sp|Q93ZX7|GAUT4_ARATH ----> Probable galacturonosyltransferase 4
Intron 1 GTAGCTTAGT ... CTTGGAAAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 43.48 | 16.5 | 17.4 | 8 |
| A2 | 62.04 | 8.8 | 11.8 | 17 |
| A3 | 49.06 | 9 | 10.5 | 7 |
| A4 | 47.32 | 16.3 | 11.2 | 18 |
| A5 | 61.57 | 5.8 | 13.3 | 5 |
| A6 | 51.28 | 0.3 | 0.6 | 0 |
| A7 | 64.31 | 3.8 | 10.1 | 3 |
| A8 | 90.26 | 0.3 | 3.6 | 0 |
| A9 | 50.02 | 8.5 | 7 | 10 |
| A10 | 44.83 | 14 | 12.5 | 9 |
>TRINITY_DN114067_c0_g1_i9 from sample A1 / Example spliced isoformTGCCAATTTTCAAGTATTTGACGCACTGATTTGCATTTCCATGATGAGGTACCGGACCCAGGAAACTGTAGACTATAAATACTCGGATAATGGGATGTCTTCTAATGCGGCAAAGGTATCTGTTAAAAGTCAATTGCGATGGAGAACCACGGTTTGGTTTTAGGTTTCGGATTGTAGCTTTGAAGGCCACGATTTTGTGA
AATCCAAGCTATTTTAGCAAGATTTGGCATCGTTGAATCAAAGTGGCCCCTGCACAAGAATTGCTTTGCTCCAATGGCAACATAAATCAGTCGGCTCATTATTTTGATTTTGTGTAAAGGCAAAGTGACTATTTAGGGCCAAAATACCGAATGAAGGATTTCTCCGCGACAAGCTTTAGGGCTTTGATTTCGATCTGCAC
CTGTACAGTTAAAGAGAGGGCCGAACTTTGAAGCCTACTGCTCTTACGAAGTATCTTATTAATTGTTTGGAGTTTGACAATGCCTCCCGTTAGAGGGGAAGGGCATGCGTCCCGTCACTTTGTGGGAGGCGGAAGATGCTATAGACCTGTCATTCTATTGCTCTGCTTAACAGTTTCCGCGCCAATTATCCTTTTTACAG
GCCGATTGCACAGTTTTGGCTCTTCAGTTGGGAAGAAGGATTTCATCGATGATCCATCTTCGAGCATTAGTTTTGTCAGCGATTCGAGAAAGTTAAATGCCCTTCATCAGGAACCAGGGATCTTTCTCAGGGAGCCCATTAGAGAAGTTTACAAGGAGGAAACTGATACTCCAGTTTCACATCATCTTTTAAACAAGGAA
CAGTCGGAACCAGTTAATAATGCTACAGAAAATAAAAGAAGTTTTGAACAAGATTCAAGTGAAATTGAGACGGAGGATACTTCTTCAATAAATGAAGAGAGAGAAATTGAGAGTCTTACTTCTAGAAAAGACTTAACATCTGCAATCAGGGAACAATCTGAAGCCATTGAAAATGCTACACAAAATAAAAGAAGTTTCAA
AGAAGATTCAAGTGAATTTGATCCTGAGGGTATTTCCTCAATCCATGAAGAGGGAGAAACTGAGAGATTTACTTCTGAAGAGGTAACATCTTTAAACATGGAACGGTCTGAACCCATTGAAAACGCTACACAGAATAGAAGAAGTTTCAAAGAAGATTCAAGTGAAATTGATACTGGGGATACTTCCCCAATTCATGAAG
GGGGACAAACTGAAATGATTACTGCTAGAAAAGAGGAACATGCAAAGCTAGAACTCCCAGGAGTAACAAGGCCCAGAGAGATAAGTTCAGGAGGATCCGAAAAACGTAATGTCCCAAACAAACAGAAAGTGGTTTCAGATGCCCTGGTGAGGCAGATGCGAGATCAACTAATTAGGGCCAGGGTTTATCTAAACTTTGCC
CCTATTCGGAATAATGCTCACTTTGTACGGGAGCTGAGGCAGAGGATGAAGGAAGTCCAGCGATCCTTGGGTGAAGCAAGCAAGGATTCTGACCTGCCTAGAAGTGCTTCTGAAAGAATGAAGACCATGGAACGTACTTTGACTAGAGGCATGCAACTGTATAATGACTGTTCTGCTATGGTAAAGAAGCTCCGAGCTAT
GGTGCACCTTGCAGAAGAACAACTCCGAGTGCACAAGAGGCAGAGTACATATTTGACTCAGCTAGCTGCAAAAACCCTTCCTAAAGGCCTTCATTGCCTCCCTATGCGCTTGGCTACAGAGTATTATGCCTTAAATTCTAGTGAGCAAGACTTTCTACACAAGGAAAACTTAGATGACAAAACTCTTTACCATTATGCAA
TATTTTCTGACAATGTTCTTGCAACAGCAGTGGTTGTGAACTCTACCGTATTTCGTGCTAAGGAGCCAGAAAAGCATGTATTTCATTTGGTCACTGATAAGCTAAACTATGCAGCAATGAAAATGTGGTTCTTGGCTAACCCCCCTGGGAAAGCAACAATCCAGGTTCAGACCATCGATGATTTTACATGGCTAAATTCT
