sp|Q9C942|CSE_ARATH ----> Caffeoylshikimate esterase

Intron 1 GTAAGTAATC ... CTTTGACTAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	84.74	4	24	20
A2	77.14	4	15	12
A3	86.67	1	4	9
A4	92	1	11	10
A5	80	1	3	5
A6	50	3	3	3
A7	41.56	12	16	1
A8	48.39	8	12	3
A9	44.08	16	19	6
A10	50.08	13	19	7

>TRINITY_DN44504_c1_g1_i14 from sample A8 / Example spliced isoform

TGTCTGGATCTCTGGGCTTTTTTTGAGCTTTTGTCTGAGCTTTTTGTCTGGATCTCTGGGCTTTTTTGAGCTTTTGTCTGAGCTTTTTGTCCGTATGCGCTGCACCTTTTCAACGACTCGAAACCTCCATGCATCTAGCCGTTGGGAGGTTGGCTATTTATTTAAAGGCATTCGAACAGTGCGGTACACATTTGGGGAAT
GGCGTTCCAACAGTGCTCTGTCATGGTGAGGTTGTGAATTGCAATTTTTTTGGGAGTTTTAGTCTGCTTTCCCCATGCCTTTTGTTAACTGGTTATGGGTGGTGCTTCTTTCTGGTTTCTTTTTAGTTTTAGTCTCGTTTGTGTTTCTATGGTGCATTGTTGTATTTTTTTTGGATTTCTGTTTTTGTGTTTTCGGACTT
GATTCTTTGGTTTCTTTTATTGCTGTATATTTCATTATTGTTCTGTATTTTGTCTGGTTTTGCAATGTAATCCTCTGGTGGTTTTGCAATGCGAGAGAGTCAAACCTCTGTATCAATGAATTTCTTCAGTAGTTGCGGTTCTGACGGGGCTGATTAATTATTTACAATCCGGCATGGAGTTTGAGCGATTCCTGAGGAGT
TTGATCGATTCCTGAGGAGACCAAGTAAAGAAACCGTTCCTGGACAATGTTCCTCATGGTAAAGCTACGGTTCAGTTGATGGCAATTCTTTTATTAGCAATCACGTTTCTGCATAGATTTGTTATGATTGAAGCTCACTTCAAACGAAGGACCAGAGCATCCAGTTGAGAAATCTAGGATTAGTTTTGATTGAAGCTCAG
AGACGTAGTTCCAGAGGATTTACATTTAATGCAGTTAAAAAAACTGTCTACTTGTAATTGTGGGAGACACATGGCTGCACTTAATTCCTCTTTTAAAGGTTTCTAGGTGGTGTGCAAATTAAAGCCATATTTTCTTGAAGTGGGAAGAGATAATAATACTTGTAAATTGAAGATATTCCTGGTTTATATGCAGCCAGTGA
GAGATAGGTAACAATTAGCCTTGGGAAATAAATATTGCAAGTTATGGTACATTGCTAAACTTTTTCTTATGTCTTTAGCCTTTTGATCTGGCTCTTCTATTTCCACTGTGTGTGGTGTATATGTTTCTTTTGGTTTCTTTTAATCAGCGTCAGTGTTATTTATGGCTTTTTTATGTTAGTATGAGTTTCCAATCAGCGTG
CAGGAGTTTTCAATCCTGCTTTAATTGGAGAGAGCGTGTGCATATGGGAACGAAGTTTGTGCTATTTCCAAGAAGACCAACCAAAAGACAAAATTGGGTATTGGATGTACCCACATTATTTGTTGGACAACAACCTATTACACTGTAGGAATGCCTAGTGAGAATAAACTTGAAACCTGATAATAAATGTCAAAAGAACT
TAGTTCAGTTGTTGCATTATCTATTAGAATTATTCTAGGGTTTGGGTTTATTTTCAACCAATATTTTAG

>TRINITY_DN44504_c1_g1_i9 from sample A8 / Example unspliced isoform:

TGTCTGGATCTCTGGGCTTTTTTTGAGCTTTTGTCTGAGCTTTTTGTCTGGATCTCTGGGCTTTTTTGAGCTTTTGTCTGAGCTTTTTGTCCGTATGCGCTGCACCTTTTCAACGACTCGAAACCTCCATGCATCTAGCCGTTGGGAGGTTGGCTATTTATTTAAAGGCATTCGAACAGTGCGGTACACATTTGGGGAAT
GGCGTTCCAACAGTGCTCTGTCATGGTGAGGTTGTGAATTGCAATTTTTTTGGGAGTTTTAGTCTGCTTTCCCCATGCCTTTTGTTAACTGGTTATGGGTGGTGCTTCTTTCTGGTTTCTTTTTAGTTTTAGTCTCGTTTGTGTTTCTATGGTGCATTGTTGTATTTTTTTTGGATTTCTGTTTTTGTGTTTTCGGACTT
GATTCTTTGGTTTCTTTTATTGCTGTATATTTCATTATTGTTCTGTATTTTGTCTGGTTTTGCAATGTAATCCTCTGGTGGTTTTGCAATGCGAGAGAGTCAAACCTCTGTATCAATGAATTTCTTCAGTAGTTGCGGTTCTGACGGGGCTGATTAATTATTTACAATCCGGCATGGAGTTTGAGCGATTCCTGAGGAGT
TTGATCGATTCCTGAGGAGACCAAGTAAAGAAACCGTTCCTGGACAATGTTCCTCATGGTAAAGCTACGGTTCAGTTGATGGCAATTCTTTTATTAGCAATCACGTTTCTGCATAGATTTGTTATGATTGAAGCTCACTTCAAACGAAGGACCAGAGCATCCAGTTGAGAAATCTAGGATTAGTTTTGATTGAAGCTCAG
AGACGTAGTTCCAGAGGATTTACATTTAATGCAGTTAAAAAAACTgtaagtaatctttcatactgattcattattttgacagagtggcgtatagatgaatacaaatgtagtaagtctggaacaatgttcagcacatacataaaaatgctagctagttatacgaatatcacaatgtttaccgcagcataaacataaaaatg
gccattcagcttttttatattttacattctaatttgctttgcagatttatgtgtatcatactagttctagtatctattacattttttagaaccctctttttaaacatataaatcaaatgattttagttttgaaattgatggccttgaaagtttagaacgtggaacttaatttgctttctagcttcttcatcaatttatat
cgaagtgccatgagatttgtacttttagagatatgtaaatttttgaaactgtagatatatgtaaattttcgaaactgtagatagtgtatgtgaagggagcatatagattagaatagcataacaaattgcagttcgttgttcctttgactagGTCTACTTGTAATTGTGGGAGACACATGGCTGCACTTAATTCCTCTTTT
AAAGGTTTCTAGGTGGTGTGCAAATTAAAGCCATATTTTCTTGAAGTGGGAAGAGATAATAATACTTGTAAATTGAAGATATTCCTGGTTTATATGCAGCCAGTGAGAGATAGGTAACAATTAGCCTTGGGAAATAAATATTGCAAGTTATGGTACATTGCTAAACTTTTTCTTATGTCTTTAGCCTTTTGATCTGGCTC
TTCTATTTCCACTGTGTGTGGTGTATATGTTTCTTTTGGTTTCTTTTAATCAGCGTCAGTGTTATTTATGGCTTTTTTATGTTAGTATGAGTTTCCAATCAGCGTGCAGGAGTTTTCAATCCTGCTTTAATTGGAGAGAGCGTGTGCATATGGGAACGAAGTTTGTGCTATTTCCAAGAAGACCAACCAAAAGACAAAAT
TGGGTATTGGATGTACCCACATTATTTGTTGGACAACAACCTATTACACTGTAGGAATGCCTAGTGAGAATAAACTTGAAACCTGATAATAAATGTCAAAAGAACTTAGTTCAGTTGTTGCATTATCTATTAGAATTATTCTAGGGTTTGGGTTTATTTTCAACCAATATTTTAG

Intron 2 GTAACATTCA ... AAACTTTCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	38.46	16	2	10
A2	56.25	7	0	9
A3	57.14	3	0	4
A4	46.15	7	0	6
A5	56.25	7	0	9
A6	34.62	17	0	9
A7	45	11	0	9
A8	38.46	16	0	10
A9	37.93	18	0	11
A10	29.03	22	0	9

