sp|P94102|RAD51_ARATH ----> DNA repair protein RAD51 homolog 1

Intron 1 GTTAGAAATG ... GTTCATACAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	67.42	66.9	78.1	136.3
A2	68.25	45	52.1	95.7
A3	58.79	72.6	62.8	102.4
A4	57.74	22	34.7	28.8
A5	64.66	24.1	20.1	43
A6	35.19	51.7	1.7	28
A7	34.47	44.6	3	23.3
A8	38.82	42.4	1.8	26.9
A9	31.06	40.1	2.3	18
A10	27.23	31.6	4.3	11.8

>TRINITY_DN45418_c4_g1_i2 from sample A6 / Example spliced isoform

GCTATCTTAGATAGGATTGCAAAGATGCCAGGTAAGCTTCAATTTAAAATTCTGTTTTTTCCTTTATATATATTTGACATTTATTACTTGATAGAAATATATTTTGTTGTCTTCCATTGAATCCTTTCATTTTATTCATTGTAGATGTATGGTGGAAACACTATGGTGGAAAGCTCCCACAATTGCAGAAACTTGCCGTT
CAGGTGCTTAGCCAAACTTGCAGTTCTTCAGGGTGTGAGCGCAATTGGAGTGTCTTTGAAAAGATACACTCCAAGAAGCGCAACAGGTTAGGTACCCAACGCCTTAATGACATGGTGTATGTCTACTACAATCTAAGGCTATGGGTGAAGCAACTTGACAAAGAACCTGACATAGAGGCCATAAATTTGGATGCCATTGA
CACCACTACTCAGTGGAGAGTGGAGTTGGAGGAGGCACCCGAGTGGTTGGAGGAGGGGGAGGATCATGCAGATGATTTGGGGGAGGAGACCACAGTGGAGGGGGAGGGTAGGGAGGAGCAGGAGGATGATCCACTTCCAGTGT

>TRINITY_DN45418_c4_g1_i10 from sample A6 / Example unspliced isoform:

TCCAAGAAGCGCAACAGgttagaaatgttaaaaaatgcaacaatgaagatttaaattgcttatattttttaatttgtaattttcatttactacaatttaccattggtccattactaactatggccctcaatgttcatacagGTTAGGTACCCAACGCCTTAATGACATGGTGTATGTCTACTACAATCTAAGGCTATGGG
TGAAGCAACTTGACAAAGAACCTGACATAGAGGCCATAAATTTGGATGCCATTGACACCACTACTCAGTGAAGGGTGGAGTTGGAGGAGCCTGAGATGGAGGAGGCACCCGAGTGGTTGGAGGAGGGGGAGGATCATGCAGATGATTTGGGGGAGGAGACCACAGTGGAGGGGGAGGGTAGGGAGGAGCAGGAGGATGAT
CCACTTCCAGTGTATACAGATTTTCAGGAGGAGATTGATCTTCCGGTGCAGCCAATGCCACCACCACCACCACCACAGAGACCTGTAGTTGGAGTTGGGGTTGGGAGGAGACAACCCACTTTATCTTCTGCCTCAGCTGGAGTAGTTGGAGGCTCTGGATCTTCCACTCCAACCTCATCCCGAGTACCTCCACGACCACC
TACTGCTTCCAGAGGAAGAGTGGTACCCTTTACCCATAAAAGGGGTAGAGGGAATTGATGATTGGGATTCCTATGATCTATCATTTTGATTTTATTATGTAGTATTTAGTATCTAGATGCCTCATGATGATTCATTTCATGAAATACATTTATTTTGAG

Intron 2 GTTAAAATTG ... GTTCATACAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	69.04	68	154	149
A2	68.83	46.7	103	103
A3	60.11	74.3	119	105
A4	72.01	24	76	47
A5	62.5	27	41	49
A6	20.4	52.7	2	25
A7	21.37	46	4	21
A8	26.01	42.7	4	26
A9	20.39	41	3	18
A10	21.79	32.3	6	12

