NA ----> NA
Intron 1 GTTGGTAGCT ... CCTATTTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 22.41 | 734 | 0 | 212 |
| A2 | 26.18 | 713.3 | 1 | 253 |
| A3 | 26.97 | 850.3 | 1 | 314 |
| A4 | 25.55 | 396.3 | 9 | 136 |
| A5 | 28.74 | 233 | 0 | 94 |
| A6 | 28.88 | 4560 | 1 | 1852 |
| A7 | 30.36 | 5881.7 | 4 | 2564 |
| A8 | 28.5 | 6208.7 | 0 | 2475 |
| A9 | 27.99 | 5357.3 | 2 | 2082 |
| A10 | 28.74 | 4763.3 | 1 | 1921 |
>TRINITY_DN98784_c0_g1_i6 from sample A4 / Example spliced isoformATTTACTTTTTTTTTAACCTCAGAAAGTCCACATCAACATATTTAAAGAGTTAAGCTGCAGGTTTCACAGGTTAGTTGGGTTAGTACGGTGTCTATTCCGAGTTCATTTCAATTCAAGCTTTAGGTCATTTTATCAAATATGATTTCATAACTGCCCCCTGCAGAGAAGGATTCCTGATCTTCATCAAAATACAATTATT
GGATCAACTGATATAACTGATACATGGCAGCCAATAGAGGAAGGACTTCTTCCGTTGGAAACCACCCGACATGTGTCAATGATTACAATAACATTGTCCACCAAGGAACTGGACACAAGCTCCACAGGATATCAGCCACCATTGCCAGCAGATCAAGTAAAACCATGGACTGATTTAGAATATGATGGAGAGGGTTCTCC
TGGAGGTGGAAGAGGCAGGGGGCGTGGTCCTCGGGGAAGAGGTAGAGCAAGAGGTAATGGAAATTTGGGTGGTGAATACTATGGTGATGGAAATTGGGAAAGGGGCCGTGGTTCAGGCCGAGGCCGAGGCCGAGGCCGTGGAAGGGGTCGTGGCTATCGTGGCCGTGGGAGAGGTTATGGTGTTTTTGAAGCCCAGCAAG
ATGCAGGGCGTGGTCGTGGAAGAGGAAGAGGGCGTGATTTTCGATCCGATGAACAGATACATGAAATGCCTGTGGTAGCCTGATTGTGTGGTACAATTAGCCTTAGAACATATGGATGCCTGCTCTTGGAAGCATAGAACTTGAGTGTATGAATTTGTGTGTCTTGGGTAACTTTTAAGAGCTATCCTGTTGTAGGTGGC
TGTTTTTTTGTAGGTAGGCTCTTGTGAAAGTCTCATTCATCCCCAAGTATATTTTTTTTTTTGTATTTACAGAAAAAAATGTACAATTTCCATTCTAATAATTGAGCAGTACATTCTTTTATTCAAACAGATTATCAAGCCCATCTCAGATTTCTATTTGTTTCAGAAAATATAGAACTCATGTCAGCACAAGATAAAAT
AGGTGCTTGTATAATAATTAGTAGGGAATGTTGTCTGCATCTTGGTTTTGGAGAGTAGAACATTTGTGATAAACTTTACATATTTTATAAAACATTG
>TRINITY_DN98784_c0_g1_i4 from sample A4 / Example unspliced isoform:GGGGAAGAGGTAGAGCAAGAGgttggtagctattttgaaaattattgcttttgactgaaattgtaaagcagattcttattattttagctacaagtccttgttgaatatcatgacaagcagattcttattattttagctacaagtccttgttgaatatcatgccaaattgtatccctattttagGTAATGGAAATTTGGGT
GGTGAATACTATGGTGATGGAAATTGGGAAAGGGGCCGTGGTTCAGGCCGAGGCCGAGGCCGAGGCCGTGGAAGGGGTCGTGGCTATCGTGGCCGTGGGAGAGGTTATGGTGTTTTTGAAGCCCAGCAAGATGCAGGTGGGTACAAAGTTTTTTGCACATAAGAATGCCTATATAAGGCTGTGATATTAATCTTTTTGTG