>TRINITY_DN124400_c1_g2_i9 from sample A1 / Example spliced isoform

CTGTCATGGATATGGAGATACATGCACCTTTTTCTTTGAAGGAATTGCTAAGCAACTTGCAGCATCTGGATATGGTGTGTTTGCGATGGATTATCCAGGATTGGGCCTTTCAGAAGGCTTCCATTGTTATATCCCATCTTTTGATAGACTTGTTGATGATGTCATTGAACATTACTCTAAAATTAAAGGTCGGCCAGAGT
ACAAGGATCTTCCCTGTTTTCTTTTTGGACAGTCCTTGGGAGGAGCAGTGGCTCTGAAGATTCATTTAAAGCAGCCCAATGCATGGGATGGAGCTGTTCTTGTTGCTCCAATGTGTAAAGTAAATTTTCCAACTTAAAACTTCCAGAGTCAAGTTATTTGAGTACTATAAGAAAATC

>TRINITY_DN124400_c1_g2_i1 from sample A1 / Example unspliced isoform:

CTGTCATGGATATGGAGATACATGCACCTTTTTCTTTGAAGgtaacattcatattctcagaaataatgcagaaatttgattttgctttttaatgtgttagcgaggttggttattattgtaactatgtcaagccagggagtttatggtgttaacacttcagatattgcaaaactttcagGAATTGCTAAGCAACTTGCAGC
ATCTGGATATGGTGTGTTTGCGATGGATTATCCAGGATTGGGCCTTTCAGAAGGCTTCCATTGTTATATCCCATCTTTTGATAGACTTGTTGATGATGTCATTGAACATTACTCTAAAATTAAAGGTGTGTGGTCTTCGCTTTCAGATGTTCTTGCAAACTTACACTTTTTTCATCCTTTCTTCTCTGTTTCAAACAACT
TTTGTGGCAATATTAAAAGGGGCATGCTCCCTTTTTAGTCTTTAAACACATGAGATTTAGAGTCAAATTTTTATCTAAGAAACAAAACCAGATATACTTTAGATTAAGCAGCTTCATCTCGTCCTCCTAATCTGGGATTGATGTAGAAGCGTTTCATGGACTGTAGCCACTATTTTCAACGCAAGTTTGATATTACACCC
AATATTTTTTGACCTTGAAACCTGCATGTAGAACAACAAACATAAACCAATTAACCATGCCTTGTGATTAAAGAATATTTCGTGATTGTATCTTCTGATGTGTGGTATGTGTGGATTACAGTATATTTTCCACAGGCAAGGTTTTGCTGGCAATGAAATTCTTAGTTGGAGCAAACAAATACCAAGAGCTGATGTACAAT
CGATCTTTATAAATTGTCCTTTAGTTAAAGACTTTAAAATAGTTGTTCATCAGATGAGGTCCTAATGCACAACATAAACAAGTTTTTATTGTTAAAGTATATGTGAAACATTACTAAGCATGGCCATTTCCTGGTTGAAAACTTGCTACAGAGAAACTACTGGTAAATTTCACTAAACATCTTGCCCATCTTGAGCTGTA
TATTGGCCATCTAACATCTGCTAAAATTTTTAGCCCACAGTCCTGATTCCCTGGGTCCATCTTTCTCTAATTTGTTTTCCAATCACTAAAACCTTGTTCAATCCCAATCTCTAAAACCATAAAAACCTAACAAAGATTGCATCCTTTGTTTCTTTATTAATAATCTTCTATCTGATAAGTTATGGTCCATGGAGATGTAT
TTGTTTGCGTTTGAATTCAGAAAAAATCCAGATCTTCTCTAAATGTATATTATAAAACCTAACTTTTTGGCTTTCCAAATCCCCAATTCTTGAAAATATCAAATTTGCAACTCTTCTTTTCATTCATTTTCATTGCTTTTGTAGAGTAGTTTATAATTTTCTATATAAATGTACATGGAAAAATTGGTTTCTGTAAGGTA
AAGAAACAGTGCTCTGATTACTGATTTCTAACTAGTAGTAACTTCATCCCAGCATTTGGTTCAACTCCATTTGCCCTGTCGTCTGGCCCAACCTCATTCTACTTTCTCCACCTTCCGCTTTATCATCTGTCATCAGTTACATGACATGATCAACCTTTCATGCATATCATATCTCTCTTTCCCTTCCTGATTACTGATTT
CCAACTAGTAGTAACTTCATACTAGTTCTTCTGAAGATGCTGGAAAGACAGAATCTAATTATAATGGTATTGCTTTTAAAACTCCTACAAAAACTGGTTCATCAAGAAAGGCTGGGTCAACAGGTTCAACTGGTTCAACTGGGAAGACCGGGTTCAACCACTTATGCCGGGACTACTTCTTCAATTGATGTTTGTTAGAC
TCGTTCAGCTGCACCTGTTTTCCCAGCCTCCCTAGTAGAGTAGCTGCAGTCCCAGTAGTTAATGAACGAGTATTTCCTTCCATCTGGATATGGGTCTAGGTATAAATATGTAGTTGGATCATCTGTATCTGTCCCTGCGTATGGATATGCTATGGGCTATTTATTTCGATCTATAACTGGAACTAGTCCTCCTGCTGTCC
GTGGTTATGTATTTTAACTTGGTCAACTAATAGGGGTGTTCCTTTCACTCGGTAAACATCTTGCATAATTGACTGCTTAGTCCTTTTGAGTTATTACGTAAAGAAAGTGGACTTCTTTAGTAGATGAATCTGGTAGCAAAGATCAGAAGCACAACAAACACCATAGACAGAGGCAAAGACACAAGCATCTCAGCCTGAGG
AGCCTTTAGGGTTCCTAAGCACAGTCTTATCTGGAGAATAGTGCATCATATTGAAGGGAAGACTGAAGGCAACAAACCACTTCTATAACTTATGAGATTTACTGCTATACACCCCATTTGGATTTTCTGGGAATAATAAACATAAAATACCCTTTCTTTCATCATTATTGTATACAATATTATTTAACCTAAACATGTGA
G

