sp|Q9M8D3|PUR4_ARATH ----> Probable phosphoribosylformylglycinamidine synthase, chloroplastic/mitochondrial
Intron 1 GTACACTGGT ... CAAATTGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 34.2 | 76 | 45 | 34 |
| A2 | 23.53 | 52 | 20 | 12 |
| A3 | 35.83 | 60 | 37 | 30 |
| A4 | 28.48 | 59 | 28 | 19 |
| A5 | 33.33 | 34 | 22 | 12 |
| A6 | 35.04 | 38 | 30 | 11 |
| A7 | 28.51 | 84 | 43 | 24 |
| A8 | 35.34 | 43 | 30 | 17 |
| A9 | 29.41 | 96 | 46 | 34 |
| A10 | 25.89 | 73 | 40 | 11 |
>TRINITY_DN125307_c0_g1_i5 from sample A1 / Example spliced isoformCGAAATTTAAAATTATCTCAGGGTTGATTCCCGTTCTGTTTATATTGGGGTTTAGGTTAGGGATTTCATGTGAGACTCATTTAGGTCGGCAGAGACTTTGCTGTTCCTTGAAGTTTATATCTTTGTTGTTGATTTATCTGCCATTTTAATTCATAGATAGAAGGCCATTCAGGGGAAGATACCAATATGGGAGAGATGCC
ACAAAACTGCCACAATACCATGGAGGTATGCTGCCAACTTTATAGATTTCTTGCAATGTTAATACCGGCTTTCATGTCTAGCTTCCTCTATGAGAACCAGGCACTTTGCAGGATCTCATGAGCTTTAAGATGATATTTATTTATAAATGAGTGTTGCTCACTTTGAGGATGATGGTAGTTTGTTATTTGCTGGAATAGCG
TCTTGACTAAAGTGATACATAAATGCACAGAATCATGCAGGTGAAAGTTTTGAGGCTATGAGAGGCTCCTCACAAGGTTGCGTTGATACTTCTAAGGCCAAATTGGACATTTCTGTGAAAGCATCTGAATGTTTGATGGAAACCATTGAATTGTGTGAATTTTCATCTTCTAAAGTGACAAGTTATCTTACTGAGAAAGG
AAATGATCCTGAGCAACAACACAGAGTTTCAAATGAGATTGTGAATAGGGCTCTGGAAAGTCCTGCCATATTTGCTAGTAATAGAGCAGTTATAGGAGATTCAGAAGATTTTCCTTCAAAACCAGATAAAGTTGATGTTTGTAAGGAGGTTGTAAGCAGTGCCAATGATAAGGAATCTTCATTGGAGGCATCAAGTCAGA
GTAAAGATGGCAACATGTGTCAGCTTTCTGCAGGCCAGTCTTTGTTATGTGCTTATAAGTTGAAGCCTGAAGAAATTGAAGTTCACTTAAATAATACAGAGAGATCACTGCCCACACCTAGATTTGCAACTTTTCCCATCAAGTTGAAGGTTGAGAATGTTGAACATGAGAGAGAAACTCCACTTATACCTGTAAGGGGC
AATTTTCCTAACATTTCTTTGCCGACACTAAAAGTTAAGAGTGAAGCATTTGAAGACTGTCAAAGTGATGAACTAGACCATATTTCACTTCAATTGAGGCAGAATCTCAGCAAAACAATGCTTGCTGACATGGAATTAAAGATAGACATTTCGAAAGGAGAATGTGATTCTGAGGAAGTCCAGAAGCCCAAAGAAAGAAA
ATTTTCCATCAAGCGAAATAAGAAAAAGACAAAAATATGTTCTGTCGAAACTGCTCTGGAGGAAGATGCCCCTGGACTTTTACAGGTTTTACGTGAAAAAGGTATTATGGATGATATCAAGCTTTATGGTGACTTGGTGAACAGAGATTTGTTAGGGTTTGCCGCTGAAGAAGATAATTTCAAAGAACTTGAAAACGTCA
