sp|Q8LPL7|ADAL_ARATH ----> N6-mAMP deaminase
Intron 1 GTTAGAGCAA ... TTCTGGCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 63.09 | 15.5 | 36 | 17 |
| A2 | 64 | 9 | 15 | 17 |
| A3 | 58.09 | 21 | 44 | 14 |
| A4 | 69.1 | 7.5 | 15 | 18.5 |
| A5 | 83.22 | 1 | 9 | 1 |
| A6 | 75.41 | 45.5 | 145 | 128.5 |
| A7 | 72.08 | 64 | 183 | 142 |
| A8 | 72.13 | 127 | 316 | 329.5 |
| A9 | 71.53 | 93 | 282 | 180.5 |
| A10 | 71.18 | 42 | 108 | 98 |
>TRINITY_DN108355_c0_g1_i6 from sample A2 / Example spliced isoformAAAGGTTTCAATAATTCTTTGAAGAATAATTTCCGGCACTTTAAAATCTCCTATCCACGGAACGGAGTCCACAACTTGTACGAATCCGGTCAAAGTACATAAAATAGAAACATGGCACGGGAATGTTGGAAATCAGAAATGCCATCATCACCATGATTGGAGATATAAGAGATAATTGAGCCTTTTACAGGGCAGGGCAT
ATAACATGTAAGAGGCGACTCAACGCAGCATACGACGACGAGGAGAGCAGGAAGTAAGTGGAGGGAAAGGGCAAAGGCAAAGCGCAGTTATGGCGGAGGAGTTAAAAGAGTGGTGCCGTTGTCTTCCGAAGGTTGAGCTTCACGCTCATCTCAATGGATCTATTCGCGATGCCACGCTACTAGAACTTGCAAGAGAGAGG
AGCAAGAAGGGCCAATTAGTTCTTTCTGATGTTGAAGATGTCATCTTGAAAGAGGATCGCTCACTGCAGGAGTGCTTCAAGTTGTTTGACTTGATCCACGTGCTCACCACTGACCATGGTACCATTAGTAGAATTGCTAAAGAAGTGATTGAAGATTTTGCAGCAGAAAATGTCATTTACTTGGAGCTACGAACAACACC
AAAGAAGAATGAAGCTATAGGTATGAGTAAGCGTTCATACGTGGAATCAGTTCTTGCTGGGTTCAAGGCAGTAGAGACAGTGGAAGCAATTTTTTTGCCTATTGATGGAAATATGGAACAACTTGTTCCACCTGTGCAACCAAATGGTCCAGCTGAAGGACCTAGAATGTGCCGAATATTTGTCCGTCTGCTTTTAAGTA
TAGATCGTCGTGAGAATTTAGAGGGAGCGATGGAAACAGTTCAGCTGGCTTTAGATATGAGGAATTCTGGTGTAGTTGGCATTGATCTTTCAGGAAACCCTATAGTTGGAGAGTGGCAGACATTCTTACCAGCATTGACATGGGCCAGAAATCAAGGGCTTCCTATTACTCTTCATTGTGGAGAGGTACCAAACCGGCAG
GAAATTCAAGGCATGCTGGACTTTCATCCTGAGAGACTTGGTCATGTGTGCTGCCTTGAAGATCCTGAATGGAAAACATTGAAGGCATCAGATATCCCGGTTGAGGTTTGCTTGACATCAAATGTCCGTACAGAATGCGTCACTTCAATAGCTGACCATCATTTTGCTGACCTATACCAGGAAAAACATCCTTTGGTCTT
GTGCACGGATGATCCAGGTGTCTTCTCTACTACAATTTCTTGGGAATATGCTCTCGCTGCTTCATGTTTTGAACTTACAAAAGTGGAGTTACTCCGACTGGCAAAGGACGCAGTAAACTTCATATTTGCTGATGATAAACTGAAGCAAACTCTAAGGCTCATTATTGATGCAGCAGAGTGCGGCTTACTGATACCCGATG
AAGATGCCGAAAAATAATTTAGACTTGGCAAGTTGGATAATTATATTGGACTATGGCATCCTCTTTCTTATTTAAGTTTGTGAAAAAGGATTTTAATACTCCGACGAACTCGGAAGGATTTTAATACTCCGACGAACTTGGACTGTAAGTATTGTGCTCAAGATTTTGTTTCAAATCAATTTCTCTTAAATCTAGAAATA
GCTTACAATCTAGACAGCAAAGGAATATAATTACAAATTAATAAAGTTGGGCTAGGAAACCATGATGGAAATACTGTAATGTTTGGGAGTTGTCACGAGTATCCTCATATCAACCTGCTGAAACTGAAACGGCTGTCATCTGAGTGACAAATATGGCGTGATAGAAGCCGTACATCCAAGGTGATATGCCCAACTGACAC
TTGTCTACTTTATATTTCTACAGACTGGACAGTTTTGCTTTTGAGCAAGGGTGTGCTGGGTTAGCCTGTGCACATGCATGGTTTGAAAGTCTATTTTTCCATCTAGCAGTAGCTGGACACAGCATCTGCTGAGCCTACCTATGCACATTCATCAACTAATATTCTACTCCTAGTTTCTTTTGCATCCTGTCTCAAATACT
TTATCCCAGCTGCAATTTAACACCCATGTATCATGAAATTGGTGATAAAGCTTGAATTGAGGACAGTATATTCTCAACATCTGAATTTAAATTGGCTCCTATGTCTTCTTAAAAGATCAACTAATATTTGTGGTTGATAAAATTATATCTATTCATAACTACTGTCCATACAAAGAGTGATTCGAGAGACTAATATACAC
AAATCCACATTTTAAGGGATTATCATTAGATTATGCTAGCTCGGTCTTGGTTTATTAGTGAG
>TRINITY_DN108355_c0_g1_i4 from sample A2 / Example unspliced isoform:AAAGGTTTCAATAATTCTTTGAAGAATAATTTCCGGCACTTTAAAATCTCCTATCCACGGAACGGAGTCCACAACTTGTACGAATCCGGTCAAAGTACATAAAATAGAAACATGGCACGGGAATGTTGGAAATCAGAAATGCCATCATCACCATGATTGGAGATATAAGAGATAATTGAGCCTTTTACAGGGCAGGGCAT
ATAACATGTAAGAGGCGACTCAACGCAGCATACGACGACGAGGAGAGCAGGAAGTAAGTGGAGGGAAAGGGCAAAGGCAAAGCGCAGTTATGGCGGAGGAGTTAAAAGAGTGGTGCCGTTGTCTTCCGAAGGTTGAGCTTCACGCTCATCTCAATGGATCTATTCGCGATGCCACGCTACTAGAACTTGCAAGAGAGAGG
AGCAAGAAGGGCCAATTAGTTCTTTCTGATGTTGAAGATGTCATCTTGAAAGAGGATCGCTCACTGCAGGAGTGCTTCAAGTTGTTTGACTTGATCCACGTGCTCACCACTGACCATGGTACCATTAGTAGAATTGCTAAAGAAGTGATTGAAGATTTTGCAGCAGAAAATGTCATTTACTTGGAGCTACGAACAACACC
AAAGAAGAATGAAGCTATAGGTATGAGTAAGCGTTCATACGTGGAATCAGTTCTTGCTGGGTTCAAGGCAGTAGAGACAGTGGAAGCAATTTTTTTGCCTATTGATGGAAATATGGAACAACTTGTTCCACCTGTGCAACCAAATGGTCCAGCTGAAGGACCTAGAATGTGCCGAATATTTGTCCGTCTGCTTTTAAGTA
TAGATCGTCGTGAGAATTTAGAGGGAGCGATGGAAACAGTTCAGCTGGCTTTAGATATGAGGAATTCTGGTGTAGTTGGCATTGATCTTTCAGGAAACCCTATAGTTGGAGAGTGGCAGACATTCTTACCAGCATTGACATGGGCCAGAAATCAAGGGCTTCCTATTACTCTTCATTGTGGAGAGGTACCAAACCGGCAG
