sp|P46302|RS28_MAIZE ----> Small ribosomal subunit protein eS28


Intron 1 GTGGATCAAC ... AGCATTGGAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A121.32109.518.542
A226.7315917.563.3
A333.021437.559.5
A422.91115.818.840.3
A519.397.810.533
A624.691928.8192.3736
A726.88886.592.5373
A824.39838111.5314.3
A920.781045.8131.5342.5
A1024.11579.391.3218.5



>TRINITY_DN90851_c0_g1_i3 from sample A4 / Example spliced isoform
AGACCATCGATTTAACGGACGGTTCCGATGAACTAGGGTTTGAGGGTTCGAACAGCTAGATCATCTGAAACCCTAAAGAGGGGTTTATTTTTACCCTATCTTAAGAGCCTCAGAAGTCGAACTTTCAGGCTTTCCGGTGGAACTTGAACAGAGATTTGGAGCTCAGAGCGAGAGGGTTCGTCTACGAGGAAATCATGGAT
ACAGGTGTGAAGTTGGCAGTTGTGGTGAAAGTAATTGGCCGTACTGGATCAAGAGGTCAAGTTACACAGGTCCGAGTGAAGTTTTTGGATGATCAGAATCGGCTCATCATGAGGAACGTAAAAGGACCTGTCAGAGAGGGTGATGTCCTTACTCTGTTAGAGTCTGAAAGGGAAGCAAGAAGATTGCGGTGATCATGTTC
TTCGGATTATAGATTGGAGTTTAAAGTTTCAATGGATTAGCTTTATGGTTTTTGCTTTTCTTTTCAATGCAATTAGGTCAAGTGTAAGGCACTGAATGGTCTGTGATAATTTTATTTCAATTTGTTTTGGATGATGAAGACCCATCTTACTTTTGAGGAGGGAGTTGGAACAATAACTATGGATTGAAATTCAAATTAAT
GCAATTGCATATTTTGTGTGGAGAAGCATAACTATATAGTTGTGCTTGTTTTTACAAACTTATTCTCTTTCGCTCTTTTACAACTTAAATTAAGTGCATTTTGTTACAGGGTTTGT


>TRINITY_DN90851_c0_g1_i2 from sample A4 / Example unspliced isoform:
AGCGAGAGGGTTCGTCTACGAGgtggatcaactgtggcatttaagctgtgtttggtttgcaactcatcttcaatacccagatgaaggcttgatcaatgtttgttatttttcttctcaattttgtgttgcaaacttgccctgccctgtaccattctagttcttcagcattggaggcggatcaactgtggcatttaaagctg
tgtttggtttgcaactcatcttcaatacccagatgaaggcttgatcaatgtttgttatttttcttctcaattttgtgtcgcaaacttgccctgtaccattctagtccttcagcattggag
GAAATCATGGATACAGGTGTGAAGTTGGCAGTTGTGGTGAAAGTAATTGGCCGTACTGGATCAAGAGGTCAAGTTACACA
GGTCCGAGTGAAGTTTTTGGATGATCAGAATCGGCTCATCATGAGGAACGTAAAAGGACCTGTCAGAGAGGGTGATGTCCTTACTCTGTTAGAGTCTGAAAGGGAAGCAAGAAGATTGCGGTGATCATGTTCTTCGGATTATAGATTGGAGTTTAAAGTTTCAATGGATTAGCTTTATGGTTTTTGCTTTTCTTTTCAAT
GCAATTAGGTCAAGTGTAAGGCACTGAATGGTCTGTGATAATTTTATTTCAATTTGTTTTGGATGATGAAGACCCATCTTACTTTTGAGGAGGGAGTTGGAACAATAACTATGGATTGAAATTCAAATTAATGCAATTGCATATTTTGTGTGGAGAAGCATAACTATATAGTTGTGCTTGTTTTTACAAACTTATTCTCT
TTCGCTCTTTTACAACTTAAATTAAGTGCATTTTGTTACAGGGTTTGT




Intron 2 GCGGTGCTTA ... ATTGTGGCAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A150.4456057
A252.3382490
A352.7378487
A456.5653269
A554.1744052
A651.91968331045
A752.7949119549
A852.8641221462
A952.7145311505
A1051.228513299



