sp|Q00763|COMT1_POPTM ----> Caffeic acid 3-O-methyltransferase 1
Intron 1 GTAAATCCGA ... GTTTGTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 12.32 | 131.8 | 19.3 | 7 |
| A2 | 18.33 | 85 | 20.7 | 5.7 |
| A3 | 10.92 | 143.8 | 18.3 | 4.3 |
| A4 | 5.53 | 79.3 | 4.7 | 2.2 |
| A5 | 12.06 | 50.7 | 7.3 | 1 |
| A6 | 13.51 | 447 | 73.7 | 15.3 |
| A7 | 12.72 | 653.3 | 101 | 14 |
| A8 | 11.57 | 513.3 | 70.3 | 16.3 |
| A9 | 11.08 | 646.7 | 83.7 | 25.8 |
| A10 | 13.34 | 661.3 | 108 | 16.2 |
>TRINITY_DN114923_c0_g1_i1 from sample A1 / Example spliced isoformCGGAAAGATCTATTGCTGGAAAGGAGGAGAATTTGTCGACTGAGGTGATAAAAGCCCCGTACCCCAGAATCATTTTATGCTCACAATTTTCTGCTCCGCCTTTTCTGTGTATAGAATTCTTTGTAAACCTGCATGCGCGACGCGGGGAGGATTCGAAATGGGATCGGCTGCTGAAAACTCAGAGATGAATTCAAAGATTG
TGAATGAAGATGAATGGCTTCTGGGCATGGAGCTCGGAAATTTCTCCTGCCTTCCCATGGCTATGAAGGCAGCCATCGAACTCGATGTTCTTCAGATCATAGCAAATGCCGGCAATGGCGTCCAACTCTCGCCCAGGCAAATCGTTGCCCACATTCCGACGACGAACCCTGACGCCGCCATTACTCTCGATCGGATCTTG
AGAGTGCTGGCCAGCCATTCGGTTCTGAGCTGCTCTGTAACCACGGACGAGAACGGAAAGGCCGAGAGGCTCTATGGCCTCACTGCACTCTGTAAATATCTTGTCAAGAATCAAGATGGAGTCTCTCTGGCTCCACTGGTGTTGATGAATCAAGATAAGGTGTTGATGGAGTGCTGGTATTATCTCAAGGACGCTGTGCT
TGAAGGGGCCCAGCCATTCACCAAAGCCCATGGAATGAATGCGTTTGAGTACCCAGCTATGGACCAGCGATACAACAGGGTTTTCAACAGGGGAATGTCTGAGCATTCTACCATGTTGATGAACAAGATTCTGGATACTTACCAGGGTTTTAAAGAGGTTCAGGAATTGGTGGATGTGGGAGGAGGAGTTGGGTCGACTC
TCAATCTCATAGTCTCTAAGTATCCCCACATCTCAGGGATCAACTTCGACATGCCCCATGTTGTGGCCGATGCTCCTCACTATCCAGCTCTGAGACATGTGGGTGGAGACATGTTTGACAGCGTACCAACTGGCCAAGCTATTTTCATGAAGGGACCTCACTGTATCTATCAATCTTGTTTGATTGCAGTGGATTTTGCA
TGACTGGGGCGATAGTTATTGCATCACACTTTTGAAGAATTGTCACAAGGCATTGCCAGAAAAAGGGAAGGTTATTGTGGTGGATACCATTCTACCAGTAGCGGCAGAGACATCTCCCTATGCTCGCCAGGGTTTTCATATAGATTTGCTGATGTTGGCATACAATCCAGGGGGCAAGGAGCGCACAGAGCAAGAATTTC
AAGATTTGGCGAAGGAGGCAGGATTTGCAGGTGGTGTTAAACCTGTATGTTGTGTCAATGGAATGTGGGTCATGGAATTTCACAAGTAACTCTCAGATCATGTTGCTTGGTTTATCTGCATTTCATAATCCATTTGGAGACCCTATAGCAATGATTACAATAAAATGTCATATTAATGCCCATGATTCTGAAGTAAACCG
GAGTCCCAACTAAGATTTTCGTTATCTTATCGTTAAGCAACTTGGGTCCTGCTGATTGGATTGGATTTGTAAAGGCAATATAATATGGAGTGGTTTATTT
>TRINITY_DN114923_c0_g1_i3 from sample A1 / Example unspliced isoform:CGGAAAGATCTATTGCTGGAAAGGAGGAGAATTTGTCGACTGAGGTGATAAAAGCCCCGTACCCCAGAATCATTTTATGCTCACAATTTTCTGCTCCGCCTTTTCTGTGTATAGAATTCTTTGTAAACCTGCATGCGCGACGCGGGGAGGATTCGAAATGGGATCGGCTGCTGAAAACTCAGAGATGAATTCAAAGATTG