GAAATTCAAGGCATGCTGGACTTTCATCCTGAGAGACTTGGTCATGTGTGCTGCCTTGAAGATCCTGAATGGAAAACATTGAAGGCATCAGATATCCCGGTTGAGGTTTGCTTGACATCAAATGTCCGTACAGAATGCGTCACTTCAATAGCTGACCATCATTTTGCTGACCTATACCAGGAAAAACATCCTTTGGTCTT
GTGCACGGATGATCCAGGTGTCTTCTCTACTACAATTTCTTGGGAATATGCTCTCGCTGCTTCATGTTTTGAACTTACAAAAGTGGAGTTACTCCGACTGGCAAAGGACGCAGTAAACTTCATATTTGCTGATGATAAACTGAAGCAAACTCTAAGGCTCATTATTGATGCAGCAGAGTGCGGCTTACTGATACCCGATG
AAGATGCCGAAAAATAATTTAGACTTGGCAAGTTGGATAATTATATTGGACTATGGCATCCTCTTTCTTATTTAAGgttagagcaattaccaatggcagtgaaattgcctaaaaatgtgtgtccttaagatcttctgtggttgtttttacatcacacaggaactgaaatctattttaatacaatatctaagggaaagaga
tgcctttttagctgatccaaagcggcattcatttctggccagTTTGTGAAAAAGGATTTTAATACTCCGACGAACTCGGAAGGATTTTAATACTCCGACGAACTTGGACTGTAAGTATTGTGCTCAAGATTTTGTTTCAAATCAATTTCTCTTAAATCTAGAAATAGCTTACAATCTAGACAGCAAAGGAATATAATTAC
AAATTAATAAAGTTGGGCTAGGAAACCATGATGGAAATACTGTAATGTTTGGGAGTTGTCACGAGTATCCTCATATCAACCTGCTGAAACTGAAACGGCTGTCATCTGAGTGACAAATATGGCGTGATAGAAGCCGTACATCCAAGGTGATATGCCCAACTGACACTTGTCTACTTTATATTTCTACAGACTGGACAGTT
TTGCTTTTGAGCAAGGGTGTGCTGGGTTAGCCTGTGCACATGCATGGTTTGAAAGTCTATTTTTCCATCTAGCAGTAGCTGGACACAGCATCTGCTGAGCCTACCTATGCACATTCATCAACTAATATTCTACTCCTAGTTTCTTTTGCATCCTGTCTCAAATACTTTATCCCAGCTGCAATTTAACACCCATGTATCAT
GAAATTGGTGATAAAGCTTGAATTGAGGACAGTATATTCTCAACATCTGAATTTAAATTGGCTCCTATGTCTTCTTAAAAGATCAACTAATATTTGTGGTTGATAAAATTATATCTATTCATAACTACTGTCCATACAAAGAGTGATTCGAGAGACTAATATACACAAATCCACATTTTAAGGGATTATCATTAGATTAT
GCTAGCTCGGTCTTGGTTTATTAGTGAG
Intron 2 GTATGTGTGG ... TTTTCAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 36.52 | 73 | 0 | 42 |
| A2 | 32.14 | 57 | 3 | 27 |
| A3 | 37.37 | 62 | 0 | 37 |
| A4 | 38.27 | 50 | 0 | 31 |
| A5 | 44.9 | 27 | 1 | 22 |
| A6 | 37.05 | 141 | 0 | 83 |
| A7 | 37.7 | 266 | 0 | 161 |
| A8 | 33.85 | 258 | 0 | 132 |
| A9 | 37.6 | 307 | 1 | 185 |
| A10 | 37.22 | 280 | 0 | 166 |
>TRINITY_DN108355_c0_g1_i8 from sample A2 / Example spliced isoformAAAGGTTTCAATAATTCTTTGAAGAATAATTTCCGGCACTTTAAAATCTCCTATCCACGGAACGGAGTCCACAACTTGTACGAATCCGGTCAAAGTACATAAAATAGAAACATGGCACGGGAATGTTGGAAATCAGAAATGCCATCATCACCATGATTGGAGATATAAGAGATAATTGAGCCTTTTACAGGGCAGGGCAT
ATAACATGTAAGAGGCGACTCAACGCAGCATACGACGACGAGGAGAGCAGGAAGTAAGTGGAGGGAAAGGGCAAAGGCAAAGCGCAGTTATGGCGGAGGAGTTAAAAGAGTGGTGCCGTTGTCTTCCGAAGGTTGAGCTTCACGCTCATCTCAATGGATCTATTCGCGATGCCACGCTACTAGAACTTGCAAGAGAGAGG
AGCAAGAAGGGCCAATTAGTTCTTTCTGATGTTGAAGATGTCATCTTGAAAGAGGATCGCTCACTGCAGGAGTGCTTCAAGTTGTTTGACTTGATCCACGTGCTCACCACTGACCATGGTACCATTAGTAGAATTGCTAAAGAAGTGATTGAAGATTTTGCAGCAGAAAATGTCATTTACTTGGAGCTACGAACAACACC
AAAGAAGAATGAAGCTATAGGTATGAGTAAGCGTTCATACGTGGAATCAGTTCTTGCTGGGTTCAAGGCAGTAGAGACAGTGGAAGCAATTTTTTTGCCTATTGATGGAAATATGGAACAACTTGTTCCACCTGTGCAACCAAATGGTCCAGCTGAAGGACCTAGAATGTGCCGAATATTTGTCCGTCTGCTTTTAAGTA
TAGATCGTCGTGAGAATTTAGAGGGAGCGATGGAAACAGTTCAGCTGGCTTTAGATATGAGGAATTCTGGTGTAGTTGGCATTGATCTTTCAGGAAACCCTATAGTTGGAGAGTGGCAGACATTCTTACCAGCATTGACATGGGCCAGAAATCAAGGGCTTCCTATTACTCTTCATTGTGGAGAGGTACCAAACCGGCAG
GAAATTCAAGGCATGCTGGACTTTCATCCTGAGAGACTTGGTCATGTGTGCTGCCTTGAAGATCCTGAATGGAAAACATTGAAGGCATCAGATATCCCGGTTGAGGTTTGCTTGACATCAAATGTCCGTACAGAATGCGTCACTTCAATAGCTGACCATCATTTTGCTGACCTATACCAGGAAAAACATCCTTTGGTCTT
GTGCACGGATGATCCAGGTGTCTTCTCTACTACAATTTCTTGGGAATATGCTCTCGCTGCTTCATGTTTTGAACTTACAAAAGTGGAGTTACTCCGACTGGCAAAGGACGCAGTAAACTTCATATTTGCTGATGATAAACTGAAGCAAACTCTAAGGCTCATTATTGATGCAGCAGAGTGCGGCTTACTGATACCCGATG
AAGATGCCGAAAAATAATTTAGACTTGGAACTGAAATCTATTTTAATACAATATCTAAGGGAAAGAGATGCCTTTTTAGCTGATCCAAAGCGGCATTCATTTCTGGCCAGTTTGTGAAAAAGGATTTTAATACTCCGACGAACTCGGAAGGATTTTAATACTCCGACGAACTTGGACTGTAAGTATTGTGCTCAAGATTT
TGTTTCAAATCAATTTCTCTTAAATCTAGAAATAGCTTACAATCTAGACAGCAAAGGAATATAATTACAAATTAATAAAGTTGGGCTAGGAAACCATGATGGAAATACTGTAATGTTTGGGAGTTGTCACGAGTATCCTCATATCAACCTGCTGAAACTGAAACGGCTGTCATCTGAGTGACAAATATGGCGTGATAGAA