>TRINITY_DN40334_c0_g1_i3 from sample A7 / Example spliced isoform
CATGGACATCGTCTTCTATTCTGCTTAAATCCATCGTCATCTATTTTGCTCGAATCTATCGCTACAGGCGGCCTTCGTTATAGGCGGCCTTATCGATTTAGTGGCGGATCAACTGTGGCATTTAAAGCTGTGTTTGGTTTGCAACTCATCTTCAATACCCAGATGAAGGCTTGATCAATGTTTGTTATTTTTCTTCTCAA
TTTTGTGTCGCAAACTTGCCCTGTACCATTCTAGTCCTTCAGCATTGGAGGAAATCATGGATACAGGTGTGAAGTTGGCAGTTGTGGTGAAAGTAATTGGCCGTACTGGATCAAGAGGTCAAGTTACACAGGTCCGAGTGAAGTTTTTGGATGATCAGAATCGGCTCATCATGAGGAACGTAAAAGGACCTGTCAGAGAG
GGTGATGTCCTTACTCTGTTAGAGTCTGAAAGGGAAGCAAGAAGATTGCGGTGATCATGTTCTTCGGATTATAGATTGGAGTTTAAAGTTTCAATGGATTAGCTTTATGGTTTTTGCTTTTCTTTTCAATGCAATTAGGTCAAGTGTAAGGCACTGAATGGTCTGTGATAATTTTATTTCAATTTGTTTTGGATGATGAA
GACCCATCTTACTTTTGAGGAGGGAGTTGGAACAATAACTATGGATTGAAATTCAAATTAATGCAATTGCATATTTTGTGTGGAGAAGCATAACTATATAGTTGTGCTTGTTTTTACAAACTTATTCTCTTTCGCTCTTTTACAACTTAAATTAAGTGCATTTTGTTACAGGGCA


>TRINITY_DN40334_c0_g1_i9 from sample A7 / Example unspliced isoform:
ATCTTAATGAATCAAAAACAATTTTAGATCACACTCCAAACCAATAAACACACTACATCTAATAAAAAGTCTTTCACAATAATTACTTTTTAAAAAACTAATAAAAAAAGGATGTGTAATTTAGACCATCGATTTAACGGACGGTTCCGATGAACTAGGGTTTGAGGGTTCGAACAGCTAGATCATCTGAAACCCTAAAG
AGGGGTTTATTTTTACCCTATCTTAAGAGCCTCAGAAGTCGAACTTTCAGGCTTTCCGGTGGAACTTGAACAGAGATTTGGAGCTCAGAGCGAGAGGGTTCGTCTACGAGGTGGATCAACTGTGGCATTTAAGCTGTGTTTGGTTTGCAACTCATCTTCAATACCCAGATGAAGGCTTGATCAATGTTTGTTATTTTTCT
TCTCAATTTTGTGTTGCAAACTTGCCCTGCCCTGTACCATTCTAGTTCTTCAGCATTGGAGGCGGATCAACTGTGGCATTTAAAGCTGTGTTTGGTTTGCAACTCATCTTCAATACCCAGATGAAGGCTTGATCAATGTTTGTTATTTTTCTTCTCAATTTTGTGTCGCAAACTTGCCCTGTACCATTCTAGTCCTTCAG
CATTGGAGgcggtgcttaattcaaggatttgcctcttaattgtggcagGAAATCATGGATACAGGTGTGAAGTTGGCAGTTGTGGTGAAAGTAATTGGCCGTACTGGATCAAGAGGTCAAGTTACACAGGTCCGAGTGAAGTTTTTGGATGATCAGAATCGGCTCATCATGAGGAACGTAAAAGGACCTGTCAGAGAGGG
TGATGTCCTTACTCTGTTAGAGTCTGAAAGGGAAGCAAGAAGATTGCGGTGATCATGTTCTTCGGATTATAGATTGGAGTTTAAAGTTTCAATGGATTAGCTTTATGGTTTTTGCTTTTCTTTTCAATGCAATTAGGTCAAGTGTAAGGCACTGAATGGTCTGTGATAATTTTATTTCAATTTGTTTTGGATGATGAAGA
CCCATCTTACTTTTGAGGAGGGAGTTGGAACAATAACTATGGATTGAAATTCAAATTAATGCAATTGCATATTTTGTGTGGAGAAGCATAACTATATAGTTGTGCTTGTTTTTACAAACTTATTCTCTTTCGCTCTTTTACAACTTAAATTAAGTGCATTTTGTTACAGGGCA




