sp|Q9M9H4|PD338_ARATH ----> Protein PIGMENT DEFECTIVE 338, chloroplastic
Intron 1 GTAAAGTTTA ... CTCTTCTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 14.22 | 88 | 22 | 7 |
| A2 | 11.16 | 91.7 | 7 | 16 |
| A3 | 8.42 | 87.7 | 5 | 11 |
| A4 | 13.22 | 72.3 | 9 | 13 |
| A5 | 8.92 | 52 | 3 | 7 |
| A6 | 7.65 | 199.3 | 4 | 29 |
| A7 | 8.17 | 337.3 | 12 | 48 |
| A8 | 7.15 | 345 | 8 | 45 |
| A9 | 7.06 | 316 | 10 | 38 |
| A10 | 8.91 | 236 | 9 | 37 |
>TRINITY_DN119614_c10_g1_i4 from sample A1 / Example spliced isoformCGGCTATATTATTCCCCTTCTCTACCTCGTTCGAATTGAAATCTTCTTAAACCCTTAAACCCAACTCCAAAGCCCCAAAATGTACCTGTCGTGTATTTTCTTCAAATGAAAACATGCTTAGCCAGGCATCCCCAGTAGTCTTTCTGCAGGATTTATCGGCACCCCATGCACTGTTCCCGCAACAGAAGCCTGCGTTCTTC
TCAGCAACAGCAAAACTCAGCAAAACCCTGAGCTACAGAACAAATAAATCGGTAAAAATTGGCGTCGACAGGGCTCATTTGATCGCAGGAAACCCTCCTATACGTCCCAAAAGGCTCAAGTTACTGGGAAAACCGGTCATCATTGAAGGAAGCTCACCGAAATCTCATCCAGCAGAAGAAATTCTCAAACCTAACAGCCC
ATCCGACAAAGAAGAAAAAGAAGAATTGGAGTATTATGATCCTAAAGTTGGGGATCTTGTTATTGGGGTTGTTGTGTCCGGCAATGAGAATAGGCTCGAAATTAATATTGGTTCGGCCGGACTCGCTAGGATGCATTTGAATGAAGTTCTTCCCAATAACCAGTCCCAGATGGACCGACTTCTGTGTGAATTGCCCACTG
ACAGCAATACAGGAGCGAACTCTGCTGCTGTTGCTACTGATGATAATGGCTGTAACTTGTTTGGAAAAGGCATGATGGGTCTTCTGAAGGAGAAGAGGGCAATGGCTGATGGATGGACGAGGACAGGAGGTTCGTTTATTGAAGAAGGAACTATTCTGTATGCTCAGGTTCTTGGGAGGACACTGAGTGGGGAGCCTTTG
CTTTCGTCTAGGCGGTTTGCTAGAAGGGTTGCTTGGCAGCGAGTGAGGCAGAAAAGGAGAAATCTTTGCGAAGGAAATTTAGTTCCAGGGACTATAGAAAAGCTATTTTCATATGGTGCAGAAGTTAAGGTTGATGGAACAAGCGTAAGTGGGTTGCTTCACATTTCGAACATATCTTGTGCTCGAGTTCCATCAATAGG
CAACTTGTTCTCAAAGGGGGAAAAGGTGAAAGTTATGGTGGTCCGTTCCAATCTCCAAAATAAGGTCGCTTTTAG
>TRINITY_DN119614_c10_g1_i10 from sample A1 / Example unspliced isoform:ATGGGATCTAAAATTCTACTTTTTGCATATGAACTCTGATGAGGTTGGAACCACTCTCAAACATCCTGAAACAATTAATGGTAATGCTAAAATTTTAAGTAAACGGATTCCTTTTACTTTAATAATTGAATATTGCCGTTACTACTGAACACCTCCAGCAGGAAGACACTCCTCTAGCAAGCAAAAAAATGACCAGAACC
AGTCAAAATCGGTCTTCAAAACTTTTCCTAGGTGCATAGTTCAAAAAATCGAAGCTTTAAATTGTGAGTCAGGGAAAAAATCGCAAGTTTGGCTTGTGTTGACCGAGTCAAACTCGGTTAACGGATTTTGACTTGACCCGAACTGAATTGGCTCGTTCTGTGGGCGATCCGAGTCAAACTTGCGATTTCCCGAGTTTGAC
TCAAGATTCCTGTTACACTGCTAAAGTTACATTGAAGAACATATCAAATTCTTGAGGTCACAGAGCTGCTTCTGGTCATTTGTTCAACAGAAAATTTGCTCATTTTTATAATTGGAAGAACTATTTATAGTGACGTATAATCTTCCTTGTGGATTGTTTTATAGAAAAGGAGAAATCTTTGCGAAGGAAATTTAGTTCCA
GGGACTATAGAAAAGCTATTTTCATATGGTGCAGAAGTTAAGGTTGATGGAACAAGCGTAAGgtaaagtttattatctttctctaagcatttcctattcattgtttaagagatattggtgtttacatccaattcaaattatctttatttgtctttgaaaaatatgtcattgaattttatgttctctaattgccacattta
tggtattatttgccacaatgcatatgctttttttttttcctttttttcaattgaacacatcatgggaaaccctcaggtacttcccctcatttcaaggatggtacccaaggtaaaccaccggcgccgattacagggcctaacccggtggggacatcaagtgaggccctgcaaagccacccggggatttgaccccgagacct
tctgcttgcgattatagcactcaaccacttgagctaacccaccgggctaccacaatgcatatgctaataagtgcagacattaaatttgttctatgtgaacaactactgcaaaataacccctaggtattagaaagtgtttcagttctgttgaaagttagaaatattgtgacaaattatagataggaagaccatgcactaat
tactaattagataggataaggacaaccattagggaaatggactctctaatgaatgtctcaatctataattgaatcatgaggccgatgctgttctttcaagttttggatatcacggatgaatctcataaattttaataattttcttataatctttgttcatattctttttctagtgagtatttccttctacttgaattaaa
