sp|Q8RX26|RGLG3_ARATH ----> E3 ubiquitin-protein ligase RGLG3
Intron 1 GTGCTGTTTT ... ATTCCACCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 50 | 16 | 16 | 5 |
| A2 | 44.23 | 29 | 23 | 10 |
| A3 | 50 | 16 | 16 | 2 |
| A4 | 60 | 4 | 6 | 1 |
| A5 | 55.56 | 8 | 10 | 0 |
| A6 | 39.02 | 25 | 16 | 3 |
| A7 | 43.06 | 41 | 31 | 10 |
| A8 | 41.76 | 53 | 38 | 8 |
| A9 | 44.44 | 80 | 64 | 7 |
| A10 | 41.56 | 45 | 32 | 4 |
>TRINITY_DN48340_c1_g2_i9 from sample A7 / Example spliced isoformAATGGGCATTGTGGAAAAGAGTGGGGGCCAGTATCATGTCCTTCTTGTTGTTGCAGATGGACAGGTAACCAGGAGTAGTGATACAAGATCCAGGCAGTTAAGCTTACAAGAACAGAAGACAATTGATGCTATAGCTACTGCAAGTCATTATCCTTTATCAATAATACTGGTTGGAGTTGGTGATGGACCCTGGGATGTGA
TGCAAGAATTTGATGATAAACTCCCTCACCGTGAATTTGACAATTTTCAGTTCTATTCTTCTGGAGTGACAGTGTGTGTGTGTGCGCCAGTGCACATGTGGTATAGAGAGAGGCAGAAGAGGTAGTGACTGGGATTTCAAACCTGCATGCTGAATCTAGTGGTTTGGGGAAGACGCCAGTTTAGGTTTCTTTCCTGATGG
CCATAATAAGCATAGCAAGTTAATCTAGCATCTTTTTCCTGTTTGTAAAAGTCTTATGATCTTCACTCTCCTGGCGAACAAGTTTGATGCATCAGTTTCCTTAGTTTGTTATGCATGGATTGTAGCTTTTGCCTGAAGTACTACTTATGCCCTAAAATGTTCTCAGTTGGGTGTTTGATTTGTGTGGAATTTACTTTTTA
TAGCCAACATGTTTGGTGCCTCATCATACTAGTCTTTTGGTTATGACTGATTTGGAGTTTCATCCATAGAACAGTTTGTGCACTTTTATTGAATTAATGCCGCATATGAAGCCATCAAGCTCGGCGAACAGTTATGTTGGCCTCTGATATGGAGTTGCATCCCTTGTGCAGTTTGTGAACTTTACAAGCATCATGTCAAA
AAATCTGCCACAATCTGTGAAAGAAGCAGCTTTTGCACTTGCTGCACTTATGGAGATCCCATTTCAGTATAGAGCAACACTCGAACTCAATATTTTGGGTCAATGTGTGGGAAGGGCTCCAAATATAGTGCCTCGTAATCCTCCTTTGCCAATGATTCAACATGATGCTGCTTCCTCAAATTTTCCAGGGTCCACAACCC
ACCAATCTACAGCTTCACATAGCATCAGTTCTATAGGGAATTCCCCAGCAAGAATGAGCTCAGAAAGTAATGCAGAGGTTTGCCCCATTTGTTTGACCAATTCTAGAGACATGGCACTTGGTTGTGGACATTTGACTTGTAGGAGTTGTAGCCAAAATTTGTCAAACTGCCCCTTATGTCGTGCACCCATCTTGACACGG
TTGAGATTGTACTCTTCTTGAAGATTCATTCATCCTACTGGTAATGGGTTCATTCCTGATGGATGATTTTGGTAATGGTTATGGGTGAATATAAAGGTGAGATTTAAAAGAAAACTTCATTTCTTTGTCTCTCTTAGTAGCACCATAAGACTGCAGATATATGTGCACTGCAACTGATTGAATTGTGGAATATGATATCG
AGTCTGCAGATTTTACTTTGGTACTAGCTTCATAACAAAAACTGACTGATTTCAAGATGCATGTGCACATTGTATCTAGAACTAGGAAAAGTTTTCTTGCTTTGCACCATGTTTACATTTTGTATCAATGAGAAAACCGAAGGAATATTCTCCTCTTTATAAATGTGTTTGGGTCAGTGCTACATGGGGACTTGTTCCCG
AGGATAGGGGATGTGCTCCCCATGCTCCCTGGTTGTGGGTACTCCAATGGGGACATTTCTCTACGTCCTCTTTTTGGGGGATGCAAGGAAACATACTAGGGGAGTGACCCTCTCAAAAAATGAGATGCTCCCATGCTCCCTTTTTGCAAAAGTCTGTTCTGAAAACCCCCTCCCTGGTAATCACTGCTAATATTAAAGTT
GACATTCTCCTTTATCT
>TRINITY_DN48340_c1_g2_i1 from sample A7 / Example unspliced isoform:AATGGGCATTGTGGAAAAGAGTGGGGGCCAGTATCATGTCCTTCTTGTTGTTGCAGATGGACAGGTAACCAGGAGTAGTGATACAAGATCCAGGCAGTTAAGCTTACAAGAACAGAAGACAATTGATGCTATAGCTACTGCAAGTCATTATCCTTTATCAATAATACTGGTTGGAGTTGGTGATGGACCCTGGGATGTGA