Intron 3 GTGGATCAAC ... AGCATTGGAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A140.2522175
A239.4421167
A344.38874
A441.222217.36
A545.37109.73
A637.64239174.348
A739.3911284.726
A835.1914510014
A938.1615711926
A1036.6711582.316



>TRINITY_DN90851_c0_g1_i1 from sample A4 / Example spliced isoform
AGACCATCGATTTAACGGACGGTTCCGATGAACTAGGGTTTGAGGGTTCGAACAGCTAGATCATCTGAAACCCTAAAGAGGGGTTTATTTTTACCCTATCTTAAGAGCCTCAGAAGTCGAACTTTCAGGCTTTCCGGTGGAACTTGAACAGAGATTTGGAGCTCAGAGCGAGAGGGTTCGTCTACGAGGCGGATCAACTG
TGGCATTTAAAGCTGTGTTTGGTTTGCAACTCATCTTCAATACCCAGATGAAGGCTTGATCAATGTTTGTTATTTTTCTTCTCAATTTTGTGTCGCAAACTTGCCCTGTACCATTCTAGTCCTTCAGCATTGGAGGAAATCATGGATACAGGTGTGAAGTTGGCAGTTGTGGTGAAAGTAATTGGCCGTACTGGATCAAG
AGGTCAAGTTACACAGGTCCGAGTGAAGTTTTTGGATGATCAGAATCGGCTCATCATGAGGAACGTAAAAGGACCTGTCAGAGAGGGTGATGTCCTTACTCTGTTAGAGTCTGAAAGGGAAGCAAGAAGATTGCGGTGATCATGTTCTTCGGATTATAGATTGGAGTTTAAAGTTTCAATGGATTAGCTTTATGGTTTTT
GCTTTTCTTTTCAATGCAATTAGGTCAAGTGTAAGGCACTGAATGGTCTGTGATAATTTTATTTCAATTTGTTTTGGATGATGAAGACCCATCTTACTTTTGAGGAGGGAGTTGGAACAATAACTATGGATTGAAATTCAAATTAATGCAATTGCATATTTTGTGTGGAGAAGCATAACTATATAGTTGTGCTTGTTTTT
ACAAACTTATTCTCTTTCGCTCTTTTACAACTTAAATTAAGTGCATTTTGTTACAGGGTTTGT


>TRINITY_DN90851_c0_g1_i2 from sample A4 / Example unspliced isoform:
AGCGAGAGGGTTCGTCTACGAGgtggatcaactgtggcatttaagctgtgtttggtttgcaactcatcttcaatacccagatgaaggcttgatcaatgtttgttatttttcttctcaattttgtgttgcaaacttgccctgccctgtaccattctagttcttcagcattggagGCGGATCAACTGTGGCATTTAAAGCTG
TGTTTGGTTTGCAACTCATCTTCAATACCCAGATGAAGGCTTGATCAATGTTTGTTATTTTTCTTCTCAATTTTGTGTCGCAAACTTGCCCTGTACCATTCTAGTCCTTCAGCATTGGAGGAAATCATGGATACAGGTGTGAAGTTGGCAGTTGTGGTGAAAGTAATTGGCCGTACTGGATCAAGAGGTCAAGTTACACA
GGTCCGAGTGAAGTTTTTGGATGATCAGAATCGGCTCATCATGAGGAACGTAAAAGGACCTGTCAGAGAGGGTGATGTCCTTACTCTGTTAGAGTCTGAAAGGGAAGCAAGAAGATTGCGGTGATCATGTTCTTCGGATTATAGATTGGAGTTTAAAGTTTCAATGGATTAGCTTTATGGTTTTTGCTTTTCTTTTCAAT
GCAATTAGGTCAAGTGTAAGGCACTGAATGGTCTGTGATAATTTTATTTCAATTTGTTTTGGATGATGAAGACCCATCTTACTTTTGAGGAGGGAGTTGGAACAATAACTATGGATTGAAATTCAAATTAATGCAATTGCATATTTTGTGTGGAGAAGCATAACTATATAGTTGTGCTTGTTTTTACAAACTTATTCTCT
TTCGCTCTTTTACAACTTAAATTAAGTGCATTTTGTTACAGGGTTTGT




