sp|Q9C5J8|OEP80_ARATH ----> Outer envelope protein 80, chloroplastic
Intron 1 GTCTTCGACG ... TTATCAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 73.93 | 32.6 | 91.9 | 36.6 |
| A2 | 66.13 | 56.6 | 110.1 | 31.4 |
| A3 | 62.95 | 54.4 | 91.3 | 26.1 |
| A4 | 66.72 | 23.8 | 46.9 | 18 |
| A5 | 66.84 | 32.6 | 65.7 | 11.3 |
| A6 | 55.13 | 427.7 | 515.4 | 214.7 |
| A7 | 55.71 | 380.3 | 472.2 | 215.1 |
| A8 | 59.18 | 408 | 578.6 | 237 |
| A9 | 57.12 | 413.4 | 541.2 | 241.1 |
| A10 | 57.21 | 312.6 | 413.1 | 120.1 |
>TRINITY_DN124298_c0_g1_i10 from sample A2 / Example spliced isoformAAACAATTAATCATAAGAATGTAGAACTGCATTCTTGATTGATTACCTTCATATGCCGGTATTCTTTTGCAGTTTGGACCTGTGGAGGGTGCCATTTTTGGGGACTATGGAACGGATTTTGGTTCAGGGCAGACTGTTCCAGGTGATCCTGCAGGTGCTCGTAATAAACCAGGAAATGGATATGGTTACGGTGCAGGCAT
TCGCCACTGGGGCCTTTCCGGCTGGAATATGCCCTAAATAACCAAGATGCAAACTGCATGTTGTAGCAATGGAGTCCACTGCTTCTCAAGTGGGGTAGATTGATCCAGGCCCAGCAAACACATGAGAGCAGACACATCAAGATGGTCCACAAGACACATCAGGGACGGACCTCAGCAAGTCAAACTAGCTTTCTAAACCA
AGATTAGAATGCCTAACGGCTAAATTTTGCAACTAATTTCTTTTGTAGCAATTAGAGTTGAGCTTTTGGGAATAGAAAAGGAGATACAAAGACTGCTCTATTGTTGGTTGAACTATTTGCTGTAACGATTTCCCCTGTTCATCTTTGATATATCTTTGTTTTGTTTTACAGTAACCAAATGATGTCCATTCTCTGTTTAA
TCCGCTTATATGTTTTTCTGTCTTTTAGCGAATTTGGTTGTTTCTTCATCCTGCCTTGGAGGACGGATCATATATTCAGTGGCAGAAAATTTGGGTGAAGAAATTATAACATTCCTCTAGATGCATACATTAAAATAACTGCGGACTGTGGTCTATTTGAAAAAGCATGAATAGTGTTGATATTTTTAGAAGGAACCTAA
CCTGGAAAACACTAAAAC
>TRINITY_DN124298_c0_g1_i3 from sample A2 / Example unspliced isoform:AAACAATTAATCATAAGAATGTAGAACTGCATTCTTGATTGATTACCTTCATATGCCGGTATTCTTTTGCAGTTTGGACCTGTGGAGGGTGCCATTTTTGGGGACTATGGAATGGATTTTGGTTCAGGGCAGACTGTTCCAGGTGATCCTGCAGGTGCTCGTAATAAACCAGGAAATGGATATGGTTACGGTGCAGGCAT
TCGTGTGCATTCGCCACTGGGGCCTTTCCGGCTGGAATATGCCCTAAATAACCAAGgtcttcgacgatttcactttggagttggttatcataactagtgttcatcagtatttcaaaaatgaactgtttcttattctttaaatgtaaatattccagttcctcaattactgtacctaaagtgtcaggcagtttggtttaatt
atcaacagATGCAAACTGCATGTTGTAGCAA
Intron 2 GTATGTGTGC ... AGTTGTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 4.16 | 93 | 0 | 4 |
| A2 | 7.38 | 76.6 | 1 | 6 |
| A3 | 2.32 | 84.3 | 0 | 2 |
| A4 | 4.99 | 76.8 | 0 | 4 |
| A5 | 9.27 | 39.3 | 4 | 4 |
| A6 | 0 | 34.3 | 0 | 0 |
| A7 | 0 | 94.1 | 0 | 0 |
| A8 | 0 | 37.4 | 0 | 0 |
| A9 | 0 | 71.6 | 0 | 0 |
| A10 | 1.61 | 61.5 | 0 | 1 |
>TRINITY_DN124298_c0_g1_i5 from sample A2 / Example spliced isoformGCGCGAGAAGTGAGGCCTTTTGATAAGTTAAGGAGAGGCACTGAACTGGTAGCAGCAGCCCGAGCCAGGAAGGAAGCTACGACTATGGCGGTTGAGGGTTCGCTCCCGGTTTCCTCCCAATCAGTTCGTTTCTCATGGTCTTCGGTTAAAATTCCCGATGGCTCGATCCAACGCCATCCTCCGCGCTTCAATCTGGCACA
ATTTCCTCTGCGCGCTTTCGCTTCCAATCTGGAGAAAGCCAGGGACTTTGCGAAGGGTTTCATAGGATCCGTCGTCCACGGGAATCGAAATGCTTTCAACAGAAGAATGCCGTTGCTATGTTCCACCTCCATTACTATTGCCAACAGGGAAAACAAGGTCCCCTCTCTGGAGATGGAAAGCTACCAAAATGCAGGCAAGG
ACTATGCTTCTACAACGGAGACTTTGAATGGTTTATCTAACGGAGATTCGCATGGGCCTACGGTTCGAGGCACGGAGGATACCGCAGGGCAGCAGCAGAAGCAAGCGTGCCCGTGCCGTCCTGGAAAGGAAGACCAGGAGAGGGTTTTGATCAGCGAGGTTTTGTTTCAGAACAAGGATGGAGACGATCTCGAGAATCCG
GAGCTGTTAAGTTCTGCCATGGGGGCTCTAAAGGCCTGTAAACCTAACTCTGCTTTGACAATTCAGGAAGTGCAGGAAGATGTACACCGTGTTATCGATTGCGGCTATTTTTATTCGTGCATGCCTGTAGCGGTAGATACAAGAGACGGCATTCGCCTAATCTTCAAGGTAGAACCATATCAAGAATTTAAAGGCTTGAT
TTGTGAGGGTGCAAATGTTCTTCCAACAAGGATTGTGGAAGATGCATTCAGAGATGAATATGGAAAGATTGTAAATTATCAGCGGCTGAATAAAGTGCTAAATTTGATTGATAATTGGTATGTCGAACGAGGTCTCTTTGCAAAGGTTGCAGATGTAGAAATGCTATCCGGTGGAATTATCAGGTTGCATGTCTCAGAGG
CAGAAGTTAATAACATCACTATTCGGTTTCTTGATAGGAAGACCGGTGAGCCAACTGTAGGAAAGACTCGCCCAGAAACTCTTCTTCGTCAACTTACAACAAAAAAGGGTCAGGTTTACAGCTTGCAACAAGGTAGAAGGGATGTAGAGACTGTTCTGACCATGGGTATTATGGAAGATGTTAGCATTGTTCCTCAACAT
GCTGGTGGTAAGTATCATCCATATTTTAGCAGAAACATTAATTGAAAGATACTCTTTGTTTTAATTTGTTCAGGTGCTCTGAAGTATATATGCACTCCCAAAGATATGATAAAGGCCTGTAATTAATCAATATAATTTAGCTAAATACTGATTGGAATCTAGTCATGTTAGTATTAAGATTGGGGAGCTAATTGTTATGA
ATAAAAAGGCAGGTGTGTAAGTTAGGGAATTCCAGGC
>TRINITY_DN124298_c0_g1_i20 from sample A2 / Example unspliced isoform:GATGCATTCAGAGATGAATATGgtatgtgtgccttgttgtaggcattcttatttttctttaaattaattttcacaatgtcctttgtattatagaaacctgggtgctaggattgattatagatctgtggttgtattctgttgttctgggataggaaaacattcttttcccaccctttctcctctttttctcaccgacagat
gaaaaacttgagaaaggaattcctcagattaagttgactttattggtttcaagttgtgcagGAAAGATTGTAAATTATCAGCGGCTGAATAAAGTGCTAAATTTGATTGATAATTGGTATGTCGAACGAGGTCTGTTTGCAAAGGTCAGTAATCTTATGTGGGTGACAAAGCTCCTTTATTTTGCATGAAATTTAACGGA
ATAATGTCAAATGTGTGCACCATTATACTTTGGAACACCAAAGTTTAATGTACATGGTAATGAAATATGCAGACCTAGTGTCATCCTGGTAATCTTGTGCATCC
Intron 3 GTCTTCGACG ... CATGTTGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 69.15 | 29.7 | 91 | 42 |
| A2 | 57.22 | 53 | 106.7 | 35 |
| A3 | 64.59 | 33.7 | 90.7 | 32 |
| A4 | 68.32 | 17 | 46.3 | 27 |
| A5 | 54.91 | 35 | 66.3 | 18.3 |
| A6 | 55.36 | 341 | 510.7 | 335 |
| A7 | 55.11 | 317.3 | 471 | 308 |
| A8 | 55.55 | 367.3 | 573.3 | 345 |
| A9 | 56.1 | 354.3 | 540 | 365.7 |
| A10 | 54.06 | 256.7 | 410.7 | 193.3 |
>TRINITY_DN45279_c0_g1_i3 from sample A6 / Example spliced isoformTGTAGAACTGCTTTCTTGATTGATTACCTTCATATGCCGGTATTCTTTTGCAGTTTGGACCTGTGGAGGGTGCCATTTTTGGGGACTATGGAACGAATTTTGGTTCAGGGCAGACTGTTCCAGGTGATCCTGTAGGTGCTCGTAATAAACCAGGAAATGGATATGGTTACGGTGCAGGCATTCGCCACTGGGGCCTTTCC
GGCTGGAATATGCCCTAAATAACCAAGCAATGGAGTCCACTGCTTCTCAAGTGGGGTAGATTGATCCAGGCCCAGCAAACACATGAGAGCAGACACATCAAGATGGTCCACAAGACACATCAAGGACGGACCTCAGCAAGTCAAACTAGCTTTCTAAACCAAGATTAGAATGCCTAACGGCTAAATTTTGCAACTAATTT
CTTTTGTAGCAATTAGAGTTGAGCTTTTGGGAATAGAAAAGGAGATACAAAGACTGCTCTGTTGTTGGTTGAACTATTTG