TTGATAAGCTATGGGGACGGCCTACTGGTTTGCTTAAGATGGGTCGCACACGACAGATAGGGGCTAACAAGCCTACATATTGCTTGACTTGTCTTCTTTCGTTGATTGAACAGACCCGATCTTTACAGCTGCGCAAGTGGCCTGTTGAATGGGGTTGGTGTCGACAGCTTCAGTCATTCATATTTGTATTTGAGAGACAT
AATAGAATAGTCTTGGAGCGTCCAGAATATGGTTATGCCACATACTTCTTTGAGCTGGTGCAATCTCTGCCAATCAAGTGGCAGGTGGGACGATTGGTCACAGTGATGAGTGTTGCCATCTGTAGCAGAACTGCTCTTCTTGAAAACAAGCCTCTGGAGATTGGTGAGGACCTGACTTCAGAGGAAGCAAGCATCCTAGA
AGATTACGGATGGACTCCAAATAGTGGGTTTGGCTCTTTGCTGAACTACTGTGATCGGGTTGTACATGATAGGAAGGTTGATAACGATGACATGGAATGGAGATCGAAAATAGGGAAGCTGCTGATGGATGGTCATTCTCATGGTAGTATCTCAATAACTAATATTCCAAAAAAGCTCCAATACGTTGTTCCAACTGTTA
AGTATGAGAAATAACGATATCTCAAACCTTCAGGCTAGGAGATACCTCGTGTCATATCGAAAGGTCACCCTGACCTTATACAATAATTGAAGGGGCACATGGCTGCATAACTGTGATGCAATACCTGATTATATTATACTTGATGTATAACTTGTACTATTAGAAGATTGCCAAATAGCAACCACTGAAGATGATTGGTG
CGATCCAACTGTTCTATCTCAAATTTATCTTCTTTTACTCATGTTTTGATGTTACGTGTTACACGGTGACATGTTACTCATTTTACAGTGGTTTATTAAATGCTGTGTAACATTTGTCAGTATCCACAAAATGTTTGTGCAAATTGTATCTGTACAAGTTCATTGATTGGCGCGTCCTATATCAGCC
>TRINITY_DN125307_c0_g1_i9 from sample A1 / Example unspliced isoform:ATATCGACTATCCATAAATAACAGAGGCTTCTCATCTCTTTCCAGATAGAAGGCCAATCAAGGGAAGATACCAATATGGGAGAGATGCCACAAAACTGCCACAATACCATGGAGAATCATGCAGGTGAAAGTTTTGAGGCTATGAGAGGCTCCTCACAAGGTTGCGTTGATACTTCTAAGgtacactggtgtacacacta
gaagttttttttggataactggtatgataaagtattatgaattttccctctcagaaaatttgaaattgtcatgtcaaattcaaattgtagGCCAAATTGGACATTTCTGTGAAAGCATCTGAATGTTTGATGGAAACCATTGAATTGTGTGAATTTTCATCTTCTAAAGTGACAAGTTATCTTACTGAGAAAGGAAATGA
TCCTGAGCAACAACACAGAGTTTCAAATGAGATTGTGAATAGGGCTCTGGAAAGTCCTGCCATATTTGCTAGTAATAGAGCAGTTATAGGAGATTCAGAAGATTTTCCTTCAAAACCAGATAAAGTTGATGTTTGTAAGGAGGTTGTAAGCAGT
Intron 2 GTAAAATCTC ... TTAATTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 65 | 2.5 | 4 | 3 |
| A2 | 46.06 | 7 | 6 | 2.5 |
| A3 | 28.72 | 10 | 4 | 2 |
| A4 | 29.16 | 5 | 2 | 1 |
| A5 | 25 | 3 | 1 | 0 |
| A6 | 22.28 | 61.5 | 17.5 | 8.5 |
| A7 | 19.45 | 69 | 16.5 | 13.5 |
| A8 | 28.86 | 70.5 | 28 | 16 |