TGCAAGAATTTGATGATAAACTCCCTCACCGTGAATTTGACAATTTTCAGgtgctgttttgttgcatttaaactcaaatttcttgtttttctttatttacttctgtctatattggtgtggatgcaaatataactgtatgctagttgtgatttaagtggcaaagattaatagctgctacccatgattccaccagTTCTATT
CTTCTGGAGTGACAGTGTGTGTGTGTGCGCCAGTGCACATGTGGTATAGAGAGAGGCAGAAGAGGTAGTGACTGGGATTTCAAACCTGCATGCTGAATCTAGTGGTTTGGGGAAGACGCCAGTTTAGGTTTCTTTCCTGATGGCCATAATAAGCATAGCAAGTTAATCTAGCATCTTTTTCCTGTTTGTAAAAGTCTTAT
GATCTTCACTCTCCTGGCGAACAAGTTTGATGCATCAGTTTCCTTAGTTTGTTATGCATGGATTGTAGCTTTTGCCTGAAGTACTACTTATGCCCTAAAATGTTCTCAGTTGGGTGTTTGATTTGTGTGGAATTTACTTTTTATAGCCAACATGTTTGGTGCCTCATCATACTAGTCTTTTGGTTATGACTGATTTGGAG
TTTCATCCATAGAACAGTTTGTGCACTTTTATTGAATTAATGCCGCATATGAAGCCATCAAGCTCGGCGAACAGTTATGTTGGCCTCTGATATGGAGTTGCATCCCTTGTGCAGTTTGTGAACTTTACAAGCATCATGTCAAAAAATCTGCCACAATCTGTGAAAGAAGCAGCTTTTGCACTTGCTGCACTTATGGAGAT
CCCATTTCAGTATAGAGCAACACTCGAACTCAATATTTTGGGTCAATGTGTGGGAAGGGCTCCAAATATAGTGCCTCGTAATCCTCCTTTGCCAATGATTCAACATGATGCTGCTTCCTCAAATTTTCCAGGGTCCACAACCCACCAATCTACAGCTTCACATAGCATCAGTTCTATAGGGAATTCCCCAGCAAGAATGA
GCTCAGAAAGTAATGCAGAGGTTTGCCCCATTTGTTTGACCAATTCTAGAGACATGGCACTTGGTTGTGGACATTTGACTTGTAGGAGTTGTAGCCAAAATTTGTCAAACTGCCCCTTATGTCGTGCACCCATCTTGACACGGTTGAGATTGTACTCTTCTTGAAGATTCATTCATCCTACTGGTAATGGGTTCATTCCT
GATGGATGATTTTGGTAATGGTTATGGGTGAATATAAAGGTGAGATTTAAAAGAAAACTTCATTTCTTTGTCTCTCTTAGTAGCACCATAAGACTGCAGATATATGTGCACTGCAACTGATTGAATTGTGGAATATGATATCGAGTCTGCAGATTTTACTTTGGTACTAGCTTCATAACAAAAACTGACTGATTTCAAGA
TGCATGTGCACATTGTATCTAGAACTAGGAAAAGTTTTCTTGCTTTGCACCATGTTTACATTTTGTATCAATGAGAAAACCGAAGGAATATTCTCCTCTTTATAAATGTGTTTGGGTCAGTGCTACATGGGGACTTGTTCCCGAGGATAGGGGATGTGCTCCCCATGCTCCCTGGTTGTGGGTACTCCAATGGGGACATT
TCTCTACGTCCTCTTTTTGGGGGATGCAAGGAAACATACTAGGGGAGTGACCCTCTCAAAAAATGAGATGCTCCCATGCTCCCTTTTTGCAAAAGTCTGTTCTGAAAACCCCCTCCCTGGTAATCACTGCTAATATTAAAGTTGACATTCTCCTTTATCT
Intron 2 GTACTTGTAT ... TTATTTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 23.35 | 31.4 | 15 | 4 |
| A2 | 33.33 | 25 | 16 | 9 |
| A3 | 22.87 | 37.1 | 8.8 | 13 |
| A4 | 37.66 | 16.6 | 7 | 13 |
| A5 | 32.62 | 14.4 | 9.5 | 4 |
| A6 | 19.51 | 77.9 | 17.5 | 20 |
| A7 | 28.93 | 97.6 | 46 | 33 |
| A8 | 24.49 | 114.4 | 41 | 33 |
| A9 | 22.91 | 79.3 | 24.5 | 22 |
| A10 | 24.71 | 70.9 | 19.3 | 27 |
>TRINITY_DN96286_c0_g1_i3 from sample A5 / Example spliced isoformGAGTTGGTGATGGACCCTGGGATGTGATGCAAGAATTTGATGATACACTCCCTCACCGTGAATTTGACAATTTTCAGTTTGTGAACTTTACAAGCATCATGTCAAAAAATCTGCCACAATCTGTGAAAGAAGCAGCTTTTGCACTTGCTGCACTTATGGAGATCCCATTTCAGTATAGAGCAACACTCGAACTCAATATT
TTGGGTCAATGTGTGGGAAGGGCTCCAAATATAGTGCCTCGTAATCCTCCTTTGCCAATGATTCAACATGATGCTGCTTCCTCAAATTTTCCAGGGTCCACAACCCACCAATCTACAGCTTCACATAGCATCAGTTCTATAGGGAATTCCCCAGCAAGAATGAGCTCAGAAAGTAATGCAGAGGTTTGCCCCATTTGTTT
