAAACATATATTTTTTATCTTTATAGAAAAGAAAAAAATTATATATTTCAAAGGTTTTCCAAGAAAAACATAAAAAACATGAAAATGAAAAAGGTGTTCCAAGAAAAACAAAAAAAACATCTTCATGAAAAAGGTGTTCCAAGAAAAACATAAAAAACATCTTCAGGGAAAAGGTGTTCCAAAAAAAACAT
AAAAAAAACATTTTCAAAAAAAATGATCAAATAATTAAGAAAAAAAATATTGTAAACATCAATGCAAACAGATTAATGATATCTTATTTGTTTATCCATTAAAAAACAAAAAAAACATCTTCATGAAAAAGGTGTTCCAAGAAAAACATAAAAAACATCTTCAGGAAAAAGGTGTTAAAAAAAAACATTTTCAAGAAAAA
TGATCAAATATTTAAGAAAAAAATAAAAACATAAAAAACATCTTGGAAAAAGGTGTTCCAAAAAAACATAAAAAA
>TRINITY_DN46607_c3_g1_i9 from sample A8 / Example unspliced isoform:TCCAAGAAAAACATAAAAAACATATATTTTTTATCTTTATAGAAAAGAAAAAAATTATATATTTCAAAGGTTTTCTAAGAAAAACATAAAAAACATCTTCATGAAAAAGGTGTTCCAAGAAAAACAAAAAAAACATCTTCATGAAAAAGGTGTTCCAAGAAAAACAAAAAAAACATCTTCATGAAAAAGGTGTTCCAAGA
AAAACATAAAAAACATATATTTTTTATCTTTATAGAAAAGAAAAAAATTATATATTTCAAAGGTTTTCCAAGAAAAACATAAAAAACATGAAAATGAAAAAGGTGTTCCAAGAAAAACAAAAAAAACATCTTCATGAAAAAGGTGTTCCAAGAAAAACATAAAAAACatcttcaggaaaaaggtgttaaaaaaaaacatt
ttcaagaaaaatgatcaaatatttaagaaaaaaataaaaacataaaaaacatcttggaaaaaggtgttccaaaaaaacataaaaaacatcttcaggaaaaaggtgttacaaaaaaaacATCTTCAGGAAAAAGGTGTTACAAAAAAAACATAAAAAAACATTTTCAAGAAAAATGATCAAATATTTAAGAAAAAAATAAA
AACATAAAAAACATCTTGGAAAAAGGTGTTCCAAAAAAACATAAAAAAACATTTTCAAGAAAAATGATCAAATAATTAAGAAAAAAAATAATATTGTAAACATCAATGCAAACAGATTAATGATATCTTATTTGTTTATCCATTAAAAAACAAAAAAAACATCTTCATGAAAAAGGTGTTCCAAGAAAAACATAAAAAAC
ATCTTCAGGAAAAAGGTGTTAAAAAAAAACATTTTCAAGAAAAATGATCAAATATTTAAGAAAAAAATAAAAACATAAAAAACATCTTGGAAAAAGGTGTTCCAAAAAAACATAAAAAATTGAAGCTAAGCTGTGTACAAGTTGAAAGTTGTGCAATAACCAAAAAGGCAATAAATAGTTTTTTTTATCTCCATTCAATT
GTATTTTTCACATTAAGTAAATGTACCCAAGTAGCTACCACCCAAATTAGCCTTTTTGCCTGAAATGGACTCGAATAAATAAAATTCAATTCTCAACCAATAAACCTTTTATTGAGAAGTATTTTCCCAAGCACTTAATAATATTATGATAAATAATATAGCGCAGCATCCTATCTCAACACCTTTATAGAGAAATTCAC
TAATGTGAAGATCACAAGGTGATCATCATCCAACTCTTCCAACTGTCAAAAAGCCATGCAGTGATTTAACGATCTGGAAAAGGAGGCTATCAAGCTCTTTAAAATCTTCTAAGCAATAATATGATTAAGAGTCCTACCATAAACATATATGGTACATACAGGCAAGAGTTGCAAACTAGAAGCTACTCTGTTAAGTGCAC