>TRINITY_DN45279_c0_g1_i1 from sample A6 / Example unspliced isoform:CGGCGTACCATTGCACTTTGTGAGGCAATTGCTAGTTTAAAAATTTCCCTCTTAGTGCTACACTTCTTCTTAGTACTACACTTCTTAGGACTACACTAGGCGCGAGAAGTGAGGCCTTTTGATAAGTTAAGGAGAGGCACTGAACTGGTAGCAGCAGCCCGAGCCAGGAAGGAAGCTACGACTATGGCGGTTGAGGGTTC
GCTCCCGGTTTCCTCCCAATCAGTTCGTTTCTCATGGTCTTCGGTTAAAATTCCCGATGGCTCGATCCAACGCCATCCTCCGCGCTTCAATCTGGCACAATTTCCTCTGCGCGCTTTCGCTTCCAATCTGGAGAAAGCCAGGGACTTTGCGAAGGGTTTCATAGGATCCGTCGTCCACGGGAATCGAAATGCTTTCAACA
GAAGAATGCCGTTGCTATGTTCCACCTCCATTACTATTGCCAACAGGGAAAACAAGGTCCCCTCTCTGGAGATGGAAAGCTACCAAAATGCAGGCAAGGACTATGCTTCTACAACGGAGACTTTGAATGGTTTATCTAACGGAGATTCGCATGGGCCTACGGTTCGAGGCACGGAGGATACCGCAGGGCAGCAGCAGAAG
CAAGCGTGCCCGTGCCGTCCTGGAAAGGAAGACCAGGAGAGGGTTTTGATCAGCGAGGTTTTGTTTCAGAACAAGGATGGAGACGATCTCGAGAATCCGGAGCTGTTAAGTTCTGCCATGGGGGCTCTAAAGGCCTGTAAACCTAACTCTGCTTTGACAATTCAGGAAGTGCAGGAAGATGTACACCGTGTTATCGATTG
CGGCTATTTTTATTCGTGCATGCCTGTAGCGGTAGATACAAGAGACGGCATTCGCCTAATCTTCAAGGTAGAACCATATCAAGAATTTAAAGGCTTGATTTGTGAGGGTGCAAATGTTCTTCCAACAAGGATTGTGGAAGATGCATTCAGAGATGAATATGGAAAGATTGTAAATTATCAGCGGCTGAATAAAGTGCTAA
ATTTGATTGATAATTGGTATGTCGAACGAGGTCTCTTTGCAAAGGTTGCAGATGTAGAAATGCTATCCGGTGGAATTATCAGGTTGCATGTCTCAGAGGCAGAAGTTAATAACATCACTATTCGGTTTCTTGATAGGAAGACCGGTGAGCCAACTGTAGGAAAGACTCGCCCAGAAACTCTTCTTCGTCAACTTACAACA
AAAAAGGGTCAGGTTTACAGCTTGCAACAAGGTAGAAGGGATGTAGAGACTGTTCTGACCATGGGTATTATGGAAGATGTTAGCATTGTTCCTCAACATGCTGGTGATACAGGAAAGGTAGATTTGACAATGACTGTCGTGGAACGTGTTACTGGGGGATTCTCTGCAGGTGGAGGAATTTCAGGGAGCGGGATGGCAGG
TGGTCTTCTCTCAGGGCTTATTGGAAGCTTTGCATATTCACATAGAAATGTATTTGGGCAAAATCAAAAGCTAAACATTTCACTGGAGCGAGGTCAACATGATTCATCGTTCAAAATAAACTACACTGATCCATGGATAGAGGGTGATGATAAACGGACATCTAGGTCAATCACTGTTCAGAATTCCCGCACCCCTGGAA
CGCTTGTTCATGGAATGAGTCCAGGTTCAAATAATAGTTCTGATTCAAGAACACTAGTTTCTTCAGATGGGGCTGTGACAATAGGCAGACAGATGGCAAGTGTGGATTATAGTCGTCCACTTAGACCAAAGTGGAGTGGAACTGGAGGTATAAGTTTCCAGCGTGCAGGGCCTCTTCAGCGTGATCAGAATGGACAAATA
AAAATAGCAGATATGTATGGAGCTCCACTCACTTTTAGTGGCAAGGCCTATGATGACATGCTGCTTGCAAAGCTGGAGACCATGTATGCAGATTCTGGTGAACACGGATCTTCAATGCTTGTCTTTAACATGGAACAAGGCCTACCCATCTTGCCAGAATGGCTATTTTTTAATAGAGTAAATGCCCGTGCAAGACACGA
AATGCGCATTGGGCTGGCTCATTTCATTGCAAGTGTCTCTGGTGGTAAAGTAATTGGAGATTTGGCTCCTCATGAGGCATTTGCAATTGGAGGAACTAACAGTGTTAGAGGATATGAAGAAGGTGCAGTTGGTTCTGGTAGATCATACGTTGTTTCCAGTGTTGAAATTTCAGTTCCCATGTTTGGACCTGTGGAGGGTG
CCATTTTTGGGGACTATGGAACGAATTTTGGTTCAGGGCAGACTGTTCCAGGTGATCCTGTAGGTGCTCGTAATAAACCAGGAAATGGATATGGTTACGGTGCAGGCATTCGTGTGCATTCGCCACTGGGGCCTTTCCGGCTGGAATATGCCCTAAATAACCAAGgtcttcgacgatttcactttggagttggttatcat
aactagtgttcatcagtatttcaaaaatgaactgtttcttattctttaaatgtaaatattccagttcctcaattactgtacctaaagtgtcaggcagtttggtttaattatcaacagatgcaaactgcatgttgtagCAATGGAGTCCACTGCTTCTCAAGTGGGGTAGATTGATCCAGGCCCAGCAAACACATGAGAGC
AGACACATCAAGATGGTCCACAAGACACATCAAGGACGGACCTCAGCAAGTCAAACTAGCTTTCTAAACCAAGATTAGAATGCCTAACGGCTAAATTTTGCAACTAATTTCTTTTGTAGCAATTAGAGTTGAGCTTTTGGGAATAGAAAAGGAGATACAAAGACTGCTCTGTTGTTGGTTGAACTATTTG
Intron 4 GTCTTCGACG ... CATGTTGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 30.63 | 29.5 | 14.5 | 13 |
| A2 | 28.76 | 52 | 21.5 | 21 |
| A3 | 39.75 | 33 | 24 | 20.5 |
| A4 | 47.72 | 17 | 16.5 | 15 |
| A5 | 22.41 | 33.5 | 10.5 | 8.5 |
| A6 | 33.15 | 339 | 160 | 182.5 |
| A7 | 31.13 | 314.5 | 132.5 | 157.5 |
| A8 | 30.97 | 366 | 148 | 190.5 |
| A9 | 31.54 | 352.5 | 149 | 182.5 |
| A10 | 31.76 | 254.5 | 116.5 | 125.5 |
>TRINITY_DN45279_c0_g1_i3 from sample A6 / Example spliced isoformTGTAGAACTGCTTTCTTGATTGATTACCTTCATATGCCGGTATTCTTTTGCAGTTTGGACCTGTGGAGGGTGCCATTTTTGGGGACTATGGAACGAATTTTGGTTCAGGGCAGACTGTTCCAGGTGATCCTGTAGGTGCTCGTAATAAACCAGGAAATGGATATGGTTACGGTGCAGGCATTCGCCACTGGGGCCTTTCC
GGCTGGAATATGCCCTAAATAACCAAGCAATGGAGTCCACTGCTTCTCAAGTGGGGTAGATTGATCCAGGCCCAGCAAACACATGAGAGCAGACACATCAAGATGGTCCACAAGACACATCAAGGACGGACCTCAGCAAGTCAAACTAGCTTTCTAAACCAAGATTAGAATGCCTAACGGCTAAATTTTGCAACTAATTT
CTTTTGTAGCAATTAGAGTTGAGCTTTTGGGAATAGAAAAGGAGATACAAAGACTGCTCTGTTGTTGGTTGAACTATTTG
>TRINITY_DN45279_c0_g1_i6 from sample A6 / Example unspliced isoform:GTAGGTGCTCGTAATAAACCAGGAAATGGATATGGTTACGGTGCAGGCATTCGTGTGCATTCGCCACTGGGGCCTTTCCGGCTGGAATATGCCCTAAATAACCAAGgtcttcgacgatttcactttggaatgcaaactgcatgttgtagCAATGGAGTCCACTGCTTCTCAAGTGGGGTAGATTGATCCAGGCCCAGCAA
ACACATGAGAGCAGACACATCAAGATGGTCCACAAGACACATCAAGGACGGACCTCAGCAAGTCAAACTAGCTTTCTAAACCAAGATTAGAATGCCTAACGGCTAAATTTTGCAACTAATTTCTTTTGTAGCAATTAGAGTTGAGCTTTTGGGAATAGAAAAGGAGATACAAAGACTGCTCTGTTGTTGGTTGAACTATT
TG
Intron 5 GTGTGTCACT ... AATACACCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 17.5 | 108.7 | 25.1 | 20 |
| A2 | 12.26 | 119.3 | 15.9 | 14.3 |
| A3 | 13.71 | 103.1 | 9.6 | 14.1 |
| A4 | 15.16 | 74.7 | 9.4 | 12.6 |
| A5 | 24.08 | 61.3 | 14.6 | 18.3 |
| A6 | 4.41 | 706.4 | 15.4 | 26 |
| A7 | 5.05 | 707.3 | 13.7 | 30.7 |
| A8 | 8.05 | 607.1 | 17.7 | 41.9 |
| A9 | 4.6 | 755.3 | 17.6 | 29.4 |
| A10 | 7.16 | 599.9 | 12.4 | 38.3 |
>TRINITY_DN124298_c0_g1_i11 from sample A2 / Example spliced isoformGCGCGAGAAGTGAGGCCTTTTGATAAGTTAAGGAGAGGCACTGAACTGGTAGCAGCAGCCCGAGCCAGGAAGGAAGCTACGACTATGGCGGTTGAGGGTTCGCTCCCGGTTTCCTCCCAATCAGTTCGTTTCTCATGGTCTTCGGTTAAAATTCCCGATGGCTCGATCCAACGCCATCCTCCGCGCTTCAATCTGGCACA
ATTTCCTCTGCGCGCTTTCGCTTCCAATCTGGAGAAAGCCAGGGACTTTGCGAAGGGTTTCATAGGATCCGTCGTCCACGGGAATCGAAATGCTTTCAACAGAAGAATGCCGTTGCTATGTTCCACCTCCATTACTATTGCCAACAGGGAAAACAAGGTCCCCTCTCTGGAGATGGAAAGCTACCAAAATGCAGGCAAGG
ACTATGCTTCTACAACGGAGACTTTGAATGGTTTATCTAACGGAGATTCGCATGGGCCTACGGTTCGAGGCACGGAGGATACCGCAGGGCAGCAGCAGAAGCAAGCGTGCCCGTGCCGTCCTGGAAAGGAAGACCAGGAGAGGGTTTTGATCAGCGAGGTTTTGTTTCAGAACAAGGATGGAGACGATCTCGAGAATCCG