aaatattgacaaacatatttctcttctcagTGGGTTGCTTCACATTTCGAACATATCTTGTGCTCGAGTTCCATCAATAGGCAACTTGTTCTCAAAGGGGGAAAAGGTGAAAGTTATGGTGGTCCGTTCCAATCTCCAAAATAAGGTCGCTTTTAGGTAATGTTTGATCCCTATGAATTTGAGAGGACACCTCAAGTGGG
AATTCCATTTCTTTTTATTTAAAAAAAATTTGAGAATGCTTGTGCTCCCAAAGAACTTGGTATATGATTGGCTCATAAAGAGACTTAGATACAAGAAATATCATGTCTTGAGTTCTAAGTGAATCTAAGAAAGCATATTCTATTTTGTCACTCTGATTTAGTGTTTTCTTCTCCCTGTTTTGCTGGGGATGGCTGCAACT
TGGCCTTTATAATGGCTCAGGCTAATGCACGAGACTATGCACAAAATGGGAGGAGGAATATCTCTCACTTCAATATCTTTGTATTACACACTAAAATATATCTATAGTACATATTTATTTCCAAATTGGCCACTCAAAATTAAATTATTCAACGTTTTCTAAAATACAGTCCTATCTTAGAATAGTTTGTATAGCATTTT
AAAATTTAGTTTATTTGCACGTGCATGTATTTTAAGTTTGCTATTTCTCTGCATGCACTTGCTTTTAAAGTGTACACTCTATTTTTAAAACATGTGTATCTCTATATTAATGGTCAATTAAATATTCTAACACCCCCTCCCCTCCCCTGCTACCATTTTGATTTCCTTTGCATCACAAATCTCCCCAGACTTTTTCAAAC
GTTGCTCAATGCTTTTGTGTCTGCTAGCTGATCTTCAGTCTGCAATATGACACTTTAAATTCCTTGTTTTGTTCTTGCTCTCTGACGTAGCAGTGATGAAACTTATTATGCTTGATTTTTGTATTGAACATTGGAACTATATTTTGAGTTGAATAACATTTTGATTGTCATAAACTAGAGGTGTGGCTTGAGTTTGTGGA
AGACTCAAATCTCCAATAACACTCCTGAGCTATACCGCATCATGAGTTCCACTGACTACCACTGGACAATGTAGTGGTTGGTTTCATTTTTCTACCCCATGAAATTATTCCTGAACCCATGCTGAATGACTAACCTATTGCAGATTTTCTTTCATCTATTCCACCTGATCAAGTTCAATTAGTGTGCCCAACAACTTGAA
GTTATCATTATGCATGTAATGAACATCGAGGGGCATACCTTGAAGGCTTGAACTGTGAAACAGTGCTAACAGTGTAAGTTTACTCTGGCCTAATTGTGGTAAGATAGAGGAGACTCCTACTAACTGCCTATAAAATGTTTTATCTGCTGGATTTGAATCTTCAAGGGTTCATTGCTTTACCCCTGCTGCAATAGAAGTCC
CTAGTGAGTTACAAACAACCATATTAATTCTAATTTCTGTTAAGTAACTTCTATGCATATTTAGTTTGGAACATGAAAATGCTATGATCCTTTACTGTACTTCCACTTCCAAACAGTACTGAAGCAGGCCTAAATTTGTCATCTCAAAGGCTATATGCAACTCACCTTTTAGTGTTGAAATTTCATTTGCATCGGGCAAT
TAATGCAAATCTGAACATTCACCTTTATTTCTAAAATAAAAAATGTTCCTCAGATCTTAACCCTAGAATTTTGCCTTTAGGACTGCTGTAAATTAATGTGTAAAACAGAAGTGGAACAATCACAGTAATTCACCTTTAGTAGCCCAAAAATCCACGGCAATTCAAAGAGAAAAGATACCAATCATTCTAGTGAGTTTCCA
GCTCTCTAGGACAACTTCCAATGCATAAACCAGATTGAAAACTCTTGTTATACAGAAGATATAACAACAAACACAACGGTAATAGATGGCTGTACTGTTATCTTCAATCTTAGTGTTAAGTCCCTTGACAGTTTTCTTTCAAGTGTGTCAAATCAGCATGACAATTAAGAGCTGG
Intron 2 GTTGAAGATA ... TCATGGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 100 | 0 | 1 | 17.5 |
| A2 | 100 | 0 | 2 | 11.5 |
| A3 | -1 | 0 | 1 | 13.5 |
| A4 | -1 | 0 | 1 | 8.5 |
| A5 | -1 | 0 | 0 | 6 |
| A6 | 100 | 0 | 1 | 41 |
| A7 | 100 | 0 | 1 | 62.5 |
| A8 | 96.8 | 1 | 5 | 101 |
| A9 | 86.66 | 2 | 9 | 62 |
| A10 | 100 | 0 | 7 | 59 |
>TRINITY_DN40499_c4_g1_i7 from sample A9 / Example spliced isoformTGATTATTTTGCTTGTATTAGTATATTTGCTTCATTCTTTTTCATGTGCGTGCTAAAGGAATTCGGACATTCTAATGCAAGAGTGGCTAGTCCAACTTGATACATCTAGTATCAACTTTCCCCAGATCGAATGAGTTCTTAGGATTGCAACAAAGTTTCAAAGGCAGGATAAAAAGTTGCAAGTACGGCTGACTTGGAGA
GTGAGGAAGGACTGATTCTTATTAATAAAGCG
>TRINITY_DN40499_c4_g1_i8 from sample A9 / Example unspliced isoform:TGATTATTTTGCTTGTATTAGTATATTTGCTTCATTCTTTTTCATGTGCGTGCTAAAGGAATTCGGACATTCTAATGCAAGAGTGGCTAGTCCAACTTGATACATCTAGTATCAACTTTCCCCAGATCGAATGAGTTCTTAGGATTGCAACAAAGTTTCAAAGGCAGGATAAAAAGTTGCAAGgttgaagataatcatgg
