NA ----> NA
Intron 1 GTGAGTGCTG ... GCTTGCGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 41.18 | 15 | 3 | 18 |
| A2 | 52.38 | 10 | 4 | 18 |
| A3 | 60 | 6 | 3 | 15 |
| A4 | 44.12 | 19 | 5 | 25 |
| A5 | 62.5 | 3 | 3 | 7 |
| A6 | 58.62 | 30 | 19 | 66 |
| A7 | 48.52 | 61 | 35 | 80 |
| A8 | 49.51 | 52 | 30 | 72 |
| A9 | 45.14 | 48 | 21 | 58 |
| A10 | 53.64 | 51 | 35 | 83 |
>TRINITY_DN45024_c1_g5_i2 from sample A7 / Example spliced isoformCGGGGCCTGCAACAATGCTTTTAGTTTACCCCACGCAATAAATATCAATAAATTGGATGAATATAACGGACGCAATAAATATCAATAAATTAGAAGAATATAACGGACGCCTGGCCAGACATGTACACTTCAAATACACGTGACATTTTAACCGTCATTTCATTTTGATTTTTCTGAAGTTTTTCTCTTTTTGAGTGGCC
GAATTATGTATTCTGTTAAGCAGAGCAGTTATGCTGTCACAAGATTTTCCATTGCTTCCTGAAGAGGGTTTGTACTTTGCGATGGAATCCCAGTGGGGCTCACATTCGAATCTCGGCGCAAGGAAATCCAACTGTTCATGAGCTGCTATATTGCGAGTATTTGAGCTTCTCCCCATTCAATATTTGAACGAATCGGCCTT
CAATTTGAAGGAAAGATTTTCCAGGTTCTCTTCGGCGCAAAGTATGCCGTCCGTTTGGACGGCATTTTCTGTAAGCATCGCCATCCATTGCTTTTCCCTCTGCGCCTACCGCGGGTTTTGCCTTTGCCGGTTCTCATTCTAATAAAGAAAGTAGACTAGAAGCTTCGGCTTAAGGTTTGAATTTATTTATAAATTTTCGC
GCAATTTCGGCTCCACGGTCGTTCACATGATTGCGGGCGCATTTTGGCGGTCAGTTAAAGCTGGATTTTTTGATGGGCCGAGAAAAGGATGGATAGCTCCGAGAAATCTCTGAAAGAAACTGATAACTGAAGTCTAACTCCGGACGCGGGAAAGCAGATTCAAGATCACAAGTTTTGCTGCTTCAAGAACCAGAAATTGA
ACAAGCTCAGATGAGTTTCTTGAGTACCTTGGACTTCAGGAGTTGGGTACAGAAGGAGCCATGAATATCCACCTGCAGTCATTCTGTGAGTAAGCTCTATAGCTTTGGCAGTAGTTAGTCACAGAAAGCCATAACGAAATTCTTTATGTTATCACAGCTATAATTAGATAAATTCATCACAAAAAACCGTTACGAATTTG
TATCTGTTAGCATAGGTGTAATGAGTTTGAGCTAAATTCAGATGAGCAGTTACAGTTTTTGGAAAGCTAAATTACTTTTACCCTTTCTCTGCAATAAAAAAAGCATATTAATGCAGTCATGTTGAATGCAATTGTACAGCTAAGTTACAGTTACAAGATTCTTTAAAAGATTCGCTAGTTTCAATGAACATTTAGGAACC
TCCTCCCATGGGAAGCGAATCGGACAACTCCTTTTGAATCGAGTAACCTGTTTAAGTGAAATGTTTGTTTTATGTAAGCCTCAGCAGTGAAGATTTAAATAGAGAAATATAAAATCACTCGCAAATCATGCTCAA
>TRINITY_DN45024_c1_g5_i5 from sample A7 / Example unspliced isoform:CGGGGCCTGCAACAATGCTTTTAGTTTACCCCACGCAATAAATATCAATAAATTGGATGAATATAACGGACGCAATAAATATCAATAAATTAGAAGAATATAACGGACGCCTGGCCAGACATGTACACTTCAAATACACGTGACATTTTAACCGTCATTTCATTTTGATTTTTCTGAAGTTTTTCTCTTTTTGAGTGGCC