AGCTATAGCCCAGTTTTGAGACAGCTTGGCTCTGCATCTATAAAAGATTATTATTTTAGGACGCATCGCACCAATGCAGATTCCAATTTGAAGTATCGGAATCCGAAGTATCTATCTATCCTTAACCATCTTCGCTTCTACCTCCCTGAGATCTTTCCAGAGCTCGATAAAGTCCTCTTCCTGGATGATGATATTGTGGT
GCAAAAGGATCTGACAGCACTTTGGAATATTGATATGCAAGGGCGGGTAAATGGTGCGGTGGAAACCTGTGGAGAAAGCTTTCATAGGTTTGACAAATATCTCAATTTTTCACACGAACTCATTGCAAAGAACTTTGATCCAAACGCTTGTGGATGGGCATATGGAATGAATATATTTGATCTTGATGAATGGAGGAAGC
GGGGAATAACAGGGATTTACCATCAATGGCAAAACCTAAACATAGATAGACAGTTATGGAAGCTGGGTACCTTGCCTCCTGGGCTGATCACTTTCTACAACCTGACATTCGTCTTGGATAAATCTTGGCATGTTCTGGGTCTTGGATATAACCCTAATGTTGATTCGACTGAAATTGAAAGAGCAGCAGTGATACATTAC
AACGGCAATATGAAACCATGGCTGGACATAGCCATCCCCAAATACAGGCATTACTGGACAAAGTATGTGAAATATGATCAAATCTTCTTGCAGCTATGCAATATCAGTGAATAGAGAACATAGCCATCCCAAGTACAGGCATTACTGGACAAAGTATGTGAAATATGATCACATCTTCTTGCAGCTGTGCAATATCAATG
AATAGATTTACTAGAAGATTGTTTATTTTTTCATGAACTTGCACCAAGGGAACCTGTGCAAGTCCCTTTGTTGGTTGCCACAAGAAGTGAAAGGTTAACCAAATATGGTAAAATCGCAGCTCCATTGCTCTGTTGGTGTACTTAGGAGGACATTCAGATGTGAATCTGGGTAGTCTGGCGAGTGGACTCTCACTCACCCT
AACTGCAATTTGTTACACAGTGAAAAGTGGCAATCTTGGAAATGTATACTTTTTTTTGCAGACATTAAAAATGGGTATTTAA
>TRINITY_DN114067_c0_g1_i5 from sample A1 / Example unspliced isoform:TTTAATCTGAATGTTCCGTATAAGGCCGTGATATGTAAAATGTGGACTTGTGCTGATTATTCTATGTGTGATCTGGTGATGTGCAGCACTGATTTGCATTTCCATGATGAGGTACCGGACCCAGGAAACTGTAGACTATAAATACTCGGATAATGGGATGTCTTCTAATGCGGCAAAGgtagcttagttttctttacttt
ctagcccgtggctacaaagctctgggctgatcttccgctagattgcgtttggaatcttcttttgcggcatttctattagtagcagacgattaattcaagcatcagctgttatttcgagctttttggagtgcattaaagcttgtgtcttgcttggaaaagGTATCTGTTAAAAGTCAATTGCGATGGAGAACCACGGTTTG
GTTTTAGGTTTCGGATTGTAGCTTTGAAGGCCACGATTTTGTGAAATCCAAGCTATTTTAGCAAGATTTGGCATCGTTGAATCAAAGTGGCCCCTGCACAAGAATTGCTTTGCTCCAATGGCAACATAAATCAGTCGGCTCATTATTTTGATTTTGTGTAAAGGCAAAGTGACTATTTAGGGCCAAAATACCGAATGAAG
GATTTCTCCGCGACAAGCTTTAGGGCTTTGATTTCGATCTGCACCTGTACAGTTAAAGAGAGGGCCGAACTTTGAAGCCTACTGCTCTTACGAAGTATCTTATTAATTGTTTGGAGTTTGACAATGCCTCCCGTTAGAGGGGAAGGGCATGCGTCCCGTCACTTTGTGGGAGGCGGAAGATGCTATAGACCTGTCATTCT
ATTGCTCTGCTTAACAGTTTCCGCGCCAATTATCCTTTTTACAGGCCGATTGCACAGTTTTGGCTCTTCAGTTGGGAAGAAGGATTTCATCGATGATCCATCTTCGAGCATTAGTTTTGTCAGCGATTCGAGAAAGTTAAATGCCCTTCATCAGGAACCAGGGATCTTTCTCAGGGAGCCCATTAGAGAAGTTTACAAGG
AGGAAACTGATACTCCAGTTTCACATCATCTTTTAAACAAGGAACAGTCGGAACCAGTTAATAATGCTACAGAAAATAAAAGAAGTTTTGAACAAGATTCAAGTGAAATTGAGACGGAGGATACTTCTTCAATAAATGAAGAGAGAGAAATTGAGAGTCTTACTTCTAGAAAAGACTTAACATCTGCAATCAGGGAACAA
TCTGAAGCCATTGAAAATGCTACACAAAATAAAAGAAGTTTCAAAGAAGATTCAAGTGAATTTGATCCTGAGGGTATTTCCTCAATCCATGAAGAGGGAGAAACTGAGAGATTTACTTCTGAAGAGGTAACATCTTTAAACATGGAACGGTCTGAACCCATTGAAAACGCTACACAGAATAGAAGAAGTTTCAAAGAAGA