aaataagtatacttttcttataatataccttggaatttgttgagggcccaggattttttgagctgaatgcctaaatttttttcttgatataacttgttttggtggacaaatcaatccatggtgatctgttttaatgtttagttgcatattggaaagcatgaagttactggatttcaatgactaatctttttgcatattac
atctatcaacatctatcacatacgctacagttatttttttagcaaaactgatctttgcatctccaggaaaacacattttaaaatgctgattccgaatttatttcctcgtttccttcagtctgtgtttttcatgtatctatagtcttttgaagagcagcaaatgctcaaatatgtgcttatttattgagcttattgtcatg
ggcagTACGGCTGACTTGGAGAGTGAGGAAGGACTGATTCTTATTAATAAAGCGAAAGTTTTTGAAGAAGCAGAACAAATAGCAGCAGCCTATAGAAGTAAACTAGGTTCCTCATGTATGCACGTAAGGGAGGTTAGTACAGATGATTTAGACAAGTGTGATGAAAATGACGTGTCTTATGCAAATAGGGACTGGTTTAA
ATTTGAGCCAGATGTTAGGCTATGATTACCGTAACTCTAAAGGATAAAATTCAGAGTGATGTATACTGCAATATACCTTTGTAATGCCTTACTGTTTTGTGGAGATTCAAAATTACTGTTTTGTGGAGATTGAAAAAGAGATCCGAAAGAGATTTTCCCTTTAAGAAAATGTATATGATGCCCCTATGTGTCACTATCAT
ATAACTACATTATTCTTTGATGCCAGTCATCACAATTGTGTTTCAGCTGGCAGAGACGAGATTGTTTCAAAAATGGAAAAAAGGGCATCATGGATAACGTTATTGTATAACAGAAGTAAGTTTGGATCAAAGAGTTTTGACATTTTGAACATATCTTGCTCCTATCTGGTAAGTTATTGTTATGCACGTATTCAACCTAC
CTTTCCCCTATGGTGTAATCATGGCTATGCATTAGAACATGTTACATGTTAAGTCTACAAAAACAAGACTAAAAAGAGAACCGGTAAATGCATTGTCAATTGTTTTTTCTTTATTTTAAATTTTTTCTACTTCTAAGTCAGTATTTATTTATTACCACAACATAATGTATTGAATATGATTGAACATTAAATCATGATAA
ATCCC
Intron 3 GTACTTATTC ... TCTCATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 34.56 | 109.4 | 7.1 | 56 |
| A2 | 27.96 | 92.2 | 4.2 | 35 |
| A3 | 32.02 | 105.5 | 7.6 | 48 |
| A4 | 29.91 | 95.1 | 4.6 | 39 |
| A5 | 16.25 | 32.1 | 0.5 | 6 |
| A6 | 27.2 | 403.1 | 12.8 | 146 |
| A7 | 27.19 | 569 | 18.7 | 205 |
| A8 | 28.15 | 723.7 | 32.6 | 275 |
| A9 | 27.71 | 457.1 | 22.5 | 169 |
| A10 | 25.44 | 407.2 | 10.4 | 135 |
>TRINITY_DN119614_c10_g1_i2 from sample A1 / Example spliced isoformATGGGATCTAAAATTCTACTTTTTGCATATGAACTCTGATGAGGTTGGAACCACTCTCAAACATCCTGAAACAATTAATGGTAATGCTAAAATTTTAAGTAAACGGATTCCTTTTACTTTAATAATTGAATATTGCCGTTACTACTGAACACCTCCAGCAGGAAGACACTCCTCTAGCAAGCAAAAAAATGACCAGAACC
AGTCAAAATCGGTCTTCAAAACTTTTCCTAGGTGCATAGTTCAAAAAATCGAAGCTTTAAATTGTGAGTCAGGGAAAAAATCGCAAGTTTGGCTTGTGTTGACCGAGTCAAACTCGGTTAACGGATTTTGACTTGACCCGAACTGAATTGGCTCGTTCTGTGGGCGATCCGAGTCAAACTTGCGATTTCCCGAGTTTGAC
TCAAGATTCCTGTTACACTGCTAAAGTTACATTGAAGAACATATCAAATTCTTGAGGTCACAGAGCTGCTTCTGGTCATTTGTTCAACAGAAAATTTGCTCATTTTTATAATTGGAAGAACTATTTATAGTGACGTATAATCTTCCTTGTGGATTGTTTTATAGAAAAGGAGAAATCTTTGCGAAGGAAATTTAGTTCCA
GGGACTATAGAAAAGCTATTTTCATATGGTGCAGAAGTTAAGGTTGATGGAACAAGCGTAAGGTAAAGTTTATTATCTTTCTCTAAGCATTTCCTATTCATTGTTTAAGAGATATTGGTGTTTACATCCAATTCAAATTATCTTTATTTGTCTTTGAAAAATATGTCATTGAATTTTATGTTCTCTAATTGCCACATTTA
TGGTATTATTTGCCACAATGCATATGCTTTTTTTTTTTCCTTTTTTTCAATTGAACACATCATGGGAAACCCTCAGGTACTTCCCCTCATTTCAAGGATGGTACCCAAGGTAAACCACCGGCGCCGATTACAGGGCCTAACCCGGTGGGGACATCAAGTGAGGCCCTGCAAAGCCACCCGGGGATTTGACCCCGAGACCT
TCTGCTTGCGATTATAGCACTCAACCACTTGAGCTAACCCACCGGGCTACCACAATGCATATGCTAATAAGTGCAGACATTAAATTTGTTCTATGTGAACAACTACTGCAAAATAACCCCTAGGTATTAGAAAGTGTTTCAGTTCTGTTGAAAGTTAGAAATATTGTGACAAATTATAGATAGGAAGACCATGCACTAAT
TACTAATTAGATAGGATAAGGACAACCATTAGGGAAATGGACTCTCTAATGAATGTCTCAATCTATAATTGAATCATGAGGCCGATGCTGTTCTTTCAAGTTTTGGATATCACGGATGAATCTCATAAATTTTAATAATTTTCTTATAATCTTTGTTCATATTCTTTTTCTAGTGAGTATTTCCTTCTACTTGAATTAAA