Intron 3 GTGTGAACTC ... GTTGTATCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	50	32	40	24
A2	53.54	23	21	32
A3	54.97	34	51	32
A4	47.89	37	37	31
A5	52.17	22	34	14
A6	52.87	37	55	28
A7	50.24	52	65	40
A8	36.23	22	11	14
A9	48.7	59	66	46
A10	53.23	58	72	60

>TRINITY_DN106625_c1_g1_i19 from sample A5 / Example spliced isoform

CGGAAGAGTAAACAGGTGAATCGGTGATGCAAGAGTTTATGGAAGAAATGGATTTAAAAGAGTACACTTCAGATTACATATGGAGAAGATTTTGTCGCAGTGACAGATCAGAGAAGACCAATCTGCAATCCAACTACTGGTCCGCTGAAGGGATCGAGGAAGACTCATAATTTGTTGAGCTAAACTGTCAAATCCAAGTT
CAAATCATGGGAAATATCCATCAGGTTGCCAAAAACATAAGAGATCAGTCTGCACAGTCTGTCTGTATGGAGGCATTATTGTCATCAGGGAGAAGCCTTCAAGGATCTCTGGCAAGTTTGGGTGGCATTAAAGATAACCCATTACAGATAAAATGCACAAGGGCTAGGATCCCTATTGGCAGGGTCAATATAAGGCCTAT
GATTTCGGCAGTGCATAGGATCCATGGGCCCAAGCTCATAGAAGGTGTGAGCGAGGAGCTGAACAAAATTGCTCAGGAGAACATGGATTATGCACCTGCTAGGAGGCAAGTGCACGCAGCCTTCGAACAAGTTCAGCAGAATCTGGATCATTGCTTGTTCAAGATGGCGCAACTAGGAGTAAAGACAAAGGAGAGTTATG
AAACAAACTCGCGAGGGCTGGAGATATTCACGAAAAACTGGCTTCCAGAGGCTCTTCCTCTAAAGGGTATTGTTTGCTTCTGTCATGGATATGGAGATACTTGCACCTTTTTCTTTGAAGGAATTGCTAAGCAACTTGCAGCATCTGGATATGGTGTGTTTGCGATGGATTATCCAGGATTGGGCCTTTCAGAAGGCTTC
CATTGTTATATCCCATCTTTTGATAGACTTGTTGATGATGTCATTGAACATTACTCTAAAATTAAAGGATATTGAGAAAGCAATTGACGTCCTTGGAAAAAAGATTGAGCCGATGATTAAGACTGAATATAGGAAGGGCCACCCTGAAGTCATTGTCCTTGATCCCCCAGATGCCAAACAACATTTATACAACCC

>TRINITY_DN106625_c1_g1_i8 from sample A5 / Example unspliced isoform:

CGGAAGAGTAAACAGGTGAATCGGTGATGCAAGAGTTTATGGAAGAAATGGATTTAAAAGAGTACACTTCAGATTACATATGGAGAAGATTTTGTCGCAGTGACAGATCAGAGAAGACCAATCTGCAATCCAACTACTGGTCCGCTGAAGGGATCGAGGAAGACTCATAATTTGTTGAGCTAAACTGTCAAATCCAAGTT
CAAATCATGGGAAATgtgtgaactcttctccaatctttaggcgcgtgggctcttcattctcgcatttttcacatgcccatatttctgaatgccttaaaccctttaatttattcgattataatataaacctcccacacatcttatcttggattctgtgttgtaaaccaccatttctttcgtatacactttactctgtctca
attttcccatttgggttgtatcagATCCATCAGGTTGCCAAAAACATAAGAGATCAGTCTGCACAGTCTGTCTGTATGGAGGCATTATTGTCATCAGGGAGAAGCCTTCAAGGATCTCTGGCAAGTTTGGGTGGCATTAAAGATAACCCATTACAGATAAAATGCACAAGGGCTAGGATCCCTATTGGCAGGGTCAATAT
AAGGCCTATGATTTCGGCAGTGCATAGGATCCATGGGCCCAAGCTCATAGAAGGTGTGAGCGAGGAGCTGAACAAAATTGCTCAGGAGAACATGGATTATGCACCTGCTAGGAGGCAAGTGCACGCAGCCTTCGAACAAGTTCAGCAGAATCTGGATCATTGCTTGTTCAAGATGGCGCAACTAGGAGTAAAGACAAAGG
AGAGTTATGAAACAAACTCGCGAGGGCTGGAGATATTCACGAAAAACTGGCTTCCAGAGGCTCTTCCTCTAAAGGGTATTGTTTGCTTCTGTCATGGATATGGAGATACTTGCACCTTTTTCTTTGAAGGAATTGCTAAGCAACTTGCAGCATCTGGATATGGTGTGTTTGCGATGGATTATCCAGGATTGGGCCTTTCA
GAAGGCTTCCATTGTTATATCCCATCTTTTGATAGACTTGTTGATGATGTCATTGAACATTACTCTAAAATTAAAGGATATTGAGAAAGCAATTGACGTCCTTGGAAAAAAGATTGAGCCGATGATTAAGACTGTGAGTACCATCCTGTGCGTTTGGGTGTATTTACTTCTGGATGCAATAAAGTTATGTGCCAAACTGT
GATCGACTAGAAGCCTAGGATCTCTCTTGGACACATTAAGTTATAATGTTCCCATTCTGACACTAATTTTTTGGCTTTAGATCGCAAATTACCAGGCTCCAGGAAAATACATTCTGAAACCAGG

Intron 4 GTATGAAATA ... GCTTCCAGAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	65.85	7	14	13
A2	46.43	15	11	15
A3	50	9	14	4
A4	65.22	8	17	13
A5	64.71	3	3	8
A6	48.57	27	20	31
A7	58.71	32	47	44
A8	55	18	21	23
A9	49.35	39	42	34
A10	58.7	19	31	23

>TRINITY_DN44504_c1_g1_i20 from sample A8 / Example spliced isoform

ACCAGTTTCTGCATAGGATTTGTTATGATTGAAGCTCACTTCAAACGAAGCACCAGAGTATCCAGTTGAGAAATCTTTTCTGGACGCTGCAGAGGATTAGTTTTGATTGAAGCTCAGAGACGTAGTTCCAGAGGATTTACATATAATGCAGTTAAAAAAACTATGGCGCCTTCTGGAGTAAAGACTGAAGAGAGTCCAGT