CACTACAGTTTAAGATTAGTAATATGATCAAGTTTGTGCTTGTGCATTGTTTACTTGCAGTGAAAACAAGTACAGGGAATGGCAAAATGAACGTAGAATGGAAGGCCCAACTTTTCTAGGAGACAAAAACTGCTGCGGTGAAAATTACCTGCCCAAGTCAGTAGGAAACATATATTGGTAAACACAAGGAAATGAATATA
TACCAGTCAAGCACCCTTTCATCTGAAACCAGTAGATAAATCACATACATGATCAAATACTAACTTCAGAGATTGAACACACAAGTAATACTGGGCGACTACACATTAGGCTTTCAAAATGTGCCCAGCATAATATTGTCAAGCTTACATTGCATTTTACAATTATTTTTTGTTAAGGACTTTTCATGGGAATCACTAAA
TTTTCTTCTTGGAATGGCCTGGAGCTGTATCAACTTTGGGTACAGACAGCAATCAACTGGGAAACATACCTTAAATAAATTTGTCCCTAAAATGGATCTGGGATGGGTATCTAAAATGGATCTCTGAGGAGGTCACAGGTTCAAAACCGGCGAGCGGTAGGGTTGCTCATTGGCCCGCTGTGACAAGGCTTGAAGGGTAG
GCGACCCCTGGGATAGAGGCTCTCCCCTAGGATAAAGGGTCTCGGGACGTCTCGGCCCCTGCTGAGTCACAAGTTTCTGGTATATCTGGCTTGCGGGCTGTTGGATATACCCTTGGGAGGTTGCTGTTCCCATGGTTAAAAAAAGAGAATTACGGCCTCCACCAACAGATGGATCTAGGGTTTCGGACTGAAGGTATAGC
AGAAGTAAGGGAGGTCTGAATCCACAGCTAGGACA
Intron 3 GTATATCCGA ... ATACTGACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 20.07 | 31 | 6 | 10 |
| A2 | 17.44 | 37 | 6 | 10 |
| A3 | 15.97 | 20 | 2 | 6 |
| A4 | 25.93 | 16 | 5 | 6.3 |
| A5 | 18.58 | 13 | 3 | 3 |
| A6 | 19.55 | 43 | 10 | 11.3 |
| A7 | 19.12 | 98.7 | 18 | 29.3 |
| A8 | 18.56 | 80 | 21 | 15.7 |
| A9 | 15.92 | 80.7 | 8 | 23 |
| A10 | 13.9 | 73 | 9 | 15 |
>TRINITY_DN116199_c0_g3_i7 from sample A2 / Example spliced isoformTCTATTTAAACTTCACTCTTTTTCATGCTTATTTCTAAACTTTTCATGGACATGTGGTTTGTAGAACATTGTTGGCCATGATTTAAGCCAGGGTATTATAGCTGAATACCTGCAAAGGAGGTCCTCTAAGAGAAATCTTTATTTAGACATGATCCCCAAAGAGGATATGCAAGCCTATATGAAACCCCCAGCAGAGGAAT
TGTGGTCTGCTGGAAACAGAAGAGCAGCAAAACGCTCTAATGAAAGGAACTCTGTAGCTGTTCAGCAAGAAGCAAAAGCTCTGACAGAAATTTCAGAAGCAAAGGATGTTGCAAAGGGGAAAGCTAATGCTACCAGGAAAAAGAAAGGGGCTAAAGTGATTTCACTTGCAGAAGCTGCAAAAGGCTCAATTGTCCTCCAA
AGTGGTCAACCTTGTGATTGCCAAGCTCGTAGGCATAGACTTATAGCAAATTGTCTATCCTGTGGCAAGATCATTTGTGAACAGGCAGGAGAAGGTCCTTGCAACTTTTGTGGAGCACTTGTGTTACGTGAAGGTTCTAATTATGCAGGGCTTGGTGACGCTGCATTCCCTGTATCTGAAGGAGAAGCTGCAGCAGAGGC
ATTTAAGAATAGGCTTGTTGAGTATGACCGTAATGCGGCTGAACGGACAGTAGTGATTGATGATCAGAGTGATTATTATGAAGTTGAGGGAAATGCATGGATTTCAGAAGAGGAAAAGCAACTGTTGCGAAAGAAACAGGAAGAAATTGCAGAAGCAGATCGAGCTCGTCGAAATAAAGTTGTTGTCACATTTGATTTAG