GAGCTGTTAAGTTCTGCCATGGGGGCTCTAAAGGCCTGTAAACCTAACTCTGCTTTGACAATTCAGGAAGTGCAGGAAGATGTACACCGTGTTATCGATTGCGGCTATTTTTATTCGTGCATGCCTGTAGCGGTAGATACAAGAGACGGCATTCGCCTAATCTTCAAGGTAGAACCATATCAAGAATTTAAAGGCTTGAT
TTGTGAGGGTGCAAATGTTCTTCCAACAAGGATTGTGGAAGATGCATTCAGAGATGAATATGGAAAGATTGTAAATTATCAGCGGCTGAATAAAGTGCTAAATTTGATTGATAATTGGTATGTCGAACGAGGTCTCTTTGCAAAGGTTGCAGATGTAGAAATGCTATCCGGTGGAATTATCAGGTTGCATGTCTCAGAGG
CAGAAGTTAATAACATCACTATTCGGTTTCTTGATAGGAAGACCGGTGAGCCAACTGTAGGAAAGACTCGCCCAGAAACTCTTCTTCGTCAACTTACAACAAAAAAGGGTCAGGTTTACAGCTTGCAACAAGGTAGAAGGGATGTAGAGACTGTTCTGACCATGGGTATTATGGAAGATGTTAGCATTGTTCCTCAACAT
GCTGGTGATACAGGAAAGGTAGATTTGACAATGACTGTCGTGGAACGTGTTACTGGGGGATTCTCTGCAGGTGGAGGAATTTCAGGGAGCGGGATGGCAGGTGGTCTTCTCTCAGGGCTTATTGGAAGCTTTGCATATTCACATAGAAATGTATTTGGGCAAAATCAAAAGCTAAACATTTCACTGGAGCGAGGTCAACA
TGATTCATCGTTCAAAATAAACTACACTGATCCATGGATAGAGGGTGATGATAAACGGACATCTAGGTCAATCACTGTTCAGAATTCCCGCACCCCTGGAACGCTTGTTCATGGAATGAGTCCAGGTTCAAATAATAGTTCTGATTCAAGAACACTAGTTTCTTCAGATGGGGCTGTGACAATAGGCAGACAGATGGCAA
GTGTGGATTATAGTCGTCCACTTAGACCAAAGTGGAGTGGAACTGGAGGTATAAGTTTCCAGCGTGCAGGGCCTCTTCAGCGTGATCAGAATGGACAAATAAAAATAGCAGATATGTATGGAGCTCCACTCACTTTTAGTGGCAAGGCCTATGATGACATGCTGCTTGCAAAGCTGGAGACCATGTATGCAGATTCTGGT
GAACACGGATCTTCAATGCTTGTCTTTAACATGGAACAAGGCCTACCCATCTTGCCAGAATGGCTATTTTTTAATAGAGTAAATGCCCGTGCAAGACACGAAATGCGCATTGGGCTGGCTCATTTCATTGCAAGTGTCTCTGGTGGTAAAGTAATTGGAGATTTGGCTCCTCATGAGGCATTTGCAATTGGAGGAACTAA
CAGTGTTAGAGGATATGAAGAAGGTGCAGTTGGTTCTGGTAGATCATACGTTGTTTCCAGTGTTGAAATTTCAGTTGCCATGTTTGGACCTGTGGAGGGTGCCATTTTTGGGGACTATGGAACGGATTTTGGTTCAGGGCAGACTGTTCCAGGTGATCCTGCAGGTGCTCGTAATAAACCAGGAAATGGATATGGTTACG
GTGCAGGCATTCGTGTGCATTCGCCACTGGGGCCTTTCCGGCTGGAATATGCCCTAAATAACCAAGGTCTTCGACGATTTCACTTTGGAGTTGGTTATCATAACTAGTGTTCATCAGTATTTCAAAAATGAACTGTTTCTTATTCTTTAAATGTAAATATTCCAGTTCCTCAATTACTGTACCTAAAGTGTCAGGCAGTT
TGGTTTAATTATCAACAGATGCAAACTGCATGTTGTAGCAAAAGATGACATGTTTTGTAGTTTGTCATAATGCTCTTTGAAAGAAGACACCTATGGCTGAGAAAGTCTTAGAGGAAATCAATCTTAAAAAAATGCTTGGATGTCACCTTTTTTTGGCAGAATTATTCAATACGGAGTGCTCAAGTCATTGATTTATATGT
TATCATCGCACTTTTTTATCAATTTAATAAAGGTTTTTAATTTTGAGACCCAACAAAAAAA
>TRINITY_DN124298_c0_g1_i14 from sample A2 / Example unspliced isoform:GCGCGAGAAGTGAGGCCTTTTGATAAGTTAAGGAGAGGCACTGAACTGGTAGCAGCAGCCCGAGCCAGGAAGGAAGCTACGACTATGGCGGTTGAGGGTTCGCTCCCGGTTTCCTCCCAATCAGTTCGTTTCTCATGGTCTTCGGTTAAAATTCCCGATGGCTCGATCCAACGCCATCCTCCGCGCTTCAATCTGGCACA
ATTTCCTCTGCGCGCTTTCGCTTCCAATCTGGAGAAAGCCAGGGACTTTGCGAAGGGTTTCATAGGATCCGTCGTCCACGGGAATCGAAATGCTTTCAACAGAAGAATGCCGTTGCTATGTTCCACCTCCATTACTATTGCCAACAGGGAAAACAAGGTCCCCTCTCTGGAGATGGAAAGCTACCAAAATGCAGGCAAGG
ACTATGCTTCTACAACGGAGACTTTGAATGGTTTATCTAACGGAGATTCGCATGGGCCTACGGTTCGAGGCACGGAGGATACCGCAGGGCAGCAGCAGAAGCAAGCGTGCCCGTGCCGTCCTGGAAAGGAAGACCAGGAGAGGGTTTTGATCAGCGAGGTTTTGTTTCAGAACAAGGATGGAGACGATCTCGAGAATCCG
GAGCTGTTAAGTTCTGCCATGGGGGCTCTAAAGGCCTGTAAACCTAACTCTGCTTTGACAATTCAGGAAGTGCAGGAAGATGTACACCGTGTTATCGATTGCGGCTATTTTTATTCGTGCATGCCTGTAGCGGTAGATACAAGAGACGGCATTCGCCTAATCTTCAAGGTAGAACCATATCAAGAATTTAAAGGCTTGAT
TTGTGAGGGTGCAAATGTTCTTCCAACAAGGATTGTGGAAGATGCATTCAGAGATGAATATGGAAAGATTGTAAATTATCAGCGGCTGAATAAAGTGCTAAATTTGATTGATAATTGGTATGTCGAACGAGGTCTCTTTGCAAAGGTTGCAGATGTAGAAATGCTATCCGGTGGAATTATCAGGTTGCATGTCTCAGAGG
CAGAAGTTAATAACATCACTATTCGGTTTCTTGATAGGAAGACCGGTGAGCCAACTGTAGGAAAGACTCGCCCAGAAACTCTTCTTCGTCAACTTACAACAAAAAAGGGTCAGGTTTACAGCTTGCAACAAGGTAGAAGGGATGTAGAGACTGTTCTGACCATGGGTATTATGGAAGATGTTAGCATTGTTCCTCAACAT
GCTGGTGATACAGGAAAGGTAGATTTGACAATGACTGTCGTGGAACGTGTTACTGGGGGATTCTCTGCAGGTGGAGGAATTTCAGGGAGCGGGATGGCAGGTGGTCTTCTCTCAGGGCTTATTGGAAGCTTTGCATATTCACATAGAAATGTATTTGGGCAAAATCAAAAGCTAAACATTTCACTGGAGCGAGGTCAACA
TGATTCATCGTTCAAAATAAACTACACTGATCCATGGATAGAGGGTGATGATAAACGGACATCTAGGTCAATCACTGTTCAGAATTCCCGCACCCCTGGAACGCTTGTTCATGGAATGAGTCCAGGTTCAAATAATAGTTCTGATTCAAGAACACTAGTTTCTTCAGATGGGGCTGTGACAATAGGCAGACAGATGGCAA
GTGTGGATTATAGTCGTCCACTTAGACCAAAGTGGAGTGGAACTGGAGGTATAAGTTTCCAGCGTGCAGGGCCTCTTCAGCGTGATCAGAATGGACAAATAAAAATAGCAGATATGTATGGAGCTCCACTCACTTTTAGTGGCAAGGCCTATGATGACATGCTGCTTGCAAAGCTGGAGACCATGTATGCAGATTCTGGT
GAACACGGATCTTCAATGCTTGTCTTTAACATGGAACAAGGCCTACCCATCTTGCCAGAATGGCTATTTTTTAATAGAGTAAATGCCCGTGCAAGACACGAAATGCGCATTGGGCTGGCTCATTTCATTGCAAGTGTCTCTGGTGGTAAAGTAATTGGAGATTTGGCTCCTCATGAGGCATTTGCAATTGGAGGAACTAA
CAGTGTTAGAGGATATGAAGAAGGTGCAGTTGGTTCTGGTAGATCATACGTTGTTTCCAGTGTTGAAATTTCAGTTGCCATGTTTGGACCTGTGGAGGGTGCCATTTCTGGGGACTATGGAACGGATTTTGGTTCAGGGCAGACTGTTCCAGgtgtgtcactactagggtaatcattttgaatattttatgttagtgtag
ggactataactaaaacaaggaaatacaccagGTGATCCTGCAGGTGCTCGTAATAAACCAGGAAATGGATATGGTTACGGTGCAGGCATTCGTGTGCATTCGCCACTGGGGCCTTTCCGGCTGGAATATGCCCTAAATAACCAAG
Intron 6 GTAGAACCAT ... CCATTCACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 75.15 | 41 | 124 | 5 |
| A2 | 78.38 | 24 | 87 | 10 |
| A3 | 73.72 | 36 | 101 | 10 |
| A4 | 84.26 | 17 | 91 | 8 |
| A5 | 89.36 | 5 | 42 | 6 |
| A6 | 65.45 | 19 | 36 | 4 |
| A7 | 73.42 | 42 | 116 | 8 |
| A8 | 67.31 | 17 | 35 | 3 |
| A9 | 69.53 | 39 | 89 | 7 |
| A10 | 73.6 | 33 | 92 | 7 |
>TRINITY_DN48198_c1_g2_i4 from sample A10 / Example spliced isoformTACACTAGGCGCGAGAAGTGAGGCCTTTTGATAAGTTAAGGAGAGGCACTGAACTGGTAGCAGCAGCCCGAGCCAGGAAGGAAGCTACGACTATGGCGGTTGAGGGTTCGCTCCCGGTTTCCTCCCAATCAGTTCGTTTCTCATGGTCTTCGGTTAAAATTCCCGATGGCTCGATCCAACGCCATCCTCCGCGCTTCAAT
CTGGCACAATTTCCTCTGCGCGCTTTCGCTTCCAATCTGGAGAAAGCCAGGGACTTTGCGAAGGGTTTCATAGGATCCGTCGTCCACGGGAATCGAAATGCTTTCAACAGAAGAATGCCGTTGCTATGTTCCACCTCCATTACTATTGCCAACAGGGAAAACAAGGTCCCCTCTCTGGAGATGGAAAGCTACCAAAATGC