GACCAATTCTAGAGACATGGCACTTGGTTGTGGACATTTGACTTGTAGGAGTTGTAGCCAAAATTTGTCAAACTGCCCCTTATGTCATGCACCCATCTTGACACGGTTGAGATTGTACTCTTCTTGAAGATTCATTCAACCTACTGGTAATGGGTTCATTCCTGATGGATGATTTTGGTAATGGTTCTGGGTGAATATAA
AGGTGAGATTTAAAAGAAAACTTCATTTCTTTGTCTCTCTTAGTAGCACCATAAGACTGCAGATATATGTGCACTGCAACTGATTGAATTGTGGAATATGATATCGAGTCTGCAGATTTTACTTTGGTACTAGCTTCATAACAAAAACTGACTGATTTCAAGATGCATGTGCACATTGTATCTAGAACTAGGAAAAGTTT
TCTTGCTTTGCACCATGTTTACATTTTGTATCAATGAGAAAACCGAAGGAATATTCTCCTCTTTATAAATGTGTTTGGGTCAGTGCTACATGGGGACTTGTTCCCGAGGATAGGGGATGTGCTCCCCATGCTCCCTGGTTGTGGGTACTCCAATGGGGACATTTCTCTACGTCCTCTTTTTGGGGGATGCAAGGAAACAT
ACTAGGGGAGCGACCCTCTCAAAAAATGAGATGCTCCCATGCTCCCTTTTTGCAAAAGTCTGTTCTGAAAACCCCCTCCCTG
>TRINITY_DN96286_c0_g1_i1 from sample A5 / Example unspliced isoform:TTGATTTGTGTGGAATTTACTTTTTATAGCCAACATGTTTGGTGCCTCATCATACTAGTCTTTTGGTTATGACTGATTTGGAGTTTCATCCATAGAACATTTTGTGCACTTTTATTGAATTAATGCCGCATATGAAATCCATCAAGTTCGGCCAATAGTTATGTTGGCCTCTGATATGGAGTTGCATCCCTTGTGCAGTT
TGTGAACTTTACAAGCATCATGTCAAAAAATCTGCCACAATCTGTGAAAGAAGCAGCTTTTGCACTTGCTGCACTTATGGAGATCCCATTTCAGTATAGAGCAACACTCGAACTCAATATTTTGGGgtacttgtatagaatcaacttcactaatataatgtcttttgaaggttggctctgcttcttgtttcttcctccag
aagatcattttgatgttccttatttacagTCAATGTGTGGGAAGGGCTCCAAATATAGTGCCTCGTAATCCTCCTTTGCCAATGATTCAACATGATGCTGCTTCCTCAAATTTTCCAGGGTCCACAACCCACCAATCTACAGCTTCACATAGCATCAGTTCTATAGGGAATTCCCCAGCAAGAATGAGCTCAGAAAGTAA
TGCAGAGGTTTGCCCCATTTGTTTGACCAATTCTAGAGACATGGCACTTGGTTGTGGACATTTGACTTGTAGGAGTTGTAGCCAAAATTTGTCAAACTGCCCCTTATGTCATGCACCCATCTTGACACGGTTGAGATTGTACTCTTCTTGAAGATTCATTCAACCTACTGGTAATGGGTTCATTCCTGATGGATGATTTT
GGTAATGGTTCTGGGTGAATATAAAGGTGAGATTTAAAAGAAAACTTCATTTCTTTGTCTCTCTTAGTAGCACCATAAGACTGCAGATATATGTGCACTGCAACTGATTGAATTGTGGAATATGATATCGAGTCTGCAGATTTTACTTTGGTACTAGCTTCATAACAAAAACTGACTGATTTCAAGATGCATGTGCACAT
TGTATCTAGAACTAGGAAAAGTTTTCTTGCTTTGCACCATGTTTACATTTTGTATCAATGAGAAAACCGAAGGAATATTCTCCTCTTTATAAATGTGTTTGGGTCAGTGCTACATGGGGACTTGTTCCCGAGGATAGGGGATGTGCTCCCCATGCTCCCTGGTTGTGGGTACTCCAATGGGGACATTTCTCTACGTCCTC
TTTTTGGGGGATGCAAGGAAACATACTAGGGGAGCGACCCTCTCAAAAAATGAGATGCTCCCATGCTCCCTTTTTGCAAAAGTCTGTTCTGAAAACCCCCTCCCTG
Intron 3 GTAGATATTT ... TTACATCTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 27.29 | 22 | 8.4 | 5.7 |
| A2 | 13.6 | 24 | 3.8 | 2.4 |
| A3 | 42.03 | 13.8 | 10.3 | 4.5 |
| A4 | 37.68 | 19 | 11.3 | 8.3 |
| A5 | 43.86 | 9.4 | 7.5 | 5.5 |
| A6 | 18.39 | 65.8 | 15 | 13.7 |
| A7 | 25.07 | 63.8 | 21.7 | 17.2 |
| A8 | 21.36 | 108.6 | 29.9 | 20.9 |
| A9 | 17.01 | 100.2 | 20.7 | 23.3 |
| A10 | 25.86 | 71.2 | 25.3 | 5.6 |