Intron 4 GCGGATCAAC ... AGCATTGGAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A128.43141456
A228.37207482
A329.21189278
A426.11150553
A525.73127044
A627.81251032967
A729.87115321491
A827.6910768412
A925.11135115453
A1027.727439285



>TRINITY_DN108118_c0_g1_i1 from sample A1 / Example spliced isoform
TTAGACCATCGATTTAACGGACGGTTCCGATGAACTAGGGTTTGAGGGTTCGAACAGCTAGATCATCTGAAACCCTAAAGAGGGGTTTATTTTTACCCTATCTTAAGAGCCTCAGAAGTCGAACTTTCAGGCTTTCCGGTGGAACTTGAACAGAGATTTGGAGCTCAGAGCGAGAGGGTTCGTCTACGAGGAAATCATGG
ATACAGGTGTGAAGTTGGCAGTTGTGGTGAAAGTAATTGGCCGTACTGGATCAAGAGGTCAAGTTACACAGGTCCGAGTGAAGTTTTTGGATGATCAGAATCGGCTCATCATGAGGAACGTAAAAGGACCTGTCAGAGAGGGTGATGTCCTTACTCTGTTAGAGTCTGAAAGGGAAGCAAGAAGATTGCGGTGATCATGT
TCTTCGGATTATAGATTGGAGTTTAAAGTTTCAATGGATTAGCTTTATGGTTTTTGCTTTTCTTTTCAATGCAATTAGGTCAAGTGTAAGGCACTGAATGGTCTGTGATAATTTTATTTCAATTTGTTTTGGATGATGAAGACCCATCTTACTTTTGAGGAGGGAGTTGGAACAATAACTATGGATTGAAATTCAAATTA
ATGCAATTGCATATTTTGTGTGGAGAAGCATAACTATATAGTTGTGCTTGTTTTTACAAACTTATTCTCTTTCGCTCTTTTACAACTTAAATTAAGTGCAT


>TRINITY_DN108118_c0_g1_i2 from sample A1 / Example unspliced isoform:
AGCGAGAGGGTTCGTCTACGAGgcggatcaactgtggcatttaaagctgtgtttggtttgcaactcatcttcaatacccagatgaaggcttgatcaatgtttgttattttcttctcaattttgtgtcgcaaacttgccctgtaccattctagtccttcagcattggagGAAATCATGGATACAGGTGTGAAGTTGGCAGT
TGTGGTGAAAGTAATTGGCCGTACTGGATCAAGAGGTCAAGTTACACAGGTCCGAGTGAAGTTTTTGGATGATCAGAATCGGCTCATCATGAGGAACGTAAAAGGACCTGTCAGAGAGGGTGATGTCCTTACTCTGTTAGAGTCTGAAAGGGAAGCAAGAAGATTGCGGTGATCATGTTCTTCGGATTATAGATTGGAGT
TTAAAGTTTCAATGGATTAGCTTTATGGTTTTTGCTTTTCTTTTCAATGCAATTAGGTCAAGTGTAAGGCACTGAATGGTCTGTGATAATTTTATTTCAATTTGTTTTGGATGATGAAGACCCATCTTACTTTTGAGGAGGGAGTTGGAACAATAACTATGGATTGAAATTCAAATTAATGCAATTGCATATTTTGTGTG
GAGAAGCATAACTATATAGTTGTGCTTGTTTTTACAAACTTATTCTCTTTCGCTCTTTTACAACTTAAATTAAGTGCAT




Intron 5 GCGGATCAAC ... AGCATTGGAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A127.5397.818.444.8
A230.2414417.466.2
A336.35130.26.863.2
A428.06103.818.442.8
A524.988835.2
A629.461741195.4780.6
A731.29811.894.2396.6
A829.34755.6117.2333.8
A926.76929.4128.6365
A1029.08521.893.8230.6