CCTAGATGTTGCTGGG
Intron 2 GTTAGATCAG ... TTTTTGCAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 1.83 | 268 | 5 | 2 |
| A2 | 2.97 | 229 | 7 | 1 |
| A3 | 2.52 | 271 | 7 | 0 |
| A4 | 0.95 | 209 | 2 | 1 |
| A5 | 2.78 | 140 | 4 | 4 |
| A6 | 0 | 775 | 0 | 1 |
| A7 | 0.76 | 1298 | 10 | 2 |
| A8 | 0.22 | 900 | 2 | 0 |
| A9 | 0.35 | 1130 | 4 | 1 |
| A10 | 0 | 1119 | 0 | 1 |
>TRINITY_DN109851_c0_g1_i5 from sample A2 / Example spliced isoformGCTCGGACATCTGAAGTATCCGGAGTAAGCAAGGTAATCATATGATGATTTAAATAACTGCAACAACATGATAATCTCGTGATTACCAGTATTTAAGTCTCTGATGATCCCTGGCTATTTCACGTTTTATTGTAAATTCTTATTTCTAGGGTATTGTTGTGTGTTGCCTGTAGGGTTTTTAAGTTTTTGAAAGAAGCTCG
AGGATTAAATGCCGTAGGGCATTATACTTTTGCTGATCTATCAATACTTGATGAACGACCAATAAGATGAGAGCTGAATAGAAAACAGCGAGAGAGAGCTCGTAGAGCGAATAGCGATAAATTTAAAGGGAAGAAGAGCAGTGCAGAGGTTTTCAAAGGCAAAATATCCAACATACCAGAGCACCTGACTCGCCTCTTCG
ACATTTCAAGGGCCTCTTTGCATCACGGTATTTAGTTTTTGACCGACTCGGCGATTTTTTTACGGCCGACCGTTTATTTTGCAGCCCGTGATGTTTCCAAACTAAATGCTCGGCTTCTAGATGGATCGATACCAGAGAGTCGAGAGGCCACGACCAGAGACTCCAATAAGTGAGAATGAAATCCGTATTACTACACAAGG
GAGAATGCGAAACTACATAACCTATGCAACGACATTGCTTCAGGATAAAGGATCATCTGAAATAGTTCTGAAAGCTATGGGGAGAGCAATCAACAAGACTGTTACTATTGCTGAGTTAATCAAGAGAAGGATTCCTGATCTTCATCAAAATACAATTATTGGATCAACTGATATAACTGATACATGGCAGCCAATAGAGG
AAGGACTTCTTCCGTTGGAAACCACCCGACATGTGTCCATGATTACAATAACATTGTCCACCAAGGAACTGGACACAAGCTCCACAGGATATCAGCCACCATTGCCAGCAGATCAAGTAAAACCATGGACTGATTTAGAATATGATGGAGAGGGTTCTCCTGGAGGTGGAAGAGGCAGGGGGCGTGGTCCTCGGGGAAGA
GGTAGAGCAAGAGGTAATGGAAATTTGGGTGGTGAATACTATGGTGATGGAAATTGGGAAAGGGGCCGTGGTTCAGGCCGAGGCCGAGGCCGAGGCCGTGGAAGGGGTCGTGGCTATCGTGGCCGTGGGAGAGGTTATGGTGTTTTTGAAGCCCAGCAAGATGCAGGGCGTGGTCGTGGAAGAGGAAGAGGGCGTGATTT
TCGATCCGATGAACAGATACATGAAATGCCTGTGGTAGCCTGATTGTGTGGTACAATTAGCCTTAGAACATATGGATGCCTGCTCTTGGAAGCATAGAACTTGAGTGTATGAATTTGTGTGTCTTGGGTAACTTTTAAGAGCTATCCTGTTGTAGGTGGCTGTTTTTTTGTAGGTAGGCTCTTGTGAAAGTCTCATTCAT