>TRINITY_DN42213_c1_g1_i4 from sample A6 / Example spliced isoformTTTACAAGCATCATGTCAAAAAATCTGCCACAATCTGTGAAAGAAGCAGCTTTTGCACTTGCTGCACTTATGGAGATCCCATTTCAGTATAGAGCAACACTCGAACTCAATATTTTGGGGTACTTGTATAGAATCAACTTCACTAATATAATGTCTTTTGAAGGTTGGCTCTGCTTCTTGTTTCTTCCTCCAGAAGATCA
TTTTGATGTTCCTTATTTACAGTCAATGTGTGGGAAGGGCTCCAAATATAGTGCCTCGTAATCCTCCTTTGCCAATGATTCAACATGATGCTGCTTCCTCAAATTTTCCAGGGTCCACAACCCACCAATCTACAGCTTCACATAGCATCAGTTCTATAGGGAATTCCCCAGCAAGAATGAGCTCAGAAAGTAATGCAGAG
GTTTGCCCCATTTGTTTGACCAATTCTAGAGACATGGCACTTGGTTGTGGACATTTGACTTGTAGGAGTTGTAGCCAAAATTTGTCAAACTGCCCCTTATGTCGTGCACCCATCTTGACACGGTTGAGATTGTACTCTTCTTGAAGATTCATTCAACCTACTGGTAATGGGTTCATTCCTGATGGATGATTTTGGTAATG
GTTCTGGGTGAATATAAAGGTGAGATTTAAAAGAAAACTTCATTTCTTTGTCTCTCTTAGTAGCACCATAAGACTGCAGATATATGTGCACTGCAACTGATTGAATTGTGGAATATGATATCGAGTCTGCAGATTTTACTTTGGTACTAGCTTCATAACAAAAACTGACTGATTTCAAGATGCATGTGCACATTGTATCT
AGAACTAGGAAAAGTTTTCTTGCTTTGCACCATGTTTACATTTTGTATCAATGAGAAAACCGAAGGAATATTCTCCTCTTTATAAATGTGTTTGGGTCAGTGCTACATGGGGACTTGTTCCCAAGGATAGGGGATGTGCTCCCCATGCTCCCTGGTTGTGGGTACTCCAATGGGGACATTTCTCTACGTCCCCTTTTTGG
GGGATGCAAGGAAACATACTAGGGGAGCGACCCTCTCAAAAAATGAGATGCTCCCATGCTCCCTTTTTGCAAAAGTCTGTTCTGAAAACCCCCTCCCTGGTAATCACTGCTAATATTAAAGTTGACATTCTCC
>TRINITY_DN42213_c1_g1_i1 from sample A6 / Example unspliced isoform:CAGAAAGTAATGCAGAGgtagatatttccagttctgttgcagtatgcttatcatgcatgatcaatgggtgttttgcttctaagtgtacaatttgctgctattttaattctagctatgtaactatgacattttgaaaattctgttttatcttacatctagGTTTGCCCCATTTGTTTGACCAATTCTAGAGACATGGCACT
TGGTTGTGGACATTTGACTTGTAGGAGTTGTAGCCAAAATTTGTCAAACTGCCCCTTATGTCGTGCACCCATCTTGACACGGTTGAGATTGTACTCTTCTTGAAGATTCATTCAACCTACTGGTAATGGGTTCATTCCTGATGGATGATTTTGGTAATGGTTCTGGGTGAATATAAAGGTGAGATTTAAAAGAAAACTTC
ATTTCTTTGTCTCTCTTAGTAGCACCATAAGACTGCAGATATATGTGCACTGCAACTGATTGAATTGTGGAATATGATATCGAGTCTGCAGATTTTACTTTGGTACTAGCTTCATAACAAAAACTGACTGATTTCAAGATGCATGTGCACATTGTATCTAGAACTAGGAAAAGTTTTCTTGCTTTGCACCATGTTTACAT
TTTGTATCAATGAGAAAACCGAAGGAATATTCTCCTCTTTATAAATGTGTTTGGGTCAGTGCTACATGGGGACTTGTTCCCAAGGATAGGGGATGTGCTCCCCATGCTCCCTGGTTGTGGGTACTCCAATGGGGACATTTCTCTACGTCCCCTTTTTGGGGGATGCAAGGAAACATACTAGGGGAGCGACCCTCTCAAAA
AATGAGATGCTCCCATGCTCCCTTTTTGCAAAAGTCTGTTCTGAAAACCCCCTCCCTGGTAATCACTGCTAATATTAAAGTTGACATTCTCC
Intron 4 GTTGGCTCTG ... AATTTTCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 87.34 | 2 | 7 | 20.6 |
| A2 | 52.87 | 13 | 9 | 20.2 |
| A3 | 51.3 | 13 | 4 | 23.4 |
| A4 | 87.65 | 2 | 9 | 19.4 |
| A5 | 59.69 | 6 | 6 | 11.8 |
| A6 | 54.7 | 26 | 10 | 53 |
| A7 | 58.36 | 30 | 33 | 51.2 |
| A8 | 61.53 | 26 | 27 | 56.2 |
| A9 | 49.95 | 31 | 15 | 47.2 |
| A10 | 59.74 | 25 | 18 | 56.2 |