| A9 | 23.81 | 82 | 25.5 | 12 |
| A10 | 29.62 | 33 | 14 | 3 |
>TRINITY_DN118880_c0_g1_i7 from sample A2 / Example spliced isoformCTAGGGAGATTTCACCATTTTCCTTTATCCCGTGTAATTTTATTTTGTAGACCTTTTGCCTATAAAGCGGACAATGAATTTTGGCTGTCAAATTTCTATATCTATACCAAGAATTGACTCGGAACAAAATTCTAGAGGGAGAAAATGAAGAAATCGCAGGGCTAAGGGTTTGAAGAATTACAGTCAAGCGGATGAGGTGA
GTAGCAGACAAAGAGGAAGAAGACCCAGTACAGCATATCGACTATCCATAAATAACAGAGGCTTCTCATCTCTTTCCAGATAGAAGGCCAATCACGGAAGATACCAATATGGGAGAGATGCCACAAAACTGCCACAATACCATGGAGTATGATGCAGGTGAAAGTTTTGAGGCTATGAGAGGCTCCTCTCAAGGTTGCGT
TGATACTTCTAAGGTTGATTGAGAGCTATTGGGAAAGATGCGGTACCAAGATTTACCCAGGTGGAATACGCACTCAAATATCCCTGTCATAGGAGTAAGGCTTGATGCTAGAAGCTACATTGAAAATTCTGGACTAAATTATACATATACTGGGTTAAGTGGTGGTGCCTGTGCAATTG
>TRINITY_DN118880_c0_g1_i10 from sample A2 / Example unspliced isoform:CTAGGGAGATTTCACCATTTTCCTTTATCCCGTGTAATTTTATTTTGTAGACCTTTTGCCTATAAAGCGGACAATGAATTTTGGCTGTCAAATTTCTATATCTATACCAAGAATTGACTCGGAACAAAATTCTAGAGGGAGAAAATGAAGAAATCGCAGGGCTAAGGGTTTGAAGAATTACAGTCAAGCGGATGAGGTGA
GTAGCAGACAAAGAGGAAGAAGACCCAGTACAGCATATCGACTATCCATAAATAACAGAGGCTTCTCATCTCTTTCCAGATAGAAGGCCAATCACGGAAGATACCAATATGGGAGAGATGCCACAAAACTGCCACAATACCATGGAGTATGATGCAGGTGAAAGTTTTGAGGCTATGAGAGGCTCCTCTCAAGGTTGCGT
TGATACTTCTAAGGTTGATTGAGAGCTATTGGGAAAGATGCGGTACCAAGATTTACCCAGgtaaaatctcatagcttatttcttcataggaatagttttcaacattcgtatttttccactccgagaagcattcagctaagaacatgtcaactttttttattaagctctgaaattttaacaactttaatttcagGTGGAAT
ACGCACTCAAATATCCCTGTCATAGGAGTAAGGCTTGATGCTAGAAGCTACATTTAAAATTCTGGACTAAATTATGTATGGTTTGGCAAAACTATGTATACTTAAGATTAAAAAGACTCTGTAAATTAGTTTTTAATATAGCATAGTATGTAGAATTTATTATTTATTTAAAATTGTTAAAAGTCCAATGTAAGACTTGT
TTCTTATACGTTTACCATTTTATGCAATACCAGAAATATAATAATTGATTCGTCTTACACTCAACTGCCTGCACCTGGGGAGTACTTTTCT
Intron 3 GTACACGTAG ... GAATTTCCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 20.51 | 74.3 | 11.9 | 19.6 |
| A2 | 25.77 | 71.8 | 12.9 | 26.1 |
| A3 | 21.52 | 48.3 | 15.8 | 13.5 |
| A4 | 19.09 | 52.5 | 24.1 | 12.6 |
| A5 | 13.36 | 28 | 18.4 | 4.4 |