CCCCAAGTATAATTTTTTTTTTGTATTTACAGAAAAAAATGTACAATTTCCATTCTAATAATTGAGCAGTACATTCTTTTATTCAAACAGATTATCAAGCCCATCTCAGATTTCTATTTGTTTCAGAGAATATAGAACTCATGTCAGCACAAGATAAAATAGGTGCTTGTATAATAATTAGTAGGGAATGTTGTCTGCAT
CTTGGTTTTGGAGAGTAGAACATTTGTGATAAACTTTACATATTTTATAAAACATTGATCACTACATTTCTTTTTAAGAATGGTTTAATATGGTATTAAAATATGCTGTAGTTGAGCTGAACAGCATGGAAATACAAATTGAGAGCATGCCTAGCTTCAAAAAGGATATGCTCTGTAATGACTGCAAAGTACAACCTATA
AACATTTGCAATACTGCTTACAAAACTTGACATAGAGCAGCTGGTAGTATAGATTCTAAAACAGACACCTAGGATTAAAACATATTTGCAATACATTGACAGTGACATGATTAAGGGTAGGCACACTTTCACATTGTGTCATCTTGGGCGTG
>TRINITY_DN109851_c0_g1_i2 from sample A2 / Example unspliced isoform:CTCGTGCCGTGAAATAATTCCCGGCGACGTACAAATACAATCACCACGTAAAGCCCAAAACCACGGTAAAGTCTTCCGGGTCCCCGGGAACAAACCCTATCTAGGTTGGCGGCAGAAAGCGGCTAGCGGAGAATGTTTCGTCATGTGACCACCGCTCGTTGGTGAGCGACGCCGCCAGCGGGCAGAGCGTAGTAAACATA
TGGCCAAAGAAGGCGATTTTTATTTAGAGCTGAATAGAAAACAGCGAGAGAGAGCTCGTAGAGCGAATAGCGATAAATTTAAAGGGAAGAAGAGCAGTGCAGAGGTTTTCAAAGGCAAAATATCCAACATACCAGAGCACCTGACTCGCCTCTTCGACATTTCAAGGTAAGGGAAACTAAACTACGCATTAAATTGAAGT
TGTTTATTTTGGTTTTCGCGCCTTATGATTTTGATTGCAGGACTGTTTTTTCGTTTTTCCTTTTAGATCTTTGTTCGAGAGCTTTAATTTCTGTCTCTGCAAGTCTTAGGATTTATCTCTTTGAGTGTCTATGCAAATGTTTATTTTAGGGCCTCTTTGCATCACGGTATTTAGTTTTTGACCGACTCGGCGATTTTTTT
ACGGCCGACCGTTTATTTTGCAGCCCGTGATGTTTCCAAACTAAATGCTCGGCTTCTAGgttagatcagcgatcgataattcaattcttgtttatatttaaatatattttgtagttattaggaaaactttcagtttattcatagaactgagtttgctttagtcgtctactgtctacgaagattgaccttttctgttttca
atgcgagaagttcatgtttatttatattttaaaattttcattgttcttgtttcactctatttaaaagcttaggttcttcgagcatgcctgtaccgatccatttctctgttttcttgctgcgtttctttagttttctgcccgtgtagggtttcggtttattttttttgaggcgagtgtatgcgtttctttgcagtttcgca
ggatagtatttccttttgttgtctgttaaatttattttctcctctcttatggaagggcgaggctgttttcactcgtcttgatgtagagttctaaatatatttgacggagttgtctttatttttttgcaagATGGATCGATACCAGAGAG
Intron 3 GTAAGGGAAA ... CGGCTTCTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 11.16 | 1902 | 209 | 269 |
| A2 | 11.54 | 2132 | 328 | 228 |
| A3 | 10.79 | 2298 | 283 | 273 |
| A4 | 12.08 | 1536 | 213 | 209 |