AAATATTGACAAACATATTTCTCTTCTCAGTGGGTTGCTTCACATTTCGAACATATCTTGTGCTCGAGTTCCATCAATAGGCAACTTGTTCTCAAAGGGGGAAAAGGTGAAAGTTATGGTGGTCCGTTCCAATCTCCAAAATAAGGTCGCTTTTAGTACGGCTGACTTGGAGAGTGAGGAAGGACTGATTCTTATTAATA
AAGCGAAAGTTTTTGAAGAAGCAGAACAAATAGCAGCAGCCTATAGAAGTAAACTAGGTTCCTCATGTATGCACGTAAGGGAGGTTAGTACAGATGATTTAGACAAGTGTGATGAAAATGACGTGTCTTATGCAAATAGGGACTGGTTTAAATTTGAGCCAGATGTTAGGCTATGATTACCGTAACTCTAAAGGATAAAA
TTCAGAGTGATGTATACTGCAATATACCTTTGTAATGCCTTACTGTTTTGTGGAGATTCAAAATTACTGTTTTGTGGAGATTGAAAAAGAGATCCGAAAGAGATTTTCCCTTTAAGAAAATGTATATGATGCCCCTATGTGTCACTATCATATAACTACATTATTCTTTGATGCCAGTCATCACAATTGTGTTTCAGCTG
GCAGAGACGAGATTGTTTCAAAAATGGAAAAAAGGGCATCATGGATAACGTTATTGTATAACAGAAGTAAGTTTGGATCAAAGAGTTTTGACATTTTGAACATATCTTGCTCCTATCTGGTAAGTTATTGTTATGCGCGTATTCAACCTACCTTTCCCCTATGGTGTAATCATGGCTATGCATTAGAACATGTTACATGT
TAAGTCTACAAAAACAAGACTAAAAAGAGAACCAGT
>TRINITY_DN119614_c10_g1_i7 from sample A1 / Example unspliced isoform:ACAAAGTTTCAAAGGCAGGATAAAAAGTTGCAAGGTTGAAGATAATCATGGAAATAAGTATACTTTTCTTATAATATACCTTGGAATTTGTTGAGGGCCCAGGATTTTTTGAGCTGAATGCCTAAATTTTTTTCTTGATATAACTTGTTTTGGTGGACAAATCAATCCATGGTGATCTGTTTTAATGTTTAGTTGCATAT
TGGAAAGCATGAAGTTACTGGATTTCAATGACTAATCTTTTTGCATATTACATCTATCAACATCTATCACATACGCTACAGTTATTTTTTTAGCAAAACTGATCTTTGCATCTCCAGGAAAACACATTTTAAAATGCTGATTCCGAATTTATTTCCTCGTTTCCTTCAGTCTGTGTTTTTCATGTATCTATAGTCTTTTG
AAGAGCAGCAAATGCTCAAATATGTGCTTATTTATTGAGCTTATTGTCATGGGCAGTACGGCTGACTTGGAGAGTGAGGAAGGACTGATTCTTATTAATAAAGCGgtacttattctttacttttcgttttgagctatcctttttcgaaggacaaacctgaaattttacaggatttagggtatgagagcagaatatgttgt
ctaagattgcattgtctaatacatgtacattaagttaaatgtttggctctcttgtgagaaaagtgtaacctgaggtcattggttttagtgatttcaaagacattttttggggtgagaaaagtttagattctgttctgatttgcgtaaggctaattaataattttgatgtcatgtaatatactgttttcttttgacatctc
atgcagAAAGTTTTTGAAGAAGCAGAACAAATAGCAGCAGCCTATAGAAGTAAACTAGGTTCCTCATGTATGCACGTAAGGGAGGTTAGTACAGATGATTTAGACAAGTGTGATGAAAATGACGTGTCTTATGCAAATAGGGACTGGTTTAAATTTGAGCCAGATGTTAGGCTATGATTACCGTAACTCTAAAGGATAAA
ATTCAGAGTGATGTATACTGCAATATACCTTTGTAATGCCTTACTGTTTTGTGGAGATTCAAAATTACTGTTTTGTGGAGATTGAAAAAGAGATCCGAAAGAGATTTTCCCTTTAAGAAAATGTATATGATGCCCCTATGTGTCACTATCATATAACTACATTATTCTTTGATGCCAGTCATCACAATTGTGTTTCAGCT
GGCAGAGACGAGATTGTTTCAAAAATGGAAAAAAGGGCATCATGGATAACGTTATTGTATAACAGAAGTAAGTTTGGATCAAAGAGTTTTGACATTTTGAACATATCTTGCTCCTATCTGGTAAGTTATTGTTATGCGCGTATTCAACCTACCTTTCCCCTATGGTGTAATCATGGCTATGCATTAGAACATGTTACATG
TTAAGTCTACAAAAACAAGACTAAAAAGAGAACCAGT
Intron 4 GTTAGTACAG ... TGTGTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 72.27 | 27 | 102.3 | 39 |
| A2 | 63.44 | 32 | 75.7 | 36 |
| A3 | 76.22 | 18 | 82.7 | 33 |
| A4 | 68.79 | 27 | 98 | 22 |
| A5 | 48.41 | 13 | 21.3 | 4 |
| A6 | 75.01 | 110 | 374.7 | 288 |
| A7 | 70.43 | 163 | 505.7 | 275 |
| A8 | 75.47 | 213 | 720.7 | 595 |
| A9 | 75.52 | 125 | 475.7 | 298 |
| A10 | 69.17 | 124 | 405 | 155 |
>TRINITY_DN48957_c4_g2_i2 from sample A7 / Example spliced isoformTCTTGCGCTTTACCCTTCCGGCTTTCTTCCAGAGCTAGGCTGAAGAGAGATTTCATGGACCAAAATAACCCCAAAGTTTTGGTGTGCCACGTCTCACGGGTTCGAGAAGACACATAATCATCAATTAGACCACCAAACTCCTCCACAAGCTCCTGGGCACTAGGGATCGGAATCTCCTTGCGCAACCTCCTTTCTAGATG