>TRINITY_DN48940_c3_g3_i11 from sample A7 / Example spliced isoform

CCATTAGCGGAGAGATCGTGGTGGAGTGGGGATTCAAACTTCAAACCATCAAGATTTCCAGATGTATGGTGGAAACACTATGGTGGAAAGCTCCCACAGTAGCAGAAACTTGCCGTTCGGGTGCTTAGCCAAACTTGCAGTTCTTCAGGGTGTGAGCGCAATTGGAGTGTCTTTGAAAAGATACACTCCAAGAAGCGCAA
CAGGTTAGGTACCCAACGCCTTAATGACATGGTGTATGTCTACTACAATCTAAGGCTATGGGTGAAGCAACTTGACAAAGAACCTGACATAGAGGCCATAAATTTGCATGCCATTGACACCACTACTCAGTGGAGAGTGGAGTTGGAGGAGCCTGAGATGGAGGAGGCACCCGAGTGGTTGGAGGAGGGGGAGGATCATG
CAGATGATTTGGGGGAGGAGACCACAGTGGAGGGGGAGGGTAGGGAGGAGCAGGAGGATGATCCACTTCCAGTGTATACAGATTTTCAGGAGGAGATTGATCTTCCGGTGCAGCCAATGCCACCACCACCACCACCA

>TRINITY_DN48940_c3_g3_i13 from sample A7 / Example unspliced isoform:

CGTTCGGGTGCTTAGCCAAACTTGCAGTTCTTCAGGGTGTGAGCGCAATTGGAGTGTCTTTGAAAAGATACACTCCAAGAAGCGCAACAGgttaaaattgttcaaaaatgcaacaatgaaagtttaaattgtttatattttttaatttttaattttaatttactacaatttaccattactaactatggccctcaatgttc
atacagGTTAGGTACCCAACGCCTTAATGACATGGTGTATGTCTACTACAATCTAAGGCTATGGGTGAAGCAACTTGACAAAGAACCTGACATAGAGGCCATAAATTTGCATGCCATTGACACCACTACTCAGTG

Intron 3 ATTGAGGGCC ... CTGTGTGAAC

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	6.56	121	3	14
A2	14.12	76	17	8
A3	5.49	86	4	6
A4	6.67	21	2	1
A5	10.59	38	5	4
A6	0	16	0	0
A7	0	15	0	0
A8	11.11	16	2	2
A9	7.14	13	2	0
A10	0	9	0	0

>TRINITY_DN124407_c5_g1_i4 from sample A3 / Example spliced isoform

GTGGTCTCATCCCCCAAATCATCTGCATGATCCTCCCCCTCCTCCGGCTCCAACCACTCGGGTGCCTCCTCCATCTCAGGCTCCTCCAACTCCACTCTCCACTGAGTAGTGGTGTCAATGGCATCCAAATTTATGGCCTCTATGTCAGGTTCTTTGTCAAGTTGCTTCACCCATAGCCTTAGATTGTAGTAGACATAAAC
CATGTCATTAAGGCGTTGGGTACCTAACCTGTATGAACATTGAGGGCCATAGTTAGTAATGGACCAATGGTAAATTGTAGTAAATGAAAATTACAAATTAAAAAATATAAGCAATTTAAATTTTCATTGTTGCATTTTTTAACATTTCTA

>TRINITY_DN124407_c5_g1_i5 from sample A3 / Example unspliced isoform:

AACCCTCATTAGTTAAATTTTAAGCTTTGCAAGTTCCCATTATCATGTGTTTATTTTGGTGTCAAGTTGCTTCACCCATAGCCTTAGATTGTAGTAGACATACACCATGTCATTAAGGCGTTGGGTACCTAACCTGTATGAACattgagggccatagcctgtgtgaacATTGAGGGCCATAGTTAGTAATGGACCAATGG
TAAATTGTAGTAAATGAAAATTACAAATTAAAAAATATAAGCAATTTAAATTTTCATTGTTGCATTTTTTAACATTTCTA