TTGGTCGTAAGGTTGTGATGACTGAGAAAGAAGCAGCAGAGATGGAGACACAAAGCAGTATACTGCGGCCCACTTTTAATTCTCAAGATAAAACTTGCAATCGTATAAAGGCAAATCCAAATATAAGAGATCTGCCAGTTTTTGTAGATACTCATGAATCAGGTCGTGCAAAGACATCACAACCTTGTAAGAATGGAAAA
ATGCCAGTCAGATCCCAGACTGGTGTGTGCTTTGAGATAAGTGGAAGAGTGCAGCATGATGATCCAGTGGTGGAGGCACTTTCCTCAGGTGGATTTAAGGCAGAAACACCTGTTGAAGGTCCATGGAAAGCTCCAAAGGTCAATATGCAATTTTGTGACCCTGAAGGAGAAAATAATGAATGCTTAAGTTGATGCTTGAC
ACTATTCTAGAGGAAGTGTAGGAGGTTTAAATTAAAAAATTCTTGTAATTGCCACATTACAATTAAAAAAAATGTGTGCAAAGCCATTGATATTCCGATGGATCAATGATTTAATTATGCAAAGTACAAAAATAAAATCCCTTAATGTTTATTCAATTTAGTTACACGAGGTAAGGTTCACACTGTAAAAGCTTGAATAT
TATACCCACAAATTGACTGAACTTTGGTTGAGATTACCCACAAATTGACTGAACTTTGGTTGAGATAGTTTTTCTCATCAAAGATCTTTGTTATTAAAGAATGTCCAGGACTCTCTCCACAAAGAACACTACAAAATGGTTTGCAAGATTTAACCCTGTTGTTGGACCTGAGATGTATTCGAACAACAAAGATGTTGGAA
TCCGATGTGTGTTGCAAGCTCCATTCTCCAACCTTGTTGGATGTTGGCAAATTGAAATCAGTGACTATTGTTATATCTCATGCCCCTAATTTCTTCATTTATTTGCTCTTATTTTCTTCATTTATTTTGTTGTAATTTGATAAAGAAGTGC
>TRINITY_DN116199_c0_g3_i9 from sample A2 / Example unspliced isoform:ATCCATTCGACTCGACTACCATTTTTTCCCTTCCAAGGGCGGCCGCCATAACCTGCACAAATTGGGAGTCAGTGCTGAATTCAACAGTTAAATTAAACTAGCACATTCCAGGAATTGCTCCGTGGATTTGAGTATATAGGTCCGCCCACTTTTGGGCGAAAATGGTCTCTACAGAATCAGGAAAGTGGTTGCAGGATGCC
CTGATCGATCTATGCAGCAAAGTGGAATCTGGGTTGCAGTTGGACCATGATGTGATTACGGGTCTCGTCTCATATTGTGAACTTGCTGCTCCTGAGGATGCCAATGAGTATTTGACTAACATTGTTGGCCATGATTTAAGCCAGGGTATTATAGCTGAATACCTGCAAAGGAGGTCCTCTAAGAGAAATCTTTATTTAGA
CATGATCCCCAAAGAGGATATGCAAGCCTATATGAAACCCCCAGCAGAGGAATTGTGGTCTGCTGGAAACAGAAGAGCAGCAAAACGCTCTAATGAAAGGAACTCTGTAGCTGTTCAGCAAGAAGCAAAAGCTCTGACAGAAATTTCAGAAGCAAAGGATGTTGCAAAGGGGAAAGCTAATGCTACCAGGAAAAAGAAAG
GGGCTAAAGTGATTTCACTTGCAGAAGCTGCAAAAGGCTCAATTGTCCTCCAAAGTGGTCAACCTTGTGATTGCCAAGCTCGTAGGCATAGACTTATAGCAAATTGTCTATCCTGTGGCAAGATCATTTGTGAACAGGCAGGAGAAGGTCCTTGCAACTTTTGTGGAGCACTTGTGTTACGTGAAGGTTCTAATTATGCA
GGGCTTGGTGACGCTGCATTCCCTGTATCTGAAGGAGAAGCTGCAGCAGAGGCATTTAAGAATAGGCTTGTTGAGTATGACCGTAATGCGGCTGAACGGACAGTAGTGATTGATGATCAGAGTGATTATTATGAAGTTGAGGGAAATGCATGGATTTCAGAAGAGgtatatccgagttagcaaggcagtttgaaatttaa