TTCAGTGTGCTCCTTAGCATGCCGACTGACTCTGCTCGCGAAGAAACCCTTCGCATTCTCCATTTCTTTAAGGGACCGAGGCATATTAGAGTGCCTGGGGCCATTGGAGGTCTTCTTTCTGGTGACCTTAGTGCGAACCATTCTGCAGTCTCCCAACCCGAATAGCTAGACCAGAGGCCACTAACCCCAAGCACGGAGGA
GGAATGTGAGTGTCACGAAAGCAGGCTACGTCCCGTTATGGGTATAGCAATCAGACTTGTTGAAGCTAGTGCGAGGAGGACGCTAGCAATGATGCCTCCAAAATAGAAGCCATCTCCTATCCCGACGAGCCTTTCCATCATGATTTAAGCCGACACGAGGTGCATGAATGTCCACACAGGGGAATTATCAGGAGTGTACC
CAAGACTCAGATCGGAGCAGGGATCTGTACCCTCCCCGTAAATACCTTATCATGCCAATATCAATTGCTCGAGAGATTCTTGAGTGGGAGCTGCCACCTTCCGGCCAACATGCCCCCACATACTTGTCAACACCGATGGTACTTATTACCTCGACATGTGTCAGTGTGGTGATGGCACCCGTCGTGGGGAGGCTATTATA
TTGTGTTTAACTTTGACCTATGTTTGGAATTTTTAGTTTTACTGTCTAAATGATTCTGAGTCATGTATGTTTTGAATGTGTATATATTTTGAGAACCCTAATTTTAGTGAATTGCTAGATATATTCTCAAAATTTATAGCTTTTTTCCACATCCATGCCTTTCATAATTATTTATTTTATAAATCTAAATGTTTATTTAT
TTATTTTTCAGAAAGGAACTTGTTTTTCTCCATTAGAAAACTTCTATTGATTATTTTGCTTGTATTAGTATATTTGCTTCATTCTTTTTCATGTGCGTGCTAAAGGAATTCGGACATTCTAATGCAAGAGTGGCTAGTCCAACTTGATACATCTAGTATCAACTTTCCCCAGATCGAATGAGTTCTTAGGATTGCAACAA
AGTTTCAAAGGCAGGATAAAAAGTTGCAAGGTTGAAGATAATCATGGAAATAAGTATACTTTTCTTATAATATACCTTGGAATTTGTTGAGGGCCCAGGATTTTTTGAGCTGAATGCCTAAATTTTTTTCTTGATATAACTTGTTTTGGTGGACAAATCAATCCATGGTGATCTGTTTTAATGTTTAGTTGCATATTGGA
AAGCATGAAGTTACTGGATTTCAATGACTAATCTTTTTGCATATTACATCTATCAACATCTATCACATACGCTACAGTTATTTTTTTAGCAAAACTGATCTTTGCATCTCCAGGAAAACACATTTTAAAATGCTGATTCCGAATTTATTTCCTCGTTTCCTTCAGTCTGTGTTTTTCATGTATCTATAGTCTTTTGAAGA
GCAGCAAATGCTCAAATATGTGCTTATTTATTGAGCTTATTGTCATGGGCAGTACGGCTGACTTGGAGAGTGAGGAAGGACTGATTCTTATTAATAAAGCGAAAGTTTTTGAAGAAGCAGAACAAATAGCAGCAGCCTATAGAAGTAAACTAGGTTCCTCATGTATGCACGTAAGGGAGCTGGCAGAGACGAGATTGTTT
CAAAAATGGAAAAAAGGGCATCATGGATAACGTTATTGTATAACAGAAGTAAGTTTGGATCAAAGAGTTTTGACATTTTGAACAACA
>TRINITY_DN48957_c4_g2_i4 from sample A7 / Example unspliced isoform:GTGGGGACATCAAGTGAGGCCCTGCAAAGCCACCCGGGGATTTGACCCCGAGACCTTCTGCTTGCGATTATAGCACTCAACCACTTGAGCTAACCCACCGGGCTACCACAATGCATATGCTAATAAGTGCAGACATTAAATTTGTTCTATGTGAACAACTACTGCAAAATAACCCCTAGGTATTAGAAAGTGTTTCAGTT
CTGTTGAAAGTTAGAAATATTGTGACAAATTATAGATAGGAAGACCATGCACTAATTACTAATTAGATAGGATAAGGACAACCATTAGGGAAATGGACTCTCTAATGAATGTCTCAATCTATAATTGAATCATGAGGCCGATGCTGTTCTTTCAAGTTTTGGATATCACGGATGAATCTCATAAATTTTAATAATTTTCT
TATAATCTTTGTTCATATTCTTTTTCTAGTGAGTATTTCCTTCTACTTGAATTAAAAAATATTGACAAACATATTTCTCTTCTCAGTGGGTTGCTTCACATTTCGAACATATCTTGTGCTCGAGTTCCATCAATAGGCAACTTGTTCTCAAAGGGGGAAAAGGTGAAAGTTATGGTGGTCCGTTCCAATCTCCAAAATAA
GGTCGCTTTTAGTACGGCTGACTTGGAGAGTGAGGAAGGACTGATTCTTATTAATAAAGCGAAAGTTTTTGAAGAAGCAGAACAAATAGCAGCAGCCTATAGAAGTAAACTAGGTTCCTCATGTATGCACGTAAGGGAGgttagtacagatgatttagacaagtgtgatgaaaatgacgtgtcttatgcaaatagggact
ggtttaaatttgagccagatgttaggctatgattaccgtaactctaaaggataaaattcagagtgatgtatactgcaatatacctttgtaatgccttactgttttgtggagattcaaaattactgttttgtggagattgaaaaagagatccgaaagagattttccctttaagaaaatgtatatgatgcccctatgtgtca
ctatcatataactacattattctttgatgccagtcatcacaattgtgtttcagCTGGCAGAGACGAGATTGTTTCAAAAATGGAAAAAAGGGCATCATGGATAACGTTATTGTATAACAGAAGTAAGTTTGGATCAAAGAGTTTTGACATTTTGAACAACA
Intron 5 GTAAAGTTTA ... AAACCCTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 86.21 | 2 | 22 | 3 |