TTCAAGTGAAATTGATACTGGGGATACTTCCCCAATTCATGAAGGGGGACAAACTGAAATGATTACTGCTAGAAAAGAGGAACATGCAAAGCTAGAACTCCCAGGAGTAACAAGGCCCAGAGAGATAAGTTCAGGAGGATCCGAAAAACGTAATGTCCCAAACAAACAGAAAGTGGTTTCAGATGCCCTGGTGAGGCAGA
TGCGAGATCAACTAATTAGGGCCAGGGTTTATCTAAACTTTGCCCCTATTCGGAATAATGCTCACTTTGTACGGGAGCTGAGGCAGAGGATGAAGGAAGTCCAGCGATCCTTGGGTGAAGCAAGCAAGGATTCTGACCTGCCTAGAAGTGCTTCTGAAAGAATGAAGACCATGGAACGTACTTTGACTAGAGGCATGCAA
CTGTATAATGACTGTTCTGCTATGGTAAAGAAGCTCCGAGCTATGGTGCACCTTGCAGAAGAACAACTCCGAGTGCACAAGAGGCAGAGTACATATTTGACTCAGCTAGCTGCAAAAACCCTTCCTAAAGGCCTTCATTGCCTCCCTATGCGCTTGGCTACAGAGTATTATGCCTTAAATTCTAGTGAGCAAGACTTTCT
ACACAAGGAAAACTTAGATGACAAAACTCTTTACCATTATGCAATATTTTCTGACAATGTTCTTGCAACAGCAGTGGTTGTGAACTCTACCGTATTTCGTGCTAAGGAGCCAGAAAAGCATGTATTTCATTTGGTCACTGATAAGCTAAACTATGCAGCAATGAAAATGTGGTTCTTGGCTAACCCCCCTGGGAAAGCAA
CAATCCAGGTTCAGACCATCGATGATTTTACATGGCTAAATTCTAGCTATAGCCCAGTTTTGAGACAGCTTGGCTCTGCATCTATAAAAGATTATTATTTTAGGACGCATCGCACCAATGCAGATTCCAATTTGAAGTATCGGAATCCGAAGTATCTATCTATCCTTAACCATCTTCGCTTCTACCTCCCTGAGATCTTT
CCAGAGCTCGATAAAGTCCTCTTCCTGGATGATGATATTGTGGTGCAAAAGGATCTGACAGCACTTTGGAATATTGATATGCAAGGGCGGGTAAATGGTGCGGTGGAAACCTGTGGAGAAAGCTTTCATAGGTTTGACAAATATCTCAATTTTTCACACGAACTCATTGCAAAGAACTTTGATCCAAACGCTTGTGGATG
GGCATATGGAATGAATATATTTGATCTTGATGAATGGAGGAAGCGGGGAATAACAGGGATTTACCATCAATGGCAAAACCTAAACATAGATAGACAGTTATGGAAGCTGGGTACCTTGCCTCCTGGGCTGATCACTTTCTACAACCTGACATTCGTCTTGGATAAATCTTGGCATGTTCTGGGTCTTGGATATAACCCTA
ATGTTGATTCGACTGAAATTGAAAGAGCAGCAGTGATACATTACAACGGCAATATGAAACCATGGCTGGACATAGCCATCCCCAAATACAGGCATTACTGGACAAAGTATGTGAAATATGATCAAATCTTCTTGCAGCTATGCAATATCAGTGAATAGAGAACATAGCCATCCCAAGTACAGGCATTACTGGACAAAGTA
TGTGAAATATGATCACATCTTCTTGCAGCTGTGCAATATCAATGAATAGATTTACTAGAAGATTGTTTATTTTTTCATGAACTTGCACCAAGGGAACCTGTGCAAGTCCCTTTGTTGGTTGCCACAAGAAGTGAAAGGTTAACCAAATATGGTAAAATCGCAGCTCCATTGCTCTGTTGGTGTACTTAGGAGGACATTCA
GATGTGAATCTGGGTAGTCTGGCGAGTGGACTCTCACTCACCCTAACTGCAATTTGTTACACAGTGAAAAGTGGCAATCTTGGAAATGTATACTTTTTTTTGCAGACATTAAAAATGGGTATTTAA
Intron 2 GTAAGTACAT ... TTCATCTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 17.12 | 46 | 11 | 8 |
| A2 | 30.3 | 23 | 6 | 14 |
| A3 | 6.25 | 15 | 0 | 2 |
| A4 | 26.32 | 14 | 2 | 8 |
| A5 | 23.81 | 8 | 2 | 3 |
| A6 | 8.11 | 51 | 3 | 6 |
| A7 | 9.52 | 57 | 7 | 5 |
| A8 | 17.99 | 57 | 12 | 13 |
| A9 | 16.67 | 60 | 4 | 20 |
| A10 | 11.59 | 61 | 5 | 11 |
>TRINITY_DN109387_c0_g1_i6 from sample A2 / Example spliced isoformGCCGTGATATGTAAAATGTGGACTTGTGCTGATTATTCTATGTGTGATCTGGTGATGTGCAGCACTGATTTGCATTTCCATGATGAGGTACCGGACCCAGGAAACTGTAGACTATAAATACTCGGATAATGGGATGTCTTCTAATGCGGCAAAGGTAGCTTAGTTTTCTTTACTTTCTAGCCCGTGGCTACAAAGCTCTG
GGCTGATCTTCCGCTAGATTGCGTTTGGAATCTTCTTTTGCGGCATTTCTATTAGTAGCAGACGATTAATTCAAGCATCAGCTGTTATTTCGAGCTTTTTGGAGTGCATTAAAGCTTGTGTCTTGCTTGGAAAAGGTATCTGTTAAAAGTCAATTGCGATGGAGAACCACGGTTTGGTTTTAGGTTTCGGATTGTAGCTT