>TRINITY_DN90851_c0_g1_i3 from sample A4 / Example spliced isoform
AGACCATCGATTTAACGGACGGTTCCGATGAACTAGGGTTTGAGGGTTCGAACAGCTAGATCATCTGAAACCCTAAAGAGGGGTTTATTTTTACCCTATCTTAAGAGCCTCAGAAGTCGAACTTTCAGGCTTTCCGGTGGAACTTGAACAGAGATTTGGAGCTCAGAGCGAGAGGGTTCGTCTACGAGGAAATCATGGAT
ACAGGTGTGAAGTTGGCAGTTGTGGTGAAAGTAATTGGCCGTACTGGATCAAGAGGTCAAGTTACACAGGTCCGAGTGAAGTTTTTGGATGATCAGAATCGGCTCATCATGAGGAACGTAAAAGGACCTGTCAGAGAGGGTGATGTCCTTACTCTGTTAGAGTCTGAAAGGGAAGCAAGAAGATTGCGGTGATCATGTTC
TTCGGATTATAGATTGGAGTTTAAAGTTTCAATGGATTAGCTTTATGGTTTTTGCTTTTCTTTTCAATGCAATTAGGTCAAGTGTAAGGCACTGAATGGTCTGTGATAATTTTATTTCAATTTGTTTTGGATGATGAAGACCCATCTTACTTTTGAGGAGGGAGTTGGAACAATAACTATGGATTGAAATTCAAATTAAT
GCAATTGCATATTTTGTGTGGAGAAGCATAACTATATAGTTGTGCTTGTTTTTACAAACTTATTCTCTTTCGCTCTTTTACAACTTAAATTAAGTGCATTTTGTTACAGGGTTTGT


>TRINITY_DN90851_c0_g1_i1 from sample A4 / Example unspliced isoform:
AGACCATCGATTTAACGGACGGTTCCGATGAACTAGGGTTTGAGGGTTCGAACAGCTAGATCATCTGAAACCCTAAAGAGGGGTTTATTTTTACCCTATCTTAAGAGCCTCAGAAGTCGAACTTTCAGGCTTTCCGGTGGAACTTGAACAGAGATTTGGAGCTCAGAGCGAGAGGGTTCGTCTACGAGgcggatcaactg
tggcatttaaagctgtgtttggtttgcaactcatcttcaatacccagatgaaggcttgatcaatgtttgttatttttcttctcaattttgtgtcgcaaacttgccctgtaccattctagtccttcagcattggag
GAAATCATGGATACAGGTGTGAAGTTGGCAGTTGTGGTGAAAGTAATTGGCCGTACTGGATCAAG
AGGTCAAGTTACACAGGTCCGAGTGAAGTTTTTGGATGATCAGAATCGGCTCATCATGAGGAACGTAAAAGGACCTGTCAGAGAGGGTGATGTCCTTACTCTGTTAGAGTCTGAAAGGGAAGCAAGAAGATTGCGGTGATCATGTTCTTCGGATTATAGATTGGAGTTTAAAGTTTCAATGGATTAGCTTTATGGTTTTT
GCTTTTCTTTTCAATGCAATTAGGTCAAGTGTAAGGCACTGAATGGTCTGTGATAATTTTATTTCAATTTGTTTTGGATGATGAAGACCCATCTTACTTTTGAGGAGGGAGTTGGAACAATAACTATGGATTGAAATTCAAATTAATGCAATTGCATATTTTGTGTGGAGAAGCATAACTATATAGTTGTGCTTGTTTTT
ACAAACTTATTCTCTTTCGCTCTTTTACAACTTAAATTAAGTGCATTTTGTTACAGGGTTTGT




Intron 6 GTGGATCAAC ... ATTGTGGCAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A128.791412357
A230.32072290
A331.52189987
A431.511502369
A529.051271352
A629.425102461045
A732.261153116549
A830.041076146462
A927.211351169505
A1028.69743118299