GCCGTACATCCAAGGTGATATGCCCAACTGACACTTGTCTACTTTATATTTCTACAGACTGGACAGTTTTGCTTTTGAGCAAGGGTGTGCTGGGTTAGCCTGTGCACATGCATGGTTTGAAAGTCTATTTTTCCATCTAGCAGTAGCTGGACACAGCATCTGCTGAGCCTACCTATGCACATTCATCAACTAATATTCTA
CTCCTAGTTTCTTTTGCATCCTGTCTCAAATACTTTATCCCAGCTGCAATTTAACACCCATGTATCATGAAATTGGTGATAAAGCTTGAATTGAGGACAGTATATTCTCAACATCTGAATTTAAATTGGCTCCTATGTCTTCTTAAAAGATCAACTAATATTTGTGGTTGATAAAATTATATCTATTCATAACTACTGTC
CATACAAAGAGTGATTCGAGAGACTAATATACACAAATCCACATTTTAAGGGATTATCATTAGATTATGCTAGCTCGGTCTTGGTTTATTAGTGAG
>TRINITY_DN108355_c0_g1_i7 from sample A2 / Example unspliced isoform:TTAGAGGGAGCGATGGAAACAgtatgtgtggatttattggattgtaacactctattgtggtttctccacctgtctgaaaaaaatgcaaaatgcacagtccagacttctatttttagaacattgttcagcaatgacaagtcatccatttaatatctcccttttttggttttcaacagGTTCAGCTGGCTTTAGATATGAGG
AATTCTGGTGTAGTTGGCATTGATCTTTCAGGAAACCCTATAGTTGGAGAGTGGCAGACATTCTTACCAGCATTGACATGGGCCAGAAATCAAGGGCTTCCTATTACTCTTCATTGTGGAGAGGTACCAAACCGGCAGGAAATTCAAGGCATGCTGGACTTTCATCCTGAGAGACTTGGTCATGTGTGCTGCCTTGAAGA
TCCTGAATGGAAAACATTGAAGGCATCAGATATCCCGGTTGAGGTTTGCTTGACATCAAATGTCCGTACAGAATGCGTCACTTCAATAGCTGACCATCATTTTGCTGACCTATACCAGGAAAAACATCCTTTGGTCTTGTGCACGGATGATCCAGGTGTCTTCTCTACTACAATTTCTTGGGAATATGCTCTCGCTGCTT
CATGTTTTGAACTTACAAAAGTGGAGTTACTCCGACTGGCAAAGGACGCAGTAAACTTCATATTTGCTGATGATAAACTGAAGCAAACTCTAAGGCTCATTATTGATGCAGCAGAGTGCGGCTTACTGATACCCGATGAAGATGCCGAAAAATAATTTAGACTTGGAACTGAAATCTATTTTAATACAATATCTAAGGGA
AAGAGATGCCTTTTTAGCTGATCCAAAGCGGCATTCATTTCTGGCCAGTTTGTGAAAAAGGATTTTAATACTCCGACGAACTCGGAAGGATTTTAATACTCCGACGAACTTGGACTGTAAGTATTGTGCTCAAGATTTTGTTTCAAATCAATTTCTCTTAAATCTAGAAATAGCTTACAATCTAGACAGCAAAGGAATAT
AATTACAAATTAATAAAGTTGGGCTAGGAAACCATGATGGAAATACTGTAATGTTTGGGAGTTGTCACGAGTATCCTCATATCAACCTGCTGAAACTGAAACGGCTGTCATCTGAGTGACAAATATGGCGTGATAGAAGCCGTACATCCAAGGTGATATGCCCAACTGACACTTGTCTACTTTATATTTCTACAGACTGG
ACAGTTTTGCTTTTGAGCAAGGGTGTGCTGGGTTAGCCTGTGCACATGCATGGTTTGAAAGTCTATTTTTCCATCTAGCAGTAGCTGGACACAGCATCTGCTGAGCCTACCTATGCACATTCATCAACTAATATTCTACTCCTAGTTTCTTTTGCATCCTGTCTCAAATACTTTATCCCAGCTGCAATTTAACACCCATG
TATCATGAAATTGGTGATAAAGCTTGAATTGAGGACAGTATATTCTCAACATCTGAATTTAAATTGGCTCCTATGTCTTCTTAAAAGATCAACTAATATTTGTGGTTGATAAAATTATATCTATTCATAACTACTGTCCATACAAAGAGTGATTCGAGAGACTAATATACACAAATCCACATTTTAAGGGATTATCATTA
GATTATGCTAGCTCGGTCTTGGTTTATTAGTGAG
Intron 3 GTAAGATTGC ... CAATTCCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 0 | 39 | 0 | 0 |
| A2 | 12.5 | 21 | 3 | 1 |
| A3 | 5.26 | 36 | 2 | 1 |
| A4 | 0 | 45 | 0 | 0 |
| A5 | 0 | 7 | 0 | 0 |
| A6 | 0.65 | 152 | 1 | 0 |
| A7 | 1.41 | 173 | 2.5 | 0 |
| A8 | 1.75 | 250 | 4.5 | 0 |
| A9 | 1.9 | 230 | 4.5 | 0 |
| A10 | 3 | 143 | 4.5 | 0 |
>TRINITY_DN108355_c0_g1_i4 from sample A2 / Example spliced isoformAAAGGTTTCAATAATTCTTTGAAGAATAATTTCCGGCACTTTAAAATCTCCTATCCACGGAACGGAGTCCACAACTTGTACGAATCCGGTCAAAGTACATAAAATAGAAACATGGCACGGGAATGTTGGAAATCAGAAATGCCATCATCACCATGATTGGAGATATAAGAGATAATTGAGCCTTTTACAGGGCAGGGCAT
ATAACATGTAAGAGGCGACTCAACGCAGCATACGACGACGAGGAGAGCAGGAAGTAAGTGGAGGGAAAGGGCAAAGGCAAAGCGCAGTTATGGCGGAGGAGTTAAAAGAGTGGTGCCGTTGTCTTCCGAAGGTTGAGCTTCACGCTCATCTCAATGGATCTATTCGCGATGCCACGCTACTAGAACTTGCAAGAGAGAGG
AGCAAGAAGGGCCAATTAGTTCTTTCTGATGTTGAAGATGTCATCTTGAAAGAGGATCGCTCACTGCAGGAGTGCTTCAAGTTGTTTGACTTGATCCACGTGCTCACCACTGACCATGGTACCATTAGTAGAATTGCTAAAGAAGTGATTGAAGATTTTGCAGCAGAAAATGTCATTTACTTGGAGCTACGAACAACACC
AAAGAAGAATGAAGCTATAGGTATGAGTAAGCGTTCATACGTGGAATCAGTTCTTGCTGGGTTCAAGGCAGTAGAGACAGTGGAAGCAATTTTTTTGCCTATTGATGGAAATATGGAACAACTTGTTCCACCTGTGCAACCAAATGGTCCAGCTGAAGGACCTAGAATGTGCCGAATATTTGTCCGTCTGCTTTTAAGTA
TAGATCGTCGTGAGAATTTAGAGGGAGCGATGGAAACAGTTCAGCTGGCTTTAGATATGAGGAATTCTGGTGTAGTTGGCATTGATCTTTCAGGAAACCCTATAGTTGGAGAGTGGCAGACATTCTTACCAGCATTGACATGGGCCAGAAATCAAGGGCTTCCTATTACTCTTCATTGTGGAGAGGTACCAAACCGGCAG
GAAATTCAAGGCATGCTGGACTTTCATCCTGAGAGACTTGGTCATGTGTGCTGCCTTGAAGATCCTGAATGGAAAACATTGAAGGCATCAGATATCCCGGTTGAGGTTTGCTTGACATCAAATGTCCGTACAGAATGCGTCACTTCAATAGCTGACCATCATTTTGCTGACCTATACCAGGAAAAACATCCTTTGGTCTT