| A6 | 21.81 | 157.5 | 16.5 | 45.6 |
| A7 | 20.29 | 179.8 | 22.6 | 46.9 |
| A8 | 22.07 | 193 | 26.3 | 56.4 |
| A9 | 20.21 | 185.8 | 23.9 | 48.4 |
| A10 | 21.28 | 153.5 | 16.3 | 42.9 |
>TRINITY_DN118217_c0_g1_i5 from sample A3 / Example spliced isoformGGATAATAAAGATTAAAATATGATGGGGGTTTCGTGGCCTTCGAAACCCTTTCAAACGAACTGCTTCATGTATGCACATCCTGCCGGGGAAACCGTTTCCTCTTCTGCGCGTTTACACTGTCCCTATGTCCATGTCAACGGATCGATTTCACGGGGTGCCGCAACCCCTTCATTTTCAATTGCTCAAGCACTAGGATCTG
AGATTGATACTAGTATGCATGCTGGATGTTTTTCTACTGTCTTGTTTCTTGAATATACTGGTGCGCGCGTAAAACCGGCATTTAAAATAATTGTACTACTGGTGGACTGGACGGTTGGAGGCATTCTTGTTTCAACGAAATTCACCAAGCGGGCGTGGAATTTCCATTTCTTGCCCGGCTTTCTTTCATGGTCAATTTGC
CGGAGATTGGCTCTCTGCAAAATCACTCATTGAAAAACAGCTTTCTTAATCTATTACAAGGCAGAGGAGTAATTATATGGATTCGGTTCCTGCTTCATCCCTGTCTACGGCTCCCGACCATGTCTCGAGTGCAAATCACAAACCCTTTGTACCGAACATTCCCCGCAAGAATAATAAGAAGAGGCGGAGAATGCGTGGAG
TTATCACAGATCATGTCCCCAGTAATCAGTCCAATTTCACTTGGCATCGGCAGCAAAACCTACCTGTACATGATACTACTACAGCTGAATTGGATGATACTCGGGCCAAAGGACACCTTCGCTCCAAGGTGGAAGGCACCTCAAGAAATGGCAGACAGTTTAATGGTCCAAGCGGGAGTTATTCATATCCTCATCACGAC
AGCTTCCAGTCTCAGCGAGACAGCTGCTACAGATTATGGCAGCAGTTGGATGCAGCTTATGATGCCAGAGAACGGCATCTTTCAATGAAGGAGGAGGATCTTGCTAGGCGAGAACAGGCCGTTCGAACTCAGGAACAACTTATTACACACTGGACGGCACAGGCACAAGCTGAAAGAATGGAAGTTGCTTATATCAGGCA
GCAAGCAATAAAGCTGAAAGAGCAGGTGGATGCAGAAAGGTGCAAATTGGAAGCGGAGAAGGTAGCAAATGAATCAGGTGAAAATGTGGATAAAATCTCTGAAAGAGGCCGAACTTTGCATGATAAGATGGATCTATCACAAGTGGATCATCATCACCCTGAGATAGAAGGCCATTCAGGGGAAGATACCAATATGGGAG
AGATGCCACAAAACTGCCACAATACCATGGAGAATCATGCAGGTGAAAGTTTTGAGGCTATGAGAGGCTCCTCTCAAGGTTGCGTTGATACTTCTAAGACCAAATTGGACATTTCTGTGAAAGCATCTGAATGTTTGATGGAAACCATTGAATTGTGTGAATTTTCATCTTCTAAAGTGACAAGTTATCTTTCTGAGAAA
GGAAATGATCCTGTGCAACAACACAGAGTTTCAAATGAGATTGTGAATAGGGCTCTGGAAAGTCCTGCCATATTTGCTAGTAATAGAGCAGTTATAGGAGATTCAGAAGATTTTCCTTCAAAACCAGATAAAGTTGATGTTTGTAAGGAGGTTGTAAGCAGTGCCAATGATAAGGAATCTTCATTGGAGGCATCAAGTCA