TGAATGAAGATGAATGGCTTCTGGGCATGGAGCTCGGAAATTTCTCCTGCCTTCCCATGGCTATGAAGGCAGCCATCGAACTCGATGTTCTTCAGATCATAGCAAATGCCGGCAATGGCGTCCAACTCTCGCCCAGGCAAATCGTTGCCCACATTCCGACGACGAACCCTGACGCCGCCATTACTCTCGATCGGATCTTG
AGAGTGCTGGCCAGCCATTCGGTTCTGAGCTGCTCTGTAACCACGGACGAGAACGGAAAGGCCGAGAGGCTCTATGGCCTCACTGCACTCTGTAAATATCTTGTCAAGAATCAAGATGGAGTCTCTCTGGCTCCACTGGTGTTGATGAATCAAGATAAGGTGTTGATGGAGTGCTGGTATTATCTCAAGGACGCTGTGCT
TGAAGGGGCCCAGCCATTCACCAAAGCCCATGGAATGAATGCGTTTGAGTACCCAGCTATGGACCAGCGATACAACAGGGTTTTCAACAGGGGAATGTCTGAGCATTCTACCATGTTGATGAACAAGATTCTGGATACTTACCAGGGTTTTAAAGAGGTTCAGGAATTGGTGGATGTGGGAGGAGGAGTTGGGTCGACTC
TCAATCTCATAGTCTCTAAGTATCCCCACATCTCAGGGATCAACTTCGACATGCCCCATGTTGTGGCCGATGCTCCTCACTATCCAGgtaaatccgaattatccccaaattcaaccattgaaatcaggttgtaatctctgtgaagctgaccaaatctggttaatctgtgtttgttcagCTCTGAGACATGTGGGTGGAGA
CATGTTTGACAGCGTACCAACTGGCCAAGCTATTTTCATGAAGGTATGGCAATGGGCAATGGGTTTCTACTGTTTCTGTTGTTGTTGTTGGGTAGTTTCATATGAAAATTGAAATTTGACCTGGAATTGGATCAATGGACAGGGACCTCACTGTATCTATCAATCTTGTTTGATTGCAGTGGATTTTGCATGACTGGGGC
GATAGTTATTGCATCACACTTTTGAAGAATTGTCACAAGGCATTGCCAGAAAAAGGGAAGGTTATTGTGGTGGATACCATTCTACCAGTAGCGGCAGAGACATCTCCCTATGCTCGCCAGGGTTTTCATATAGATTTGCTGATGTTGGCATACAATCCAGGGGGCAAGGAGCGCACAGAGCAAGAATTTCAAGATTTGGC
GAAGGAGGCAGGATTTGCAGGTGGTGTTAAACCTGTATGTTGTGTCAATGGAATGTGGGTCATGGAATTTCACAAGTAACTCTCAGATCATGTTGCTTGGTTTATCTGCATTTCATAATCCATTTGGAGACCCTATAGCAATGATTACAATAAAATGTCATATTAATGCCCATGATTCTGAAGTAAACCGGAGTCCCAAC
TAAGATTTTCGTTATCTTATCGTTAAGCAACTTGGGTCCTGCTGATTGGATTGGATTTGTAAAGGCAATATAATATGGAGTGGTTTATTT
Intron 2 GTATGCAATG ... TTGATTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 26.19 | 93 | 31 | 35 |
| A2 | 27.43 | 41 | 13 | 18 |
| A3 | 22.12 | 88 | 26 | 24 |
| A4 | 24.51 | 77 | 25 | 25 |
| A5 | 26.73 | 37 | 12 | 15 |
| A6 | 21.07 | 369 | 74 | 123 |
| A7 | 21.75 | 464 | 104 | 154 |
| A8 | 20 | 430 | 90 | 125 |
| A9 | 22.68 | 462 | 110 | 161 |
| A10 | 21.75 | 455 | 98 | 155 |
>TRINITY_DN44251_c0_g1_i2 from sample A10 / Example spliced isoformAAGGATTTTTCCGATCCACCCACCTCCACTCACCTTTGCTTCCCGGAAAGATCTATTGCTGGAAAGGAGGAGAATTTGTCGACTGAGGTGATAAAAGCCCCGTACCCCAGAATCATTTTATGCTCACAATTTTCTGCTCCGCCTTTTCTGTGTATAGAATTCTTTGTAAACCTGCATGCGCGACGCGGGGAGGATTCGAA
ATGGGATCGGCTGCTGAAAACTCAGAGATGAATTCAAAGATTGTGAATGAAGATGAATGGCTTCTGGGCATGGAGCTCGGAAATTTCTCCTGCCTTCCCATGGCTATGAAGGCAGCCATCGAACTCGATGTTCTTCAGATCATAGCAAATGCCGGCAATGGCGTCCAACTCTCGCCCAGGCAAATCGTTGCCCACATTCC