| A5 | 13.89 | 868 | 139 | 141 |
| A6 | 11.03 | 6044 | 724 | 774 |
| A7 | 10.68 | 10787 | 1283 | 1297 |
| A8 | 10.98 | 7288 | 901 | 897 |
| A9 | 10.83 | 9552 | 1192 | 1129 |
| A10 | 10.08 | 9760 | 1072 | 1116 |
>TRINITY_DN101163_c0_g1_i3 from sample A5 / Example spliced isoformGGAGGGGAGAGCTGAATAGAAAACAGCGAGAGAGAGCTCGTAGAGCGAATAGCGATAAATTTAAAGGGAAGAAGAGCAGTGCAGAGGTTTTCAAAGGCAAAATATCCAACATACCAGAGCACCTGACTCGCCTCTTCGACATTTCAAGATGGATCGATACCAGAGAGTCGAGAGGCCACGACCAGAGACTCCAATAAGTG
AGAATGAAATCCGTATTACTACACAAGGGAGAATGCGAAACTACATAACCTATGCAACGACATTGCTTCAGGATAAAGGATCATCTGAAATAGTTCTGAAAGCTATGGGGAGAGCAATCAACAAGACTGTTACTATTGCTGAGTTAATCAAGAGAAGGATTCCTGATCTTCATCAAAATACAATTATTGGATCAACTGAT
ATAACTGATACATGGCAGCCAATAGAGGAAGGACTTCTTCCGTTGGAAACCACCCGACATGTGTCCATGATTACAATAACATTGTCCACCAAGGAACTGGACACAAGCTCCACAGGATATCAGCCACCATTGCCAGCAGATCAAGTAAAACCATGGACTGATTTAGAATATGATGGAGAGGGTTCTCCTGGAGGTGGAAG
AGGCAGGGGGCGTGGTCCTCGGGGAAGAGGTAGAGCAAGAGGTAATGGAAATTTGGGTGGTGAATACTATGGTGATGGAAATTGGGAAAGGGGCCGTGGTTCAGGCCGAGGCCGAGGCCGAGGCCGTGGAAGGGGTCGTGGCTATCGTGGCCGTGGGAGAGGTTATGGTGTTTTTGAAGCCCAGCAAGATGCAGGGCGTG
GTCGTGGAAGAGGAAGAGGGCGTGATTTTCGATCCGATGAACAGATACATGAAATGCCTGTGGTAGCCTGATTGTGTGGTACAATTAGCCTTAGAACATATGGATGCCTGCTCTTGGAAGCATAGAACTTGAGTGTATGAATTTGTGTGTCTTGGGTAACTTTTAAGAGCTATCCTGTTGTAGGTGGCTGTTTTTTTGTA
GGTAGGCTCTTGTGAAAGTCTCATTCATCCCCAAGTATAATTTTTTTTTTGTATTTACAGAAAAAAATGTACAATTTCCATTCTAATAATTGAGCAGTACATTCTTTTATTCAAACAGATTATCAAGCCCATCTCAGATTTCTATTTGTTTCAGAGAATATAGAACTCATGTCAGCACAAGATAAAATAGGTGCTTGTAT
AATAATTAGTAGGGAATGTTGTCTGCATCTTGGTTTTGGAGAGTAGAACATTTGTGATAAACTTTACATATTTTATAAAAC
>TRINITY_DN101163_c0_g1_i2 from sample A5 / Example unspliced isoform:GGAGGGGAGAGCTGAATAGAAAACAGCGAGAGAGAGCTCGTAGAGCGAATAGCGATAAATTTAAAGGGAAGAAGAGCAGTGCAGAGGTTTTCAAAGGCAAAATATCCAACATACCAGAGCACCTGACTCGCCTCTTCGACATTTCAAGgtaagggaaactaaactacgcattaaattgaagttgtttattttggttttcg
cgccttatgattttgattgcaggactgttttttcgtttttccttttagatctttgttcgagagctttaatttctgtctctgcaagtcttaggatttatctctttgagtgtctatgcaaatgtttattttagggcctctttgcatcacggtatttagtttttgaccgactcggcgatttttttacggccgaccgtttattt