ATGGTCAAAGCCATGGTTTGTTTCTGTCATGGATATGGAGATACATGCACCTTTTTCTTTGAAGGAATTGCTAAGCAACTTGCAGCATCTGGATATGGTGTGTTTGCGATGGATTATCCAGGATTGGGCCTTTCAGAAGGCTTCCATTGTTATATCCCATCTTTTGATAGACTTGTTGATGATGTCATTGAACATTACTC
TAAAATTAAAGGTCGGCCAGAGTACAAGGATCTTCCCTGTTTTCTTTTTGGACAGTCCTTGGGAGGAGCAGTGGCTCTGAAGATTCATTTAAAGCAGCCCAATGCATGGGATGGAGCTGTTCTTGTTGCTCCAATGTGTAAAATTGCAGATGACGTCACTCCACCTTGGCCCCTGAGGCAGATTTTAATAGCCATAGCCC
ACATCTTCCCAAAACAGAAATTGGTTCCTCAGAAAAACTTAGCAGATTTGGCATTTAGAGAGGTCAACAAGAGAAAGCTGACTGTTTATAATGTGATTGCGTACAAAGATTGGCCACGCCTCAGGACTGCACTAGAGCTGCTAAGAACTACATCTGAGATAGAAGAACGATTGCAAGAGGTTTCTTTGCCATTACTAATT
CTACACGGGGCTGCTGATATGTTGACCGATCCCTCTGTAAGCAAGGCTCTATATGAGAAGTCAAAAAGTGTTGACAAACAACTGAAAATTTATGAAGATGCCTATCATGCTATTCTAGAAGGCGAGCCAGATGAAAGAATTTTTGAAGTCCTTGAAAATATCATTTCCTGGCTCGATGCACACTGTAATTCCAAACAAGC
TAGACAATAGAATTGTCTTGCACCTTTATATGGTGAACATTTGAGCTCGATCAGTTAAAAGTTCTTTATTGACAGTGTTCAACAATTTGAATCCATAGATATTTTAGCCTGTTTGAATTGATGCTTTGAATTCAACCAAAATAAGCATAAGACAACAGGCAAGCAATGTGACTATCCGTTATCTACAAAAGAAATTAAAG
AATTC

>TRINITY_DN44504_c1_g1_i3 from sample A8 / Example unspliced isoform:

ACCAGTTTCTGCATAGGATTTGTTATGATTGAAGCTCACTTCAAACGAAGCACCAGAGTATCCAGTTGAGAAATCTTTTCTGGACGCTGCAGAGGATTAGTTTTGATTGAAGCTCAGAGACGTAGTTCCAGAGGATTTACATATAATGCAGTTAAAAAAACTATGGCGCCTTCTGGAGTAAAGACTGAAGAGAGgtatga
aataaattcgagagggttagaatttttttctaaaagttggcttccagagTCCAGTATGGTCAAAGCCATGGTTTGTTTCTGTCATGGATATGGAGATACATGCACCTTTTTCTTTGAAGGAATTGCTAAGCAACTTGCAGCATCTGGATATGGTGTGTTTGCGATGGATTATCCAGGATTGGGCCTTTCAGAAGGCTTCC
ATTGTTATATCCCATCTTTTGATAGACTTGTTGATGATGTCATTGAACATTACTCTAAAATTAAAGGATATTGAGAAAGCAATTGACGTCCTTGGAAAAAAGATTGAGCCGATGATTAAGACTGAATATAGGAAGGGCCACCCTGAAGTCATTGTCCTTGATCCCCCAGATGCCAAACAACATTTATACAATCCCCAGTC
A

Intron 5 GCGCGTGGGC ... GATCCATCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	46.15	35	37	23
A2	51.3	28	27	32
A3	49.65	36	43	28
A4	49.23	33	33	31
A5	52.58	23	37	14
A6	50.31	40	49	32
A7	48.29	53	58	41
A8	36.67	19	9	13
A9	45.76	64	57	51
A10	51.64	59	63	63