GACGACGAACCCTGACGCCGCCATTACTCTCGATCGGATCTTGAGAGTGCTGGCCAGCCATTCGGTTCTGAGCTGCTCTGTAACCACGGACGAGAACGGAAAGGCCGAGAGGCTCTATGGCCTCACTGCACTCTGTAAATATCTTGTCAAGAATCAAGATGGAGTCTCTCTGGCTCCACTGGTGTTGATGAATCAAGATA
AGGTGTTGATGGAGTGCTGGTATTATCTCAAGGACGCTGTGCTTGAAGGGGCCCAGCCATTCACCAAAGCCCATGGAATGAATGCGTTTGAGTACCCAGCTATGGACCAGCGATACAACAGGGTTTTCAACAGGGGAATGTCTGAGCATTCTACCATGTTGATGAACAAGATTCTGGATACTTACCAGGGTTTTAAAGAG
GTTCAGGAATTGGTGGATGTGGGAGGAGGAGTTGGGTCGACTCTGAATCTCATAGTCTCTAAGTATCCCCACATCTCAGGGATCAACTTCGACATGCCCCATGTTGTGGCCGATGCTCCTCACTATCCAGCTCTGAGACATGTGGGTGGAGACATGTTTGACAGCGTACCAACTGGCCAAGCTATTTTCATGAAGTGGAT
TTTGCATGACTGGGGCGATAGTTATTGCATCACACTTTTGAAGAATTGTCACAAGGCATTGCCAGAAAAAGGGAAGGTTATTGTGGTGGATACCATTCTACCAGTAGCGGCAGAGACATCTCCCTATGCTCGCCAGGGTTTTCATATAGATTTGCTGATGTTGGCATACAATCCAGGGGGCAAGGAGCGCACAGAGCAAG
AATTTCAAGATTTGGCGAAGGAGGCAGGATTTGCAGGTGGTGTTAAACCTGTATGTTGTGTCAATGGAATGTGGGTCATGGAATTTCACAAGTAACTCTCAGATCATGTTGCTTGGTTTATCTGCATTTCATAATCCATTTGGAGACCCTATAGCAATGATTACAATAAAATGTCATATTAATGCCCATGATTCTGAAGT
AAACCGGAGTCCCAACTAAGATTTTCGTTATCTTATCGTTAAGCAACTTGGGTCCTGCTGATTGGATTGGATTTGTAAAGGCAATATAATATGGAGTGGGT
>TRINITY_DN44251_c0_g1_i1 from sample A10 / Example unspliced isoform:AAGGATTTTTCCGATCCACCCACCTCCACTCACCTTTGCTTCCCGGAAAGATCTATTGCTGGAAAGGAGGAGAATTTGTCGACTGAGGTGATAAAAGCCCCGTACCCCAGAATCATTTTATGCTCACAATTTTCTGCTCCGCCTTTTCTGTGTATAGAATTCTTTGTAAACCTGCATGCGCGACGCGGGGAGGATTCGAA
ATGGGATCGGCTGCTGAAAACTCAGAGATGAATTCAAAGATTGTGAATGAAGATGAATGGCTTCTGGGCATGGAGCTCGGAAATTTCTCCTGCCTTCCCATGGCTATGAAGGCAGCCATCGAACTCGATGTTCTTCAGATCATAGCAAATGCCGGCAATGGCGTCCAACTCTCGCCCAGGCAAATCGTTGCCCACATTCC
GACGACGAACCCTGACGCCGCCATTACTCTCGATCGGATCTTGAGAGTGCTGGCCAGCCATTCGGTTCTGAGCTGCTCTGTAACCACGGACGAGAACGGAAAGGCCGAGAGGCTCTATGGCCTCACTGCACTCTGTAAATATCTTGTCAAGAATCAAGATGGAGTCTCTCTGGCTCCACTGGTGTTGATGAATCAAGATA
AGGTGTTGATGGAGTGCTGGTATTATCTCAAGGACGCTGTGCTTGAAGGGGCCCAGCCATTCACCAAAGCCCATGGAATGAATGCGTTTGAGTACCCAGCTATGGACCAGCGATACAACAGGGTTTTCAACAGGGGAATGTCTGAGCATTCTACCATGTTGATGAACAAGATTCTGGATACTTACCAGGGTTTTAAAGAG
GTTCAGGAATTGGTGGATGTGGGAGGAGGAGTTGGGTCGACTCTGAATCTCATAGTCTCTAAGTATCCCCACATCTCAGGGATCAACTTCGACATGCCCCATGTTGTGGCCGATGCTCCTCACTATCCAGCTCTGAGACATGTGGGTGGAGACATGTTTGACAGCGTACCAACTGGCCAAGCTATTTTCATGAAGgtatg
caatgggcaatgggtttctactgtttctgttgttgttgttgggtagtttcatatgaaaattgaaatttgatctggaattggatcaatggacagggacctcactgtatctatcaatcttgtttgattgcagTGGATTTTGCATGACTGGGGCGATAGTTATTGCATCACACTTTTGAAGAATTGTCACAAGGCATTGCCAG