GAATTATGTATTCTGTTAAGCAGAGCAGTTATGCTGTCACAAGATTTTCCATTGCTTCCTGAAGAGGGTTTGTACTTTGCGATGGAATCCCAGTGGGGCTCACATTCGAATCTCGGCGCAAGGAAATCCAACTGTTCATGAGCTGCTATATTGCGAGTATTTGAGCTTCTCCCCATTCAATATTTGAACGAATCGGCCTT
CAATTTGAAGGAAAGATTTTCCAGGTTCTCTTCGGCGCAAAGTATGCCGTCCGTTTGGACGGCATTTTCTGTAAGCATCGCCATCCATTGCTTTTCCCTCTGCGCCTACCGCGGGTTTTGCCTTTGCCGGTTCTCATTCTAATAAAGAAAGTAGACTAGAAGCTTCGGCTTAAGGTTTGAATTTATTTATAAATTTTCGC
GCAATTTCGGCTCCACGGTCGTTCACATGATTGCGGGCGCATTTTGGCGGTCAGTTAAAGCTGgtgagtgctggaattgcgcgtttggcggtcaattaaagctggtggtgctggaattgctcagtatcgctttgcccgttgctctgtccatgtcctgtaggacccgcggttgctgagcttccaacaacccattccatatg
actgccttttaatattaaacattacctagcggaaaccgtgtttacctcccgactttttgtccattgtcataaacgcatgttatgctaacgatctttctctgtctataggcgttgcggtaaatctttgagcagttattttgcgcttcagtaacgtgtgataatactccttagcagatgttttcttgctcttcggcactaac
tgagcggagcttgcgcagGATTTTTTGATGGGCCGAGAAAAGGATGGATAGCTCCGAGAAATCTCTGAAAGAAACTGATAACTGAAGTCTAACTCCGGACGCGGGAAAGCAGATTCAAGATCACAAGTTTTGCTGCTTCAAGAACCAGAAATTGAACAAGCTCAGATGAGTTTCTTGAGTACCTTGGACTTCAGGAGTTG
GGTACAGAAGGAGCCATGAATATCCACCTGCAGTCATTCTGTTTTCAGGAGTCATTTAAGTGGAAGGATAGGTGTTGCCTGCCATATCTTCTTGCAAATAGATGTTGTTAATCTTTAAGTGTAAGCTCTTTGCTTAGAAAGACGGTGATGCCTCCTCATCAAGTGGAATCGATTATATACAAGTAGAACCAGTTCAGTGG
GCATGGATAGTAAATTCAAAAGAGAATTGTATCATATATTTTAATGAACAAACTTAGAACTTGTTATGTCAAAATAGAAGACTATGTTTAAAATCCGGTTTCACGATAATGGAGTTTGGGAAACTTATTCAGTTGTGAACTTGTTATGCCAAGATTGGGTACTATGTTTAAAGTCTGGTTTCACAATAATGGAGGTGTGA
AACTTATTCGGTTTCACAACCCTTGGGAGTTGGGGAACTGGTTTCAGTCCTTCGTTAAATTAGGGGAGTTATGGAACTTGTTA
Intron 2 GTAAATCTTT ... GCTTGCGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 49.02 | 13 | 7 | 18 |
| A2 | 56 | 11 | 10 | 18 |
| A3 | 68.63 | 8 | 20 | 15 |
| A4 | 44.62 | 18 | 4 | 25 |
| A5 | 60 | 3 | 2 | 7 |
| A6 | 58.24 | 38 | 40 | 66 |
| A7 | 54.72 | 48 | 36 | 80 |
| A8 | 52 | 48 | 32 | 72 |
| A9 | 48.1 | 41 | 18 | 58 |
| A10 | 55.21 | 43 | 23 | 83 |