| A2 | 100 | 0 | 7 | 12 |
| A3 | 80 | 1 | 5 | 3 |
| A4 | 91.3 | 1 | 9 | 12 |
| A5 | 100 | 0 | 3 | 3 |
| A6 | 60 | 2 | 4 | 2 |
| A7 | 63.64 | 4 | 12 | 2 |
| A8 | 35.29 | 11 | 8 | 4 |
| A9 | 40.74 | 8 | 10 | 1 |
| A10 | 52.94 | 4 | 9 | 0 |
>TRINITY_DN40797_c2_g1_i1 from sample A8 / Example spliced isoformTTCTGAATGGGATCTAAAATTCTACTTTTTGCATATGAACTCTGATGAGGTTGGAACCACTCTCAAACATCCTGAAACAATTAATGGTAATGCTAAAATTTTAAGTAAACGGATTCCTTTTACTTTAATAATTGAATATTGCCGTTACTACTGAACACCTCCAGCAGGAAGACACTCCTCTAGCAAGCAAAAAAATGACC
AGAACCAGTCAAAATCGGTCTTCAAAACTTTTCCTAGGTGCATAGTTCAAAAAATCGAAGCTTTAAATTGTGAGTCAGGGAAAAAATCGCAAGTTTGGCTTGTGTTGACCGAGTCAAACTCGGTTAACGGATTTTGACTTGACCCGAACTGAATTGGCTCGTTCTGTGGGCGATCCGAGTCAAACTTGCGATTTCCCGAG
TTTGACTCAAGATTCCTGTTACACTGCTAAAGTTACATTGAAGAACATATCAAATTCTTGAGGTCACAGAGCTGCTTCTGGTCATTTGTTCAACAGAAAATTTGCTCATTTTTATAATTGGAAGAACTATTTATAGTGACGTATAATCTTCCTTGTGGATTGTTTTATAGAAAAGGAGAAATCTTTGCGAAGGAAATTTA
GTTCCAGGGACTATAGAAAAGCTATTTTCATATGGTGCAGAAGTTAAGGTTGATGGAACAAGCGTAAGGTACTTCCCCTCATTTCAAGGATGGTACCCAAGGTAAACCACCGGCGCCGATTACAGGGCCTAACCCGGTGGGGACATCAAGTGAGG
>TRINITY_DN40797_c2_g1_i8 from sample A8 / Example unspliced isoform:TTCTGAATGGGATCTAAAATTCTACTTTTTGCATATGAACTCTGATGAGGTTGGAACCACTCTCAAACATCCTGAAACAATTAATGGTAATGCTAAAATTTTAAGTAAACGGATTCCTTTTACTTTAATAATTGAATATTGCCGTTACTACTGAACACCTCCAGCAGGAAGACACTCCTCTAGCAAGCAAAAAAATGACC
AGAACCAGTCAAAATCGGTCTTCAAAACTTTTCCTAGGTGCATAGTTCAAAAAATCGAAGCTTTAAATTGTGAGTCAGGGAAAAAATCGCAAGTTTGGCTTGTGTTGACCGAGTCAAACTCGGTTAACGGATTTTGACTTGACCCGAACTGAATTGGCTCGTTCTGTGGGCGATCCGAGTCAAACTTGCGATTTCCCGAG
TTTGACTCAAGATTCCTGTTACACTGCTAAAGTTACATTGAAGAACATATCAAATTCTTGAGGTCACAGAGCTGCTTCTGGTCATTTGTTCAACAGAAAATTTGCTCATTTTTATAATTGGAAGAACTATTTATAGTGACGTATAATCTTCCTTGTGGATTGTTTTATAGAAAAGGAGAAATCTTTGCGAAGGAAATTTA
GTTCCAGGGACTATAGAAAAGCTATTTTCATATGGTGCAGAAGTTAAGGTTGATGGAACAAGCGTAAGgtaaagtttattatctttctctaagcatttcctattcattgtttaagagatattggtgtttacatccaattcaaattatctttatttgtctttgaaaaatatgtcattgaattttatgttctctaattgcca
catttatggtattatttgccacaatgcatatgctttttttttttcctttttttcaattgaacacatcatgggaaaccctcagGTACTTCCCCTCATTTCAAGGATGGTACCCAAGGTAAACCACCGGCGCCGATTACAGGGCCTAACCCGGTGGGGACATCAAGTGAGG
Intron 6 GTAAGTGAAC ... TTGTTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 27.61 | 173.5 | 66 | 15 |
| A2 | 30.05 | 135 | 58 | 13 |
| A3 | 29.3 | 169 | 70 | 11 |
| A4 | 28.69 | 117 | 47 | 7 |
| A5 | 12.23 | 50.3 | 7 | 5 |
| A6 | 25.01 | 315.3 | 105 | 30 |
| A7 | 19.65 | 560.8 | 137 | 40 |
| A8 | 25.4 | 508.3 | 173 | 41 |
| A9 | 21.63 | 461 | 127 | 37 |
| A10 | 22.8 | 461 | 136 | 38 |
>TRINITY_DN105334_c9_g3_i2 from sample A4 / Example spliced isoformCGGCTATATTATTCCCCTTCTCTACCTCGTTCGAATTGAAATCTTCTTAAACCCTTAAACCCAACTCCAAAGCCCCAAAATGTACCTGTCGTGTATTTTCTTCAAATGAAAACATGCTTAGCCAGGCATCCCCAGTAGTCTTTCTGCAGGATTTATCGGCACCCCATGCACTGTTCCCGCAACAGAAGCCTGCGTTCTTC
TCAGCAACAGCAAAACTCAGCAAAACCCTGAGCTACAGAACAAATAAATCGGTAAAAATTGGCGTCGACAGGGCTCATTTGATCGCAGGAAACCCTCCTATACGTCCCAAAAGGCTCAAGTTACTGGGAAAACCGGTCATCATTGAAGGAAGCTCACCGAAATCTCATCCAGCAGAAGAAATTCTCAAACCTAACAGCCC