GAGTAAAGATGGCAACATGTGTCAGCTTTCTGCAGGCCAGTCTTTGTTATGTGCTTATAAGTTGAAGCCTGAAGAAATTGAAGTTCACTTAAATAATACAGAGAGATCACTGCCCACACCTAGATTTGCAACTTTTCCCATCAAGTTGAAGGTTGAGAATGTTGAACATGAGAGAGAAACTCCACTTATACCTGTAAGGG
GCAATTTTCCTAACATTTCTTTGCCGACACTAAAAGTTAAGAGTGAAGCATTTGAAGACTGTCAAAGTGATGAACTAGACCATATTTCACTTCAATTGAGGCAGAATCTCAGCAAAACAATGCTTGCTGACATGGAATTAAAGATAGACATTTCGAAAGGAGAATGTGATTCTGAGGAAGTCCAGAAGCCCAAAGAAAGA
AAATTTTCCATCAAGCGAAATAAGAAAAAGACAAAAATATGTTCTGTCGAAACTGCTCTGGAGGAAGATGCCCCTGGACTTTTACAGGTTTTACGTGAAAAAGGTATTATGGATGATATCAAGCTTTATGGTGACTTGGTGAACAGAGATTTGTTAGGGTTTGCCGCTGAAGAAGATAATTTCAAATAACTTGAAAACGT
CATTGATAAGGTCAATTTATTGGATTCTTAATGATGTTGTGATGCTTCTAGTGTTGGCAAAGTTGAAAGCTGTCAGAAAATGGCTACAATCCATGTATGAAACAACATTTGCTGCATTCTGGTTTCAACTTTCTTTGTTTGTGCATATTAAGATGAGTTACTGTGAGCTTATTTGAACTCTTTTCACTGTAGAAAGATTT
CAGGAAGCCTATTGTGATATAAATGCTTCATTTCTTTTCTTCTCTAAGACTAACATCACTTGAAAACTGTTTTGTTCAATTTTGTTATCTCTGCATGGAATTGGGGACCGTGTTCTATTTTTTCTAGCTTTAATGTGAAGCCTACGAGAATGATTTGTGTCGCCTTCACTAATATTGGGGGAGACGTTTGGCAATTTTAT
GGAATTTATTTCAGCTATGGGGACGGCCTACTGGTTTGCTTAAGATGGGTCGCACACGACAGATAGGGGCTAACAAGCCTACATATTGCTTGACTTGTCTTCTTTCGTTGATTGAACAGACCCGATCTTTACAGCTGCGCAAGTGGCCTGTTGAATGGGGTTGGTGTCGACAGCTTCAGTCATTCATATTTGTATTTGAG
AGACATAATAGAATAGTCTTGGAGCGTCCAGAATATGGTTATGCCACATACTTCTTTGAGCTGGTGCAATCTCTGCCAATCAAGTGGCAGGTGGGACGATTGGTCACAGTGATGAGTGTTGCCATCTGTAGCAGAACTGCTCTTCTTGAAAACAAGCCTCTGGAGATTGGTGAGGACCTGACTTCAGAGGAAGCAAGCAT
CCTAGAAGATTACGGATGGACTCCAAATAGTGGGTTTGGCTCTTTGCTGAACTACTGTGATCGGGTTGTACATGATAGGAAGGTTGATAACGATGACATGGAATGGAGATCGAAAATAGGGAAGCTGCTGATGGATGGTCATTCTCATGGTAGTATCTCAATAACTAATATTCCAAAAAAGCTCCAATACGTTGTTCCAA
CTGTTAAGTATGAGAAATAACGATATCTCAAACCTTCAGGCTAGGAGATACCTCGTGTCATATCGAAAGGTCACCCTGACCTTATACAATAATTGAAGGGGCACATGGCTGCATAACTGTGATGCAATACCTGATTATATTATACTTGATGTATAACTTGTACTATTAGAAGATTGCCAAATAGCAACCACTGAAGATGA
TTGGTGCGATCCAACTGTTCTATCTCAAATTTATCTTCTTTTACTCATGTTTTGATGTTACGTGTTACACGGTGACATGTTACTCATTTTACAGTGGTTTATTAAATGCTGTGTAACATTTGTCAGTATCCACAAAATGTTTGTGCAAATTGTATCTGTACAAGTTCATTGATTGGCGCGTCCTATATCAGCAAAAAATT
AAG