tgcagcccgtgatgtttccaaactaaatgctcggcttctagATGGATCGATACCAGAGAGTCGAGAGGCCACGACCAGAGACTCCAATAAGTGAGAATGAAATCCGTATTACTACACAAGGGAGAATGCGAAACTACATAACCTATGCAACGACATTGCTTCAGGATAAAGGATCATCTGAAATAGTTCTGAAAGCTATG
GGGAGAGCAATCAACAAGACTGTTACTATTGCTGAGTTAATCAAGAGAAGGATTCCTGATCTTCATCAAAATACAATTATTGGATCAACTGATATAACTGATACATGGCAGCCAATAGAGGAAGGACTTCTTCCGTTGGAAACCACCCGACATGTGTCCATGATTACAATAACATTGTCCACCAAGGAACTGGACACAAG
CTCCACAGGATATCAGCCACCATTGCCAGCAGATCAAGTAAAACCATGGACTGATTTAGAATATGATGGAGAGGGTTCTCCTGGAGGTGGAAGAGGCAGGGGGCGTGGTCCTCGGGGAAGAGGTAGAGCAAGAGGTAATGGAAATTTGGGTGGTGAATACTATGGTGATGGAAATTGGGAAAGGGGCCGTGGTTCAGGCC
GAGGCCGAGGCCGAGGCCGTGGAAGGGGTCGTGGCTATCGTGGCCGTGGGAGAGGTTATGGTGTTTTTGAAGCCCAGCAAGATGCAGGGCGTGGTCGTGGAAGAGGAAGAGGGCGTGATTTTCGATCCGATGAACAGATACATGAAATGCCTGTGGTAGCCTGATTGTGTGGTACAATTAGCCTTAGAACATATGGATGC
CTGCTCTTGGAAGCATAGAACTTGAGTGTATGAATTTGTGTGTCTTGGGTAACTTTTAAGAGCTATCCTGTTGTAGGTGGCTGTTTTTTTGTAGGTAGGCTCTTGTGAAAGTCTCATTCATCCCCAAGTATAATTTTTTTTTTGTATTTACAGAAAAAAATGTACAATTTCCATTCTAATAATTGAGCAGTACATTCTTT
TATTCAAACAGATTATCAAGCCCATCTCAGATTTCTATTTGTTTCAGAGAATATAGAACTCATGTCAGCACAAGATAAAATAGGTGCTTGTATAATAATTAGTAGGGAATGTTGTCTGCATCTTGGTTTTGGAGAGTAGAACATTTGTGATAAACTTTACATATTTTATAAAAC
Intron 4 GTAAGGGAAA ... TTTATTTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 49.06 | 217 | 209 | 5.7 |
| A2 | 49.85 | 330 | 328 | 6.7 |
| A3 | 49.74 | 286 | 283 | 10.3 |
| A4 | 50 | 213 | 213 | 2.3 |
| A5 | 50 | 139 | 139 | 11 |
| A6 | 48.85 | 758 | 724 | 9.3 |
| A7 | 49.25 | 1322 | 1283 | 18.3 |
| A8 | 49.32 | 926 | 901 | 10 |
| A9 | 49.63 | 1210 | 1192 | 9.7 |
| A10 | 50.26 | 1061 | 1072 | 5.3 |
>TRINITY_DN109851_c0_g1_i5 from sample A2 / Example spliced isoformGCTCGGACATCTGAAGTATCCGGAGTAAGCAAGGTAATCATATGATGATTTAAATAACTGCAACAACATGATAATCTCGTGATTACCAGTATTTAAGTCTCTGATGATCCCTGGCTATTTCACGTTTTATTGTAAATTCTTATTTCTAGGGTATTGTTGTGTGTTGCCTGTAGGGTTTTTAAGTTTTTGAAAGAAGCTCG