TGAAGGCCACGATTTTGTGAAATCCAAGCTATTTTAGCAAGATTTGGCATCGTTGAATCAAAGTGGCCCCTGCACAAGAATTGCTTTGCTCCAATGGCAACATAAATCAGTCGGCTCATTATTTTGATTTTGTGTAAAGGCAAAGTGACTATTTAGGGCCAAAATACCGAATGAAGGATTTCTCCGCGACAAGCTTTAGG
GCTTTGATTTCGATCTGCACCTGTACAGTTAAAGAGAGGGCCGAACTTTGAAGCCTACTGCTCTTACGAAGTATCTTATTAATTGTTTGGAGTTTGACAATGCCTCCCGTTAGAGGGGAAGGGCATGCGTCCCGTCACTTTGTGGGAGGCGGAAGATGCTATAGACCTGTCATTCTATTGCTCTGCTTAACAGTTTCCGC
GCCAATTATCCTTTTTACAGGCCGATTGCACAGTTTTGGCTCTTCAGTTGGGAAGAAGGATTTCATCGATGATCCATCTTCGAGCATTAGTTTTGTCAGCGATTCGAGAAAGTTAAATGCCCTTCATCAGGAACCAGGGATCTTTCTCAGGGAGCCCATTAGAGAAGTTTACAAGGAGGAAACTGATACTCCAGTTTCAC
ATCATCTTTTAAACAAGGAACAGTCGGAACCAGTTAATAATGCTACAGAAAATAAAAGAAGTTTTGAACAAGATTCAAGTGAAATTGAGACGGAGGATACTTCTTCAATAAATGAAGAGAGAGAAATTGAGAGTCTTACTTCTAGAAAAGACTTAACATCTGCAATCAGGGAACAATCTGAAGCCATTGAAAATGCTACA
CAAAATAAAAGAAGTTTCAAAGAAGATTCAAGTGAATTTGATCCTGAGGGTATTTCCTCAATCCATGAAGAGGGAGAAACTGAGAGATTTACTTCTGAAGAGGTAACATCTGTAAACATGGAACGGTCTGAACCCATTGAAAACGCTACACAGAATAGAAGAAGTTTCAAAGAAGATTCAAGTGAAATTGATACTGGGGA
TACTTCCCCAATTCATGAAGGGGGACAAACTGAAATGATTACTGCTAGAAAAGAGGAACATGCAAAGCTAGAACTCCCAGGAGTAACAAGGCCCAGAGAGATAAGTTCAGGAGGATCCGAAAAACGTAATGTCCCAAACAAACAGAAAGTGGTTTCAGATGCCCTGGTGAGGCAGATGCGAGATCAACTAATTAGGGCCA
GGGTTTATCTAAACTTTGCCCCTATTCGGAATAATGCTCACTTTGTACGGGAGCTGAGGCAGAGGATGAAGGAAGTCCAGCGATCCTTGGGTGAAGCAAGCAAGGATTCTGACCTGCCTAGAAGTGCTTCTGAAAGAATGAAGACCATGGAACGTACTTTGACTAGAGGCATGCAACTGTATAATGACTGTTCTGCTATG
GTAAAGAAGCTCCGAGCTATGGTGCACCTTGCAGAAGAACAACTCCGAGTGCACAAGAGGCAGAGTACATATTTGACTCAGCTAGCTGCAAAAACCCTTCCTAAAGGCCTTCATTGCCTCCCTATGCGCTTGGCTACAGAGTATTATGCCTTAAATTCTAGTGAGCAAGACTTTCTACACAAGGAAAACTTAGATGACAA
AACTCTTTACCATTATGCAATATTTTCTGACAATGTTCTTGCAACAGCAGTGGTTGTGAACTCTACCGTATTTCGTGCTAAGGAGCCAGAAAAGCATGTATTTCATTTGGTCACTGATAAGCTAAACTATGCAGCAATGAAAATGTGGTTCTTGGCTAACCCCCCTGGGAAAGCAACAATCCAGGTTCAGACCATCGATG
ATTTTACATGGCTAAATTCTAGCTATAGCCCAGTTTTGAGACAGCTTGGCTCTGCATCTATAAAAGATTATTATTTTAGGACGCATCGCACCAATGCAGATTCCAATTTGAAGTATCGGAATCCGAAGTATCTATCTATCCTTAACCATCTTCGCTTCTACCTCCCTGAGATCTTTCCAGAGCTCGATAAAGTCCTCTTC
CTGGATGATGATATTGTGGTGCAAAAGGATCTGACAGCACTTTGGAATATTGATATGCAAGGGCGGGTAAATGGTGCGGTGGAAACCTGTGGAGAAAGCTTTCATAGGTTTGACAAATATCTCAATTTTTCACACGAACTCATTGCAAAGAACTTTGATCCAAACGCTTGTGGATGGGCATATGGAATGAATATATTTGA
TCTTGATGAATGGAGGAAGCGGGGAATAACAGGGATTTACCATCAATGGCAAAACCTAAACATAGATAGACAGTTATGGAAGCTGGGTACCTTGCCTCCTGGGCTGATCACTTTCTACAACCTGACATTCGTCTTGGATAAATCTTGGCATGTTCTGGGTCTTGGATATAACCCTAATGTTGATTCGACTGAAATTGAAA