>TRINITY_DN106625_c1_g1_i3 from sample A5 / Example spliced isoform

CGGAAGAGTAAACAGGTGAATCGGTGATGCAAGAGTTTATGGAAGAAATGGATTTAAAAGAGTACACTTCAGATTACATATGGAGAAGATTTTGTCGCAGTGACAGATCAGAGAAGACCAATCTGCAATCCAACTACTGGTCCGCTGAAGGGATCGAGGAAGACTCATAATTTGTTGAGCTAAACTGTCAAATCCAAGTT
CAAATCATGGGAAATGTGTGAACTCTTCTCCAATCTTTAGGTTGCCAAAAACATAAGAGATCAGTCTGCACAGTCTGTCTGTATGGAGGCATTATTGTCATCAGGGAGAAGCCTTCAAGGATCTCTGGCAAGTTTGGGTGGCATTAAAGATAACCCATTACAGATAAAATGCACAAGGGCTAGGATCCCTATTGGCAGGG
TCAATATAAGGCCTATGATTTCGGCAGTGCATAGGATCCATGGGCCCAAGCTCATAGAAGGTGTGAGCGAGGAGCTGAACAAAATTGCTCAGGAGAACATGGATTATGCACCTGCTAGGAGGCAAGTGCACGCAGCCTTCGAACAAGTTCAGCAGAATCTGGATCATTGCTTGTTCAAGATGGCGCAACTAGGAGTAAAG
ACAAAGGAGAGTTATGAAACAAACTCGCGAGGGCTGGAGATATTCACGAAAAACTGGCTTCCAGAGGCTCTTCCTCTAAAGGGTATTGTTTGCTTCTGTCATGGATATGGAGATACTTGCACCTTTTTCTTTGAAGGAATTGCTAAGCAACTTGCAGCATCTGGATATGGTGTGTTTGCGATGGATTATCCAGGATTGGG
CCTTTCAGAAGGCTTCCATTGTTATATCCCATCTTTTGATAGACTTGTTGATGATGTCATTGAACATTACTCTAAAATTAAAGGTCGGCCAGAGTACAAGGATCTTCCCTGTTTTCTTTTTGGACAGTCCTTGGGAGGAGCAGTGGCTCTGAAGATTCATTTAAAGCAGCCCAATGCATGGGATGGAGCTGTTCTTGTTG
CTCCAATGTGTAAAATTGCAGATGACGTCACTCCACCTTGGCCCCTGAGGCAGATTTTAATAGCCATAGCCCACATCTTCCCAAAACAGAAATTGGTTCCTCAGAAAAACTTAGCAGATTTGGCATTTAGAGAGGTC

>TRINITY_DN106625_c1_g1_i8 from sample A5 / Example unspliced isoform:

CGGAAGAGTAAACAGGTGAATCGGTGATGCAAGAGTTTATGGAAGAAATGGATTTAAAAGAGTACACTTCAGATTACATATGGAGAAGATTTTGTCGCAGTGACAGATCAGAGAAGACCAATCTGCAATCCAACTACTGGTCCGCTGAAGGGATCGAGGAAGACTCATAATTTGTTGAGCTAAACTGTCAAATCCAAGTT
CAAATCATGGGAAATGTGTGAACTCTTCTCCAATCTTTAGgcgcgtgggctcttcattctcgcatttttcacatgcccatatttctgaatgccttaaaccctttaatttattcgattataatataaacctcccacacatcttatcttggattctgtgttgtaaaccaccatttctttcgtatacactttactctgtctca
attttcccatttgggttgtatcagatccatcagGTTGCCAAAAACATAAGAGATCAGTCTGCACAGTCTGTCTGTATGGAGGCATTATTGTCATCAGGGAGAAGCCTTCAAGGATCTCTGGCAAGTTTGGGTGGCATTAAAGATAACCCATTACAGATAAAATGCACAAGGGCTAGGATCCCTATTGGCAGGGTCAATAT
AAGGCCTATGATTTCGGCAGTGCATAGGATCCATGGGCCCAAGCTCATAGAAGGTGTGAGCGAGGAGCTGAACAAAATTGCTCAGGAGAACATGGATTATGCACCTGCTAGGAGGCAAGTGCACGCAGCCTTCGAACAAGTTCAGCAGAATCTGGATCATTGCTTGTTCAAGATGGCGCAACTAGGAGTAAAGACAAAGG
AGAGTTATGAAACAAACTCGCGAGGGCTGGAGATATTCACGAAAAACTGGCTTCCAGAGGCTCTTCCTCTAAAGGGTATTGTTTGCTTCTGTCATGGATATGGAGATACTTGCACCTTTTTCTTTGAAGGAATTGCTAAGCAACTTGCAGCATCTGGATATGGTGTGTTTGCGATGGATTATCCAGGATTGGGCCTTTCA
GAAGGCTTCCATTGTTATATCCCATCTTTTGATAGACTTGTTGATGATGTCATTGAACATTACTCTAAAATTAAAGGATATTGAGAAAGCAATTGACGTCCTTGGAAAAAAGATTGAGCCGATGATTAAGACTGTGAGTACCATCCTGTGCGTTTGGGTGTATTTACTTCTGGATGCAATAAAGTTATGTGCCAAACTGT
GATCGACTAGAAGCCTAGGATCTCTCTTGGACACATTAAGTTATAATGTTCCCATTCTGACACTAATTTTTTGGCTTTAGATCGCAAATTACCAGGCTCCAGGAAAATACATTCTGAAACCAGG