AGGATTAAATGCCGTAGGGCATTATACTTTTGCTGATCTATCAATACTTGATGAACGACCAATAAGATGAGAGCTGAATAGAAAACAGCGAGAGAGAGCTCGTAGAGCGAATAGCGATAAATTTAAAGGGAAGAAGAGCAGTGCAGAGGTTTTCAAAGGCAAAATATCCAACATACCAGAGCACCTGACTCGCCTCTTCG
ACATTTCAAGGGCCTCTTTGCATCACGGTATTTAGTTTTTGACCGACTCGGCGATTTTTTTACGGCCGACCGTTTATTTTGCAGCCCGTGATGTTTCCAAACTAAATGCTCGGCTTCTAGATGGATCGATACCAGAGAGTCGAGAGGCCACGACCAGAGACTCCAATAAGTGAGAATGAAATCCGTATTACTACACAAGG
GAGAATGCGAAACTACATAACCTATGCAACGACATTGCTTCAGGATAAAGGATCATCTGAAATAGTTCTGAAAGCTATGGGGAGAGCAATCAACAAGACTGTTACTATTGCTGAGTTAATCAAGAGAAGGATTCCTGATCTTCATCAAAATACAATTATTGGATCAACTGATATAACTGATACATGGCAGCCAATAGAGG
AAGGACTTCTTCCGTTGGAAACCACCCGACATGTGTCCATGATTACAATAACATTGTCCACCAAGGAACTGGACACAAGCTCCACAGGATATCAGCCACCATTGCCAGCAGATCAAGTAAAACCATGGACTGATTTAGAATATGATGGAGAGGGTTCTCCTGGAGGTGGAAGAGGCAGGGGGCGTGGTCCTCGGGGAAGA
GGTAGAGCAAGAGGTAATGGAAATTTGGGTGGTGAATACTATGGTGATGGAAATTGGGAAAGGGGCCGTGGTTCAGGCCGAGGCCGAGGCCGAGGCCGTGGAAGGGGTCGTGGCTATCGTGGCCGTGGGAGAGGTTATGGTGTTTTTGAAGCCCAGCAAGATGCAGGGCGTGGTCGTGGAAGAGGAAGAGGGCGTGATTT
TCGATCCGATGAACAGATACATGAAATGCCTGTGGTAGCCTGATTGTGTGGTACAATTAGCCTTAGAACATATGGATGCCTGCTCTTGGAAGCATAGAACTTGAGTGTATGAATTTGTGTGTCTTGGGTAACTTTTAAGAGCTATCCTGTTGTAGGTGGCTGTTTTTTTGTAGGTAGGCTCTTGTGAAAGTCTCATTCAT
CCCCAAGTATAATTTTTTTTTTGTATTTACAGAAAAAAATGTACAATTTCCATTCTAATAATTGAGCAGTACATTCTTTTATTCAAACAGATTATCAAGCCCATCTCAGATTTCTATTTGTTTCAGAGAATATAGAACTCATGTCAGCACAAGATAAAATAGGTGCTTGTATAATAATTAGTAGGGAATGTTGTCTGCAT
CTTGGTTTTGGAGAGTAGAACATTTGTGATAAACTTTACATATTTTATAAAACATTGATCACTACATTTCTTTTTAAGAATGGTTTAATATGGTATTAAAATATGCTGTAGTTGAGCTGAACAGCATGGAAATACAAATTGAGAGCATGCCTAGCTTCAAAAAGGATATGCTCTGTAATGACTGCAAAGTACAACCTATA
AACATTTGCAATACTGCTTACAAAACTTGACATAGAGCAGCTGGTAGTATAGATTCTAAAACAGACACCTAGGATTAAAACATATTTGCAATACATTGACAGTGACATGATTAAGGGTAGGCACACTTTCACATTGTGTCATCTTGGGCGTG
>TRINITY_DN109851_c0_g1_i2 from sample A2 / Example unspliced isoform:CTCGTGCCGTGAAATAATTCCCGGCGACGTACAAATACAATCACCACGTAAAGCCCAAAACCACGGTAAAGTCTTCCGGGTCCCCGGGAACAAACCCTATCTAGGTTGGCGGCAGAAAGCGGCTAGCGGAGAATGTTTCGTCATGTGACCACCGCTCGTTGGTGAGCGACGCCGCCAGCGGGCAGAGCGTAGTAAACATA