ctaggttagttaattttataatcagttttgactgacattgttgttgtgtaaatactgacagGAAAAGCAACTGTTGCGAAAGAAACAGGAAGAAATTGCAGAAGCAGATCGAGCTCGTCGAAATAAAGTTGTTGTCACATTTGATTTAGTTGGTCGTAAGGTTGTGATGACTGAGAAAGAAGCAGCAGAGATGGAGACAC
AAAGCAGTATACTGCGGCCCACTTTTAATTCTCAAGATAAAACTTGCAATCGTATAAAGGCAAATCCAAATATAAGAGATCTGCCAGTTTTTGTAGATACTCATGAATCAGGTCGTGCAAAGACATCACAACCTTGTAAGAATGGAAAAATGCCAGTCAGATCCCAGACTGGTGTGTGCTTTGAGATAAGTGGAAGAGTG
CAGCATGATGATCCAGTGGTGGAGGCACTTTCCTCAGGTGGATTTAAGGCAGAAACACCTGTTGAAGGTCCATGGAAAGCTCCAAAGGTCAATATGCAATTTTGTGACCCTGAAGGAGAAAATAATGAATGCTTAAGTTGATGCTTGACACTATTCTAGAGGAAGTGTAGGAGGTTTAAATTAAAAAATTCTTGTAATTG
CCACATTACAATTAAAAAAAATGTGTGCAAAGCCATTGATATTCCGATGGATCAATGATTTAATTATGCAAAGTACAAAAATAAAATCCCTTAATGTTTATTCAATTTAGTTACACGAGGTAAGGTTCACACTGTAAAAGCTTGAATATTATACCCACAAATTGACTGAACTTT
Intron 4 GTATAGACCA ... GACATGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 25.93 | 20 | 7 | 0 |
| A2 | 50 | 9 | 9 | 1 |
| A3 | 87.5 | 1 | 7 | 6 |
| A4 | 30 | 7 | 3 | 4 |
| A5 | 0 | 3 | 0 | 0 |
| A6 | 23.26 | 33 | 10 | 0 |
| A7 | 21.62 | 29 | 8 | 0 |
| A8 | 16.07 | 47 | 9 | 0 |
| A9 | 32 | 34 | 16 | 0 |
| A10 | 10.53 | 17 | 2 | 0 |
>TRINITY_DN98544_c1_g1_i3 from sample A4 / Example spliced isoformGTCAAAAGCTAAACAATAACATAAGTTTAAATGATAAAAAGCGCAGAGAGATCATAGACACTGAAAATCGACTTAGTGTACAAGTCCGAGCAAAAGCCAATGAAATTGAAGAGGTAAACAAGCGAGAAGAATCTCGACAAGAGCGGATTGCAAGAGCCAAGGAAGAACTTGCAGCTGCTGAAGCTGATCTTGCAAAGTTG
CCTGTCTATGAGCCTCCAAAAGAGGAACTTGAAGGACTTGGAGCTCAAATAAGGGAGCTGGAGATTTCTGCTGGTGAAAAGCGGTCCGTCAAGAAAGAAAAGGGCTATCTGCTGGAGCAGGAGAGGTCAACACTGAATCGGTGTATAAACAGGATGAAAGATATAGAAAGTACAAATATTCGACTTTTGCAGGCATTGAA
AGACTCTGGGGCTCGCCACATATTTGAAGCTGTTGAATGGGTTAAAAACAATAGCAGTAATTTCAAGCAGAAAGTTTATGGTCCAGTTCTTGTTGAGGTCAATGTTTCTAACAAAGGTCATGCGGCCTACTTGGAAGGTCATGTCCCAAATTATATTTGGAAGTCATTTATCACTCAGGATTCATATGATCGAGACCTGC
TTGTTAAAAACATGAAACAATTTGATATTCCTATTCTAAACTATACTGGAAATAGAGAAATGCGAAGAGGACCTACACCAGTATCAGATGAGATGCGAAGCCTGGGGATCACATCAAGGCTTGATGAAGTATTTGAAGCACCATCTGCTGTGAAGGAAGTTCTGATCAGTCAGTTTGCACTAGACCATTCGTTCATTGGC