AAAAAGGGAAGGTTATTGTGGTGGATACCATTCTACCAGTAGCGGCAGAGACATCTCCCTATGCTCGCCAGGGTTTTCATATAGATTTGCTGATGTTGGCATACAATCCAGGGGGCAAGGAGCGCACAGAGCAAGAATTTCAAGATTTGGCGAAGGAGGCAGGATTTGCAGGTGGTGTTAAACCTGTATGTTGTGTCAAT
GGAATGTGGGTCATGGAATTTCACAAGTAACTCTCAGATCATGTTGCTTGGTTTATCTGCATTTCATAATCCATTTGGAGACCCTATAGCAATGATTACAATAAAATGTCATATTAATGCCCATGATTCTGAAGTAAACCGGAGTCCCAACTAAGATTTTCGTTATCTTATCGTTAAGCAACTTGGGTCCTGCTGATTGG
ATTGGATTTGTAAAGGCAATATAATATGGAGTGGGT
Intron 3 GTATGCAATG ... CAATGGACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 48.44 | 33 | 31 | 9 |
| A2 | 52 | 12 | 13 | 9 |
| A3 | 50 | 26 | 26 | 3 |
| A4 | 46.3 | 29 | 25 | 4 |
| A5 | 54.55 | 10 | 12 | 3 |
| A6 | 49.33 | 76 | 74 | 13 |
| A7 | 50.98 | 100 | 104 | 16 |
| A8 | 48.13 | 97 | 90 | 7 |
| A9 | 50.93 | 106 | 110 | 23 |
| A10 | 47.34 | 109 | 98 | 17 |
>TRINITY_DN44251_c0_g1_i3 from sample A10 / Example spliced isoformAAGGATTTTTCCGATCCACCCACCTCCACTCACCTTTGCTTCCCGGAAAGATCTATTGCTGGAAAGGAGGAGAATTTGTCGACTGAGGTGATAAAAGCCCCGTACCCCAGAATCATTTTATGCTCACAATTTTCTGCTCCGCCTTTTCTGTGTATAGAATTCTTTGTAAACCTGCATGCGCGACGCGGGGAGGATTCGAA
ATGGGATCGGCTGCTGAAAACTCAGAGATGAATTCAAAGATTGTGAATGAAGATGAATGGCTTCTGGGCATGGAGCTCGGAAATTTCTCCTGCCTTCCCATGGCTATGAAGGCAGCCATCGAACTCGATGTTCTTCAGATCATAGCAAATGCCGGCAATGGCGTCCAACTCTCGCCCAGGCAAATCGTTGCCCACATTCC
GACGACGAACCCTGACGCCGCCATTACTCTCGATCGGATCTTGAGAGTGCTGGCCAGCCATTCGGTTCTGAGCTGCTCTGTAACCACGGACGAGAACGGAAAGGCCGAGAGGCTCTATGGCCTCACTGCACTCTGTAAATATCTTGTCAAGAATCAAGATGGAGTCTCTCTGGCTCCACTGGTGTTGATGAATCAAGATA
AGGTGTTGATGGAGTGCTGGTATTATCTCAAGGACGCTGTGCTTGAAGGGGCCCAGCCATTCACCAAAGCCCATGGAATGAATGCGTTTGAGTACCCAGCTATGGACCAGCGATACAACAGGGTTTTCAACAGGGGAATGTCTGAGCATTCTACCATGTTGATGAACAAGATTCTGGATACTTACCAGGGTTTTAAAGAG
GTTCAGGAATTGGTGGATGTGGGAGGAGGAGTTGGGTCGACTCTGAATCTCATAGTCTCTAAGTATCCCCACATCTCAGGGATCAACTTCGACATGCCCCATGTTGTGGCCGATGCTCCTCACTATCCAGCTCTGAGACATGTGGGTGGAGACATGTTTGACAGCGTACCAACTGGCCAAGCTATTTTCATGAAGGGACC
TCACTGTATCTATCAATCTTGTTTGATTGCAGTGGATTTTGCATGACTGGGGCGATAGTTATTGCATCACACTTTTGAAGAATTGTCACAAGGCATTGCCAGAAAAAGGGAAGGTTATTGTGGTGGATACCATTCTACCAGTAGCGGCAGAGACATCTCCCTATGCTCGCCAGGGTTTTCATATAGATTTGCTGATGTTG
GCATACAATCCAGGGGGCAAGGAGCGCACAGAGCAAGAATTTCAAGATTTGGCGAAGGAGGCAGGATTTGCAGGTGGTGTTAAACCTGTATGTTGTGTCAATGGAATGTGGGTCATGGAATTTCACAAGTAACTCTCAGATCATGTTGCTTGGTTTATCTGCATTTCATAATCCATTTGGAGACCCTATAGCAATGATTA