GAGCAGCAGTGATACATTACAACGGCAATATGAAACCATGGCTGGACATAGCCATCCCCAAATACAGGCATTACTGGACAAAGTATGTGAAATACGATCAAATCTTCTTGCAGCTATGCAATATCAGTGAATAGAGAACATAGCCATCCCAAGTACAGGCATTACTGGACAAAGTATGTGAAATATGATCACATCTTCTT
GCAGCTGTGCAATATCAATGAATAGATTTACTAGAAGATTGTTTATTTTTTCATGAACTTGCACCAAGGGAACCTGTGCAAGTCCCTTTGTTGGTTGCCACAAGAAGTGAAAGGTTAACCAAATATGGTAAAATCGCAGCTCCATTGCTCTGTTGGTGTACTTAGGAGGACATTCAGATGTGAATCTGGGTAGTCTGGCG
AGTGGACTCTCACTCACCCTAACTGCAATTTGTTACACAGTGAAAAGTGGCAATCTTGGAAATGTATACTTGTTTTCTGCAGACATTGCTGCAATGTTGTGTGCATGTATTACACATTTTATAACTTCATTCTAAGGCCTAATTTAGGCACAATTTTAA
>TRINITY_DN109387_c0_g1_i2 from sample A2 / Example unspliced isoform:GCCGTGATATGTAAAATGTGGACTTGTGCTGATTATTCTATGTGTGATCTGGTGATGTGCAGCACTGATTTGCATTTCCATGATGAGGTACCGGACCCAGGAAACTGTAGACTATAAATACTCGGATAATGGGATGTCTTCTAATGCGGCAAAGGTAGCTTAGTTTTCTTTACTTTCTAGCCCGTGGCTACAAAGCTCTG
GGCTGATCTTCCGCTAGATTGCGTTTGGAATCTTCTTTTGCGGCATTTCTATTAGTAGCAGACGATTAATTCAAGCATCAGCTGTTATTTCGAGCTTTTTGGAGTGCATTAAAGCTTGTGTCTTGCTTGGAAAAGGTATCTGTTAAAAGTCAATTGCGATGGAGAACCACGGTTTGGTTTTAGGTTTCGGATTGTAGCTT
TGAAGGCCACGATTTTGTGAAATCCAAGCTATTTTAGCAAGATTTGGCATCGTTGAATCAAAGTGGCCCCTGCACAAGAATTGCTTTGCTCCAATGGCAACATAAATCAGTCGGCTCATTATTTTGATTTTGTGTAAAGGCAAAGTGACTATTTAGGGCCAAAATACCGAATGAAGGATTTCTCCGCGACAAGCTTTAGG
GCTTTGATTTCGATCTGCACCTGTACAGTTAAAGAGAGGGCCGAACTTTGAAGCCTACTGCTCTTACGAAGTATCTTATTAATTGTTTGGAGTTTGACAATGCCTCCCGTTAGAGGGGAAGGGCATGCGTCCCGTCACTTTGTGGGAGGCGGAAGATGCTATAGACCTGTCATTCTATTGCTCTGCTTAACAGTTTCCGC
GCCAATTATCCTTTTTACAGGCCGATTGCACAGTTTTGGCTCTTCAGTTGGGAAGAAGGATTTCATCGATGATCCATCTTCGAGCATTAGTTTTGTCAGCGATTCGAGAAAGTTAAATGCCCTTCATCAGGAACCAGGGATCTTTCTCAGGGAGCCCATTAGAGAAGTTTACAAGGAGGAAACTGATACTCCAGTTTCAC
ATCATCTTTTAAACAAGGAACAGTCGGAACCAGTTAATAATGCTACAGAAAATAAAAGAAGTTTTGAACAAGATTCAAGTGAAATTGAGACGGAGGATACTTCTTCAATAAATGAAGAGAGAGAAATTGAGAGTCTTACTTCTAGAAAAGACTTAACATCTGCAATCAGGGAACAATCTGAAGCCATTGAAAATGCTACA
CAAAATAAAAGAAGTTTCAAAGAAGATTCAAGTGAATTTGATCCTGAGGGTATTTCCTCAATCCATGAAGAGGGAGAAACTGAGAGATTTACTTCTGAAGAGGTAACATCTGTAAACATGGAACGGTCTGAACCCATTGAAAACGCTACACAGAATAGAAGAAGTTTCAAAGAAGATTCAAGTGAAATTGATACTGGGGA
TACTTCCCCAATTCATGAAGGGGGACAAACTGAAATGATTACTGCTAGAAAAGAGGAACATGCAAAGCTAGAACTCCCAGGAGTAACAAGGCCCAGAGAGATAAGTTCAGGAGGATCCGAAAAACGTAATGTCCCAAACAAACAGAAAGTGGTTTCAGATGCCCTGGTGAGGCAGATGCGAGATCAACTAATTAGGGCCA
GGGTTTATCTAAACTTTGCCCCTATTCGGAATAATGCTCACTTTGTACGGGAGCTGAGGCAGAGGATGAAGGAAGTCCAGCGATCCTTGGGTGAAGCAAGCAAGGATTCTGACCTGCCTAGAAGTGCTTCTGAAAGAATGAAGACCATGGAACGTACTTTGACTAGAGGCATGCAACTGTATAATGACTGTTCTGCTATG
GTAAAGAAGCTCCGAGCTATGGTGCACCTTGCAGAAGAACAACTCCGAGTGCACAAGAGGCAGAGTACATATTTGACTCAGCTAGCTGCAAAAACCCTTCCTAAAGGCCTTCATTGCCTCCCTATGCGCTTGGCTACAGAGTATTATGCCTTAAATTCTAGTGAGCAAGACTTTCTACACAAGGAAAACTTAGATGACAA