AGGCAAGGACTATGCTTCTACAACGGAGACTTTGAATGGTTTATCTAACGGAGATTCGCATGGGCCTACGGTTCGAGGCACGGAGGATACCGCAGGGCAGCAGCAGAAGCAAGCGTGCCCGTGCCGTCCTGGAAAGGAAGACCAGGAGAGGGTTTTGATCAGCGAGGTTTTGTTTCAGAACAAGGATGGAGACGATCTCG
AGAATCCGGAGCTGTTAAGTTCTGCCATGGGGGCTCTAAAGGCCTGTAAACCTAACTCTGCTTTGACAATTCAGGAAGTGCAGGACGATGTTCACCGTGTTATCGATTGCGGCTATTTTTATTCGTGCATGCCTGTAGCGGTAGATACAAGAGACGGCATTCGCCTAATCTTCAAGTGTCTCTGGTGGGAAAGTAATTGG
AGATTTGGTTCCTCACGAGGCATTTGCAATTGGAGGAACTAACAGTGTTAGAGGATATGAAGAAGGTGCAGTTGGTTCTGGTAGATCATACGTTGTTTCCAGTGTTGAAATTTCAGTTCCCATGTTTGGACCTGTGGAGGGTGCCATTTTTGGGGACTATGGAACGGATTTTGGTTCAGGGCAGACTGTTCCAGGTGATC
CTGCAGGTGCTCGTAATAAACCAGGAAACGGATATGGTTACGGTGCAGGCATTCGTGTGCATTCGCCACTGGGGCCTTTGCGGCTGGAATATGCCCTAAATAACCAAGGTCTTCGACGATTTCACTTTGGAGTTGGTTATCATAACTAGTGTTCATCAGTATTTCAAAAATGAACTGTTTCTTATTCTTTAAATGTAAAT
ATTCCAGTTCCTCAATTACTGTACCTAAAGTGTCAGGCAGTTTGGTTTAATTATCAACAGATGCAAACTGCATGTTGTAGCAA
>TRINITY_DN48198_c1_g2_i1 from sample A10 / Example unspliced isoform:TACACTAGGCGCGAGAAGTGAGGCCTTTTGATAAGTTAAGGAGAGGCACTGAACTGGTAGCAGCAGCCCGAGCCAGGAAGGAAGCTACGACTATGGCGGTTGAGGGTTCGCTCCCGGTTTCCTCCCAATCAGTTCGTTTCTCATGGTCTTCGGTTAAAATTCCCGATGGCTCGATCCAACGCCATCCTCCGCGCTTCAAT
CTGGCACAATTTCCTCTGCGCGCTTTCGCTTCCAATCTGGAGAAAGCCAGGGACTTTGCGAAGGGTTTCATAGGATCCGTCGTCCACGGGAATCGAAATGCTTTCAACAGAAGAATGCCGTTGCTATGTTCCACCTCCATTACTATTGCCAACAGGGAAAACAAGGTCCCCTCTCTGGAGATGGAAAGCTACCAAAATGC
AGGCAAGGACTATGCTTCTACAACGGAGACTTTGAATGGTTTATCTAACGGAGATTCGCATGGGCCTACGGTTCGAGGCACGGAGGATACCGCAGGGCAGCAGCAGAAGCAAGCGTGCCCGTGCCGTCCTGGAAAGGAAGACCAGGAGAGGGTTTTGATCAGCGAGGTTTTGTTTCAGAACAAGGATGGAGACGATCTCG
AGAATCCGGAGCTGTTAAGTTCTGCCATGGGGGCTCTAAAGGCCTGTAAACCTAACTCTGCTTTGACAATTCAGGAAGTGCAGGAAGATGTACACCGTGTTATCGATTGCGGCTATTTTTATTCGTGCATGCCTGTAGCGGTAGATACAAGAGACGGCATTCGCCTAATCTTCAAGgtagaaccatatcaagaatttaaa
ggcttgatttgtgagggtgcaaatgttcttccaacaaggattgtggaagatgcattcagagatgaatatggaaagattgtaaattatcagcggctgaataaagtgctaaatttgattgataattggtatgtcgaacgaggtctctttgcaaaggttgcagatgtagaaatgctatccggtggaattatcaggttgcatgt
ctcagaggcagaagttaataacatcactattcggtttcttgataggaagaccggtgagccaactgtaggaaagactcgcccagaaactcttcttcgtcaacttacaacaaaaaagggtcagagacggaggaagagaagtgtgagagagagagttttggcaaagaagacggagtagcagccattctgagaaggcagcgcat
atttgcaaaggagagagactgacgtgttggcagaggtgactgtacagcagcgggaggtatagtctgtacagttgtacagattacatacagtccttacggattccgtacaacaggccgcacggattccgtacaacaggccgcacggatctgtacagcaggccgtacaacaacagcagtacaactgcgttgggatacatgcc
cattcacagTGTCTCTGGTGGGAAAGTAATTGGAGATTTGGTTCCTCACGAGGCATTTGCAATTGGAGGAAC
Intron 7 GTAGAACCAT ... CTTTGCAAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 63.41 | 58 | 124 | 77 |
| A2 | 66.27 | 43 | 87 | 82 |
| A3 | 56.62 | 59 | 101 | 53 |
| A4 | 58.59 | 53 | 91 | 59 |
| A5 | 61.67 | 23 | 42 | 32 |
| A6 | 60.98 | 24 | 36 | 39 |
| A7 | 58.97 | 72 | 116 | 91 |
| A8 | 65.77 | 19 | 35 | 38 |
| A9 | 57.65 | 65 | 89 | 88 |
| A10 | 59.4 | 54 | 92 | 66 |
>TRINITY_DN46137_c0_g2_i8 from sample A8 / Example spliced isoformTTGAGGGTTCGCTCCCGGTTTCCTCCCAATCAGTTCGTTTCTCATGGTCTTCGGTTAAAATTCCCGATGGCTCGATCCAACGCCATCCTCCGCGCTTCAATCTGGCACAATTTCCTCTGCGCGCTTTCGCTTCCAATCTGGAGAAAGCCAGGGACTTTGCGAAGGGTTTCATAGGATCCGTCGTCCACGGGAATCGAAAT
GCTTTCAACAGAAGAATGCCGTTGCTATGTTCCACCTCCATTACTATTGCCAACAGGGAAAACAAGGTCCCCTCTCTGGAGATGGAAAGCTACCAAAATGCAGGCAAGGACTATGCTTCTACAACGGAGACTTTGAATGGTTTATCTAACGGAGATTCGCATGGGCCTACGGTTCGAGGCACGGAGGATACCGCAGGGCA
GCAGCAGAAGCAAGCGTGCCCGTGCCGTCCTGGAAAGGAAGACCAGGAGAGGGTTTTGATCAGCGAGGTTTTGTTTCAGAACAAGGATGGAGACGATCTCGAGAATCCGGAGCTGTTAAGTTCTGCCATGGGGGCTCTAAAGGCCTGTAAACCTAACTCTGCTTTGACAATTCAGGAAGTGCAGGAAGATGTACACCGTG
TTATCGATTGCGGCTATTTTTATTCGTGCATGCCTGTAGCGGTAGATACAAGAGACGGCATTCGCCTAATCTTCAAGGTTGCAGATGTAGAAATGCTATCCGCTGGAATTATCAGGTTGCATGTCTCAGAGGCAGAAGTTAATAACATCACTATTCGGTTTCTTGATAGGAAGACCGGTGAGCCAACTGTAGGAAAGACT
CGCCCAGAAACTCTTCTTCGTCAACTTACAACAAAAAAGGGTCAGGTTTACAGCTTGCAACAAGGTAGAAGGGATGTAGAGACTGTTCTGACCATGGGTATTATGGAAGATGTTAGCATTGTTCCTCAACATGCTGGTGATACAGGAAAGGTAGATTTGACAATGACTGTCGTGGAACGTGTTACTGGGGGATTCTCTGC
AGGTGGAGGAATTTCAGGGAGCGGGATGGCAGGTGGTCTTCTCTCAGGGCTTATTGGAAGCTTTGCATATTCACATAGAAATGTATTTGGGCAAAATCAAAAGCTAAACATTTCACTGGAGCGAGGTCAACATGATTCATCGTTCAAAATAAACTACACTGATCCATGGATAGAGGGTGATGATAAACGGACATCTAGGT
CAATCACTGTTCAGAATTCCCGCACCCCTGGAACGCTTGTTCATGGAATGAGTCCAGGTTCAAATAATAGTTCTGATTCAAGAACACTAGTTTCTTCAGATGGGGCTGTGACAATAGGCAGACAGATGGCAAGTGTGGATTATAGTCGTCCACTTAGACCAAAGTGGAGTGGAACTGGAGGTATAAGTTTCCAGCGTGCA
GGGCCTCTTCAGCGTGATCAGAATGGACAAATAAAAATAGCAGATATGTATGGAGCTCCACTCACTTTTAGTGGCAAGGCCTATGATGACATGCTGCTTGCAAAGCTGGAGACCATGTATGCAGATTCTGGTGAACACGGATCTTCAATGCTTGTCTTTAACATGGAACAAGGCCTACCCATCTTGCCAGAATGGCTATT
TTTTAATAGAGTAAATGCCCGTGCAAGACACGAAATGCGCATTGGGCTGGCTCATTTCATTGCAAGTGTCTCTGGTGGTAAAGTAATTGGAGATTTGGCTCCTCATGAGGCATTTGCAATTGGAGGAACTAACAGTGTTAGAGGATATGAAGAAGGTGCAGTTGGTTCTGGTAGATCATACGTTGTTTCCAGTGTTGAAA
TTTCAGTTCCCATGTTTGGACCTGTGGAGGGTGCCATTTTTGGGGACTATGGAACGGATTTTGGTTCAGGGCAGACTGTTCCAGGTGATCCTGCAGGTGCTCGTAATAAACCAGGAAACGGATATGGTTACGGTGCAGGCATTCGTGTGCATTCGCCACTGGGGCCTTTGCGGCTGGAATATGCCCTAAATAACCAAGGT
CTTCGACGATTTCACTTTGGAGTTGGTTATCATAACTAGTGTTCATCAGTATTTCAAAAATGAACTGTTTCTTATTCTTTAAATGTAAATATTCCAGTTCCTCAATTACTGTACCTAAAGTGTCAGGCAGTTTGGTTTAATTATCAACAGATGCAAACTGCATGTTGTAGCAAAAGATGACATGTTTTGTAGTTTGTCAT
AATGCTCTTTGAAAGAAGACACCTATGGCTGAGAAAGTCTTAGAGGAAATCAATCTTAAAAAAATGCTTGGATGTCACCTTTTTTTGGCAGAATTATTCAATACGGAGTGCTCAAGTCATTGATTTATATGTTATCATCGCACTTTTTTATCAATTTAATAAAGGTTTTTAATTTTGAGACCCAACA