CAATAAAATGTCATATTAATGCCCATGATTCTGAAGTAAACCGGAGTCCCAACTAAGATTTTCGTTATCTTATCGTTAAGCAACTTGGGTCCTGCTGATTGGATTGGATTTGTAAAGGCAATATAATATGGAGTGGGT
>TRINITY_DN44251_c0_g1_i1 from sample A10 / Example unspliced isoform:AAGGATTTTTCCGATCCACCCACCTCCACTCACCTTTGCTTCCCGGAAAGATCTATTGCTGGAAAGGAGGAGAATTTGTCGACTGAGGTGATAAAAGCCCCGTACCCCAGAATCATTTTATGCTCACAATTTTCTGCTCCGCCTTTTCTGTGTATAGAATTCTTTGTAAACCTGCATGCGCGACGCGGGGAGGATTCGAA
ATGGGATCGGCTGCTGAAAACTCAGAGATGAATTCAAAGATTGTGAATGAAGATGAATGGCTTCTGGGCATGGAGCTCGGAAATTTCTCCTGCCTTCCCATGGCTATGAAGGCAGCCATCGAACTCGATGTTCTTCAGATCATAGCAAATGCCGGCAATGGCGTCCAACTCTCGCCCAGGCAAATCGTTGCCCACATTCC
GACGACGAACCCTGACGCCGCCATTACTCTCGATCGGATCTTGAGAGTGCTGGCCAGCCATTCGGTTCTGAGCTGCTCTGTAACCACGGACGAGAACGGAAAGGCCGAGAGGCTCTATGGCCTCACTGCACTCTGTAAATATCTTGTCAAGAATCAAGATGGAGTCTCTCTGGCTCCACTGGTGTTGATGAATCAAGATA
AGGTGTTGATGGAGTGCTGGTATTATCTCAAGGACGCTGTGCTTGAAGGGGCCCAGCCATTCACCAAAGCCCATGGAATGAATGCGTTTGAGTACCCAGCTATGGACCAGCGATACAACAGGGTTTTCAACAGGGGAATGTCTGAGCATTCTACCATGTTGATGAACAAGATTCTGGATACTTACCAGGGTTTTAAAGAG
GTTCAGGAATTGGTGGATGTGGGAGGAGGAGTTGGGTCGACTCTGAATCTCATAGTCTCTAAGTATCCCCACATCTCAGGGATCAACTTCGACATGCCCCATGTTGTGGCCGATGCTCCTCACTATCCAGCTCTGAGACATGTGGGTGGAGACATGTTTGACAGCGTACCAACTGGCCAAGCTATTTTCATGAAGgtatg
caatgggcaatgggtttctactgtttctgttgttgttgttgggtagtttcatatgaaaattgaaatttgatctggaattggatcaatggacagGGACCTCACTGTATCTATCAATCTTGTTTGATTGCAGTGGATTTTGCATGACTGGGGCGATAGTTATTGCATCACACTTTTGAAGAATTGTCACAAGGCATTGCCAG
AAAAAGGGAAGGTTATTGTGGTGGATACCATTCTACCAGTAGCGGCAGAGACATCTCCCTATGCTCGCCAGGGTTTTCATATAGATTTGCTGATGTTGGCATACAATCCAGGGGGCAAGGAGCGCACAGAGCAAGAATTTCAAGATTTGGCGAAGGAGGCAGGATTTGCAGGTGGTGTTAAACCTGTATGTTGTGTCAAT
GGAATGTGGGTCATGGAATTTCACAAGTAACTCTCAGATCATGTTGCTTGGTTTATCTGCATTTCATAATCCATTTGGAGACCCTATAGCAATGATTACAATAAAATGTCATATTAATGCCCATGATTCTGAAGTAAACCGGAGTCCCAACTAAGATTTTCGTTATCTTATCGTTAAGCAACTTGGGTCCTGCTGATTGG
ATTGGATTTGTAAAGGCAATATAATATGGAGTGGGT
Intron 4 GTATGGCAAT ... CAATGGACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 33.62 | 24.7 | 14 | 9 |
| A2 | 44.71 | 9 | 7 | 9 |
| A3 | 25.57 | 18.3 | 8.7 | 3 |
| A4 | 15.09 | 21 | 8 | 4 |
| A5 | 57.07 | 6.7 | 5.3 | 3 |
| A6 | 35.55 | 52.7 | 28.7 | 13 |
| A7 | 40.75 | 69 | 42.3 | 16 |
| A8 | 27.29 | 68.7 | 32.7 | 7 |
| A9 | 41.42 | 73 | 44.7 | 23 |
| A10 | 23.34 | 76.7 | 34.7 | 17 |