TGGCCAAAGAAGGCGATTTTTATTTAGAGCTGAATAGAAAACAGCGAGAGAGAGCTCGTAGAGCGAATAGCGATAAATTTAAAGGGAAGAAGAGCAGTGCAGAGGTTTTCAAAGGCAAAATATCCAACATACCAGAGCACCTGACTCGCCTCTTCGACATTTCAAGgtaagggaaactaaactacgcattaaattgaagt
tgtttattttggttttcgcgccttatgattttgattgcaggactgttttttcgtttttccttttagatctttgttcgagagctttaatttctgtctctgcaagtcttaggatttatctctttgagtgtctatgcaaatgtttattttagGGCCTCTTTGCATCACGGTATTTAGTTTTTGACCGACTCGGCGATTTTTTT
ACGGCCGACCGTTTATTTTGCAGCCCGTGATGTTTCCAAACTAAATGCTCGGCTTCTAGGTTAGATCAGCGATCGATAATTCAATTCTTGTTTATATTTAAATATATTTTGTAGTTATTAGGAAAACTTTCAGTTTATTCATAGAACTGAGTTTGCTTTAGTCGTCTACTGTCTACGAAGATTGACCTTTTCTGTTTTCA
ATGCGAGAAGTTCATGTTTATTTATATTTTAAAATTTTCATTGTTCTTGTTTCACTCTATTTAAAAGCTTAGGTTCTTCGAGCATGCCTGTACCGATCCATTTCTCTGTTTTCTTGCTGCGTTTCTTTAGTTTTCTGCCCGTGTAGGGTTTCGGTTTATTTTTTTTGAGGCGAGTGTATGCGTTTCTTTGCAGTTTCGCA
GGATAGTATTTCCTTTTGTTGTCTGTTAAATTTATTTTCTCCTCTCTTATGGAAGGGCGAGGCTGTTTTCACTCGTCTTGATGTAGAGTTCTAAATATATTTGACGGAGTTGTCTTTATTTTTTTGCAAGATGGATCGATACCAGAGAG
Intron 5 GTTTGTCATG ... CCCCCTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 14.65 | 1557.1 | 163.7 | 371 |
| A2 | 15.19 | 1415.2 | 183 | 324 |
| A3 | 14.25 | 1555.7 | 185 | 332 |
| A4 | 15.24 | 1034.4 | 145.3 | 226.7 |
| A5 | 13.25 | 517.3 | 63 | 95 |
| A6 | 14.5 | 5633.3 | 612 | 1299.3 |
| A7 | 14.85 | 9274.7 | 1048.7 | 2187.3 |
| A8 | 14.96 | 6972.3 | 819.7 | 1632.7 |
| A9 | 14.71 | 7779.6 | 856.3 | 1827.7 |
| A10 | 13.39 | 7819.2 | 728.7 | 1689.7 |
>TRINITY_DN118067_c0_g3_i9 from sample A1 / Example spliced isoformGGGAACAAACCCTATCTAGGTTGGCGGCAGAAAGCGGCTAGCGGAGAATGTTTCGTCATGTGACCACCGCTCGTTGGTGAGCGACGCCGCCAGCGGGCAGAGCGTAGTAAACATATGGCCAAAGAAGGCGATTTTTATTTAGAGCTGAATAGAAAACAGCGAGAGAGAGCTCGTAGAGCGAATAGCGATAAATTTAAAGG
GAAGAAGAGCAGTGCAGAGGTTTTCAAAGGCAAAATATCCAACATACCAGAGCACCTGACTCGCCTCTTCGACATTTCAAGATGGATCGATACCAGAGAGTCGAGAGGCCACGACCAGAGACTCCAATAAGTGAGAATGAAATCCGTATTACTACACAAGGGAGAATGCGAAACTACATAACCTATGCAACGACATTGCT