>TRINITY_DN45024_c1_g5_i1 from sample A7 / Example spliced isoformCGGGGCCTGCAACAATGCTTTTAGTTTACCCCACGCAATAAATATCAATAAATTGGATGAATATAACGGACGCAATAAATATCAATAAATTAGAAGAATATAACGGACGCCTGGCCAGACATGTACACTTCAAATACACGTGACATTTTAACCGTCATTTCATTTTGATTTTTCTGAAGTTTTTCTCTTTTTGAGTGGCC
GAATTATGTATTCTGTTAAGCAGAGCAGTTATGCTGTCACAAGATTTTCCATTGCTTCCTGAAGAGGGTTTGTACTTTGCGATGGAATCCCAGTGGGGCTCACATTCGAATCTCGGCGCAAGGAAATCCAACTGTTCATGAGCTGCTATATTGCGAGTATTTGAGCTTCTCCCCATTCAATATTTGAACGAATCGGCCTT
CAATTTGAAGGAAAGATTTTCCAGGTTCTCTTCGGCGCAAAGTATGCCGTCCGTTTGGACGGCATTTTCTGTAAGCATCGCCATCCATTGCTTTTCCCTCTGCGCCTACCGCGGGTTTTGCCTTTGCCGGTTCTCATTCTAATAAAGAAAGTAGACTAGAAGCTTCGGCTTAAGGTTTGAATTTATTTATAAATTTTCGC
GCAATTTCGGCTCCACGGTCGTTCACATGATTGCGGGCGCATTTTGGCGGTCAGTTAAAGCTGGTGAGTGCTGGAATTGCGCGTTTGGCGGTCAATTAAAGCTGGTGGTGCTGGAATTGCTCAGTATCGCTTTGCCCGTTGCTCTGTCCATGTCCTGTAGGACCCGCGGTTGCTGAGCTTCCAACAACCCATTCCATATG
ACTGCCTTTTAATATTAAACATTACCTAGCGGAAACCGTGTTTACCTCCCGACTTTTTGTCCATTGTCATAAACGCATGTTATGCTAACGATCTTTCTCTGTCTATAGGCGTTGCGGATTTTTTGATGGGCCGAGAAAAGGATGGATAGCTCCGAGAAATCTCTGAAAGAAACTGATAACTGAAGTCTAACTCCGGACGC
GGGAAAGCAGATTCAAGATCACAAGTTTTGCTGCTTCAAGAACCAGAAATTGAACAAGCTCAGATGAGTTTCTTGAGTACCTTGGACTTCAGGAGTTGGGTACAGAAGGAGCCATGAATATCCACCTGCAGTCATTCTGTGAGTAAGCTCTATAGCTTTGGCAGTAGTTAGTCACAGAAAGCCATAACGAAATTCTTTAT
GTTATCACAGCTATAATTAGATAAATTCATCACAAAAAACCGTTACGAATTTGTATCTGTTAGCATAGGTGTAATGAGTTTGAGCTAAATTCAGATGAGCAGTTACAGTTTTTGGAAAGCTAAATTACTTTTACCCTTTCTCTGCAATAAAAAAAGCATATTAATGCAGTCATGTTGAATGCAATTGTACAGCTAAGTTA
CAGTTACAAGATTCTTTAAAAGATTCGCTAGTTTCAATGAACATTTAGGAACCTCCTCCCATGGGAAGCGAATCGGACAACTCCTTTTGAATCGAGTAACCTGTTTAAGTGAAATGTTTGTTTTATGTAAGCCTCAGCAGTGAAGATTTAAATAGAGAAATATAAAATCACTCGCAAATCATGCTCAA
>TRINITY_DN45024_c1_g5_i5 from sample A7 / Example unspliced isoform:CGGGGCCTGCAACAATGCTTTTAGTTTACCCCACGCAATAAATATCAATAAATTGGATGAATATAACGGACGCAATAAATATCAATAAATTAGAAGAATATAACGGACGCCTGGCCAGACATGTACACTTCAAATACACGTGACATTTTAACCGTCATTTCATTTTGATTTTTCTGAAGTTTTTCTCTTTTTGAGTGGCC
GAATTATGTATTCTGTTAAGCAGAGCAGTTATGCTGTCACAAGATTTTCCATTGCTTCCTGAAGAGGGTTTGTACTTTGCGATGGAATCCCAGTGGGGCTCACATTCGAATCTCGGCGCAAGGAAATCCAACTGTTCATGAGCTGCTATATTGCGAGTATTTGAGCTTCTCCCCATTCAATATTTGAACGAATCGGCCTT