AACTCTTTACCATTATGCAATATTTTCTGACAATGTTCTTGCAACAGCAGTGGTTGTGAACTCTACCGTATTTCGTGCTAAGGAGCCAGAAAAGCATGTATTTCATTTGGTCACTGATAAGCTAAACTATGCAGCAATGAAAATGTGGTTCTTGGCTAACCCCCCTGGGAAAGCAACAATCCAGGTTCAGACCATCGATG
ATTTTACATGGCTAAATTCTAGCTATAGCCCAGTTTTGAGACAGCTTGGCTCTGCATCTATAAAAGATTATTATTTTAGGACGCATCGCACCAATGCAGATTCCAATTTGAAGTATCGGAATCCGAAGTATCTATCTATCCTTAACCATCTTCGCTTCTACCTCCCTGAGATCTTTCCAGAGCTCGATAAAGTCCTCTTC
CTGGATGATGATATTGTGGTGCAAAAGGATCTGACAGCACTTTGGAATATTGATATGCAAGGGCGGGTAAATGGTGCGGTGGAAACCTGTGGAGAAAGCTTTCATAGGTTTGACAAATATCTCAATTTTTCACACGAACTCATTGCAAAGAACTTTGATCCAAACGCTTGTGGATGGGCATATGGAATGAATATATTTGA
TCTTGATGAATGGAGGAAGCGGGGAATAACAGGGATTTACCATCAATGGCAAAACCTAgtaagtacatgctaaccttctacattctgcttattgcttttttttttaatctgtactctgggttttgtaacattgtatctgatctctgtgcttatgttcatctcagAACATAGATAGACAGTTATGGAAGCTGGGTACCTTG
CCTCCTGGGCTGATCACTTTCTACAACCTGACATTCGTCTTGGATAAATCTTGGCATGTTCTGGGTCTTGGATATAACCCTAATGTTGATTCGACTGAAATTGAAAGAGCAGCAGTGATACATTACAACGGCAATATGAAACCATGGCTGGACATAGCCATCCCCAAATACAGGCATTACTGGACAAAGTATGTGAAATA
CGATCAAATCTTCTTGCAGCTATGCAATATCAGTGAATAGAGAACATAGCCATCCCAAGTACAGGCATTACTGGACAAAGTATGTGAAATATGATCACATCTTCTTGCAGCTGTGCAATATCAATGAATAGATTTACTAGAAGATTGTTTATTTTTTCATGAACTTGCACCAAGGGAACCTGTGCAAGTCCCTTTGTTGG
TTGCCACAAGAAGTGAAAGGTTAACCAAATATGGTAAAATCGCAGCTCCATTGCTCTGTTGGTGTACTTAGGAGGACATTCAGATGTGAATCTGGGTAGTCTGGCGAGTGGACTCTCACTCACCCTAACTGCAATTTGTTACACAGTGAAAAGTGGCAATCTTGGAAATGTATACTTGTTTTCTGCAGACATTGCTGCAA
TGTTGTGTGCATGTATTACACATTTTATAACTTCATTCTAAGGCCTAATTTAGGCACAATTTTAA
Intron 3 GTAAGGCTTA ... CTTATTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 30.43 | 24 | 12 | 9 |
| A2 | 28.3 | 19 | 9 | 6 |
| A3 | 36 | 8 | 6 | 3 |
| A4 | 23.81 | 8 | 3 | 2 |
| A5 | 33.33 | 2 | 2 | 0 |
| A6 | 11.11 | 4 | 1 | 0 |
| A7 | 18.18 | 18 | 3 | 5 |
| A8 | 28 | 9 | 5 | 2 |
| A9 | 18.75 | 13 | 4 | 2 |
| A10 | 13.33 | 13 | 4 | 0 |
>TRINITY_DN114067_c0_g1_i5 from sample A1 / Example spliced isoformTTTAATCTGAATGTTCCGTATAAGGCCGTGATATGTAAAATGTGGACTTGTGCTGATTATTCTATGTGTGATCTGGTGATGTGCAGCACTGATTTGCATTTCCATGATGAGGTACCGGACCCAGGAAACTGTAGACTATAAATACTCGGATAATGGGATGTCTTCTAATGCGGCAAAGGTAGCTTAGTTTTCTTTACTTT
CTAGCCCGTGGCTACAAAGCTCTGGGCTGATCTTCCGCTAGATTGCGTTTGGAATCTTCTTTTGCGGCATTTCTATTAGTAGCAGACGATTAATTCAAGCATCAGCTGTTATTTCGAGCTTTTTGGAGTGCATTAAAGCTTGTGTCTTGCTTGGAAAAGGTATCTGTTAAAAGTCAATTGCGATGGAGAACCACGGTTTG
GTTTTAGGTTTCGGATTGTAGCTTTGAAGGCCACGATTTTGTGAAATCCAAGCTATTTTAGCAAGATTTGGCATCGTTGAATCAAAGTGGCCCCTGCACAAGAATTGCTTTGCTCCAATGGCAACATAAATCAGTCGGCTCATTATTTTGATTTTGTGTAAAGGCAAAGTGACTATTTAGGGCCAAAATACCGAATGAAG
GATTTCTCCGCGACAAGCTTTAGGGCTTTGATTTCGATCTGCACCTGTACAGTTAAAGAGAGGGCCGAACTTTGAAGCCTACTGCTCTTACGAAGTATCTTATTAATTGTTTGGAGTTTGACAATGCCTCCCGTTAGAGGGGAAGGGCATGCGTCCCGTCACTTTGTGGGAGGCGGAAGATGCTATAGACCTGTCATTCT