TCAGAGGTGACAAATCGTAGAGCGGATGAGGCAAACAAGTTAGGAGTGATGGATCTATGGACTCCTGAAAATCATTACCGTTGGTCTATTTCTCGGTATGGAGGCCATGTGTCAGCAAGTGTAAATCCAGTACAGGGATCACGCCTTTTTGCTTCTAATGTGGACGTGAGAGAAGTCAATGAATTGAATCACAGGAGGAG
TGAGGCTGAAGAGCATATTACAAAACTTGACGAGGAACTTAAGAGAATATCAAGTGAACAAAGGCATCTGGAGGATGAAGCGGCAAAGCTACACAGGAAGCGGGAGGAAATCGTCAATACTGTTAGATTAGAGCGAAGAAAGCAACAAGAGATGGCCAATCGGATAGATCAACGCAGGAGGAAGCTTGAGTCAATGGAGA
AAGAAGAAGACATGGAAACAACTATATCTAAGCTTACTGATCTAATGATCCAACTAAATTTGCAGCGCTTCAGAAAGGCAATTGAAATGAAGGATTTGTTGATTGAAGTTTTGTCGCTCAAGCGACGCTATGCAGAAAAACAACTTACAGCAGTTGAGCTTGATATGCAGATAAGGGATATGGAAAGGGAGCTCAAAGAA
CCTGAAAGACGGGGTATCATAGCACAACAAGAATTTGACCGTTGTAAAGATGATGTGGAGCATTGCAGAAGGCAGCTTCAAATGGTTAAGGATGCTGCAGAATCTGTTGCCAAGCTCAATCCTGAATTGCAACGGGCTTTCCTTGAGATGCCTGATACAATCGAAGAACTTGAAGGTGCAATCCAAGATTTTACTGCACA
GGCAAACGCTGTTCTTTTTCTTAATCACAATGTGCTTGAAGAGTATGAGCGCCGATGTGAACAGATCCACAACCTGGAGTTGAAAGTAGAAGAAAACAGAGCAGTTCTCAATAGGAATATGGCGGAAATAAATAGGCTTAAGGAAACCTGGCTTCCAACATTGAGGAGTCTTGTTGTCAGGATCAATGAAACTTTCAGCC
ACAACTTTCAAGAGATGGCTGTTGCTGGAGAAGTAACACTTGATGAGCGTGATATGGATTTCGACAAGTATGGTATTCGAATAAAAGTTAAGTTCAGGCAAACTGGACAGTTGCAGGTGTTGAGTGCCCATCATCAATCTGGAGGGGAACGCTCAGTGTCAACAATATTGTATCTTGTTTCATTACAGGACCTTACACAC
TGTCCATTCCGTGTGGTAGATGAAATTAACCAAGGAATGGATCCTATAAATGAGAGGAACATGTTTCAGCAACTTGTAAGGGCTGCAAGTCAACCCAACACACCACAGTGTTTTTTATTGACGCCAAAATTACTTCCAGATCTAGATTATACAGATGCTTGCAGCATCTTGAATATTATGAATGGACCTTGGATCGAGAA
GACATCAAAAGTTTGGAGTAATGGTGCGAATTGGGGAACAGTAACTGAAATGCTGTCACAACATTCAACATGAATGTATTTTGTATAACAAGAAATGGTTCTCATTGGTTCCTTGTCATCCTTGTATCTCTGCCCTTGTGGAATATGTACTAGTTGATGCTTTTTTTGTTTAAACTTTGTGTTTAGCACAGACTACACCT
TCC
>TRINITY_DN98544_c1_g1_i8 from sample A4 / Example unspliced isoform:GTCAAAAGCTAAACAATAACATAAGTTTAAATGATAAAAAGCGCAGAGAGATCATAGACACTGAAAATCGACTTAGTGTACAAGTCCGAGCAAAAGCCAATGAAATTGAAGAGGTAAACAAGCGAGAAGAATCTCGACAAGAGCGGATTGCAAGAGCCAAGGAAGAACTTGCAGCTGCTGAAGCTGATCTTGCAAAGTTG
CCTGTCTATGAGCCTCCAAAAGAGGAACTTGAAGGACTTGGAGCTCAAATAAGGGAGCTGGAGATTTCTGCTGGTGAAAAGCGGTCCGTCAAGAAAGAAAAGGGCTATCTGCTGGAGCAGGAGAGGTCAACACTGAATCGGTGTATAAACAGGATGAAAGATATAGAAAGTACAAATATTCGACTTTTGCAGGCATTGAA