ATCCGACAAAGAAGAAAAAGAAGAATTGGAGTATTATGATCCTAAAGTTGGGGATCTTGTTATTGGGGTTGTTGTGTCCGGCAATGAGAATAGGCTCGAAATTAATATTGGTTCGGCCGGACTCGCTAGGATGCATTTGAATGAAGTTCTTCCCAATAACCAGTCCCAGATGGACCGACTTCTGTGTGAATTGCCCACTG
ACAGCAATACAGGAGCGAACTCTGCTGCTGTTGCTACTGATGATAATGGCTGTAACTTGTTTGGAAAAGGCATGATGGGTCTTCTGAAGGAGAAGAGGGCAATGGCTGATGGATGGACGAGGACAGGAGGTTCGTTTATTGAAGAAGGAACTATTCTGTATGCTCAGGTTCTTGGGAGGACACTGAGTGGGGAGCCTTTG
CTTTCGTCTAGGCGGTTTGCTAGAAGGGTTGCTTGGCAGCGAGTGAGGCAGATAAAAGAAGAAAACGAACCTATTGTGATTTACATATCAGAATGGAACACTGGTGGCCTTACTTCTAGAATTGAGGGTTTAAGAGCATTTCTTCCCAAAGGTGAGATGGTGAATATACCTTTCGATAATTTTGCAGCCTTAAAAGAAAA
TGTTGGCAAACAAATATCTGTGCTTATTATAGCAGCAAATGAAGCATCGGGAGATTTAATAGTTAGTGAAAGACTAGCTTGGGTAAAGTGATCATTCCTTCAGAAAAGGAGAAATCTTTGCGAAGGAAATTTAGTTCCAGGGACTATAGAAAAGCTATTTTCATATGGTGCAGAAGTTAAGGTTGATGGAACAAGCGTAA
GTGGGTTGCTTCACATTTCGAACATATCTTGTGCTCGAGTTCCATCAATAGGCAACTTGTTCTCAAAGGGGGAAAAGGTGAAAGTTATGGTGGTCCGTTCCAATCTCCAAAATAAGGTCGCTTTTAGTACGGCTGACTTGGAGAGTGAGGAAGGACTGATTCTTATTAATAAAGCGAAAGTTTTTGAAGAAGCAGAACAA
ATAGCAGCAGCCTATAGAAGTAAACTAGGTTCCTCATGTATGCACGTAAGGGAGGTTAGTACAGATGATTTAGACAAGTGTGATGAAAATGACGTGTCTTATGCAAATAGGGACTGGTTTAAATTTGAGCCAGATGTTAGGCTATGATTACCGTAACTCTAAAGGATAAAATTCAGAGTGATGTATACTGCAATATACCT
TTGTAATGCCTTACTGTTTTGTGGAGATTCAAAATTACTGTTTTGTGGAGATTGAAAAAGAGATCCGAAAGAGATTTTCCCTTTAAGAAAATGTATATGATGCCCCTATGTGTCACTATCATATAACTACATTATTCTTTGATGCCAGTCATCACAATTGTGTTTCAGCTGGCAGAGACGAGATTGTTTCAAAAATGGAA
AAAAGGGCATCATGGATAACGTTATTGTATAACAGAAGTAAGTTTGGATCAAAGAGTTTTGACATTTTGAACATATCTTGCTCCTATCTGGTAAGTTATTGTTATGCACGTATTCAACCTACCTTTCCCCTATGGTGTAATCATGGCTATGCATTAGAACATGTTACATGTTAAGTCTACAAAAACAAGACTAAAAAGAG
AACCGGTAAATGCATTGTC
>TRINITY_DN105334_c9_g3_i1 from sample A4 / Example unspliced isoform:ATAAAAGAAGAAAACGAACCTATTGTGATTTACATATCAGAATGGAACACTGGTGGCCTTACTTCTAGAATTGAGGGTTTAAGAGCATTTCTTCCCAAAGGTGAGATGGTGAATATACCTTTCGATAATTTTGCAGCCTTAAAAGAAAATgtaagtgaacttgtgttttaatgatagcattttgtttggtataaattagt
acaagatttgctttattctctgctgatatttggaaatttctctttctcgtattgtaatacttgagttgatatctactgctacgataagtgtttatcacaaatgtgggatgagaattttgtgttgattgttggaagtttggagcttagctgtgtattaacaagaatttagttttattttgtttgcagGTTGGCAAACAAAT
ATCTGTGCTTATTATAGCAGCAAATGAAGCATCGGGAGATTTAATAGTTAGTGAAAGACTAGCTTGGGTAAAGTGATCATTCCTTCAGGTGTAAAGTTGAACTTAAATGCCTAGCAATGGTTGAAGCAGTTTGAACAAAATTTAGTTTGAGTGTCCTTTACACTTCCACATGGCCTTGCCCTGGATTTGCATGCATCCTG
CACACCAATCTATTCCACATTCAATTACTTATGCTTGTAATCATCTCCTTTTGAGTGCTCTATATTTGATTGTACCATTATTGCCAGTCTTCAGCATTTATGTTAAATCAGATATTCTGCATTTCATCTGGGCATGTGGTTGGACTGCATTAAGATTTACTTTGATAAATACAGACTAGAATTTTTCTATCTATGTCTGT
ATACTAAATTTCAATGTTACCAGAATCAAAATCGGCAATAAATCAGTGAGGCAAAAGAGTCAAAGTTTTGAATCGGATCGGGAAAAAATCGGCAAATACAAAAAATTAAATATATACACATTTTGAATTATAAAAAGCATTTTTCAT
Intron 7 GTACATTTTT ... TTTTTTCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 18.93 | 197 | 1 | 46 |
| A2 | 17.22 | 173 | 1 | 36 |
| A3 | 17.15 | 198 | 0 | 41 |
| A4 | 17.83 | 129 | 1 | 28 |
| A5 | 28.07 | 41 | 0 | 16 |
| A6 | 13.87 | 298 | 0 | 48 |
| A7 | 20.72 | 551 | 0 | 144 |
| A8 | 16.73 | 473 | 0 | 95 |
| A9 | 16.34 | 430 | 0 | 84 |
| A10 | 18 | 419 | 0 | 92 |