GTGCACGGATGATCCAGGTGTCTTCTCTACTACAATTTCTTGGGAATATGCTCTCGCTGCTTCATGTTTTGAACTTACAAAAGTGGAGTTACTCCGACTGGCAAAGGACGCAGTAAACTTCATATTTGCTGATGATAAACTGAAGCAAACTCTAAGGCTCATTATTGATGCAGCAGAGTGCGGCTTACTGATACCCGATG
AAGATGCCGAAAAATAATTTAGACTTGGCAAGTTGGATAATTATATTGGACTATGGCATCCTCTTTCTTATTTAAGGTTAGAGCAATTACCAATGGCAGTGAAATTGCCTAAAAATGTGTGTCCTTAAGATCTTCTGTGGTTGTTTTTACATCACACAGGAACTGAAATCTATTTTAATACAATATCTAAGGGAAAGAGA
TGCCTTTTTAGCTGATCCAAAGCGGCATTCATTTCTGGCCAGTTTGTGAAAAAGGATTTTAATACTCCGACGAACTCGGAAGGATTTTAATACTCCGACGAACTTGGACTGTAAGTATTGTGCTCAAGATTTTGTTTCAAATCAATTTCTCTTAAATCTAGAAATAGCTTACAATCTAGACAGCAAAGGAATATAATTAC
AAATTAATAAAGTTGGGCTAGGAAACCATGATGGAAATACTGTAATGTTTGGGAGTTGTCACGAGTATCCTCATATCAACCTGCTGAAACTGAAACGGCTGTCATCTGAGTGACAAATATGGCGTGATAGAAGCCGTACATCCAAGGTGATATGCCCAACTGACACTTGTCTACTTTATATTTCTACAGACTGGACAGTT
TTGCTTTTGAGCAAGGGTGTGCTGGGTTAGCCTGTGCACATGCATGGTTTGAAAGTCTATTTTTCCATCTAGCAGTAGCTGGACACAGCATCTGCTGAGCCTACCTATGCACATTCATCAACTAATATTCTACTCCTAGTTTCTTTTGCATCCTGTCTCAAATACTTTATCCCAGCTGCAATTTAACACCCATGTATCAT
GAAATTGGTGATAAAGCTTGAATTGAGGACAGTATATTCTCAACATCTGAATTTAAATTGGCTCCTATGTCTTCTTAAAAGATCAACTAATATTTGTGGTTGATAAAATTATATCTATTCATAACTACTGTCCATACAAAGAGTGATTCGAGAGACTAATATACACAAATCCACATTTTAAGGGATTATCATTAGATTAT
GCTAGCTCGGTCTTGGTTTATTAGTGAG
>TRINITY_DN108355_c0_g1_i3 from sample A2 / Example unspliced isoform:TTATTGTGGTAGCTTTGGTGCACTTGACTATGGGATAGTTCAGAAAGTAAAATCACGATGGCGTTACTATGCAGCTGACCTATACCAGGAAAAACATCCTTTGGTCTTGTGCACGGATGATCCAGGTGTCTTCTCTACTACAATTTCTTGGGAATATGCTCTCGCTGCTTCATGTTTTGgtaagattgctgatgactgaa
ctttgcaaatcatttgttttgaattagattaaacttatattctcactaccgacttcttgttgcaattcccagAACTTACAAAAGTGGAGTTAC
Intron 4 GCAAGTTGGA ... TTCTGGCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 70.37 | 12 | 38 | 19 |
| A2 | 57.45 | 20 | 37 | 17 |
| A3 | 84.21 | 6 | 48 | 16 |
| A4 | 52.38 | 25 | 37 | 18 |
| A5 | 51.72 | 7 | 13 | 2 |
| A6 | 77.31 | 38 | 120 | 139 |
| A7 | 71.09 | 74 | 207 | 157 |
| A8 | 79.62 | 85 | 305 | 359 |
| A9 | 70.9 | 103 | 304 | 198 |
| A10 | 69.19 | 53 | 135 | 103 |
>TRINITY_DN100376_c0_g1_i2 from sample A5 / Example spliced isoformGGAGTCCACAACTTGTACGAATCCGGTCAAAGTACATAAAATAGAAACATGGCACGGGAATGTTGGAAATCAGAAATGCCATCATCACCATGATTGGAGATATAAGAGATAATTGAGCCTTTTACAGGGCAGGGCATATAACATGTAAGAGGCGACTCAACGCAGCATACGACGACGAGGAGAGCAGGAAGTAAGTGGAG
GGAAAGGGCAAAGGCAAAGCGCAGTTATGGCGGAGGAGTTAAAAGAGTGGTGCCGTTGTCTTCCGAAGGTTGAGCTTCACGCTCATCTCAATGGATCTATTCGCGATGCCACGCTACTAGAACTTGCAAGAGAGAGGAGCAAGAAGGGCCAATTAGTTCTTTCTGATGTTGAAGATGTCATCTTGAAAGAGGATCGCTCA
CTGCAGGAGTGCTTCAAGTTGTTTGACTTGATCCACGTGCTCACCACTGACCATGGTACCATTAGTAGAATTGCTAAAGAAGTGATTGAAGATTTTGCAGCAGAAAATGTCATTTACTTGGAGCTACGAACAACACCAAAGAAGAATGAAGCTATAGGTATGAGTAAGCGTTCATACGTGGAATCAGTTCTTGCTGGGTT
CAAGGCAGTAGAGACAGTGGAAGCAATTTTTTTGCCTATTGATGGAAATATGGAACAACTTGTTCCACCTGTGCAACCAAATGGTCCAGCTGAAGGACCTAGAATGTGCCGAATATTTGTCCGTCTGCTTTTAAGTATAGATCGTCGTGAGAATTTAGAGGGAGCGATGGAAACAGTTCAGCTGGCTTTAGATATGAGGA
ATTCTGGTGTAGTTGGCATTGATCTTTCAGGAAACCCTATAGTTGGAGAGTGGCAGACATTCTTACCAGCATTGACATGGGCCAGAAATCAAGGGCTTCCTATTACTCTTCATTGTGGAGAGGTACCAAACCGGCAGGAAATTCAAGGCATGCTGGACTTTCATCCTGAGAGACTTGGTCATGTGTGCTGCCTTGAAGAT
CCTGAATGGAAAACATTGAAGGCATCAGATATCCCGGTTGAGGTTTGCTTGACATCAAATGTCCGTACAGAATGCGTCACTTCAATAGCTGACCATCATTTTGCTGACCTATACCAGGAAAAACATCCTTTGGTCTTGTGCACGGATGATCCAGGTGTCTTCTCTACTACAATTTCTTGGGAATATGCTCTCGCTGCTTC
ATGTTTTGAACTTACAAAAGTGGAGTTACTCCGACTGGCAAAGGACGCAGTAAACTTCATATTTGCTGATGATAAACTGAAGCAAACTCTAAGGCTCATTATTGATGCAGCAGAGTGCGGCTTACTGATACCCGATGAAGATGCCGAAAAATAATTTAGACTTGTTTGTGAAAAAGGATTTTAATACCCCC
>TRINITY_DN100376_c0_g1_i5 from sample A5 / Example unspliced isoform:GGAGTCCACAACTTGTACGAATCCGGTCAAAGTACATAAAATAGAAACATGGCACGGGAATGTTGGAAATCAGAAATGCCATCATCACCATGATTGGAGATATAAGAGATAATTGAGCCTTTTACAGGGCAGGGCATATAACATGTAAGAGGCGACTCAACGCAGCATACGACGACGAGGAGAGCAGGAAGTAAGTGGAG
GGAAAGGGCAAAGGCAAAGCGCAGTTATGGCGGAGGAGTTAAAAGAGTGGTGCCGTTGTCTTCCGAAGGTTGAGCTTCACGCTCATCTCAATGGATCTATTCGCGATGCCACGCTACTAGAACTTGCAAGAGAGAGGAGCAAGAAGGGCCAATTAGTTCTTTCTGATGTTGAAGATGTCATCTTGAAAGAGGATCGCTCA