>TRINITY_DN48340_c1_g2_i5 from sample A7 / Example spliced isoformAATGGGCATTGTGGAAAAGAGTGGGGGCCAGTATCATGTCCTTCTTGTTGTTGCAGATGGACAGGTAACCAGGAGTAGTGATACAAGATCCAGGCAGTTAAGCTTACAAGAACAGAAGACAATTGATGCTATAGCTACTGCAAGTCATTATCCTTTATCAATAATACTGGTTGGAGTTGGTGATGGACCCTGGGATGTGA
TGCAAGAATTTGATGATAAACTCCCTCACCGTGAATTTGACAATTTTCAGTTTGTGAACTTTACAAGCATCATGTCAAAAAATCTGCCACAATCTGTGAAAGAAGCAGCTTTTGCACTTGCTGCACTTATGGAGATCCCATTTCAGTATAGAGCAACACTCGAACTCAATATTTTGGGGTACTTGTATAGAATCAACTTC
ACTAATATAATGTCTTTTGAAGGGTCCACAACCCACCAATCTACAGCTTCACATAGCATCAGTTCTATAGGGAATTCCCCAGCAAGAATGAGCTCAGAAAGTAATGCAGAGGTTTGCCCCATTTGTTTGACCAATTCTAGAGACATGGCACTTGGTTGTGGACATTTGACTTGTAGGAGTTGTAGCCAAAATTTGTCAAA
CTGCCCCTTATGTCGTGCACCCATCTTGACACGGTTGAGATTGTACTCTTCTTGAAGATTCATTCATCCTACTGGTAATGGGTTCATTCCTGATGGATGATTTTGGTAATGGTTATGGGTGAATATAAAGGTGAGATTTAAAAGAAAACTTCATTTCTTTGTCTCTCTTAGTAGCACCATAAGACTGCAGATATATGTGC
ACTGCAACTGATTGAATTGTGGAATATGATATCGAGTCTGCAGATTTTACTTTGGTACTAGCTTCATAACAAAAACTGACTGATTTCAAGATGCATGTGCACATTGTATCTAGAACTAGGAAAAGTTTTCTTGCTTTGCACCATGTTTACATTTTGTATCAATGAGAAAACCGAAGGAATATTCTCCTCTTTATAAATGT
GTTTGGGTCAGTGCTACATGGGGACTTGTTCCCGAGGATAGGGGATGTGCTCCCCATGCTCCCTGGTTGTGGGTACTCCAATGGGGACATTTCTCTACGTCCTCTTTTTGGGGGATGCAAGGAAACATACTAGGGGAGTGACCCTCTCAAAAAATGAGATGCTCCCATGCTCCCTTTTTGCAAAAGTCTGTTCTGAAAAC
CCCCTCCCTGGTAATCACTGCTAATATTAAAGTTGACATTCTCCTTTATCT
>TRINITY_DN48340_c1_g2_i4 from sample A7 / Example unspliced isoform:AATGGGCATTGTGGAAAAGAGTGGGGGCCAGTATCATGTCCTTCTTGTTGTTGCAGATGGACAGGTAACCAGGAGTAGTGATACAAGATCCAGGCAGTTAAGCTTACAAGAACAGAAGACAATTGATGCTATAGCTACTGCAAGTCATTATCCTTTATCAATAATACTGGTTGGAGTTGGTGATGGACCCTGGGATGTGA
TGCAAGAATTTGATGATAAACTCCCTCACCGTGAATTTGACAATTTTCAGTTTGTGAACTTTACAAGCATCATGTCAAAAAATCTGCCACAATCTGTGAAAGAAGCAGCTTTTGCACTTGCTGCACTTATGGAGATCCCATTTCAGTATAGAGCAACACTCGAACTCAATATTTTGGGGTACTTGTATAGAATCAACTTC
ACTAATATAATGTCTTTTGAAGgttggctctgcttcttgtttcttcctccagaagatcattttgatgttccttatttacagtcaatgtgtgggaagggctccaaatatagtgcctcgtaatcctcctttgccaatgattcaacatgatgctgcttcctcaaattttccagGGTCCACAACCCACCAATCTACAGCTTCAC
ATAGCATCAGTTCTATAGGGAATTCCCCAGCAAGAATGAGCTCAGAAAGTAATGCAGAGGTAGATATTTCCAGTTCTGTTGCAGTATGCTTATCATGCATGATCAATGGGTGTTTTGCTTCTAAGTGTACAATTTGCTGCTATTTTAATTCTAGCTATGTAACTATGACATTTTGAAAATTCTGTTTTATCTTACATCTA
GGTTTGCCCCATTTGTTTGACCAATTCTAGAGACATGGCACTTGGTTGTGGACATTTGGTGAGTATAGAGAAAACTAGACATCATTATTTTCCTGTTTTCTATAGGAAGTAAGCACTGCATAAATGCTTCAGTTTGTTTTTTGCAATGACATCAATTTTGTTTCAACAGACTTGTAGGAGTTGTAGCCAAAATTTGTCAA
ACTGCCCCTTATGTCGTGCACCCATCTTGACACGGTTGAGATTGTACTCTTCTTGAAGATTCATTCATCCTACTGGTAATGGGTTCATTCCTGATGGATGATTTTGGTAATGGTTATGGGTGAATATAAAGGTGAGATTTAAAAGAAAACTTCATTTCTTTGTCTCTCTTAGTAGCACCATAAGACTGCAGATATATGTG