ATTGCTCTGCTTAACAGTTTCCGCGCCAATTATCCTTTTTACAGGCCGATTGCACAGTTTTGGCTCTTCAGTTGGGAAGAAGGATTTCATCGATGATCCATCTTCGAGCATTAGTTTTGTCAGCGATTCGAGAAAGTTAAATGCCCTTCATCAGGAACCAGGGATCTTTCTCAGGGAGCCCATTAGAGAAGTTTACAAGG
AGGAAACTGATACTCCAGTTTCACATCATCTTTTAAACAAGGAACAGTCGGAACCAGTTAATAATGCTACAGAAAATAAAAGAAGTTTTGAACAAGATTCAAGTGAAATTGAGACGGAGGATACTTCTTCAATAAATGAAGAGAGAGAAATTGAGAGTCTTACTTCTAGAAAAGACTTAACATCTGCAATCAGGGAACAA
TCTGAAGCCATTGAAAATGCTACACAAAATAAAAGAAGTTTCAAAGAAGATTCAAGTGAATTTGATCCTGAGGGTATTTCCTCAATCCATGAAGAGGGAGAAACTGAGAGATTTACTTCTGAAGAGGTAACATCTTTAAACATGGAACGGTCTGAACCCATTGAAAACGCTACACAGAATAGAAGAAGTTTCAAAGAAGA
TTCAAGTGAAATTGATACTGGGGATACTTCCCCAATTCATGAAGGGGGACAAACTGAAATGATTACTGCTAGAAAAGAGGAACATGCAAAGCTAGAACTCCCAGGAGTAACAAGGCCCAGAGAGATAAGTTCAGGAGGATCCGAAAAACGTAATGTCCCAAACAAACAGAAAGTGGTTTCAGATGCCCTGGTGAGGCAGA
TGCGAGATCAACTAATTAGGGCCAGGGTTTATCTAAACTTTGCCCCTATTCGGAATAATGCTCACTTTGTACGGGAGCTGAGGCAGAGGATGAAGGAAGTCCAGCGATCCTTGGGTGAAGCAAGCAAGGATTCTGACCTGCCTAGAAGTGCTTCTGAAAGAATGAAGACCATGGAACGTACTTTGACTAGAGGCATGCAA
CTGTATAATGACTGTTCTGCTATGGTAAAGAAGCTCCGAGCTATGGTGCACCTTGCAGAAGAACAACTCCGAGTGCACAAGAGGCAGAGTACATATTTGACTCAGCTAGCTGCAAAAACCCTTCCTAAAGGCCTTCATTGCCTCCCTATGCGCTTGGCTACAGAGTATTATGCCTTAAATTCTAGTGAGCAAGACTTTCT
ACACAAGGAAAACTTAGATGACAAAACTCTTTACCATTATGCAATATTTTCTGACAATGTTCTTGCAACAGCAGTGGTTGTGAACTCTACCGTATTTCGTGCTAAGGAGCCAGAAAAGCATGTATTTCATTTGGTCACTGATAAGCTAAACTATGCAGCAATGAAAATGTGGTTCTTGGCTAACCCCCCTGGGAAAGCAA
CAATCCAGGTTCAGACCATCGATGATTTTACATGGCTAAATTCTAGCTATAGCCCAGTTTTGAGACAGCTTGGCTCTGCATCTATAAAAGATTATTATTTTAGGACGCATCGCACCAATGCAGATTCCAATTTGAAGTATCGGAATCCGAAGTATCTATCTATCCTTAACCATCTTCGCTTCTACCTCCCTGAGATCTTT
CCAGAGCTCGATAAAGTCCTCTTCCTGGATGATGATATTGTGGTGCAAAAGGATCTGACAGCACTTTGGAATATTGATATGCAAGGGCGGGTAAATGGTGCGGTGGAAACCTGTGGAGAAAGCTTTCATAGGTTTGACAAATATCTCAATTTTTCACACGAACTCATTGCAAAGAACTTTGATCCAAACGCTTGTGGATG
GGCATATGGAATGAATATATTTGATCTTGATGAATGGAGGAAGCGGGGAATAACAGGGATTTACCATCAATGGCAAAACCTAAACATAGATAGACAGTTATGGAAGCTGGGTACCTTGCCTCCTGGGCTGATCACTTTCTACAACCTGACATTCGTCTTGGATAAATCTTGGCATGTTCTGGGTCTTGGATATAACCCTA
ATGTTGATTCGACTGAAATTGAAAGAGCAGCAGTGATACATTACAACGGCAATATGAAACCATGGCTGGACATAGCCATCCCCAAATACAGGCATTACTGGACAAAGTATGTGAAATATGATCAAATCTTCTTGCAGCTATGCAATATCAGTGAATAGAGAACATAGCCATCCCAAGTACAGGCATTACTGGACAAAGTA
TGTGAAATATGATCACATCTTCTTGCAGCTGTGCAATATCAATGAATAGATTTACTAGAAGATTGTTTATTTTTTCATGAACTTGCACCAAGGGAACCTGTGCAAGTCCCTTTGTTGGTTGCCACAAGAAGTGAAAGGTTAACCAAATATGGTAAAATCGCAGCTCCATTGCTCTGTTGGTGTACTTAGGAGGACATTCA
GATGTGAATCTGGGTAGTCTGGCGAGTGGACTCTCACTCACCCTAACTGCAATTTGTTACACAGTGAAAAGTGGCAATCTTGGAAATGTATACTTTTTTTTGCAGACATTAAAAATGGGTATTTAA