CTGCAGGAGTGCTTCAAGTTGTTTGACTTGATCCACGTGCTCACCACTGACCATGGTACCATTAGTAGAATTGCTAAAGAAGTGATTGAAGATTTTGCAGCAGAAAATGTCATTTACTTGGAGCTACGAACAACACCAAAGAAGAATGAAGCTATAGGTATGAGTAAGCGTTCATACGTGGAATCAGTTCTTGCTGGGTT
CAAGGCAGTAGAGACAGTGGAAGCAATTTTTTTGCCTATTGATGGAAATATGGAACAACTTGTTCCACCTGTGCAACCAAATGGTCCAGCTGAAGGACCTAGAATGTGCCGAATATTTGTCCGTCTGCTTTTAAGTATAGATCGTCGTGAGAATTTAGAGGGAGCGATGGAAACAGTTCAGCTGGCTTTAGATATGAGGA
ATTCTGGTGTAGTTGGCATTGATCTTTCAGGAAACCCTATAGTTGGAGAGTGGCAGACATTCTTACCAGCATTGACATGGGCCAGAAATCAAGGGCTTCCTATTACTCTTCATTGTGGAGAGGTACCAAACCGGCAGGAAATTCAAGGCATGCTGGACTTTCATCCTGAGAGACTTGGTCATGTGTGCTGCCTTGAAGAT
CCTGAATGGAAAACATTGAAGGCATCAGATATCCCGGTTGAGGTTTGCTTGACATCAAATGTCCGTACAGAATGCGTCACTTCAATAGCTGACCATCATTTTGCTGACCTATACCAGGAAAAACATCCTTTGGTCTTGTGCACGGATGATCCAGGTGTCTTCTCTACTACAATTTCTTGGGAATATGCTCTCGCTGCTTC
ATGTTTTGAACTTACAAAAGTGGAGTTACTCCGACTGGCAAAGGACGCAGTAAACTTCATATTTGCTGATGATAAACTGAAGCAAACTCTAAGGCTCATTATTGATGCAGCAGAGTGCGGCTTACTGATACCCGATGAAGATGCCGAAAAATAATTTAGACTTGgcaagttggataattatattggactatggcatcctc
tttcttatttaaggttagagcaattaccaatggcagtgaaattgcctaaaaatgtgtgtccttaagatcttctgtggttgtttttacatcacacaggaactgaaatctattttaatacaatatctaagggaaagagatgcctttttagctgatccaaagcggcatccatttctggccagTTTGTGAAAAAGGATTTTAAT
ACTCCGACGAACTCGGAAGGATTTTAATACTCCGACGAACTTGGACTGTAAGTATTGTGCTCAAGATTTTGTTTCAAATCAATTTCTCTTAAATCTAGAAATAGCTTACAATCTAGACAGCAAAGGAATATAATTACAAATTAATAAAGTTGGGCTAGGAA
Intron 5 GCAAGTTGGA ... CATCACACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 55.91 | 28 | 38 | 33 |
| A2 | 42.86 | 32 | 37 | 11 |
| A3 | 72.28 | 14 | 48 | 25 |
| A4 | 42.29 | 36 | 36.8 | 16 |
| A5 | 53.33 | 7 | 13 | 3 |
| A6 | 59.67 | 98 | 120 | 170 |
| A7 | 58.08 | 143.3 | 207 | 190 |
| A8 | 58.38 | 237 | 305 | 360 |
| A9 | 58.89 | 193 | 304 | 249 |
| A10 | 51.62 | 112 | 135 | 104 |
>TRINITY_DN113678_c0_g1_i6 from sample A1 / Example spliced isoformGGAGTCCACAACTTGTACGAATCCGGTCAAAGTACATAAAATAGAAACATGGCACGGGAATGTTGGAAATCAGAAATGCCATCATCACCATGATTGGAGATATAAGAGATAATTGAGCCTTTTACAGGGCAGGGCATATAACATGTAAGAGGCGACTCAACGCAGCATACGACGACGAGGAGAGCAGGAAGTAAGTGGAG
GGAAAGGGCAAAGGCAAAGCGCAGTTATGGCGGAGGAGTTAAAAGAGTGGTGCCGTTGTCTTCCGAAGGTTGAGCTTCACGCTCATCTCAATGGATCTATTCGCGATGCCACGCTACTAGAACTTGCAAGAGAGAGGAGCAAGAAGGGCCAATTAGTTCTTTCTGATGTTGAAGATGTCATCTTGAAAGAGGATCGCTCA
CTGCAGGAGTGCTTCAAGTTGTTTGACTTGATCCACGTGCTCACCACTGACCATGGTACCATTAGTAGAATTGCTAAAGAAGTGATTGAAGATTTTGCAGCAGAAAATGTCATTTACTTGGAGCTACGAACAACACCAAAGAAGAATGAAGCTATAGGTATGAGTAAGCGTTCATACGTGGAATCAGTTCTTGCTGGGTT
CAAGGCAGTAGAGACAGTGGAAGCAATTTTTTTGCCTATTGATGGAAATATGGAACAACTTGTTCCACCTGTGCAACCAAATGGTCCAGCTGAAGGACCTAGAATGTGCCGAATATTTGTCCGTCTGCTTTTAAGTATAGATCGTCGTGAGAATTTAGAGGGAGCGATGGAAACAGTTCAGCTGGCTTTAGATATGAGGA
ATTCTGGTGTAGTTGGCATTGATCTTTCAGGAAACCCTATAGTTGGAGAGTGGCAGACATTCTTACCAGCATTGACATGGGCCAGAAATCAAGGGCTTCCTATTACTCTTCATTGTGGAGAGGTACCAAACCGGCAGGAAATTCAAGGCATGCTGGACTTTCATCCTGAGAGACTTGGTCATGTGTGCTGCCTTGAAGAT
CCTGAATGGAAAACATTGAAGGCATCAGATATCCCGGTTGAGGTTTGCTTGACATCAAATGTCCGTACAGAATGCGTCACTTCAATAGCTGACCATCATTTTGCTGACCTATACCAGGAAAAACATCCTTTGGTCTTGTGCACGGATGATCCAGGTGTCTTCTCTACTACAATTTCTTGGGAATATGCTCTCGCTGCTTC
ATGTTTTGAACTTACAAAAGTGGAGTTACTCCGACTGGCAAAGGACGCAGTAAACTTCATATTTGCTGATGATAAACTGAAGCAAACTCTAAGGCTCATTATTGATGCAGCAGAGTGCGGCTTACTGATACCCGATGAAGATGCCGAAAAATAATTTAGACTTGGAACTGAAATCTATTTTAATACAATATCTAAGGGAA
AGAGATGCCTTTTTAGCTGATCCAAAGCGGCATTCATTTCTGGCCAGTTTGTGAAAAAGGATTTTAATACTCCGACGAACTCGGAAGGATTTTAATACTCCGACGAACTTGGACTGTAAGTATTGTGCTCAAGATTTTGTTTCAAATCAATTTCTCTTAAATCTAGAAATAGCTTACAATCTAGACAGCAAAGGAATATA
ATTACAAATTAATAAAGTTGGGCTAGGAAACCATGATGGAAATACTGTAATGTTTGGGAGTTGTCACGAGTATCCTCATATCAACCTGCTGAAACTGAAACGGCTGTCATCTGAGTGACAAATATGGCGTGATAGAAGCCGTACATCCAAGGTGATATGCCCAACTGACACTTGTCTACTTTATATTTCTACAGACTGGA