>TRINITY_DN46137_c0_g2_i9 from sample A8 / Example unspliced isoform:ATTGCACATTGCACCTTGTGAGGCAATTGCTAGTTTAAAAATTTCCCTCTTACTAGGCGCGAGAAGTGAGGCCTTTTGATAAGTTAAGGAGAGGCACTGAACTGGTAGCAGCAGCCCGAGCCAGGAAGGAAGCTACGACTATGGCGGTTGAGGGTTCGCTCCCGGTTTCCTCCCAATCAGTTCGTTTCTCATGGTCTTCG
GTTAAAATTCCCGATGGCTCGATCCAACGCCATCCTCCGCGCTTCAATCTGGCACAATTTCCTCTGCGCGCTTTCGCTTCCAATCTGGAGAAAGCCAGGGACTTTGCGAAGGGTTTCATAGGATCCGTCGTCCACGGGAATCGAAATGCTTTCAACAGAAGAATGCCGTTGCTATGTTCCACCTCCATTACTATTGCCAA
CAGGGAAAACAAGGTCCCCTCTCTGGAGATGGAAAGCTACCAAAATGCAGGCAAGGACTATGCTTCTACAACGGAGACTTTGAATGGTTTATCTAACGGAGATTCGCATGGGCCTACGGTTCGAGGCACGGAGGATACCGCAGGGCAGCAGCAGAAGCAAGCGTGCCCGTGCCGTCCTGGAAAGGAAGACCAGGAGAGGG
TTTTGATCAGCGAGGTTTTGTTTCAGAACAAGGATGGAGACGATCTCGAGAATCCGGAGCTGTTAAGTTCTGCCATGGGGGCTCTAAAGGCCTGTAAACCTAACTCTGCTTTGACAATTCAGGAAGTGCAGGAAGATGTACACCGTGTTATCGATTGCGGCTATTTTTATTCGTGCATGCCTGTAGCGGTAGATACAAGA
GACGGCATTCGCCTAATCTTCAAGgtagaaccatatcaagaatttaaaggcttgatttgtgagggtgcaaatgttcttccaacaaggattgtggaagatgcattcagagatgaatatggaaagattgtaaattatcagcggctgaataaagtgctaaatttgattgataattggtatgtcgaacgaggtctctttgcaaa
gGTTGCAGATGTAGAAATGCTATCCGCTGGAATTATCAGGTTGCATGTCTCAGAGGCAGAAGTTAATAACATCACTATTCGGTTTCTTGATAGGAAGACCGGTGAGCCAACTGTAGGAAAGACTCGCCCAGAAACTCTTCTTCGTCAACTTACAACAAAAAAGGGTCAGGTTTACAGCTTGCAACAAGGTAGAAGGGATG
TAGAGACTGTTCTGACCATGGGTATTATGGAAGATGTTAGCATTGTTCCTCAACATGCTGGTGATACAGGAAAGGTAGATTTGACAATGACTGTCGTGGAACGTGTTACTGGGGGATTCTCTGCAGGTGGAGGAATTTCAGGGAGCGGGATGGCAGGTGGTCTTCTCTCAGGGCTTATTGGAAGCTTTGCATATTCACAT
AGAAATGTATTTGGGCAAAATCAAAAGCTAAACATTTCACTGGAGCGAGGTCAACATGATTCATCGTTCAAAATAAACTACACTGATCCATGGATAGAGGGTGATGATAAACGGACATCTAGGTCAATCACTGTTCAGAATTCCCGCACCCCTGGAACGCTTGTTCATGGAATGAGTCCAGGTTCAAATAATAGTTCTGA
TTCAAGAACACTAGTTTCTTCAGATGGGGCTGTGACAATAGGCAGACAGATGGCAAGTGTGGATTATAGTCGTCCACTTAGACCAAAGTGGAGTGGAACTGGAGGTATAAGTTTCCAGCGTGCAGGGCCTCTTCAGCGTGATCAGAATGGACAAATAAAAATAGCAGATATGTATGGAGCTCCACTCACTTTTAGTGGCA
AGGCCTATGATGACATGCTGCTTGCAAAGCTGGAGACCATGTATGCAGATTCTGGTGAACACGGATCTTCAATGCTTGTCTTTAACATGGAACAAGGCCTACCCATCTTGCCAGAATGGCTATTTTTTAATAGAGTAAATGCCCGTGCAAGACACGAAATGCGCATTGGGCTGGCTCATTTCATTGCAAGTGTCTCTGGT
GGTAAAGTAATTGGAGATTTGGCTCCTCATGAGGCATTTGCAATTGGAGGAACTAACAGTGTTAGAGGATATGAAGAAGGTGCAGTTGGTTCTGGTAGATCATACGTTGTTTCCAGTGTTGAAATTTCAGTTCCCATGTTTGGACCTGTGGAGGGTGCCATTTTTGGGGACTATGGAACGGATTTTGGTTCAGGGCAGAC
TGTTCCAGGTGATCCTGCAGGTGCTCGTAATAAACCAGGAAACGGATATGGTTACGGTGCAGGCATTCGTGTGCATTCGCCACTGGGGCCTTTGCGGCTGGAATATGCCCTAAATAACCAAGGTCTTCGACGATTTCACTTTGGAGTTGGTTATCATAACTAGTGTTCATCAGTATTTCAAAAATGAACTGTTTCTTATT
CTTTAAATGTAAATATTCCAGTTCCTCAATTACTGTACCTAAAGTGTCAGGCAGTTTGGTTTAATTATCAACAGATGCAAACTGCATGTTGTAGCAAAAGATGACATGTTTTGTAGTTTGTCATAATGCTCTTTGAAAGAAGACACCTATGGCTGAGAAAGTCTTAGAGGAAATCAATCTTAAAAAAATGCTTGGATGTC
ACCTTTTTTTGGCAGAATTATTCAATACGGAGTGCTCAAGTCATTGATTTATATGTTATCATCGCACTTTTTTATCAATTTAATAAAGGTTTTTAATTTTGAGACCCAACA
Intron 8 GTAAAATTAA ... CATTCGACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 47.92 | 25 | 23 | 12 |
| A2 | 45.9 | 33 | 28 | 13 |
| A3 | 45.45 | 36 | 30 | 11 |
| A4 | 47.06 | 27 | 24 | 10 |
| A5 | 45 | 11 | 9 | 5 |
| A6 | 50 | 13 | 13 | 0 |
| A7 | 45.21 | 40 | 33 | 1 |
| A8 | 46.94 | 26 | 23 | 2 |
| A9 | 45 | 44 | 36 | 0 |
| A10 | 50.98 | 25 | 26 | 0 |
>TRINITY_DN122948_c5_g1_i3 from sample A3 / Example spliced isoformACTACACTAGGCGCGAGAAGTGAGGCCTTTTGATAAGTTAAGGAGAGGCACTGAACTGGTAGCAGCAGCCCGAGCCAGGAAGGAAGCTACGACTATGGCGGAGGTTGAGGGTTCGCTCCCGGTTTCCTCCCAATCAGTTCGTTTCTCATGGCCTTCGGTTAAAATTCCCGATGGCTCGATCCAACGCCATCCTCCGCGCT
TCAATCTGGCACAATTTCCTCTGCGCGCTTTCGCTTCCAATCTGGAGAAAGCCAGGGACTTTGCGAAGGGTTTCATAGGATCCGTCGTCCACGGGAATCGAAATGCTTTCAACAGAAGAATGCCGTTGCTATGTTCCACCTCCATTACTATTGCCAACAGGGAAAACAAGGTCCCCTCTCTGGAGATGGAAAGCTACCAA
AATGCAGGCAAGGACTATGCTTCTACAACGGAGACTTTGAATGGTTTATCTAACGGAGATTCGCATGGGCCTACGGTTCGAGGCACGGAGGATACCGCAGGGCAGCAGCAGAAGCAAGCGTGCCCGTGCCGTCCTGGAAAGGAAGACCAGGAGAGGGTTTTGATCAGCGAGGTTTTGTTTCAGAACAAGGATGGAGACGA
TCTCGAGAATCCGGAGCTGTTAAGTTCTGCCATGGGGGCTCTAAAGGCCTGTAAACCTAACTCTGCTTTGACAATTCAGGAAGTGCAGGAAGATGTACACCGTGTTATCGATTGCGGCTATTTTTATTCGTGCATGCCTGTAGCGGTAGATACAAGAGACGGCATTCGCCTAATCTTCAAGGTAGAACCATATCAAGAAT
TTAAAGGCTTGATTTGTGAGGGTGCAAATGTTCTTCCAACAAGGATTGTGGAAGATGCATTCAGAGATGAATATGGAAAGATTGTAAATTATCAGCGGCTGAATAAAGTGCTAAATTTGATTGATAATTGGTATGTCGAACGAGGTCTCTTTGCAAAGGTTGCAGATGTAGAAATGCTATCCGGTGGAATTATCAGGTTG
CATGTCTCAGAGGCAGAAGTTAATAACATCACTATTCGGTTTCTTGATAGGAAGACCGGTGAGCCAACTGTAGGAAAGACTCGCCCAGAAACTCTTCTTCGTCAGCTTACAACAAAAAAGGGTCAGAGACGGAGGAAGAGAAGTGTGAGAGAGAGAGTTTTGGCAAAGAAGACGGAGGAACAGCCATTCGAAGAAGTCAA
CACAGTTTCGCAGAGGAGAGAGATAAAGATCAGGCAGAGGTGACCATACAGCAGGCAGGAAAGTACAGCTCGTGCAGTTGTACGGATTCTGTAAGAAGGCTGTACGGATATGTACAGGAGGCTGTACAGCTGCAGTAGAGTTGCTGCATTGGTATCTGTGCCCATTTCACAGGTGTTTCTCAGTATTTCTCTGTGGCACG
ATTTTGCCAATT
>TRINITY_DN122948_c5_g1_i4 from sample A3 / Example unspliced isoform:ACTACACTAGGCGCGAGAAGTGAGGCCTTTTGATAAGTTAAGGAGAGGCACTGAACTGGTAGCAGCAGCCCGAGCCAGGAAGGAAGCTACGACTATGGCGGTTGAGGGTTCGCTCCCGGTTTCCTCCCAATCAGTTCGTTTCTCATGGCCTTCGGTTAAAATTCCCGATGGCTCGATCCAACGCCATCCTCCGCGCTTCA
ATCTGGCACAATTTCCTCTGCGCGCTTTCGCTTCCAATCTGGAGAAAGCCAGGGACTTTGCGAAGGGTTTCATAGGATCCGTCGTCCACGGGAATCGAAATGCTTTCAACAGAAGAATGCCGTTGCTATGTTCCACCTCCATTACTATTGCCAACAGGGAAAACAAGGTCCCCTCTCTGGAGATGGAAAGCTACCAAAAT
GCAGGCAAGGACTATGCTTCTACAACGGAGACTTTGAATGGTTTATCTAACGGAGATTCGCATGGGCCTACGGTTCGAGGCACGGAGGATACCGCAGGGCAGCAGCAGAAGCAAGCGTGCCCGTGCCGTCCTGGAAAGGAAGACCAGGAGAGGGTTTTGATCAGCGAGGTTTTGTTTCAGAACAAGGATGGAGACGATCT
CGAGAATCCGGAGCTGTTAAGTTCTGCCATGGGGGCTCTAAAGGCCTGTAAACCTAACTCTGCTTTGACAATTCAGGAAGTGCAGGAAGATGTACACCGTGTTATCGATTGCGGCTATTTTTATTCGTGCATGCCTGTAGCGGTAGATACAAGAGACGGCATTCGCCTAATCTTCAAGGTAGAACCATATCAAGAATTTA