>TRINITY_DN40334_c0_g1_i4 from sample A7 / Example spliced isoform
ATCTTAATGAATCAAAAACAATTTTAGATCACACTCCAAACCAATAAACACACTACATCTAATAAAAAGTCTTTCACAATAATTACTTTTTAAAAAACTAATAAAAAAAGGATGTGTAATTTAGACCATCGATTTAACGGACGGTTCCGATGAACTAGGGTTTGAGGGTTCGAACAGCTAGATCATCTGAAACCCTAAAG
AGGGGTTTATTTTTACCCTATCTTAAGAGCCTCAGAAGTCGAACTTTCAGGCTTTCCGGTGGAACTTGAACAGAGATTTGGAGCTCAGAGCGAGAGGGTTCGTCTACGAGGAAATCATGGATACAGGTGTGAAGTTGGCAGTTGTGGTGAAAGTAATTGGCCGTACTGGATCAAGAGGTCAAGTTACACAGGTCCGAGTG
AAGTTTTTGGATGATCAGAATCGGCTCATCATGAGGAACGTAAAAGGACCTGTCAGAGAGGGTGATGTCCTTACTCTGTTAGAGTCTGAAAGGGAAGCAAGAAGATTGCGGTGATCATGTTCTTCGGATTATAGATTGGAGTTTAAAGTTTCAATGGATTAGCTTTATGGTTTTTGCTTTTCTTTTCAATGCAATTAGGT
CAAGTGTAAGGCACTGAATGGTCTGTGATAATTTTATTTCAATTTGTTTTGGATGATGAAGACCCATCTTACTTTTGAGGAGGGAGTTGGAACAATAACTATGGATTGAAATTCAAATTAATGCAATTGCATATTTTGTGTGGAGAAGCATAACTATATAGTTGTGCTTGTTTTTACAAACTTATTCTCTTTCGCTCTTT
TACAACTTAAATTAAGTGCATTTTGTTACAGGGCA


>TRINITY_DN40334_c0_g1_i9 from sample A7 / Example unspliced isoform:
ATCTTAATGAATCAAAAACAATTTTAGATCACACTCCAAACCAATAAACACACTACATCTAATAAAAAGTCTTTCACAATAATTACTTTTTAAAAAACTAATAAAAAAAGGATGTGTAATTTAGACCATCGATTTAACGGACGGTTCCGATGAACTAGGGTTTGAGGGTTCGAACAGCTAGATCATCTGAAACCCTAAAG
AGGGGTTTATTTTTACCCTATCTTAAGAGCCTCAGAAGTCGAACTTTCAGGCTTTCCGGTGGAACTTGAACAGAGATTTGGAGCTCAGAGCGAGAGGGTTCGTCTACGAGgtggatcaactgtggcatttaagctgtgtttggtttgcaactcatcttcaatacccagatgaaggcttgatcaatgtttgttatttttct
tctcaattttgtgttgcaaacttgccctgccctgtaccattctagttcttcagcattggaggcggatcaactgtggcatttaaagctgtgtttggtttgcaactcatcttcaatacccagatgaaggcttgatcaatgtttgttatttttcttctcaattttgtgtcgcaaacttgccctgtaccattctagtccttcag
cattggaggcggtgcttaattcaaggatttgcctcttaattgtggcag
GAAATCATGGATACAGGTGTGAAGTTGGCAGTTGTGGTGAAAGTAATTGGCCGTACTGGATCAAGAGGTCAAGTTACACAGGTCCGAGTGAAGTTTTTGGATGATCAGAATCGGCTCATCATGAGGAACGTAAAAGGACCTGTCAGAGAGGG
TGATGTCCTTACTCTGTTAGAGTCTGAAAGGGAAGCAAGAAGATTGCGGTGATCATGTTCTTCGGATTATAGATTGGAGTTTAAAGTTTCAATGGATTAGCTTTATGGTTTTTGCTTTTCTTTTCAATGCAATTAGGTCAAGTGTAAGGCACTGAATGGTCTGTGATAATTTTATTTCAATTTGTTTTGGATGATGAAGA
CCCATCTTACTTTTGAGGAGGGAGTTGGAACAATAACTATGGATTGAAATTCAAATTAATGCAATTGCATATTTTGTGTGGAGAAGCATAACTATATAGTTGTGCTTGTTTTTACAAACTTATTCTCTTTCGCTCTTTTACAACTTAAATTAAGTGCATTTTGTTACAGGGCA