CAGTTTTGCTTTTGAGCAAGGGTGTGCTGGGTTAGCCTGTGCACATGCATGGTTTGAAAGTCTATTTTTCCATCTAGCAGTAGCTGGACACAGCATCTGCTGAGCCTACCTATGCACATTCATCAACTAATATTCTACTCCTAGTTTCTTTTGCATCCTGTCTCAAATACTTTATCCCAGCTGCAATTTAACACCCATGT
ATCATGAAATTGGTGATAAAGCTTGAATTGAGGACAGTATATTCTCAACATCTGAATTTAAATTGGCTCCTATGTCTTCTTAAAAGATCAACTAATATTTGTGGTTGATAAAATTATATCTATTCATAACTACTGTCCATACAAAGAGTGATTCGAGAGACTAATATACACAAATCCACATTTTAAGGGATTATCATTAG
ATTATGCTAGCTCGGTCTTGGTTTATTAGTGAGGGCAACATACTATTAAGTTGTTCATCATGATTCCATTTTCTTTGTGGTTTGTCCCACTTGAATGTCATGCGATGTAAGTCCTATGTGATTTTGATGGAATAGTTGCCCCTCATACCTAGCATCTAAAATGTAGAAAGCCCATGTTATGTAGTGCAACCCCTGACCCT
AAGGTGTATCTCTTAAAGCAACCTTCTGATGTGGGATCATCCTTGGCATTGTAGCTATCTTGCACGTCTTCTTACAT
>TRINITY_DN113678_c0_g1_i5 from sample A1 / Example unspliced isoform:GGAGTCCACAACTTGTACGAATCCGGTCAAAGTACATAAAATAGAAACATGGCACGGGAATGTTGGAAATCAGAAATGCCATCATCACCATGATTGGAGATATAAGAGATAATTGAGCCTTTTACAGGGCAGGGCATATAACATGTAAGAGGCGACTCAACGCAGCATACGACGACGAGGAGAGCAGGAAGTAAGTGGAG
GGAAAGGGCAAAGGCAAAGCGCAGTTATGGCGGAGGAGTTAAAAGAGTGGTGCCGTTGTCTTCCGAAGGTTGAGCTTCACGCTCATCTCAATGGATCTATTCGCGATGCCACGCTACTAGAACTTGCAAGAGAGAGGAGCAAGAAGGGCCAATTAGTTCTTTCTGATGTTGAAGATGTCATCTTGAAAGAGGATCGCTCA
CTGCAGGAGTGCTTCAAGTTGTTTGACTTGATCCACGTGCTCACCACTGACCATGGTACCATTAGTAGAATTGCTAAAGAAGTGATTGAAGATTTTGCAGCAGAAAATGTCATTTACTTGGAGCTACGAACAACACCAAAGAAGAATGAAGCTATAGGTATGAGTAAGCGTTCATACGTGGAATCAGTTCTTGCTGGGTT
CAAGGCAGTAGAGACAGTGGAAGCAATTTTTTTGCCTATTGATGGAAATATGGAACAACTTGTTCCACCTGTGCAACCAAATGGTCCAGCTGAAGGACCTAGAATGTGCCGAATATTTGTCCGTCTGCTTTTAAGTATAGATCGTCGTGAGAATTTAGAGGGAGCGATGGAAACAGTTCAGCTGGCTTTAGATATGAGGA
ATTCTGGTGTAGTTGGCATTGATCTTTCAGGAAACCCTATAGTTGGAGAGTGGCAGACATTCTTACCAGCATTGACATGGGCCAGAAATCAAGGGCTTCCTATTACTCTTCATTGTGGAGAGGTACCAAACCGGCAGGAAATTCAAGGCATGCTGGACTTTCATCCTGAGAGACTTGGTCATGTGTGCTGCCTTGAAGAT
CCTGAATGGAAAACATTGAAGGCATCAGATATCCCGGTTGAGGTTTGCTTGACATCAAATGTCCGTACAGAATGCGTCACTTCAATAGCTGACCATCATTTTGCTGACCTATACCAGGAAAAACATCCTTTGGTCTTGTGCACGGATGATCCAGGTGTCTTCTCTACTACAATTTCTTGGGAATATGCTCTCGCTGCTTC
ATGTTTTGAACTTACAAAAGTGGAGTTACTCCGACTGGCAAAGGACGCAGTAAACTTCATATTTGCTGATGATAAACTGAAGCAAACTCTAAGGCTCATTATTGATGCAGCAGAGTGCGGCTTACTGATACCCGATGAAGATGCCGAAAAATAATTTAGACTTGgcaagttggataattatattggactatggcatcctc
tttcttatttaaggttagagcaattaccaatggcagtgaaattgcctaaaaatgtgtgtccttaagatcttctgtggttgtttttacatcacacagGAACTGAAATCTATTTTAATACAATATCTAAGGGAAAGAGATGCCTTTTTAGCTGATCCAAAGCGGCATTCATTTCTGGCCAGTTTGTGAAAAAGGATTTTAAT
ACTCCGACGAACTCGGAAGGATTTTAATACTCCGACGAACTTGGACTGTAAGTATTGTGCTCAAGATTTTGTTTCAAATCAATTTCTCTTAAATCTAGAAATAGCTTACAATCTAGACAGCAAAGGAATATAATTACAAATTAATAAAGTTGGGCTAGGAAACCATGATGGAAATACTGTAATGTTTGGGAGTTGTCACG
AGTATCCTCATATCAACCTGCTGAAACTGAAACGGCTGTCATCTGAGTGACAAATATGGCGTGATAGAAGCCGTACATCCAAGGTGATATGCCCAACTGACACTTGTCTACTTTATATTTCTACAGACTGGACAGTTTTGCTTTTGAGCAAGGGTGTGCTGGGTTAGCCTGTGCACATGCATGGTTTGAAAGTCTATTTT
TCCATCTAGCAGTAGCTGGACACAGCATCTGCTGAGCCTACCTATGCACATTCATCAACTAATATTCTACTCCTAGTTTCTTTTGCATCCTGTCTCAAATACTTTATCCCAGCTGCAATTTAACACCCATGTATCATGAAATTGGTGATAAAGCTTGAATTGAGGACAGTATATTCTCAACATCTGAATTTAAATTGGCT
CCTATGTCTTCTTAAAAGATCAACTAATATTTGTGGTTGATAAAATTATATCTATTCATAACTACTGTCCATACAAAGAGTGATTCGAGAGACTAATATACACAAATCCACATTTTAAGGGATTATCATTAGATTATGCTAGCTCGGTCTTGGTTTATTAGTGAGGGCAACATACTATTAAGTTGTTCATCATGATTCCA
TTTTCTTTGTGGTTTGTCCCACTTGAATGTCATGCGATGTAAGTCCTATGTGATTTTGATGGAATAGTTGCCCCTCATACCTAGCATCTAAAATGTAGAAAGCCCATGTTATGTAGTGCAACCCCTGACCCTAAGGTGTATCTCTTAAAGCAACCTTCTGATGTGGGATCATCCTTGGCATTGTAGCTATCTTGCACGTC
TTCTTACAT
Intron 6 GTAAGTATTG ... ATTTCTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 57.83 | 10.5 | 15.5 | 13 |
| A2 | 63.17 | 7.7 | 17.1 | 7 |
| A3 | 62.28 | 6.3 | 9.7 | 11 |
| A4 | 58.98 | 5.7 | 11.1 | 2 |
| A5 | 100 | 0 | 3.7 | 0 |
| A6 | 58.14 | 48 | 78.8 | 48 |
| A7 | 59.37 | 57.1 | 106.1 | 49 |
| A8 | 59.66 | 152.7 | 276.5 | 145 |
| A9 | 57.99 | 79.9 | 131.5 | 71 |
| A10 | 59.6 | 42.3 | 74 | 43 |