TCAGGATAAAGGATCATCTGAAATAGTTCTGAAAGCTATGGGGAGAGCAATCAACAAGACTGTTACTATTGCTGAGTTAATCAAGAGAAGGATTCCTGATCTTCATCAAAATACAATTATTGGATCAACTGATATAACTGATACATGGCAGCCAATAGAGGAAGGACTTCTTCCGTTGGAAACCACCCGACATGTGTCCA
TGATTACAATAACATTGTCCACCAAGGAACTGGACACAAGCTCCACAGGATATCAGCCACCATTGCCAGCAGATCAAGTAAAACCATGGACTGATTTAGAATATGATGGAGAGGGTTCTCCTGGAGGTGGAAGAGGCAGGGGGCGTGGTCCTCGGGGAAGAGGTAGAGCAAGAGGTAATGGAAATTTGGGTGGTGAATAC
TATGGTGATGGAAATTGGGAAAGGGGCCGTGGTTCAGGCCGAGGCCGAGGCCGAGGCCGTGGAAGGGGTCGTGGCTATCGTGGCCGTGGGAGAGGTTATGGTGTTTTTGAAGCCCAGCAAGATGCAGGTGGGTACAAAGTTTTTTGCACATAAGAATGCCTATATAAGGCTGTGATATTAATCTTTTTGTGCCTAGATGT
TGCTGGTTCTAATATTTGTTTAAATGCACGTTTCTTGTTGTCAGTTGCTTGTATGCCTGTTTTTTTACATCATGTGCTTATGTTTAGCATTTTGACACTCTGTACATGTTTTAGCATTTTGACAGGCTGCACATGTTTAGCAATTTGATAGGCTGTGAATTGTTTTGTATATATTTCTGTTCTTGTTGTTCACATTCTAT
TTAGATGTCATATAGACTCATCTTCTAAAAGTGTATTTCTACTTTGGTCCTAGCCTGGGCGATAGGTGACTAGGCAGAGTTACCATGAGACTTGAGTCATTTCTCTTCATTAAATTGTGAATTTTTATACCCTCTAGTTTATATTTTCAGTTAAACATTCACTTCAGATTATTTACCCGCAGAGAACACTGC
>TRINITY_DN118067_c0_g3_i6 from sample A1 / Example unspliced isoform:GGGAACAAACCCTATCTAGGTTGGCGGCAGAAAGCGGCTAGCGGAGAATGTTTCGTCATGTGACCACCGCTCGTTGGTGAGCGACGCCGCCAGCGGGCAGAGCGTAGTAAACATATGGCCAAAGAAGGCGATTTTTATTTAGAGCTGAATAGAAAACAGCGAGAGAGAGCTCGTAGAGCGAATAGCGATAAATTTAAAGG
GAAGAAGAGCAGTGCAGAGGTTTTCAAAGGCAAAATATCCAACATACCAGAGCACCTGACTCGCCTCTTCGACATTTCAAGATGGATCGATACCAGAGAGTCGAGAGGCCACGACCAGAGACTCCAATAAGTGAGAATGAAATCCGTATTACTACACAAGGGAGAATGCGAAACTACATAACCTATGCAACGACATTGCT
TCAGGATAAAGGATCATCTGAAATAGTTCTGAAAGCTATGGGGAGAGCAATCAACAAGACTGTTACTATTGCTGAGTTAATCAAGgtttgtcatggttattgctgaccttttttgataggatagatattatttactttttctttaacctcagaaagtccacatcaacatatttaaagagttaagctgcaggtttcacagg
ttagttgggttagtacggtgtctattccgagttcatttcaattcaagctttaggtcattttatcaaatatgatttcataactgccccctgcagAGAAGGATTCCTGATCTTCATCAAAATACAATTATTGGATCAACTGATATAACTGATACATGGCAGCCAATAGAGGAAGGACTTCTTCCGTTGGAAACCACCCGACA
TGTGTCCATGATTACAATAACATTGTCCACCAAGGAACTGGACACAAGCTCCACAGGATATCAGCCACCATTGCCAGCAGATCAAGTAAAACCATGGACTGATTTAGAATATGATGGAGAGGGTTCTCCTGGAGGTGGAAGAGGCAGGGGGCGTGGTCCTCGGGGAAGAGGTAGAGCAAGAGGT