>TRINITY_DN119614_c10_g1_i1 from sample A1 / Example spliced isoformCGGCTATATTATTCCCCTTCTCTACCTCGTTCGAATTGAAATCTTCTTAAACCCTTAAACCCAACTCCAAAGCCCCAAAATGTACCTGTCGTGTATTTTCTTCAAATGAAAACATGCTTAGCCAGGCATCCCCAGTAGTCTTTCTGCAGGATTTATCGGCACCCCATGCACTGTTCCCGCAACAGAAGCCTGCGTTCTTC
TCAGCAACAGCAAAACTCAGCAAAACCCTGAGCTACAGAACAAATAAATCGGTAAAAATTGGCGTCGACAGGGCTCATTTGATCGCAGGAAACCCTCCTATACGTCCCAAAAGGCTCAAGTTACTGGGAAAACCGGTCATCATTGAAGGAAGCTCACCGAAATCTCATCCAGCAGAAGAAATTCTCAAACCTAACAGCCC
ATCCGACAAAGAAGAAAAAGAAGAATTGGAGTATTATGATCCTAAAGTTGGGGATCTTGTTATTGGGGTTGTTGTGTCCGGCAATGAGAATAGGCTCGAAATTAATATTGGTTCGGCCGGACTCGCTAGGATGCATTTGAATGAAGTTCTTCCCAATAACCAGTCCCAGATGGACCGACTTCTGTGTGAATTGCCCACTG
ACAGCAATACAGGAGCGAACTCTGCTGCTGTTGCTACTGATGATAATGGCTGTAACTTGTTTGGAAAAGGCATGATGGGTCTTCTGAAGGAGAAGAGGGCAATGGCTGATGGATGGACGAGGACAGGAGGTTCGTTTATTGAAGAAGGAACTATTCTGTATGCTCAGGTTCTTGGGAGGACACTGAGTGGGGAGCCTTTG
CTTTCGTCTAGGCGGTTTGCTAGAAGGGTTGCTTGGCAGCGAGTGAGGCAGATAAAAGAAGAAAACGAACCTATTGTGATTTACATATCAGAATGGAACACTGGTGGCCTTACTTCTAGAATTGAGGGTTTAAGAGCATTTCTTCCCAAAGGTGAGATGGTGAATATACCTTTCGATAATTTTGCAGCCTTAAAAGAAAA
TGTTGGCAAACAAATATCTGTGCTTATTATAGCAGCAAATGAAGCATCGGGAGATTTAATAGTTAGTGAAAGACTAGCTTGGGTAAAGTGATCATTCCTTCAGGTGTAAAGTTGAACTTAAATGCCTAGCAATGGTTGAAGCAGTTTGAACAAAATTTAGTTTGAGTGTCCTTTACACTTCCACATGGCCTTGCCCTGGA
TTTGCATGCATCCTGCACACCAATCTATTCCACATTCAATTACTTATGCTTGTAATCATCTCCTTTTGAGTGCTCTATATTTGATTGTACCATTATTGCCAGTCTTCAGCATTTATGTTAAATCAGATATTCTGCATTTCATCTGGGCATGTGGTTGGACTGCATTAAGATTTACTTTGATAAATACAGACTAGAATTTT
TCTATCTATGTCTGTATACTAAATTTCAATGTTACCAGAATCAAAATCGGCAATAAATCAGTGAGGCAAAAGAGTCAAAGTTTTGAATCGGATCGGGAAAAAATCGGCAAATACAAAAAATTAAATATATACACATTTTGAATTATAAAAAGCATTTTTCATTGATATTCAAAGTAGCGATGTCCATATACTGCAAGATA
TCAATAGATGTCTAAAAGATATCAACAGATATCCAAAATATATCAATTCTCATCCATAAGATGAGTCCAGATAGATAAATCATTGCCTATATTGGGATCCTATTCATCAATAGCACCCTGTGCCCCCCTCTTCTAAGCTCTAGCCCTTGCCTCTACATCAAATCTCGAAGTTGATCCTCCAAGGACATTTGTCAACACCC
TAC
>TRINITY_DN119614_c10_g1_i8 from sample A1 / Example unspliced isoform:TGGCCTTACTTCTAGAATTGAGgtacatttttagtgttattagttggtactttttatagcttccattctgattttttcaagatgtaacgtagtttcttatagctccagcttatacttttaagttctccttgggtgattttatctatttgcttcatttgacttgatttttggagggtacaaatatttaactagaagctaac
cttttctgatttgaatttccatttttttccagGGTTTAAGAGCATTTCTTCCCAAAGGTGAGATGGTGAATATACCTTTCGATAATTTTGCAGCCTTAAAAGAAAATGTTGGCAAACAAATATCTGTGCTTATTATAGCAGCAAATGAAGCATCGGGAGATTTAATAGTTAGTGAAAGACTAGCTTGGGTAAAGTGATCA
TTCCTTCAGGTGTAAAGTTGAACTTAAATGCCTAGCAATGGTTGAAGCAGTTTGAACAAAATTTAGTTTGAGTGTCCTTTACACTTCCACATGGCCTTGCCCTGGATTTGCATGCATCCTGCACACCAATCTATTCCACATTCAATTACTTATGCTTGTAATCATCTCCTTTTGAGTGCTCTATATTTGATTGTACCATT
ATTGCCAGTCTTCAGCATTTATGTTAAATCAGATATTCTGCATTTCATCTGGGCATGTGGTTGGACTGCATTAAGATTTACTTTGATAAATACAGACTAGAATTTTTCTATCTATGTCTGTATACTAAATTTCAATGTTACCAGAATCAAAATCGGCAATAAATCAGTGAGGCAAAAGAGTCAAAGTTTTGAATCGGATC
GGGAAAAAATCGGCAAATACAAAAAATTAAATATATACACATTTTGAATTATAAAAAGCATTTTTCATTGATATTCAAAGTAGCGATGTCCATATACTGCAAGATATCAATAGATGTCTAAAAGATATCAACAGATATCCAAAATATATCAATTCTCATCCATAAGATGAGTCCAGATAGATAAATCATTGCCTATATTG
GGATCCTATTCATCAATAGCACCCTGTGCCCCCCTCTTCTAAGCTCTAGCCCTTGCCTCTACATCAAATCTCGAAGTTGATCCTCCAAGGACATTTGTCAACACCCTAC