>TRINITY_DN34797_c0_g1_i2 from sample A6 / Example spliced isoformGGATGGAACTGTCTGAATTTGGCTTCAATCCTGGGCCAATAATTGAATCTAGCAAAAGGGATCCATATGACCTATCTTGTTTCTAGATTCTGCAGTATGTGCTATCTTCTTAATACCATAAATATTTAAGATATGCATCAAGCAATTTATTTTCTAATTATTGTGGTAGCTTTGGTGCACTTGACTATGGGATAGTTCAG
AAAGTAAAATCACGATGGCGTTACTATGCAGCTGACCTATACCAGGAAAAACATCCTTTGGTCTTGTGCACGGATGATCCAGGTGTCTTCTCTACTACAATTTCTTGGGAATATGCTCTCGCTGCTTCATGTTTTGAACTTACAAAAGTGGAGTTACTCCGACTGGCAAAGGACGCAGTAAACTTCATATTTGCTGATGA
TAAACTGAAGCAAACTCTAAGGCTCATTATTGATGCAGCAGAGTGCGGCTTACTGATACCCGATGAAGATGCCGAAAAATAATTTAGACTTGGAACTGAAATCTATTTTAATACAATATCTAAGGGAAAGAGATGCCTTTTTAGCTGATCCAAAGCGGCATTCATTTCTGGCCAGTTTGTGAAAAAGGATTTTAATACTC
CGACGAACTCGGAAGGATTTTAATACTCCGACGAACTTGGACTACTGGACAGTTTTGCTTTTGAGCAAGGGTGTGCTGGGTTAGCCTGTGCACATGCATGGTTTGAAAGTCTATTTTTCCATCTAGCAGTAGCTGGACACAGCATCTGCTGAGCCTACCTATGCACATTCATCAACTAATATTCTACTCCTAGTTTCTTT
TGCATCCTGTCTCAAATACTTTATCCCAGCTGCAATTTAACACCCATGTATCATGAAATTGGTGATAAAGCTTGAATTGAGGACAGTATATTCTCAACATCTGAATTTAAATTGGCTCCTATGTCTTCTTAAAAGATCAACTAATATTTGTGGTTGATAAAATTATATCTATTCATAACTACTGTCCATACAAAGAGTGA
TTCGAGAGACTAATATACACAAATCCACATTTTAAGGGATTATCATTAGATTATGCTAGCTCGGTCTTGGTTTATTAGTGAGGGCAACATACTATTAAGTTGTTCATCATGATTCCATTTTCTTTGTGGTTTGTCCCACTTGAATGTCATGCGATGCAAGTCCTATGTGATTTTGATGGAATAGTTGCCCCTCATACCTA
GCATCTAAAATGTAGAAAGCCCATGTTATGTAGTGCAACCCCTGACCCTAAGGTGTATCTCTTAAAGCAACCTTCTGATGTGGGATCATCCTTGGCATTGTAGCTATCTTGCACGTCTTCTTACATTTGTTTAATTTTGGTTCTATTTTGTGATTAGAAAAAAATGTAATGTAG
>TRINITY_DN34797_c0_g1_i3 from sample A6 / Example unspliced isoform:TTTCAATAATTCTTTGAAGAATAATTTCCGGCACTTTAAAATCTCCTATCCACGGAACGGAGTCCACAACTTGTACGAATCCGGTCAAAGTACATAAAATAGAAACATGGCACGGGAATGTTGGAAATCAGAAATGCCATCATCACCATGATTGGAGATATAAGAGATAATTGAGCCTTTTACAGGGCAGGGCATATAAC
ATGTAAGAGGCGACTCAACGCAGCATACGACGACGAGGAGAGCAGGAAGTAAGTGGAGGGAAAGGGCAAAGGCAAAGCGCAGTTATGGCGGAGGAGTTAAAAGAGTGGTGCCGTTGTCTTCCGAAGGTTGAGCTTCACGCTCATCTCAATGGATCTATTCGCGATGCCACGCTACTAGAACTTGCAAGAGAGAGGAGCAA
GAAGGGCCAATTAGTTCTTTCTGATGTTGAAGATGTCATCTTGAAAGAGGATCGCTCACTGCAGGAGTGCTTCAAGTTGTTTGACTTGATCCACGTGCTCACCACTGACCATGGTACCATTAGTAGAATTGCTAAAGAAGTGATTGAAGATTTTGCAGCAGAAAATGTCATTTACTTGGAGCTACGAACAACACCAAAGA
AGAATGAAGCTATAGGTATGAGTAAGCGTTCATACGTGGAATCAGTTCTTGCTGGGTTCAAGGCAGTAGAGACAGTGGAAGCAATTTTTTTGCCTATTGATGGAAATATGGAACAACTTGTTCCACCTGTGCAACCAAATGGTCCAGCTGAAGGACCTAGAATGTGCCGAATATTTGTCCGTCTGCTTTTAAGTATAGAT
CGTCGTGAGAATTTAGAGGGAGCGATGGAAACAGTTCAGCTGGCTTTAGATATGAGGAATTCTGGTGTAGTTGGCATTGATCTTTCAGGAAACCCTATAGTTGGAGAGTGGCAGACATTCTTACCAGCATTGACATGGGCCAGAAATCAAGGGCTTCCTATTACTCTTCATTGTGGAGAGGTACCAAACCGGCAGGAAAT
TCAAGGCATGCTGGACTTTCATCCTGAGAGACTTGGTCATGTGTGCTGCCTTGAAGATCCTGAATGGAAAACATTGAAGGCATCAGATATCCCGGTTGAGGTTTGCTTGACATCAAATGTCCGTACAGAATGCGTCACTTCAATAGCTGACCATCATTTTGCTGACCTATACCAGGAAAAACATCCTTTGGTCTTGTGCA
CGGATGATCCAGGTGTCTTCTCTACTACAATTTCTTGGGAATATGCTCTCGCTGCTTCATGTTTTGAACTTACAAAAGTGGAGTTACTCCGACTGGCAAAGGACGCAGTAAACTTCATATTTGCTGATGATAAACTGAAGCAAACTCTAAGGCTCATTATTGATGCAGCAGAGTGCGGCTTACTGATACCCGATGAAGAT
GCCGAAAAATAATTTAGACTTGGCAAGTTGGATAATTATATTGGACTATGGCATCCTCTTTCTTATTTAAGGTTAGAGCAATTACCAATGGCAGTGAAATTGCCTAAAAATGTGTGTCCTTAAGATCTTCTGTGGTTGTTTTTACATCACACAGGAACTGAAATCTATTTTAATACAATATCTAAGGGAAAGAGATGCCT
TTTTAGCTGATCCAAAGCGGCATTCATTTCTGGCCAGTTTGTGAAAAAGGATTTTAATACTCCGACGAACTCGGAAGGATTTTAATACTCCGACGAACTTGGACTgtaagtattgtgctcaagattttgtttcaaatcaatttctcttaaatctagaaatagcttacaatctagacagcaaaggaatataattacaaatt
aataaagttgggctaggaaaccatgatggaaatactgtaatgtttgggagttgtcacgagtatcctcatatcaacctgctgaaactgaaacggctgtcatctgagtgacaaatatggcgtgatagaagccgtacatccaaggtgatatgcccaactgacacttgtctactttatatttctacagACTGGACAGTTTTGCT
TTTGAGCAAGGGTGTGCTGGGTTAGCCTGTGCACATGCATGGTTTGAAAGTCTATTTTTCCATCTAGCAGTAGCTGGACACAGCATCTGCTGAGCCTACCTATGCACATTCATCAACTAATATTCTACTCCTAGTTTCTTTTGCATCCTGTCTCAAATACTTTATCCCAGCTGCAATTTAACACCCATGTATCATGAAAT
TGGTGATAAAGCTTGAATTGAGGACAGTATATTCTCAACATCTGAATTTAAATTGGCTCCTATGTCTTCTTAAAAGATCAACTAATATTTGTGGTTGATAAAATTATATCTATTCATAACTACTGTCCATACAAAGAGTGATTCGAGAGACTAATATACACAAATCCACATTTTAAGGGATTATCATTAGATTATGCTAG