AAGGCTTGATTTGTGAGGGTGCAAATGTTCTTCCAACAAGGATTGTGGAAGATGCATTCAGAGATGAATATGGAAAGATTGTAAATTATCAGCGGCTGAATAAAGTGCTAAATTTGATTGATAATTGGTATGTCGAACGAGGTCTCTTTGCAAAGGTTGCAGATGTAGAAATGCTATCCGGTGGAATTATCAGGTTGCAT
GTCTCAGAGGCAGAAGTTAATAACATCACTATTCGGTTTCTTGATAGGAAGACCGGTGAGCCAACTGTAGGAAAGACTCGCCCAGAAACTCTTCTTCGTCAGCTTACAACAAAAAAGGGTCAGgtaaaattaatttcaatttgttattgtgtacctttgagaacttttgaatgaaggaattctcggaatgattcctgcat
tcgacagAGACGGAGGAAGAGAAGTGTGAGAGAGAGAGTTTTGGCAAAGAAGACGGAGGAACAGCCATTCGAAGAAGTCAACACAGTTTCGCAGAGGAGAGAGATAAAGATCAGGCAGAGGTGACCATACAGCAGGCAGGAAAGTACAGCTCGTGCAGTTGTACGGATTCTGTAAGAAGGCTGTACGGATATGTACAGGA
GGCTGTACAGCTGCAGTAGAGTTGCTGCATTGGTATCTGTGCCCATTTCACAGGTGTTTCTCAGTATTTCTCTGTGGCACGATTTTGCCAATT
Intron 9 GTATGTGTGC ... TGGTTTCAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 20.95 | 83 | 26 | 18 |
| A2 | 26.63 | 62 | 26 | 19 |
| A3 | 12.3 | 82 | 20 | 3 |
| A4 | 21.43 | 66 | 25 | 11 |
| A5 | 25.49 | 38 | 16 | 10 |
| A6 | 17.33 | 31 | 11 | 2 |
| A7 | 18.55 | 90 | 29 | 12 |
| A8 | 23.08 | 35 | 12 | 9 |
| A9 | 15.58 | 65 | 20 | 4 |
| A10 | 16.79 | 57 | 16 | 7 |
>TRINITY_DN110307_c3_g1_i17 from sample A5 / Example spliced isoformTGAGGCAATTGCTAGTTTAAAAATTTCCCTCTTAGTGCTACACTTCTTCTTAGTACTACACTTCTTAGGACTACACTAGGCGCGAGAAGTGAGGCCTTTTGATAAGTTAAGGAGAGGCACTGAACTGGTAGCAGCAGCCCGAGCCAGGAAGGAAGCTACGACTATGGCGGTTGAGGGTTCGCTCCCGGTTTCCTCCCAAT
CAGTTCGTTTCTCATGGTCTTCGGTTAAAATTCCCGATGGCTCGATCCAACGCCATCCTCCGCGCTTCAATCTGGCACAATTTCCTCTGCGCGCTTTCGCTTCCAATCTGGAGAAAGCCAGGGACTTTGCGAAGGGTTTCATAGGATCCGTCGTCCACGGGAATCGAAATGCTTTCAACAGAAGAATGCCGTTGCTATGT
TCCACCTCCATTACTATTGCCAACAGGGAAAACAAGGTCCCCTCTCTGGAGATGGAAAGCTACCAAAATGCAGGCAAGGACTATGCTTCTACAACGGAGACTTTGAATGGTTTATCTAACGGAGATTCGCATGGGCCTACGGTTCGAGGCACGGAGGATACCGCAGGGCAGCAGCAGAAGCAAGCGTGCCCGTGCCGTCC
TGGAAAGGAAGACCAGGAGAGGGTTTTGATCAGCGAGGTTTTGTTTCAGAACAAGGATGGAGACGATCTCGAGAATCCGGAGCTGTTAAGTTCTGCCATGGGGGCTCTAAAGGCCTGTAAACCTAACTCTGCTTTGACAATTCAGGAAGTGCAGGAAGATGTACACCGTGTTATCGATTGCGGCTATTTTTATTCGTGCA
TGCCTGTAGCGGTAGATACAAGAGACGGCATTCGCCTAATCTTCAAGGTAGAACCATATCAAGAATTTAAAGGCTTGATTTGTGAGGGTGCAAATGTTCTTCCAACAAGGATTGTGGAAGATGCATTCAGAGATGAATATGTTGTGCAGGAAAGATTGTAAATTATCAGCGGCTGAATAAAGTGCTAAATTTGATTGATA
ATTGGTATGTCGAACGAGGTCTCTTTGCAAAGGTTGCAGATGTAGAAATGCTATCCGGTGGAATTATCAGGTTGCATGTCTCAGAGGCAGAAGTTAATAACATCACTATTCGGTTTCTTGATAGGAAGACCGGTGAGCCAACTGTAGGAAAGACTCGCCCAGAAACTCTTCTTCGTCAACTTACAACAAAAAAGGGTCAG
GTAAAATTAATTTCAATTTGTTATTGTGTACCTTTGAGAGCTTCTTGAATGAAGGAATTTTCGGAATGATTCCTGCATTCGACAGAGACGGAGGAAGAGAAGTGTGAGAGAGAGAGTTTTGGCAAAGAAGACGGAGGAGCAGCCATTCTGAGAAGGCAGTGCAGATTTGCAAAGGAGAGAGACTGACGTGTTGGCAGAGG
TGACTGTACAGCAGCGGGAGGTATAGTCTGTACAGTTGTACAGATTACATACAGTCCGTACGGATTCCGTACAACAGGCCGCACGGATTCCGTACAACAGGCCGCACGGATCTGTACAGCAGGCCGTACAACAACAGCAGTACAACTGCGTTGGGATACATGCCCATTCACAGTGTCTCTGGTGGGAAAGTAATTGGAGA
TTTGGCTCCTCATGAGGCATTTGCAATTGGAGGAACTAACAGTGTTCGAGGATATGAAGAAGGTGCAGTTGGTTCTGGTAGATCATACGTTGTTTCCAGTGTTGAAATTTCAGTTGCCATGGTAACGACATACACTCTTTTTTCATGCAAACAATGATTTATATTCACGT
>TRINITY_DN110307_c3_g1_i2 from sample A5 / Example unspliced isoform:TGAGGCAATTGCTAGTTTAAAAATTTCCCTCTTAGTGCTACACTTCTTCTTAGTACTACACTTCTTAGGACTACACTAGGCGCGAGAAGTGAGGCCTTTTGATAAGTTAAGGAGAGGCACTGAACTGGTAGCAGCAGCCCGAGCCAGGAAGGAAGCTACGACTATGGCGGTTGAGGGTTCGCTCCCGGTTTCCTCCCAAT
CAGTTCGTTTCTCATGGTCTTCGGTTAAAATTCCCGATGGCTCGATCCAACGCCATCCTCCGCGCTTCAATCTGGCACAATTTCCTCTGCGCGCTTTCGCTTCCAATCTGGAGAAAGCCAGGGACTTTGCGAAGGGTTTCATAGGATCCGTCGTCCACGGGAATCGAAATGCTTTCAACAGAAGAATGCCGTTGCTATGT
TCCACCTCCATTACTATTGCCAACAGGGAAAACAAGGTCCCCTCTCTGGAGATGGAAAGCTACCAAAATGCAGGCAAGGACTATGCTTCTACAACGGAGACTTTGAATGGTTTATCTAACGGAGATTCGCATGGGCCTACGGTTCGAGGCACGGAGGATACCGCAGGGCAGCAGCAGAAGCAAGCGTGCCCGTGCCGTCC
TGGAAAGGAAGACCAGGAGAGGGTTTTGATCAGCGAGGTTTTGTTTCAGAACAAGGATGGAGACGATCTCGAGAATCCGGAGCTGTTAAGTTCTGCCATGGGGGCTCTAAAGGCCTGTAAACCTAACTCTGCTTTGACAATTCAGGAAGTGCAGGAAGATGTACACCGTGTTATCGATTGCGGCTATTTTTATTCGTGCA
TGCCTGTAGCGGTAGATACAAGAGACGGCATTCGCCTAATCTTCAAGGTAGAACCATATCAAGAATTTAAAGGCTTGATTTGTGAGGGTGCAAATGTTCTTCCAACAAGGATTGTGGAAGTTGCATTCAGAGATGAATATGgtatgtgtgccttgttgtaggcattcttatttttctttaaattaattttcacaatgtcc
tttgtattatagaaacctgggtgctaggattgattatagatctgtggttgtattctgttgttctgggataggaaaacattcttttcccaccctttctcctctttttctcaccgacagatgaaaaacttgagaaaggaattcctcagattaagttgactttattggtttcaagTTGTGCAGGAAAGATTGTAAATTATCAG
CGGCTGAATAAAGTGCTAAATTTGATTGATAATTGGTATGTCGAACGAGGTCTCTTTGCAAAGGTTGCAGATGTAGAAATGCTATCCGGTGGAATTATCAGGTTGCATGTCTCAGAGGCAGAAGTTAATAACATCACTATTCGGTTT
Intron 10 GTAGGTTATC ... TTATCAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 75.9 | 21.9 | 90.4 | 42.7 |
| A2 | 69.14 | 28 | 85 | 35.7 |
| A3 | 63.81 | 32.3 | 76.3 | 32.3 |
| A4 | 58.71 | 22.1 | 39.6 | 22.9 |
| A5 | 69.11 | 12.6 | 42 | 13.6 |
| A6 | 59.08 | 227.3 | 357.4 | 275.4 |
| A7 | 62.56 | 184 | 320.7 | 268.6 |
| A8 | 63.33 | 222.3 | 430.1 | 295.4 |
| A9 | 61.23 | 222.9 | 372.6 | 302.9 |
| A10 | 59.43 | 151.1 | 265 | 152.4 |
>TRINITY_DN108941_c0_g1_i2 from sample A4 / Example spliced isoformGTTCAGGGCAGACTGTTCCAGGTGATCCTGCAGGTGCTCGTAATAAACCAGGAAACGGATATGGTTACGGTGCAGGCATTCGTGTGCATTCGCCACTGGGGCCTTTGCGGCTGGAATATGCCCTAAATAACCAAGTTTGGACCTGTGGAGGGTGCCATTTTTGGGGACTATGGAACGGATTTTGGTTCAGGGCAGACTGT
TCCAGGTGATCCTGCAGGTGCTCGTAATAAACCAGGAAACGGATATGGTTACGGTGCAGGCATTCGTGTGCATTCGCCACTGGGGCCTTTCCGGCTGGAATATGCCCTAAATAACCAAGGTCTTCGACGATTTCACTTTGGAATGCAAACTGCATGTTGTAGCAATGGAGTCCACTGCTTCTCAAGTGGGGTAGATTGAT