>TRINITY_DN114923_c0_g1_i1 from sample A1 / Example spliced isoformCGGAAAGATCTATTGCTGGAAAGGAGGAGAATTTGTCGACTGAGGTGATAAAAGCCCCGTACCCCAGAATCATTTTATGCTCACAATTTTCTGCTCCGCCTTTTCTGTGTATAGAATTCTTTGTAAACCTGCATGCGCGACGCGGGGAGGATTCGAAATGGGATCGGCTGCTGAAAACTCAGAGATGAATTCAAAGATTG
TGAATGAAGATGAATGGCTTCTGGGCATGGAGCTCGGAAATTTCTCCTGCCTTCCCATGGCTATGAAGGCAGCCATCGAACTCGATGTTCTTCAGATCATAGCAAATGCCGGCAATGGCGTCCAACTCTCGCCCAGGCAAATCGTTGCCCACATTCCGACGACGAACCCTGACGCCGCCATTACTCTCGATCGGATCTTG
AGAGTGCTGGCCAGCCATTCGGTTCTGAGCTGCTCTGTAACCACGGACGAGAACGGAAAGGCCGAGAGGCTCTATGGCCTCACTGCACTCTGTAAATATCTTGTCAAGAATCAAGATGGAGTCTCTCTGGCTCCACTGGTGTTGATGAATCAAGATAAGGTGTTGATGGAGTGCTGGTATTATCTCAAGGACGCTGTGCT
TGAAGGGGCCCAGCCATTCACCAAAGCCCATGGAATGAATGCGTTTGAGTACCCAGCTATGGACCAGCGATACAACAGGGTTTTCAACAGGGGAATGTCTGAGCATTCTACCATGTTGATGAACAAGATTCTGGATACTTACCAGGGTTTTAAAGAGGTTCAGGAATTGGTGGATGTGGGAGGAGGAGTTGGGTCGACTC
TCAATCTCATAGTCTCTAAGTATCCCCACATCTCAGGGATCAACTTCGACATGCCCCATGTTGTGGCCGATGCTCCTCACTATCCAGCTCTGAGACATGTGGGTGGAGACATGTTTGACAGCGTACCAACTGGCCAAGCTATTTTCATGAAGGGACCTCACTGTATCTATCAATCTTGTTTGATTGCAGTGGATTTTGCA
TGACTGGGGCGATAGTTATTGCATCACACTTTTGAAGAATTGTCACAAGGCATTGCCAGAAAAAGGGAAGGTTATTGTGGTGGATACCATTCTACCAGTAGCGGCAGAGACATCTCCCTATGCTCGCCAGGGTTTTCATATAGATTTGCTGATGTTGGCATACAATCCAGGGGGCAAGGAGCGCACAGAGCAAGAATTTC
AAGATTTGGCGAAGGAGGCAGGATTTGCAGGTGGTGTTAAACCTGTATGTTGTGTCAATGGAATGTGGGTCATGGAATTTCACAAGTAACTCTCAGATCATGTTGCTTGGTTTATCTGCATTTCATAATCCATTTGGAGACCCTATAGCAATGATTACAATAAAATGTCATATTAATGCCCATGATTCTGAAGTAAACCG
GAGTCCCAACTAAGATTTTCGTTATCTTATCGTTAAGCAACTTGGGTCCTGCTGATTGGATTGGATTTGTAAAGGCAATATAATATGGAGTGGTTTATTT
>TRINITY_DN114923_c0_g1_i3 from sample A1 / Example unspliced isoform:CGGAAAGATCTATTGCTGGAAAGGAGGAGAATTTGTCGACTGAGGTGATAAAAGCCCCGTACCCCAGAATCATTTTATGCTCACAATTTTCTGCTCCGCCTTTTCTGTGTATAGAATTCTTTGTAAACCTGCATGCGCGACGCGGGGAGGATTCGAAATGGGATCGGCTGCTGAAAACTCAGAGATGAATTCAAAGATTG
TGAATGAAGATGAATGGCTTCTGGGCATGGAGCTCGGAAATTTCTCCTGCCTTCCCATGGCTATGAAGGCAGCCATCGAACTCGATGTTCTTCAGATCATAGCAAATGCCGGCAATGGCGTCCAACTCTCGCCCAGGCAAATCGTTGCCCACATTCCGACGACGAACCCTGACGCCGCCATTACTCTCGATCGGATCTTG
AGAGTGCTGGCCAGCCATTCGGTTCTGAGCTGCTCTGTAACCACGGACGAGAACGGAAAGGCCGAGAGGCTCTATGGCCTCACTGCACTCTGTAAATATCTTGTCAAGAATCAAGATGGAGTCTCTCTGGCTCCACTGGTGTTGATGAATCAAGATAAGGTGTTGATGGAGTGCTGGTATTATCTCAAGGACGCTGTGCT
TGAAGGGGCCCAGCCATTCACCAAAGCCCATGGAATGAATGCGTTTGAGTACCCAGCTATGGACCAGCGATACAACAGGGTTTTCAACAGGGGAATGTCTGAGCATTCTACCATGTTGATGAACAAGATTCTGGATACTTACCAGGGTTTTAAAGAGGTTCAGGAATTGGTGGATGTGGGAGGAGGAGTTGGGTCGACTC