CACTGCAACTGATTGAATTGTGGAATATGATATCGAGTCTGCAGATTTTACTTTGGTACTAGCTTCATAACAAAAACTGACTGATTTCAAGATGCATGTGCACATTGTATCTAGAACTAGGAAAAGTTTTCTTGCTTTGCACCATGTTTACATTTTGTATCAATGAGAAAACCGAAGGAATATTCTCCTCTTTATAAATG
TGTTTGGGTCAGTGCTACATGGGGACTTGTTCCCGAGGATAGGGGATGTGCTCCCCATGCTCCCTGGTTGTGGGTACTCCAATGGGGACATTTCTCTACGTCCTCTTTTTGGGGGATGCAAGGAAACATACTAGGGGAGTGACCCTCTCAAAAAATGAGATGCTCCCATGCTCCCTTTTTGCAAAAGTCTGTTCTGAAAA
CCCCCTCCCTGGTAATCACTGCTAATATTAAAGTTGACATTCTCCTTTATCT
Intron 5 GTGAGTATAG ... GTTTCAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 5 | 19 | 1 | 2 |
| A2 | 0 | 24 | 0 | 2 |
| A3 | 33.33 | 8 | 4 | 5 |
| A4 | 16.67 | 10 | 2 | 1 |
| A5 | 29.16 | 6 | 2.5 | 3 |
| A6 | 1.64 | 59.9 | 1 | 6.5 |
| A7 | 9.46 | 67 | 7 | 13.5 |
| A8 | 4.24 | 113 | 5 | 13 |
| A9 | 2.68 | 109 | 3 | 15.5 |
| A10 | 0 | 58 | 0 | 3.5 |
>TRINITY_DN48340_c1_g2_i7 from sample A7 / Example spliced isoformAATGGGCATTGTGGAAAAGAGTGGGGGCCAGTATCATGTCCTTCTTGTTGTTGCAGATGGACAGGTAACCAGGAGTAGTGATACAAGATCCAGGCAGTTAAGCTTACAAGAACAGAAGACAATTGATGCTATAGCTACTGCAAGTCATTATCCTTTATCAATAATACTGGTTGGAGTTGGTGATGGACCCTGGGATGTGA
TGCAAGAATTTGATGATAAACTCCCTCACCGTGAATTTGACAATTTTCAGTTTGTGAACTTTACAAGCATCATGTCAAAAAATCTGCCACAATCTGTGAAAGAAGCAGCTTTTGCACTTGCTGCACTTATGGAGATCCCATTTCAGTATAGAGCAACACTCGAACTCAATATTTTGGGTCAATGTGTGGGAAGGGCTCCA
AATATAGTGCCTCGTAATCCTCCTTTGCCAATGATTCAACATGATGCTGCTTCCTCAAATTTTCCAGGGTCCACAACCCACCAATCTACAGCTTCACATAGCATCAGTTCTATAGGGAATTCCCCAGCAAGAATGAGCTCAGAAAGTAATGCAGAGGTTTGCCCCATTTGTTTGACCAATTCTAGAGACATGGCACTTGG
TTGTGGACATTTGACTTGTAGGAGTTGTAGCCAAAATTTGTCAAACTGCCCCTTATGTCGTGCACCCATCTTGACACGGTTGAGATTGTACTCTTCTTGAAGATTCATTCATCCTACTGGTAATGGGTTCATTCCTGATGGATGATTTTGGTAATGGTTATGGGTGAATATAAAGGTGAGATTTAAAAGAAAACTTCATT
TCTTTGTCTCTCTTAGTAGCACCATAAGACTGCAGATATATGTGCACTGCAACTGATTGAATTGTGGAATATGATATCGAGTCTGCAGATTTTACTTTGGTACTAGCTTCATAACAAAAACTGACTGATTTCAAGATGCATGTGCACATTGTATCTAGAACTAGGAAAAGTTTTCTTGCTTTGCACCATGTTTACATTTT
GTATCAATGAGAAAACCGAAGGAATATTCTCCTCTTTATAAATGTGTTTGGGTCAGTGCTACATGGGGACTTGTTCCCGAGGATAGGGGATGTGCTCCCCATGCTCCCTGGTTGTGGGTACTCCAATGGGGACATTTCTCTACGTCCTCTTTTTGGGGGATGCAAGGAAACATACTAGGGGAGTGACCCTCTCAAAAAAT
GAGATGCTCCCATGCTCCCTTTTTGCAAAAGTCTGTTCTGAAAACCCCCTCCCTGGTAATCACTGCTAATATTAAAGTTGACATTCTCCTTTATCT
>TRINITY_DN48340_c1_g2_i4 from sample A7 / Example unspliced isoform:AATGGGCATTGTGGAAAAGAGTGGGGGCCAGTATCATGTCCTTCTTGTTGTTGCAGATGGACAGGTAACCAGGAGTAGTGATACAAGATCCAGGCAGTTAAGCTTACAAGAACAGAAGACAATTGATGCTATAGCTACTGCAAGTCATTATCCTTTATCAATAATACTGGTTGGAGTTGGTGATGGACCCTGGGATGTGA
TGCAAGAATTTGATGATAAACTCCCTCACCGTGAATTTGACAATTTTCAGTTTGTGAACTTTACAAGCATCATGTCAAAAAATCTGCCACAATCTGTGAAAGAAGCAGCTTTTGCACTTGCTGCACTTATGGAGATCCCATTTCAGTATAGAGCAACACTCGAACTCAATATTTTGGGGTACTTGTATAGAATCAACTTC