CCAGGCCCAGCAAACACATGAGAGCAGACACATCAAGATGGTCCACAAGACACATCAGGGACGGACCTCAGCAAGTCAAACTAGCTTTCTAAACCAAGATTAGAATGCCTAACGGCTAAATTTTGCAACTAATTTCTTTTGTAGCAATTAGAGTTGAGCTTTTGGGAATAGAAAAGGAGATACAAAGACTGCTCTGTTGT
TGGTTGAACTATTTGCTGTAACGATTTCCCCTGTTCATCTTTGATATATCTTTGTTTTGTTTTACAGTAACCGAATGATGTCCATTCTCTGTTTAATCCGC
>TRINITY_DN108941_c0_g1_i12 from sample A4 / Example unspliced isoform:CTTTTGCATTCTTTATTACTTAATTGTTTATACTCGTATAAACAATTAATCATAAGAATGTAGAACTGCATTCTTGATTGATTACCTTCATATGCCGGTATTCTTTTGCAGTTTGGACCTGTGGAGGGTGCCATTTTTGGGGACTATGGAACGGATTTTGGTTCAGGGCAGACTGTTCCAGGTGATCCTGCAGGTGCTCG
TAATAAACCAGGAAACGGATATGGTTACGGTGCAGGCATTCGCCACTGGGGCCTTTCCGGCTGGAATATGCCCTAAATAACCAAGGTCTTCGACGATTTCACTTTGGAgttggttatcataactagtgttcatcagtatttcaaaaatgaactgtttcttattctttaaatgtaaatattccagttcctcaattactgta
cctaaagtgtcaggcagtttggtttaattatcaacagATGCAAACTGCATGTTGTAGCAATGGAGTCCACTGCTTCTCAAGTGGGGTAGATTGATCCAGGCCCAGCAAACACATGAGAGCAGACACATCAAGATGGTCCACAAGACACATCAGGGACGGACCTCAGCAAGTCAAACTAGCTTTCTAAACCAAGATTAGAA
TGCCTAACGGCTAAATTTTGCAACTAATTTCTTTTGTAGCAATTAGAGTTGAGCTTTTGGGAATAGAAAAGGAGATACAAAGACTGCTCTGTTGTTGGTTGAACTATTTGCTGTAACGATTTCCCCTGTTCATCTTTGATATATCTTTGTTTTGTTTTACAGTAACCGAATGATGTCCATTCTCTGTTTAATCCGC
Intron 11 GTATGTGTGC ... AGTTGTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 2.54 | 96 | 1 | 4 |
| A2 | 5.88 | 80 | 4 | 6 |
| A3 | 2.3 | 85 | 2 | 2 |
| A4 | 4.82 | 79 | 4 | 4 |
| A5 | 13.04 | 40 | 8 | 4 |
| A6 | 0 | 35 | 0 | 0 |
| A7 | 0 | 96 | 0 | 0 |
| A8 | 0 | 39 | 0 | 0 |
| A9 | 0.68 | 73 | 1 | 0 |
| A10 | 2.33 | 63 | 2 | 1 |
>TRINITY_DN108941_c0_g1_i15 from sample A4 / Example spliced isoformGGCGCGAGAAGTGAGGCCTTTTGATAAGTTAAGGAGAGGCACTGAACTGGTAGCAGCAGCCCGAGCCAGGAAGGAAGCTACGACTATGGCGGTTGAGGGTTCGCTCCCGGTTTCCTCCCAATCAGTTCGTTTCTCATGGTCTTCGGTTAAAATTCCCGATGGCTCGATCCAACGCCATCCTCCGCGCTTCAATCTGGCAC
AATTTCCTCTGCGCGCTTTCGCTTCCAATCTGGAGAAAGCCAGGGACTTTGCGAAGGGTTTCATAGGATCCGTCGTCCACGGGAATCGAAATGCTTTCAACAGAAGAATGCCGTTGCTATGTTCCACCTCCATTACTATTGCCAACAGGGAAAACAAGGTCCCCTCTCTGGAGATGGAAAGCTACCAAAATGCAGGCAAG
GACTATGCTTCTACAACGGAGACTTTGAATGGTTTATCTAACGGAGATTCGCATGGGCCTACGGTTCGAGGCACGGAGGATACCGCAGGGCAGCAGCAGAAGCAAGCGTGCCCGTGCCGTCCTGGAAAGGAAGACCAGGAGAGGGTTTTGATCAGCGAGGTTTTGTTTCAGAACAAGGATGGAGACGATCTCGAGAATCC
GGAGCTGTTAAGTTCTGCCATGGGGGCTCTAAAGGCCTGTAAACCTAACTCTGCTTTGACAATTCAGGAAGTGCAGGAAGATGTACACCGTGTTATCGATTGCGGCTATTTTTATTCGTGCATGCCTGTAGCGGTAGATACAAGAGACGGCATTCGCCTAATCTTCAAGGTAGAACCATATCAAGAATTTAAAGGCTTGA
TTTGTGAGGGTGCAAATGTTCTTCCAACAAGGATTGTGGAAGATGCATTCAGAGATGAATATGGAAAGATTGTAAATTATCAGCGGCTGAATAAAGTGCTAAATTTGATTGATAATTGGTATGTCGAACGAGGTCTCTTTGCAAAGGTTGCAGATGTAGAAATGCTATCCGGTGGAATTATCAGGTTGCATGTCTCAGAG
GCAGAAGTTAATAACATCACTATTCGGTTTCTTGATAGGAAGACCGGTGAGCCAACTGTAGGAAAGACTCGCCCAGAAACTCTTCTTCGTCAACTTACAACAAAAAAGGGTCAGGTTTACAGCTTGCAACAAGGTAGAAGGGATGTAGAGACTGTTCTGACCATGGGTATTATGGAAGATGTTAGCATTGTTCCTCAACA
TGCTGGTGATACAGGAAAGGTAGATTTGACAATGACTGTCGTGGAACGTGTTACTGGGGGATTCTCTGCAGGTGGAGGAATTTCAGGGAGCGGGATGGCAGGTGGTCTTCTCTCAGGGCTTATTGGAAGCGTGCAGGGCCTCTTCAGCGTGATCAGAATGGACAAATAAAAATAGCAGATATGTATGGAGCTCCACTCAC
TTTTAGTGGCAAGGCCTATGATGACATGCTGCTTGCAAAGCTGGAGACCATGTATGCAGATTCTGGTGAACACGGATCTTCAATGCTTGTCTTTAACATGGAACAAGGCCTACCCATCTTGCCAGAATGGCTATTTTTTAATAGAGTAAATGCCCGTGCAAGACACGAAATGCGCATTGGGCTGGCTCATTTCATTGCAA
GTGTCTCTGGTGGTAAAGTAATTGGAGATTTGGCTCCTCATGAGGCATTTGCAATTGGAGGAACTAACAGTGTTAGAGGATATGAAGAAGGTGCAGTTGGTTCTGGTAGATCATACGTTGTTTCCAGTGTTGAAATTTCAGTT
>TRINITY_DN108941_c0_g1_i1 from sample A4 / Example unspliced isoform:GGGTTTGACTATTTTTGGGGATATAAACTTTAAAGCACCACCCTCTAAAACTTTGGAAGCTTAGATAAAGGTTTAGATTTGTTAAGCATGATTGTAACTGAGTAATGCTTGTCAACTAGATCTGTTTTGGTTTTGTGATTTAGAAAGAGAATAATTGAGTTTCTGCCATTTCTGATTTAAGGTAGAACCATATCAAGAAT
TTAAAGGCTTGATTTGTGAGGGTGCAAATGTTCTTCCAACAAGGATTGTGGAAGATGCATTCAGAGATGAATATGgtatgtgtgccttgttgtaggcattcttatttttctttaaattaattttcacaatgtcctttgtattatagaaacctgggtgctaggattgattattcattatagatctgtggttgtattctgtt
gttctgggataggaaaacattcttttcccaccctttctcctctttttctcaccgacagatgaaaaacttgagaaaggaattcctcagattaagttgactttattggtttcaagttgtgcagGAAAGATTGTAAATTATCAGCGGCTGAATAAAGTGCTAAATTTGATTGATAATTGGTATGTCGAACGAGGTCTGTTTGC
AAAGGTCAGTAATCTTATGTGGGTGACAAAGCTCCTTTATTTTGCATGAAATTTAACGGAATAATGTCAAATGTGT
Intron 12 GTTGGTTATC ... CATGTTGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 81.48 | 15 | 90 | 42 |
| A2 | 73.91 | 21 | 84 | 35 |
| A3 | 75 | 18 | 76 | 32 |
| A4 | 71.74 | 13 | 39 | 27 |
| A5 | 75.31 | 10 | 42 | 19 |
| A6 | 80.65 | 84 | 355 | 345 |
| A7 | 80.33 | 77 | 319 | 310 |
| A8 | 81.76 | 86 | 424 | 347 |
| A9 | 80.83 | 88 | 373 | 369 |
| A10 | 74.19 | 80 | 264 | 196 |
>TRINITY_DN45279_c0_g1_i5 from sample A6 / Example spliced isoformTGTAGAACTGCTTTCTTGATTGATTACCTTCATATGCCGGTATTCTTTTGCAGTTTAGATCTGTGGAGGGTGCCATTTTTGGGGACTATGGAACGAATTTTGGTTCAGGGCAGACTGTTCCAGGTGATCCTGTAGGTGCTCGTAATAAACCAGGAAATGGATATGGTTACGGTGCAGGCATTCGTGTGCATTCGCCACTG
GGGCCTTTCCGGCTGGAATATGCCCTAAATAACCAAGGTCTTCGACGATTTCACTTTGGACAATGGAGTCCACTGCTTCTCAA
>TRINITY_DN45279_c0_g1_i1 from sample A6 / Example unspliced isoform:CGGCGTACCATTGCACTTTGTGAGGCAATTGCTAGTTTAAAAATTTCCCTCTTAGTGCTACACTTCTTCTTAGTACTACACTTCTTAGGACTACACTAGGCGCGAGAAGTGAGGCCTTTTGATAAGTTAAGGAGAGGCACTGAACTGGTAGCAGCAGCCCGAGCCAGGAAGGAAGCTACGACTATGGCGGTTGAGGGTTC
GCTCCCGGTTTCCTCCCAATCAGTTCGTTTCTCATGGTCTTCGGTTAAAATTCCCGATGGCTCGATCCAACGCCATCCTCCGCGCTTCAATCTGGCACAATTTCCTCTGCGCGCTTTCGCTTCCAATCTGGAGAAAGCCAGGGACTTTGCGAAGGGTTTCATAGGATCCGTCGTCCACGGGAATCGAAATGCTTTCAACA
GAAGAATGCCGTTGCTATGTTCCACCTCCATTACTATTGCCAACAGGGAAAACAAGGTCCCCTCTCTGGAGATGGAAAGCTACCAAAATGCAGGCAAGGACTATGCTTCTACAACGGAGACTTTGAATGGTTTATCTAACGGAGATTCGCATGGGCCTACGGTTCGAGGCACGGAGGATACCGCAGGGCAGCAGCAGAAG