TCAATCTCATAGTCTCTAAGTATCCCCACATCTCAGGGATCAACTTCGACATGCCCCATGTTGTGGCCGATGCTCCTCACTATCCAGGTAAATCCGAATTATCCCCAAATTCAACCATTGAAATCAGGTTGTAATCTCTGTGAAGCTGACCAAATCTGGTTAATCTGTGTTTGTTCAGCTCTGAGACATGTGGGTGGAGA
CATGTTTGACAGCGTACCAACTGGCCAAGCTATTTTCATGAAGgtatggcaatgggcaatgggtttctactgtttctgttgttgttgttgggtagtttcatatgaaaattgaaatttgacctggaattggatcaatggacagGGACCTCACTGTATCTATCAATCTTGTTTGATTGCAGTGGATTTTGCATGACTGGGGC
GATAGTTATTGCATCACACTTTTGAAGAATTGTCACAAGGCATTGCCAGAAAAAGGGAAGGTTATTGTGGTGGATACCATTCTACCAGTAGCGGCAGAGACATCTCCCTATGCTCGCCAGGGTTTTCATATAGATTTGCTGATGTTGGCATACAATCCAGGGGGCAAGGAGCGCACAGAGCAAGAATTTCAAGATTTGGC
GAAGGAGGCAGGATTTGCAGGTGGTGTTAAACCTGTATGTTGTGTCAATGGAATGTGGGTCATGGAATTTCACAAGTAACTCTCAGATCATGTTGCTTGGTTTATCTGCATTTCATAATCCATTTGGAGACCCTATAGCAATGATTACAATAAAATGTCATATTAATGCCCATGATTCTGAAGTAAACCGGAGTCCCAAC
TAAGATTTTCGTTATCTTATCGTTAAGCAACTTGGGTCCTGCTGATTGGATTGGATTTGTAAAGGCAATATAATATGGAGTGGTTTATTT
Intron 5 GTATGGCAAT ... TTGATTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 28.58 | 88.8 | 18 | 35 |
| A2 | 31.38 | 39.6 | 8.1 | 18 |
| A3 | 22.32 | 84.5 | 12.4 | 24 |
| A4 | 25.73 | 73.4 | 12 | 25 |
| A5 | 29.93 | 35.5 | 7 | 15 |
| A6 | 25.68 | 358 | 39.5 | 123 |
| A7 | 25.65 | 449.4 | 56.6 | 154 |
| A8 | 23.24 | 415.9 | 45.9 | 125 |
| A9 | 26.63 | 446.8 | 60 | 161 |
| A10 | 26.16 | 440.5 | 50.1 | 155 |
>TRINITY_DN114923_c0_g1_i2 from sample A1 / Example spliced isoformCGGAAAGATCTATTGCTGGAAAGGAGGAGAATTTGTCGACTGAGGTGATAAAAGCCCCGTACCCCAGAATCATTTTATGCTCACAATTTTCTGCTCCGCCTTTTCTGTGTATAGAATTCTTTGTAAACCTGCATGCGCGACGCGGGGAGGATTCGAAATGGGATCGGCTGCTGAAAACTCAGAGATGAATTCAAAGATTG
TGAATGAAGATGAATGGCTTCTGGGCATGGAGCTCGGAAATTTCTCCTGCCTTCCCATGGCTATGAAGGCAGCCATCGAACTCGATGTTCTTCAGATCATAGCAAATGCCGGCAATGGCGTCCAACTCTCGCCCAGGCAAATCGTTGCCCACATTCCGACGACGAACCCTGACGCCGCCATTACTCTCGATCGGATCTTG
AGAGTGCTGGCCAGCCATTCGGTTCTGAGCTGCTCTGTAACCACGGACGAGAACGGAAAGGCCGAGAGGCTCTATGGCCTCACTGCACTCTGTAAATATCTTGTCAAGAATCAAGATGGAGTCTCTCTGGCTCCACTGGTGTTGATGAATCAAGATAAGGTGTTGATGGAGTGCTGGTATTATCTCAAGGACGCTGTGCT
TGAAGGGGCCCAGCCATTCACCAAAGCCCATGGAATGAATGCGTTTGAGTACCCAGCTATGGACCAGCGATACAACAGGGTTTTCAACAGGGGAATGTCTGAGCATTCTACCATGTTGATGAACAAGATTCTGGATACTTACCAGGGTTTTAAAGAGGTTCAGGAATTGGTGGATGTGGGAGGAGGAGTTGGGTCGACTC
TCAATCTCATAGTCTCTAAGTATCCCCACATCTCAGGGATCAACTTCGACATGCCCCATGTTGTGGCCGATGCTCCTCACTATCCAGCTCTGAGACATGTGGGTGGAGACATGTTTGACAGCGTACCAACTGGCCAAGCTATTTTCATGAAGTGGATTTTGCATGACTGGGGCGATAGTTATTGCATCACACTTTTGAAG