>TRINITY_DN118217_c0_g1_i7 from sample A3 / Example unspliced isoform:CCGACCATGAATTTTGGGTGTCGAATTTCTACATTTATACCAAGAATTGACTCGGAAAGAAATTCGGGAGGGAGAAAATGAAGAAATCACAGGGCTAAGGGTGAGAAGAATTACAGTCAAGCGACTGAGGTGAGTAGCAGACGAAGAGGAAGAAGACCCAGTACAGTATATCGGCTATCCAAAAATAACAGAGGCTTCTG
TCTCATCTCTTTCCAGATAGAAGGCCAATCAAGGGAAGATACGAATATGGGAGAGATGCCACAAAACTGCCACAATACCATGGAGAATGATGCAGGTGAAAGTTTTGAGGCTATGAGAGGCTCCTCTCAAGGTTGCGTTGATACTTCTAAGGCCAAATTGGACATTTCTGTGAAAGCATCTGAATGTTTGATGGAAACCA
TTGAATTGTGTGAATTTTCATCTTCTAAAGTGACAAGTTATCTTTCTGAGAAAGGAAATGATCCTGTGCAACAACACAGAGTTTCAAATGAGATTGTGAATAGGGCTCTGGAAAGTCCTGCCATATTTGCTAGTAATAGAGCAGTTATAGGAGATTCAGAAGATTTTCCTTCAAAACCAGATAAAGTTGATGTTTGTAAG
GAGGTTGTAAGCAGTGCCAATGATAAGGAATCTTCATTGGAGGCATCAAGTCAGAGTAAAGATGGCAACATGTGTCAGCTTTCTGCAGGCCAGTCTTTGTTATGTGCTTATAAGTTGAAGCCTGAAGAAATTGAAGTTCACTTAAATAATACAGAGAGATCACTGCCCACACCTAGATTTGCAACTTTTCCCATCAAGTT
GAAGGTTGAGAATGTTGAACATGAGAGAGAAACTCCACTTATACCTGTAAGGGGCAATTTTCCTAACATTTCTTTGCCGACACTAAAAGTTAAGAGTGAAGCATTTGAAGACTGTCAAAGTGATGAACTAGACCATATTTCACTTCAATTGAGGCAGAATCTCAGCAAAACAATGCTTGCTGACATGGAATTAAAGATAG
ACATTTCGAAAGGAGAATGTGATTCTGAGGAAGTCCAGAAGCCCAAAGAAAGAAAATTTTCCATCAAGCGAAATAAGAAAAAGACAAAAATATGTTCTGTCGAAACTGCTCTGGAGGAAGATGCCCCTGGACTTTTACAGGTTTTACGTGAAAAAGGTATTATGGATGATATCAAGCTTTATGGTGACTTGGTGAACAGA
GATTTGTTAGGGTTTGCCGCTGAAGAAGATAATTTCAAAGAACTTGAAAACGTCATTGATAAGCTATGGGGACGGCCTACTGGTTTGCTTAAGATGGGTCGCACACGACAGATAGGGGCTAACAAGCCTACATATTGCTTGACTTGTCTTCTTTCGTTGATTGAACAGgtacacgtagttcatctaatcaggagtagttt
ctttggaacgttgaattaccattctagtatattcagatctgtcaggcatatgccattcctgttaactgcaatcaacttaggtttgtttgttgaatttccagACCCGATCTTTACAGCTGCGCAAGTGGCCTGTTGAATGGGGTTGGTGTCGACAGCTTCAGTCATTCATATTTGTATTTGAGAGACATAATAGAATAGTC
TTGGAGCGTCCAGAATATGGTTATGCCACATACTTCTTTGAGCTGGTGCAATCTCTGCCAATCAAGTGGCAGGTGGGACGATTGGTCACAGTGATGAGTGTTGCCATCTGTAGCAGAACTGCTCTTCTTGAAAACAAGCCTCTGGAGATTGGTGAGGACCTGACTTCAGAGGAAGCAAGCATCCTAGAAGATTACGGATG