CAAGCGTGCCCGTGCCGTCCTGGAAAGGAAGACCAGGAGAGGGTTTTGATCAGCGAGGTTTTGTTTCAGAACAAGGATGGAGACGATCTCGAGAATCCGGAGCTGTTAAGTTCTGCCATGGGGGCTCTAAAGGCCTGTAAACCTAACTCTGCTTTGACAATTCAGGAAGTGCAGGAAGATGTACACCGTGTTATCGATTG
CGGCTATTTTTATTCGTGCATGCCTGTAGCGGTAGATACAAGAGACGGCATTCGCCTAATCTTCAAGGTAGAACCATATCAAGAATTTAAAGGCTTGATTTGTGAGGGTGCAAATGTTCTTCCAACAAGGATTGTGGAAGATGCATTCAGAGATGAATATGGAAAGATTGTAAATTATCAGCGGCTGAATAAAGTGCTAA
ATTTGATTGATAATTGGTATGTCGAACGAGGTCTCTTTGCAAAGGTTGCAGATGTAGAAATGCTATCCGGTGGAATTATCAGGTTGCATGTCTCAGAGGCAGAAGTTAATAACATCACTATTCGGTTTCTTGATAGGAAGACCGGTGAGCCAACTGTAGGAAAGACTCGCCCAGAAACTCTTCTTCGTCAACTTACAACA
AAAAAGGGTCAGGTTTACAGCTTGCAACAAGGTAGAAGGGATGTAGAGACTGTTCTGACCATGGGTATTATGGAAGATGTTAGCATTGTTCCTCAACATGCTGGTGATACAGGAAAGGTAGATTTGACAATGACTGTCGTGGAACGTGTTACTGGGGGATTCTCTGCAGGTGGAGGAATTTCAGGGAGCGGGATGGCAGG
TGGTCTTCTCTCAGGGCTTATTGGAAGCTTTGCATATTCACATAGAAATGTATTTGGGCAAAATCAAAAGCTAAACATTTCACTGGAGCGAGGTCAACATGATTCATCGTTCAAAATAAACTACACTGATCCATGGATAGAGGGTGATGATAAACGGACATCTAGGTCAATCACTGTTCAGAATTCCCGCACCCCTGGAA
CGCTTGTTCATGGAATGAGTCCAGGTTCAAATAATAGTTCTGATTCAAGAACACTAGTTTCTTCAGATGGGGCTGTGACAATAGGCAGACAGATGGCAAGTGTGGATTATAGTCGTCCACTTAGACCAAAGTGGAGTGGAACTGGAGGTATAAGTTTCCAGCGTGCAGGGCCTCTTCAGCGTGATCAGAATGGACAAATA
AAAATAGCAGATATGTATGGAGCTCCACTCACTTTTAGTGGCAAGGCCTATGATGACATGCTGCTTGCAAAGCTGGAGACCATGTATGCAGATTCTGGTGAACACGGATCTTCAATGCTTGTCTTTAACATGGAACAAGGCCTACCCATCTTGCCAGAATGGCTATTTTTTAATAGAGTAAATGCCCGTGCAAGACACGA
AATGCGCATTGGGCTGGCTCATTTCATTGCAAGTGTCTCTGGTGGTAAAGTAATTGGAGATTTGGCTCCTCATGAGGCATTTGCAATTGGAGGAACTAACAGTGTTAGAGGATATGAAGAAGGTGCAGTTGGTTCTGGTAGATCATACGTTGTTTCCAGTGTTGAAATTTCAGTTCCCATGTTTGGACCTGTGGAGGGTG
CCATTTTTGGGGACTATGGAACGAATTTTGGTTCAGGGCAGACTGTTCCAGGTGATCCTGTAGGTGCTCGTAATAAACCAGGAAATGGATATGGTTACGGTGCAGGCATTCGTGTGCATTCGCCACTGGGGCCTTTCCGGCTGGAATATGCCCTAAATAACCAAGGTCTTCGACGATTTCACTTTGGAgttggttatcat
aactagtgttcatcagtatttcaaaaatgaactgtttcttattctttaaatgtaaatattccagttcctcaattactgtacctaaagtgtcaggcagtttggtttaattatcaacagatgcaaactgcatgttgtagCAATGGAGTCCACTGCTTCTCAAGTGGGGTAGATTGATCCAGGCCCAGCAAACACATGAGAGC
AGACACATCAAGATGGTCCACAAGACACATCAAGGACGGACCTCAGCAAGTCAAACTAGCTTTCTAAACCAAGATTAGAATGCCTAACGGCTAAATTTTGCAACTAATTTCTTTTGTAGCAATTAGAGTTGAGCTTTTGGGAATAGAAAAGGAGATACAAAGACTGCTCTGTTGTTGGTTGAACTATTTG
Intron 13 GTAAAATTAA ... CATTCGACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 48.87 | 28.3 | 27 | 10.3 |
| A2 | 44.74 | 39.8 | 32 | 15 |
| A3 | 45.97 | 36.5 | 31 | 9.5 |
| A4 | 46.83 | 27.3 | 24 | 6.5 |
| A5 | 44.64 | 11.3 | 9 | 8 |
| A6 | 50 | 13 | 13 | 0 |
| A7 | 45.65 | 40.5 | 34 | 2 |
| A8 | 46.23 | 26.8 | 23 | 3.8 |
| A9 | 45.58 | 47.8 | 40 | 2.3 |
| A10 | 51.67 | 25.3 | 27 | 0 |
>TRINITY_DN124298_c0_g1_i16 from sample A2 / Example spliced isoformGCGCGAGAAGTGAGGCCTTTTGATAAGTTAAGGAGAGGCACTGAACTGGTAGCAGCAGCCCGAGCCAGGAAGGAAGCTACGACTATGGCGGTTGAGGGTTCGCTCCCGGTTTCCTCCCAATCAGTTCGTTTCTCATGGTCTTCGGTTAAAATTCCCGATGGCTCGATCCAACGCCATCCTCCGCGCTTCAATCTGGCACA
ATTTCCTCTGCGCGCTTTCGCTTCCAATCTGGAGAAAGCCAGGGACTTTGCGAAGGGTTTCATAGGATCCGTCGTCCACGGGAATCGAAATGCTTTCAACAGAAGAATGCCGTTGCTATGTTCCACCTCCATTACTATTGCCAACAGGGAAAACAAGGTCCCCTCTCTGGAGATGGAAAGCTACCAAAATGCAGGCAAGG
ACTATGCTTCTACAACGGAGACTTTGAATGGTTTATCTAACGGAGATTCGCATGGGCCTACGGTTCGAGGCACGGAGGATACCGCAGGGCAGCAGCAGAAGCAAGCGTGCCCGTGCCGTCCTGGAAAGGAAGACCAGGAGAGGGTTTTGATCAGCGAGGTTTTGTTTCAGAACAAGGATGGAGACGATCTCGAGAATCCG
GAGCTGTTAAGTTCTGCCATGGGGGCTCTAAAGGCCTGTAAACCTAACTCTGCTTTGACAATTCAGGAAGTGCAGGAAGATGTACACCGTGTTATCGATTGCGGCTATTTTTATTCGTGCATGCCTGTAGCGGTAGATACAAGAGACGGCATTCGCCTAATCTTCAAGGTAGAACCATATCAAGAATTTAAAGGCTTGAT
TTGTGAGGGTGCAAATGTTCTTCCAACAAGGATTGTGGAAGATGCATTCAGAGATGAATATGGAAAGATTGTAAATTATCAGCGGCTGAATAAAGTGCTAAATTTGATTGATAATTGGTATGTCGAACGAGGTCTCTTTGCAAAGGTTGCAGATGTAGAAATGCTATCCGGTGGAATTATCAGGTTGCATGTCTCAGAGG
CAGAAGTTAATAACATCACTATTCGGTTTCTTGATAGGAAGACCGGTGAGCCAACTGTAGGAAAGACTCGCCCAGAAACTCTTCTTCGTCAACTTACAACAAAAAAGGGTCAGAGACGGAGGAAGAGAAGTGTGAGAGAGAGAGTTTTGGCAAAGAAGACGGAGGAGCAGCCATTCTGAGAAGGCAGTGCAGATTTGCAA
AGGAGAGAGACTGACG
>TRINITY_DN124298_c0_g1_i13 from sample A2 / Example unspliced isoform:GCGCGAGAAGTGAGGCCTTTTGATAAGTTAAGGAGAGGCACTGAACTGGTAGCAGCAGCCCGAGCCAGGAAGGAAGCTACGACTATGGCGGTTGAGGGTTCGCTCCCGGTTTCCTCCCAATCAGTTCGTTTCTCATGGTCTTCGGTTAAAATTCCCGATGGCTCGATCCAACGCCATCCTCCGCGCTTCAATCTGGCACA
ATTTCCTCTGCGCGCTTTCGCTTCCAATCTGGAGAAAGCCAGGGACTTTGCGAAGGGTTTCATAGGATCCGTCGTCCACGGGAATCGAAATGCTTTCAACAGAAGAATGCCGTTGCTATGTTCCACCTCCATTACTATTGCCAACAGGGAAAACAAGGTCCCCTCTCTGGAGATGGAAAGCTACCAAAATGCAGGCAAGG
ACTATGCTTCTACAACGGAGACTTTGAATGGTTTATCTAACGGAGATTCGCATGGGCCTACGGTTCGAGGCACGGAGGATACCGCAGGGCAGCAGCAGAAGCAAGCGTGCCCGTGCCGTCCTGGAAAGGAAGACCAGGAGAGGGTTTTGATCAGCGAGGTTTTGTTTCAGAACAAGGATGGAGACGATCTCGAGAATCCG
GAGCTGTTAAGTTCTGCCATGGGGGCTCTAAAGGCCTGTAAACCTAACTCTGCTTTGACAATTCAGGAAGTGCAGGAAGATGTACACCGTGTTATCGATTGCGGCTATTTTTATTCGTGCATGCCTGTAGCGGTAGATACAAGAGACGGCATTCGCCTAATCTTCAAGGTAGAACCATATCAAGAATTTAAAGGCTTGAT
TTGTGAGGGTGCAAATGTTCTTCCAACAAGGATTGTGGAAGATGCATTCAGAGATGAATATGGAAAGATTGTAAATTATCAGCGGCTGAATAAAGTGCTAAATTTGATTGATAATTGGTATGTCGAACGAGGTCTCTTTGCAAAGGTTGCAGATGTAGAAATGCTATCCGGTGGAATTATCAGGTTGCATGTCTCAGAGG
CAGAAGTTAATAACATCACTATTCGGTTTCTTGATAGGAAGACCGGTGAGCCAACTGTAGGAAAGACTCGCCCAGAAACTCTTCTTCGTCAACTTACAACAAAAAAGGGTCAGgtaaaattaatttcaatttgttattgtgtacctttgagaacttcttgaatgaaggaattctcggaatgattcctgcattcgacagAG
ACGGAGGAAGAGAAGTGTGAGAGAGAGAGTTTTGGCAAAGAAGACGGAGGAGCAGCCATTCTGAGAAGGCAGTGCAGATTTGCAAAGGAGAGAGACTGACG