ACTAATATAATGTCTTTTGAAGGTTGGCTCTGCTTCTTGTTTCTTCCTCCAGAAGATCATTTTGATGTTCCTTATTTACAGTCAATGTGTGGGAAGGGCTCCAAATATAGTGCCTCGTAATCCTCCTTTGCCAATGATTCAACATGATGCTGCTTCCTCAAATTTTCCAGGGTCCACAACCCACCAATCTACAGCTTCAC
ATAGCATCAGTTCTATAGGGAATTCCCCAGCAAGAATGAGCTCAGAAAGTAATGCAGAGGTAGATATTTCCAGTTCTGTTGCAGTATGCTTATCATGCATGATCAATGGGTGTTTTGCTTCTAAGTGTACAATTTGCTGCTATTTTAATTCTAGCTATGTAACTATGACATTTTGAAAATTCTGTTTTATCTTACATCTA
GGTTTGCCCCATTTGTTTGACCAATTCTAGAGACATGGCACTTGGTTGTGGACATTTGgtgagtatagagaaaactagacatcattattttcctgttttctataggaagtaagcactgcataaatgcttcagtttgttttttgcaatgacatcaattttgtttcaacagACTTGTAGGAGTTGTAGCCAAAATTTGTCAA
ACTGCCCCTTATGTCGTGCACCCATCTTGACACGGTTGAGATTGTACTCTTCTTGAAGATTCATTCATCCTACTGGTAATGGGTTCATTCCTGATGGATGATTTTGGTAATGGTTATGGGTGAATATAAAGGTGAGATTTAAAAGAAAACTTCATTTCTTTGTCTCTCTTAGTAGCACCATAAGACTGCAGATATATGTG
CACTGCAACTGATTGAATTGTGGAATATGATATCGAGTCTGCAGATTTTACTTTGGTACTAGCTTCATAACAAAAACTGACTGATTTCAAGATGCATGTGCACATTGTATCTAGAACTAGGAAAAGTTTTCTTGCTTTGCACCATGTTTACATTTTGTATCAATGAGAAAACCGAAGGAATATTCTCCTCTTTATAAATG
TGTTTGGGTCAGTGCTACATGGGGACTTGTTCCCGAGGATAGGGGATGTGCTCCCCATGCTCCCTGGTTGTGGGTACTCCAATGGGGACATTTCTCTACGTCCTCTTTTTGGGGGATGCAAGGAAACATACTAGGGGAGTGACCCTCTCAAAAAATGAGATGCTCCCATGCTCCCTTTTTGCAAAAGTCTGTTCTGAAAA
CCCCCTCCCTGGTAATCACTGCTAATATTAAAGTTGACATTCTCCTTTATCT
Intron 6 GTGCTGTTTT ... CCTTGTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 17.65 | 86.5 | 16 | 19 |
| A2 | 20.55 | 84.5 | 23 | 18 |
| A3 | 10.13 | 93 | 16 | 3 |
| A4 | 7.06 | 48 | 6 | 1 |
| A5 | 21.17 | 34 | 10 | 7 |
| A6 | 8.78 | 187 | 16 | 17 |
| A7 | 9.32 | 282.5 | 31 | 23 |
| A8 | 13.46 | 269.5 | 38 | 41 |
| A9 | 15.88 | 273.5 | 64 | 30 |
| A10 | 13.11 | 200.5 | 32 | 25 |
>TRINITY_DN48340_c1_g2_i7 from sample A7 / Example spliced isoformAATGGGCATTGTGGAAAAGAGTGGGGGCCAGTATCATGTCCTTCTTGTTGTTGCAGATGGACAGGTAACCAGGAGTAGTGATACAAGATCCAGGCAGTTAAGCTTACAAGAACAGAAGACAATTGATGCTATAGCTACTGCAAGTCATTATCCTTTATCAATAATACTGGTTGGAGTTGGTGATGGACCCTGGGATGTGA
TGCAAGAATTTGATGATAAACTCCCTCACCGTGAATTTGACAATTTTCAGTTTGTGAACTTTACAAGCATCATGTCAAAAAATCTGCCACAATCTGTGAAAGAAGCAGCTTTTGCACTTGCTGCACTTATGGAGATCCCATTTCAGTATAGAGCAACACTCGAACTCAATATTTTGGGTCAATGTGTGGGAAGGGCTCCA
AATATAGTGCCTCGTAATCCTCCTTTGCCAATGATTCAACATGATGCTGCTTCCTCAAATTTTCCAGGGTCCACAACCCACCAATCTACAGCTTCACATAGCATCAGTTCTATAGGGAATTCCCCAGCAAGAATGAGCTCAGAAAGTAATGCAGAGGTTTGCCCCATTTGTTTGACCAATTCTAGAGACATGGCACTTGG
TTGTGGACATTTGACTTGTAGGAGTTGTAGCCAAAATTTGTCAAACTGCCCCTTATGTCGTGCACCCATCTTGACACGGTTGAGATTGTACTCTTCTTGAAGATTCATTCATCCTACTGGTAATGGGTTCATTCCTGATGGATGATTTTGGTAATGGTTATGGGTGAATATAAAGGTGAGATTTAAAAGAAAACTTCATT