AATTGTCACAAGGCATTGCCAGAAAAAGGGAAGGTTATTGTGGTGGATACCATTCTACCAGTAGCGGCAGAGACATCTCCCTATGCTCGCCAGGGTTTTCATATAGATTTGCTGATGTTGGCATACAATCCAGGGGGCAAGGAGCGCACAGAGCAAGAATTTCAAGATTTGGCGAAGGAGGCAGGATTTGCAGGTGGTGT
TAAACCTGTATGTTGTGTCAATGGAATGTGGGTCATGGAATTTCACAAGTAACTCTCAGATCATGTTGCTTGGTTTATCTGCATTTCATAATCCATTTGGAGACCCTATAGCAATGATTACAATAAAATGTCATATTAATGCCCATGATTCTGAAGTAAACCGGAGTCCCAACTAAGATTTTCGTTATCTTATCGTTAAG
CAACTTGGGTCCTGCTGATTGGATTGGATTTGTAAAGGCAATATAATATGGAGTGGTTTATTT
>TRINITY_DN114923_c0_g1_i3 from sample A1 / Example unspliced isoform:CGGAAAGATCTATTGCTGGAAAGGAGGAGAATTTGTCGACTGAGGTGATAAAAGCCCCGTACCCCAGAATCATTTTATGCTCACAATTTTCTGCTCCGCCTTTTCTGTGTATAGAATTCTTTGTAAACCTGCATGCGCGACGCGGGGAGGATTCGAAATGGGATCGGCTGCTGAAAACTCAGAGATGAATTCAAAGATTG
TGAATGAAGATGAATGGCTTCTGGGCATGGAGCTCGGAAATTTCTCCTGCCTTCCCATGGCTATGAAGGCAGCCATCGAACTCGATGTTCTTCAGATCATAGCAAATGCCGGCAATGGCGTCCAACTCTCGCCCAGGCAAATCGTTGCCCACATTCCGACGACGAACCCTGACGCCGCCATTACTCTCGATCGGATCTTG
AGAGTGCTGGCCAGCCATTCGGTTCTGAGCTGCTCTGTAACCACGGACGAGAACGGAAAGGCCGAGAGGCTCTATGGCCTCACTGCACTCTGTAAATATCTTGTCAAGAATCAAGATGGAGTCTCTCTGGCTCCACTGGTGTTGATGAATCAAGATAAGGTGTTGATGGAGTGCTGGTATTATCTCAAGGACGCTGTGCT
TGAAGGGGCCCAGCCATTCACCAAAGCCCATGGAATGAATGCGTTTGAGTACCCAGCTATGGACCAGCGATACAACAGGGTTTTCAACAGGGGAATGTCTGAGCATTCTACCATGTTGATGAACAAGATTCTGGATACTTACCAGGGTTTTAAAGAGGTTCAGGAATTGGTGGATGTGGGAGGAGGAGTTGGGTCGACTC
TCAATCTCATAGTCTCTAAGTATCCCCACATCTCAGGGATCAACTTCGACATGCCCCATGTTGTGGCCGATGCTCCTCACTATCCAGGTAAATCCGAATTATCCCCAAATTCAACCATTGAAATCAGGTTGTAATCTCTGTGAAGCTGACCAAATCTGGTTAATCTGTGTTTGTTCAGCTCTGAGACATGTGGGTGGAGA
CATGTTTGACAGCGTACCAACTGGCCAAGCTATTTTCATGAAGgtatggcaatgggcaatgggtttctactgtttctgttgttgttgttgggtagtttcatatgaaaattgaaatttgacctggaattggatcaatggacagggacctcactgtatctatcaatcttgtttgattgcagTGGATTTTGCATGACTGGGGC
GATAGTTATTGCATCACACTTTTGAAGAATTGTCACAAGGCATTGCCAGAAAAAGGGAAGGTTATTGTGGTGGATACCATTCTACCAGTAGCGGCAGAGACATCTCCCTATGCTCGCCAGGGTTTTCATATAGATTTGCTGATGTTGGCATACAATCCAGGGGGCAAGGAGCGCACAGAGCAAGAATTTCAAGATTTGGC
GAAGGAGGCAGGATTTGCAGGTGGTGTTAAACCTGTATGTTGTGTCAATGGAATGTGGGTCATGGAATTTCACAAGTAACTCTCAGATCATGTTGCTTGGTTTATCTGCATTTCATAATCCATTTGGAGACCCTATAGCAATGATTACAATAAAATGTCATATTAATGCCCATGATTCTGAAGTAAACCGGAGTCCCAAC
TAAGATTTTCGTTATCTTATCGTTAAGCAACTTGGGTCCTGCTGATTGGATTGGATTTGTAAAGGCAATATAATATGGAGTGGTTTATTT