CAATTTGAAGGAAAGATTTTCCAGGTTCTCTTCGGCGCAAAGTATGCCGTCCGTTTGGACGGCATTTTCTGTAAGCATCGCCATCCATTGCTTTTCCCTCTGCGCCTACCGCGGGTTTTGCCTTTGCCGGTTCTCATTCTAATAAAGAAAGTAGACTAGAAGCTTCGGCTTAAGGTTTGAATTTATTTATAAATTTTCGC
GCAATTTCGGCTCCACGGTCGTTCACATGATTGCGGGCGCATTTTGGCGGTCAGTTAAAGCTGGTGAGTGCTGGAATTGCGCGTTTGGCGGTCAATTAAAGCTGGTGGTGCTGGAATTGCTCAGTATCGCTTTGCCCGTTGCTCTGTCCATGTCCTGTAGGACCCGCGGTTGCTGAGCTTCCAACAACCCATTCCATATG
ACTGCCTTTTAATATTAAACATTACCTAGCGGAAACCGTGTTTACCTCCCGACTTTTTGTCCATTGTCATAAACGCATGTTATGCTAACGATCTTTCTCTGTCTATAGGCGTTGCGgtaaatctttgagcagttattttgcgcttcagtaacgtgtgataatactccttagcagatgttttcttgctcttcggcactaac
tgagcggagcttgcgcagGATTTTTTGATGGGCCGAGAAAAGGATGGATAGCTCCGAGAAATCTCTGAAAGAAACTGATAACTGAAGTCTAACTCCGGACGCGGGAAAGCAGATTCAAGATCACAAGTTTTGCTGCTTCAAGAACCAGAAATTGAACAAGCTCAGATGAGTTTCTTGAGTACCTTGGACTTCAGGAGTTG
GGTACAGAAGGAGCCATGAATATCCACCTGCAGTCATTCTGTTTTCAGGAGTCATTTAAGTGGAAGGATAGGTGTTGCCTGCCATATCTTCTTGCAAATAGATGTTGTTAATCTTTAAGTGTAAGCTCTTTGCTTAGAAAGACGGTGATGCCTCCTCATCAAGTGGAATCGATTATATACAAGTAGAACCAGTTCAGTGG
GCATGGATAGTAAATTCAAAAGAGAATTGTATCATATATTTTAATGAACAAACTTAGAACTTGTTATGTCAAAATAGAAGACTATGTTTAAAATCCGGTTTCACGATAATGGAGTTTGGGAAACTTATTCAGTTGTGAACTTGTTATGCCAAGATTGGGTACTATGTTTAAAGTCTGGTTTCACAATAATGGAGGTGTGA
AACTTATTCGGTTTCACAACCCTTGGGAGTTGGGGAACTGGTTTCAGTCCTTCGTTAAATTAGGGGAGTTATGGAACTTGTTA
Intron 3 GTAAGCATCG ... GCTTGCGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 34.04 | 31 | 14 | 18 |
| A2 | 50 | 13 | 8 | 18 |
| A3 | 43.14 | 29 | 29 | 15 |
| A4 | 42.55 | 27 | 15 | 25 |
| A5 | 42.86 | 6 | 2 | 7 |
| A6 | 45.54 | 58 | 31 | 66 |
| A7 | 47.1 | 82 | 66 | 80 |
| A8 | 37.24 | 91 | 36 | 72 |
| A9 | 40.68 | 70 | 38 | 58 |
| A10 | 46.44 | 64 | 28 | 83 |
>TRINITY_DN104288_c0_g6_i1 from sample A4 / Example spliced isoformCAAGATTTTCCATTGCTTCCTGAAGAGGGTTTGTACTTTGCGATGGAATCCCAGTGGGGCTCACATTCGAATCTCGGCGCAAGGAAATCCAACTGTTCATGAGCTGCTATATTGCGAGTATTTGAGCTTCTCCCCATTCAATATTTGAACGAATCGGCCTTCAATTTGAAGGAAAGATTTTCCAGGTTCTCTTCGGCGCA