CTCGGTCTTGGTTTATTAGTGAGGGCAACATACTATTAAGTTGTTCATCATGATTCCATTTTCTTTGTGGTTTGTCCCACTTGAATGTCATGCGATGCAAGTCCTATGTGATTTTGATGGAATAGTTGCCCCTCATACCTAGCATCTAAAATGTAGAAAGCCCATGTTATGTAGTGCAACCCCTGACCCTAAGGTGTATC
TCTTAAAGCAACCTTCTGATGTGGGATCATCCTTGGCATTGTAGCTATCTTGCACGTCTTCTTACATTTGTTTAATTTTGGTTCTATTTTGTGATTAGAAAAAAATGTAATGTAG
Intron 7 GTACATTAAC ... ACGATTGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 13.62 | 92 | 13 | 16 |
| A2 | 15.31 | 83 | 10 | 20 |
| A3 | 11.79 | 101 | 12 | 15 |
| A4 | 15.38 | 66 | 13 | 11 |
| A5 | 18.99 | 32 | 5 | 10 |
| A6 | 11.97 | 239 | 25 | 40 |
| A7 | 13.74 | 471 | 50 | 100 |
| A8 | 12.59 | 413 | 46 | 73 |
| A9 | 10.57 | 499 | 33 | 85 |
| A10 | 10.74 | 428 | 37 | 66 |
>TRINITY_DN100376_c0_g1_i2 from sample A5 / Example spliced isoformGGAGTCCACAACTTGTACGAATCCGGTCAAAGTACATAAAATAGAAACATGGCACGGGAATGTTGGAAATCAGAAATGCCATCATCACCATGATTGGAGATATAAGAGATAATTGAGCCTTTTACAGGGCAGGGCATATAACATGTAAGAGGCGACTCAACGCAGCATACGACGACGAGGAGAGCAGGAAGTAAGTGGAG
GGAAAGGGCAAAGGCAAAGCGCAGTTATGGCGGAGGAGTTAAAAGAGTGGTGCCGTTGTCTTCCGAAGGTTGAGCTTCACGCTCATCTCAATGGATCTATTCGCGATGCCACGCTACTAGAACTTGCAAGAGAGAGGAGCAAGAAGGGCCAATTAGTTCTTTCTGATGTTGAAGATGTCATCTTGAAAGAGGATCGCTCA
CTGCAGGAGTGCTTCAAGTTGTTTGACTTGATCCACGTGCTCACCACTGACCATGGTACCATTAGTAGAATTGCTAAAGAAGTGATTGAAGATTTTGCAGCAGAAAATGTCATTTACTTGGAGCTACGAACAACACCAAAGAAGAATGAAGCTATAGGTATGAGTAAGCGTTCATACGTGGAATCAGTTCTTGCTGGGTT
CAAGGCAGTAGAGACAGTGGAAGCAATTTTTTTGCCTATTGATGGAAATATGGAACAACTTGTTCCACCTGTGCAACCAAATGGTCCAGCTGAAGGACCTAGAATGTGCCGAATATTTGTCCGTCTGCTTTTAAGTATAGATCGTCGTGAGAATTTAGAGGGAGCGATGGAAACAGTTCAGCTGGCTTTAGATATGAGGA
ATTCTGGTGTAGTTGGCATTGATCTTTCAGGAAACCCTATAGTTGGAGAGTGGCAGACATTCTTACCAGCATTGACATGGGCCAGAAATCAAGGGCTTCCTATTACTCTTCATTGTGGAGAGGTACCAAACCGGCAGGAAATTCAAGGCATGCTGGACTTTCATCCTGAGAGACTTGGTCATGTGTGCTGCCTTGAAGAT
CCTGAATGGAAAACATTGAAGGCATCAGATATCCCGGTTGAGGTTTGCTTGACATCAAATGTCCGTACAGAATGCGTCACTTCAATAGCTGACCATCATTTTGCTGACCTATACCAGGAAAAACATCCTTTGGTCTTGTGCACGGATGATCCAGGTGTCTTCTCTACTACAATTTCTTGGGAATATGCTCTCGCTGCTTC
ATGTTTTGAACTTACAAAAGTGGAGTTACTCCGACTGGCAAAGGACGCAGTAAACTTCATATTTGCTGATGATAAACTGAAGCAAACTCTAAGGCTCATTATTGATGCAGCAGAGTGCGGCTTACTGATACCCGATGAAGATGCCGAAAAATAATTTAGACTTGTTTGTGAAAAAGGATTTTAATACCCCC
>TRINITY_DN100376_c0_g1_i1 from sample A5 / Example unspliced isoform:GGAGTCCACAACTTGTACGAATCCGGTCAAAGTACATAAAATAGAAACATGGCACGGGAATGTTGGAAATCAGAAATGCCATCATCACCATGATTGGAGATATAAGAGATAATTGAGCCTTTTACAGGGCAGGGCATATAACATGTAAGAGGCGACTCAACGCAGCATACGACGACGAGGAGAGCAGGAAGTAAGTGGAG
GGAAAGGGCAAAGGCAAAGCGCAGTTATGGCGGAGGAGTTAAAAGAGTGGTGCCGTTGTCTTCCGAAGGTTGAGCTTCACGCTCATCTCAATGGATCTATTCGCGATGCCACGCTACTAGAACTTGCAAGAGAGAGGAGCAAGAAGGGCCAATTAGTTCTTTCTGATGTTGAAGATGTCATCTTGAAAGAGGATCGCTCA
CTGCAGGAGTGCTTCAAGTTGTTTGACTTGATCCACGTGCTCACCACTGACCATGGTACCATTAGTAGAATTGCTAAAGAAGTGATTGAAGATTTTGCAGCAGAAAATGTCATTTACTTGGAGCTACGAACAACACCAAAGAAGAATGAAGCTATAGGTATGAGTAAGCGTTCATACGTGGAATCAGTTCTTGCTGGGTT
CAAGGCAGTAGAGACAGTGGAAGCAATTTTTTTGCCTATTGATGGAAATATGGAACAACTTGTTCCACCTGTGCAACCAAATGGTCCAGCTGAAGGACCTAGAATGTGCCGAATATTTGTCCGTCTGCTTTTAAGTATAGATCGTCGTGAGAATTTAGAGGGAGCGATGGAAACAGTTCAGCTGGCTTTAGATATGAGGA
ATTCTGGTGTAGTTGGCATTGATCTTTCAGGAAACCCTATAGTTGGAGAGTGgtacattaactcttttctatcttcactagtctccaataaaaggctttttctttagttttttcttatcatgattgaaagcacatttaactggctttcttacttgtgttagtagcatgtgaacagtactaatggctaactaatacgattg
tagGCAGACATTCTTACCAGCATTGACATGGGCCAGAAATCAAGGGCTTCCTATTACTCTTCATTGTGGAGAGGTACCAAACCGGCAGGAAATTCAAGGCATGCTGGACTTTCATCCTGAGAGACTTGGTCATGTGTGCTGCCTTGAAGATCCTGAATGGAAAACATTGAAGGCATCAGATATCCCGGTTGAGGTTTGCT
TGACATCAAATGTCCGTACAGAATGCGTCACTTCAATAGCTGACCATCATTTTGCTGACCTATACCAGGAAAAACATCCTTTGGTCTTGTGCACGGATGATCCAGGTGTCTTCTCTACTACAATTTCTTGGGAATATGCTCTCGCTGCTTCATGTTTTGAACTTACAAAAGTGGAGTTACTCCGACTGGCAAAGGACGCA
GTAAACTTCATATTTGCTGATGATAAACTGAAGCAAACTCTAAGGCTCATTATTGATGCAGCAGAGTGCGGCTTACTGATACCCGATGAAGATGCCGAAAAATAATTTAGACTTGTTTGTGAAAAAGGATTTTAATACCCCC