>TRINITY_DN114067_c0_g1_i4 from sample A1 / Example unspliced isoform:TCTGTAGCTTTTCTAATTCTGCTGCATATCGGATCGACATTGAACTGTAAGACTATCATGATTGTCTAGGAACCAGGGATCTTTCTCAGGGAGCCCATTAGAGAAGTTTACAAGGAGGAAACTGATACTCCAGTTTCACATCATCTTTTAAACAAGGAACAGTCGGAACCAGTTAATAATGCTACAGAAAATAAAAGAAG
TTTTGAACAAGATTCAAGTGgtaaggcttacaaacaaaactggcacatttatttgtttgtgattttaattactatatctcatcaggaacgcttattgcagAAATTGAGACGGAGGATACTTCTTCAATAAATGAAGAGAGAGAAATTGAGAGTCTTACTTCTAGAAAAGACTTAACATCTGCAATCAGGGAACAATCTGA
AGCCATTGAAAATGCTACACAAAATAAAAGAAGTTTCAAAGAAGATTCAAGTGAATTTGATCCTGAGGGTATTTCCTCAATCCATGAAGAGGGAGAAACTGAGAGATTTACTTCTGAAGAGGTAACATCTTTAAACATGGAACGGTCTGAACCCATTGAAAACGCTACACAGAATAGAAGAAGTTTCAAAGAAGATTCAA
GTGAAATTGATACTGGGGATACTTCCCCAATTCATGAAGGGGGACAAACTGAAATGATTACTGCTAGAAAAGAGGAACATGCAAAGCTAGAACTCCCAGGAGTAACAAGGCCCAGAGAGATAAGTTCAGGAGGATCCGAAAAACGTAATGTCCCAAACAAACAGAAAGTGGTTTCAGATGCCCTGGTGAGGCAGATGCGA
GATCAACTAATTAGGGCCAGGGTTTATCTAAACTTTGCCCCTATTCGGAATAATGCTCACTTTGTACGGGAGCTGAGGCAGAGGATGAAGGAAGTCCAGCGATCCTTGGGTGAAGCAAGCAAGGATTCTGACCTGCCTAGAAGTGCTTCTGAAAGAATGAAGACCATGGAACGTACTTTGACTAGAGGCATGCAACTGTA
TAATGACTGTTCTGCTATGGTAAAGAAGCTCCGAGCTATGGTGCACCTTGCAGAAGAACAACTCCGAGTGCACAAGAGGCAGAGTACATATTTGACTCAGCTAGCTGCAAAAACCCTTCCTAAAGGCCTTCATTGCCTCCCTATGCGCTTGGCTACAGAGTATTATGCCTTAAATTCTAGTGAGCAAGACTTTCTACACA
AGGAAAACTTAGATGACAAAACTCTTTACCATTATGCAATATTTTCTGACAATGTTCTTGCAACAGCAGTGGTTGTGAACTCTACCGTATTTCGTGCTAAGGAGCCAGAAAAGCATGTATTTCATTTGGTCACTGATAAGCTAAACTATGCAGCAATGAAAATGTGGTTCTTGGCTAACCCCCCTGGGAAAGCAACAATC
CAGGTTCAGACCATCGATGATTTTACATGGCTAAATTCTAGCTATAGCCCAGTTTTGAGACAGCTTGGCTCTGCATCTATAAAAGATTATTATTTTAGGACGCATCGCACCAATGCAGATTCCAATTTGAAGTATCGGAATCCGAAGTATCTATCTATCCTTAACCATCTTCGCTTCTACCTCCCTGAGATCTTTCCAGA
GCTCGATAAAGTCCTCTTCCTGGATGATGATATTGTGGTGCAAAAGGATCTGACAGCACTTTGGAATATTGATATGCAAGGGCGGGTAAATGGTGCGGTGGAAACCTGTGGAGAAAGCTTTCATAGGTTTGACAAATATCTCAATTTTTCACACGAACTCATTGCAAAGAACTTTGATCCAAACGCTTGTGGATGGGCAT
ATGGAATGAATATATTTGATCTTGATGAATGGAGGAAGCGGGGAATAACAGGGATTTACCATCAATGGCAAAACCTAAACATAGATAGACAGTTATGGAAGCTGGGTACCTTGCCTCCTGGGCTGATCACTTTCTACAACCTGACATTCGTCTTGGATAAATCTTGGCATGTTCTGGGTCTTGGATATAACCCTAATGTT
GATTCGACTGAAATTGAAAGAGCAGCAGTGATACATTACAACGGCAATATGAAACCATGGCTGGACATAGCCATCCCCAAATACAGGCATTACTGGACAAAGTATGTGAAATATGATCAAATCTTCTTGCAGCTATGCAATATCAGTGAATAGAGAACATAGCCATCCCAAGTACAGGCATTACTGGACAAAGTATGTGA
AATATGATCACATCTTCTTGCAGCTGTGCAATATCAATGAATAGATTTACTAGAAGATTGTTTATTTTTTCATGAACTTGCACCAAGGGAACCTGTGCAAGTCCCTTTGTTGGTTGCCACAAGAAGTGAAAGGTTAACCAAATATGGTAAAATCGCAGCTCCATTGCTCTGTTGGTGTACTTAGGAGGACATTCAGATGT
GAATCTGGGTAGTCTGGCGAGTGGACTCTCACTCACCCTAACTGCAATTTGTTACACAGTGAAAAGTGGCAATCTTGGAAATGTATACTTTTTTTTGCAGACATTAAAAATGGGTATTTAA