AGACTCTGGGGCTCGCCACATATTTGAAGCTGTTGAATGGGTTAAAAACAATAGCAGTAATTTCAAGCAGAAAGTTTATGGTCCAGTTCTTGTTGAGGTCAATGTTTCTAACAAAGGTCATGCGGCCTACTTGGAAGGTCATGTCCCAAATTATATTTGGAAGTCATTTATCACTCAGGATTCATATGATCGAGACCTGC
TTGTTAAAAACATGAAACAATTTGATATTCCTATTCTAAACTATACTGGAAATAGAGAAATGCGAAGAGGACCTACACCAGTATCAGATGAGATGCGAAGCCTGGGGATCACATCAAGGCTTGATGAAGTATTTGAAGCACCATCTGCTGTGAAGGAAGTTCTGATCAGTCAGTTTGCACTAGACCATTCGTTCATTGGC
TCAGAGGTGACAAATCGTAGAGCGGATGAGGCAAACAAGTTAGGAGTGATGGATCTATGGACTCCTGAAAATCATTACCGTTGGTCTATTTCTCGGTATGGAGGCCATGTGTCAGCAAGTGTAAATCCAGTACAGGGATCACGCCTTTTTGCTTCTAATGTGGACGTGAGAGAAGTCAATGAATTGAATCACAGGAGGAG
TGAGGCTGAAGAGCATATTACAAAACTTGACGAGGAACTTAAGAGAATATCAAGTGAACAAAGGCATCTGGAGGATGAAGCGGCAAAGCTACACAGGAAGCGGGAGGAAATCGTCAATACTGTTAGATTAGAGCGAAGAAAGCAACAAGAGATGGCCAATCGGATAGATCAACGCAGGAGGAAGCTTGAGTCAATGGAGA
AAGAAGAAGACATGGAAACAACTATATCTAAGCTTACTGATCTAATGATCCAACTAAATTTGCAGCGCTTCAGAAAGGCAATTGAAATGAAGGATTTGTTGATTGAAGTTTTGTCGCTCAAGCGACGCTATGCAGAAAAACAACTTACAGCAGTTGAGCTTGATATGCAGATAAGGGATATGGAAAGGGAGCTCAAAGAA
CCTGAAAGACGGGGTATCATAGCACAACAAGAATTTGACCGTTGTAAAGATGATGTGGAGCATTGCAGAAGGCAGCTTCAAATGGTTAAGGATGCTGCAGAATCTGTTGCCAAGCTCAATCCTGAATTGCAACGGGCTTTCCTTGAGATGCCTGATACAATCGAAGAACTTGAAGGTGCAATCCAAGATTTTACTGCACA
GGCAAACGCTGTTCTTTTTCTTAATCACAATGTGCTTGAAGAGTATGAGCGCCGATGTGAACAGATCCACAACCTGGAGTTGAAAGTAGAAGAAAACAGAGCAGTTCTCAATAGGAATATGGCGGAAATAAATAGGCTTAAGGAAACCTGGCTTCCAACATTGAGGAGTCTTGTTGTCAGGATCAATGAAACTTTCAGCC
ACAACTTTCAAGAGATGGCTGTTGCTGGAGAAGTAACACTTGATGAGCGTGATATGGATTTCGACAAGTATGGTATTCGAATAAAAGTTAAGTTCAGGCAAACTGGACAGTTGCAGGTGTTGAGTGCCCATCATCAATCTGGAGGGGAACGCTCAGTGTCAACAATATTGTATCTTGTTTCATTACAGGACCTTACACAC
TGTCCATTCCGTGTGGTAGATGAAATTAACCAAGGAATGGATCCTATAAATGAGAGGAACATGTTTCAGCAACTTGTAAGGGCTGCAAGTCAACCCAACACACCACAGTGTTTTTTATTGACGCCAAAATTACTTCCAGATCTAGATTATACAGATGCTTGCAGCATCTTGAATATTATGAATGGACCTTGGATCGAGAA
GACATCAAAAGgtatagaccatagtttcaatgtggtcaggattacatggagctatttttcttgcttggttgctctctcttgctcctaatatatattcttggtcctttctctgcagagagtgcaagaaaaaggcttagacctgcttctttttatttttattttttgctgacatgccagtggagcatgctttatggtttggg
aaacatatcattgtgctaatgtttggctgactgcttttgttctcttgacatggcagTTTGGAGTAATGGTGCA