AAGTATGCCGTCCGTTTGGACGGCATTTTCTGATTTTTTGATGGGCCGAGAAAAGGATGGATAGCTCCGAGAAATCTCTGAAAGAAACTGATAACTGAAGTCTAACTCCGGACGCGGGAAAGCAGATTCAAGATCACAAGTTTTGCTGCTTCAAGAACCAGAAATTGAACAAGCTCAGATGAGTTTCTTGAGTACCTTGG
ACTTCAGGAGTTGGGTACAGAAGGAGCCATGAATATCCACCTGCAGTCATTCTGTGAGTAAGCTCTATAGCTTTGGCAGTAGTTAGTCACAGAAAGCCATAACGAAATTCTTTATGTTATCACAGCTATAATTAGATAAATTCATCACAAAAAACCGTTACGAATTTGTATCTGTTAGCATAGGTGTAATGAGTTTGAGC
TAAATTCAGATGAGCAGTTACAGTTTTTGGAAAGCTAAATTACTTTTACCCTTTCTCTGCAATAAAAAAAGCATATTAATGCAGTCATGTTGAATGCAATTGTACAGCTAAGTTACAGTTACAAGATTCTTTAAAAGATTCGCTAGTTTCAATGAACATTTAGGAACCTCCTCCCATGGGAAGCG
>TRINITY_DN104288_c0_g6_i2 from sample A4 / Example unspliced isoform:CAAGATTTTCCATTGCTTCCTGAAGAGGGTTTGTACTTTGCGATGGAATCCCAGTGGGGCTCACATTCGAATCTCGGCGCAAGGAAATCCAACTGTTCATGAGCTGCTATATTGCGAGTATTTGAGCTTCTCCCCATTCAATATTTGAACGAATCGGCCTTCAATTTGAAGGAAAGATTTTCCAGGTTCTCTTCGGCGCA
AAGTATGCCGTCCGTTTGGACGGCATTTTCTgtaagcatcgccatccattgcttttccctctgcgcctaccgcgggttttgcctttgccggttctcattctaataaagaaagtagactagaagcttcggcttaaggtttgaatttatttataaattttcgcgcaatttcggctccacggtcgttcacatgattgcgggcg
cattttggcggtcagttaaagctggtgagtgctggaattgcgcgtttggcggtcaattaaagctggtggtgctggaattgctcagtatcgctttgcccgttgctctgtccatgtcctgtaggtcccgcggttgctgagcttccaacaacccattccatatgactgccttttaatattaaacattacctagcggaaaccgt
gtttacctcccgactttttgtccattgtcataaacgcatgttatgctaacgatctttctctgtctataggcgttgcggtaaatctttgagcagttattttgcgcttcagtaacgtgtgataatactccttagcagatgttttcttgctcttcggcactaactgagcggagcttgcgcagGATTTTTTGATGGGCCGAGAA
AAGGATGGATAGCTCCGAGAAATCTCTGAAAGAAACTGATAACTGAAGTCTAACTCCGGACGCGGGAAAGCAGATTCAAGATCACAAGTTTTGCTGCTTCAAGAACCAGAAATTGAACAAGCTCAGATGAGTTTCTTGAGTACCTTGGACTTCAGGAGTTGGGTACAGAAGGAGCCATGAATATCCACCTGCAGTCATTC
TGTGAGTAAGCTCTATAGCTTTGGCAGTAGTTAGTCACAGAAAGCCATAACGAAATTCTTTATGTTATCACAGCTATAATTAGATAAATTCATCACAAAAAACCGTTACGAATTTGTATCTGTTAGCATAGGTGTAATGAGTTTGAGCTAAATTCAGATGAGCAGTTACAGTTTTTGGAAAGCTAAATTACTTTTACCCT
TTCTCTGCAATAAAAAAAGCATATTAATGCAGTCATGTTGAATGCAATTGTACAGCTAAGTTACAGTTACAAGATTCTTTAAAAGATTCGCTAGTTTCAATGAACATTTAGGAACCTCCTCCCATGGGAAGCG