TCTTTGTCTCTCTTAGTAGCACCATAAGACTGCAGATATATGTGCACTGCAACTGATTGAATTGTGGAATATGATATCGAGTCTGCAGATTTTACTTTGGTACTAGCTTCATAACAAAAACTGACTGATTTCAAGATGCATGTGCACATTGTATCTAGAACTAGGAAAAGTTTTCTTGCTTTGCACCATGTTTACATTTT
GTATCAATGAGAAAACCGAAGGAATATTCTCCTCTTTATAAATGTGTTTGGGTCAGTGCTACATGGGGACTTGTTCCCGAGGATAGGGGATGTGCTCCCCATGCTCCCTGGTTGTGGGTACTCCAATGGGGACATTTCTCTACGTCCTCTTTTTGGGGGATGCAAGGAAACATACTAGGGGAGTGACCCTCTCAAAAAAT
GAGATGCTCCCATGCTCCCTTTTTGCAAAAGTCTGTTCTGAAAACCCCCTCCCTGGTAATCACTGCTAATATTAAAGTTGACATTCTCCTTTATCT
>TRINITY_DN48340_c1_g2_i1 from sample A7 / Example unspliced isoform:AATGGGCATTGTGGAAAAGAGTGGGGGCCAGTATCATGTCCTTCTTGTTGTTGCAGATGGACAGGTAACCAGGAGTAGTGATACAAGATCCAGGCAGTTAAGCTTACAAGAACAGAAGACAATTGATGCTATAGCTACTGCAAGTCATTATCCTTTATCAATAATACTGGTTGGAGTTGGTGATGGACCCTGGGATGTGA
TGCAAGAATTTGATGATAAACTCCCTCACCGTGAATTTGACAATTTTCAGgtgctgttttgttgcatttaaactcaaatttcttgtttttctttatttacttctgtctatattggtgtggatgcaaatataactgtatgctagttgtgatttaagtggcaaagattaatagctgctacccatgattccaccagttctatt
cttctggagtgacagtgtgtgtgtgtgcgccagtgcacatgtggtatagagagaggcagaagaggtagtgactgggatttcaaacctgcatgctgaatctagtggtttggggaagacgccagtttaggtttctttcctgatggccataataagcatagcaagttaatctagcatctttttcctgtttgtaaaagtcttat
gatcttcactctcctggcgaacaagtttgatgcatcagtttccttagtttgttatgcatggattgtagcttttgcctgaagtactacttatgccctaaaatgttctcagttgggtgtttgatttgtgtggaatttactttttatagccaacatgtttggtgcctcatcatactagtcttttggttatgactgatttggag
tttcatccatagaacagtttgtgcacttttattgaattaatgccgcatatgaagccatcaagctcggcgaacagttatgttggcctctgatatggagttgcatcccttgtgcagTTTGTGAACTTTACAAGCATCATGTCAAAAAATCTGCCACAATCTGTGAAAGAAGCAGCTTTTGCACTTGCTGCACTTATGGAGAT
CCCATTTCAGTATAGAGCAACACTCGAACTCAATATTTTGGGTCAATGTGTGGGAAGGGCTCCAAATATAGTGCCTCGTAATCCTCCTTTGCCAATGATTCAACATGATGCTGCTTCCTCAAATTTTCCAGGGTCCACAACCCACCAATCTACAGCTTCACATAGCATCAGTTCTATAGGGAATTCCCCAGCAAGAATGA
GCTCAGAAAGTAATGCAGAGGTTTGCCCCATTTGTTTGACCAATTCTAGAGACATGGCACTTGGTTGTGGACATTTGACTTGTAGGAGTTGTAGCCAAAATTTGTCAAACTGCCCCTTATGTCGTGCACCCATCTTGACACGGTTGAGATTGTACTCTTCTTGAAGATTCATTCATCCTACTGGTAATGGGTTCATTCCT
GATGGATGATTTTGGTAATGGTTATGGGTGAATATAAAGGTGAGATTTAAAAGAAAACTTCATTTCTTTGTCTCTCTTAGTAGCACCATAAGACTGCAGATATATGTGCACTGCAACTGATTGAATTGTGGAATATGATATCGAGTCTGCAGATTTTACTTTGGTACTAGCTTCATAACAAAAACTGACTGATTTCAAGA
TGCATGTGCACATTGTATCTAGAACTAGGAAAAGTTTTCTTGCTTTGCACCATGTTTACATTTTGTATCAATGAGAAAACCGAAGGAATATTCTCCTCTTTATAAATGTGTTTGGGTCAGTGCTACATGGGGACTTGTTCCCGAGGATAGGGGATGTGCTCCCCATGCTCCCTGGTTGTGGGTACTCCAATGGGGACATT
TCTCTACGTCCTCTTTTTGGGGGATGCAAGGAAACATACTAGGGGAGTGACCCTCTCAAAAAATGAGATGCTCCCATGCTCCCTTTTTGCAAAAGTCTGTTCTGAAAACCCCCTCCCTGGTAATCACTGCTAATATTAAAGTTGACATTCTCCTTTATCT