GACTCCAAATAGTGGGTTTGGCTCTTTGCTGAACTACTGTGATCGGGTTGTACATGATAGGAAGGTTGATAACGATGACATGGAATGGAGATCGAAAATAGGGAAGCTGCTGATGGATGGTCATTCTCATGGTAGTATCTCAATAACTAATATTCCAAAAAAGCTCCAATACGTTGTTCCAACTGTTAAGTATGAGAAAT
AACGATATCTCAAACCTTCAGGCTAGGAGATACCTCGTGTCATATCGAAAGGTCACCCTGACCTTATACAATAATTGAAGGGGCACATGGCTGCATAACTGTGATGCAATACCTGATTATATTATACTTGATGTATAACTTGTACTATTAGAAGATTGCCAAATAGCAACCACTGAAGATGATTGGTGCGATCCAACTGT
TCTATCTCAAATTTATCTTCTTTTACTCATGTTTTGATGTTACGTGTTACACGGTGACATGTTACTCATTTTACAGTGGTTTATTAAATGCTGTGTAACATTTGTCAGTATCCACAAAATGTTTGTGCAAATTGTATCTGTACAAGTTCATTGATTGGCGCGTCCTATATCAGCAAAAAATTAAG
Intron 4 GTGATCTCAT ... TATAGTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 22.18 | 105.4 | 0 | 30 |
| A2 | 17.94 | 106 | 0 | 23 |
| A3 | 21.71 | 105 | 1 | 29 |
| A4 | 33.4 | 74 | 7 | 37 |
| A5 | 22.29 | 35 | 1 | 10 |
| A6 | 20.94 | 268.6 | 0 | 71 |
| A7 | 21.1 | 278.6 | 0 | 74 |
| A8 | 18.98 | 303.8 | 0 | 71 |
| A9 | 20.54 | 334.2 | 0 | 86 |
| A10 | 18.84 | 251.4 | 7 | 58 |
>TRINITY_DN105148_c0_g1_i11 from sample A4 / Example spliced isoformAAACCGTTTTCAGTTAATTGTGAATGACCAACGAGCCAAACTGTACTGGACATGATATCATGTCTGTGAAGCTTATATAGTTTTCCCAAGGAGGACTTCGTGGATAATCAACGCCGGATAATAAAGATTAAAATATGATGGGGGTTTCGTGGCCTTCGAAACCCTTTCAAACGAACTGCTTCATGTATGCACATCCTGCC
GGGGAAACCGTTTCCTCTTCTGCGCGTTTACACTGTCCCTATGTCCATGTCAACGGATCGATTTCACGGGGTGCCGCAACCCCTTCATTTTCAATTGCTCAAGCACTAGGATCTGAGATTGATACTAGTATGCATGCTGGATGTTTTTCTACTGTCTTGTTTCTTGAATATACTGGTGCGCGCGTAAAACCGGCATTTAA
AATAATTGTACTACTGGTGGACTGGACGGTTGGAGGCATTCTTGTTTCAACGAAATTCACCAAGCGGGCGTGGAATTTCCATTTCTTGCCCGGCTTTCTTTCATGGTCAATTTGCCGGAGATTGGCTCTCTGCAAAATCACTCATTGAAAAACAGCTTTCTTAATCTATTACAAGGCAGAGGAGTAATTATATGGATTCG
GTTCCTGCTTCATCCCTGTCTACGGCTCCCGACCATGTCTCGAGTGCAAATCACAAACCCTTTGTACCGAACATTCCCCGCAAGAATAATAAGAAGAGGCGGAGAATGCGTGGAGTTATCACAGATCATGTCCCCAGTAATCAGTCCAATTTCACTTGGCATCGGCAGCAAAACCTACCTGTACATGATACTACTACAGC
TGAATTGGATGATACTCGGGCCAAAGGACACCTTCGCTCCAAGGTGGAAGGCACCTCAAGAAATGGCAGACAGTTTAATGGTCCAAGCGGGAGTTATTCATATCCTCATCACGACAGCTTCCAGTCTCAGCGAGACAGCTGCTACAGATTATGGCAGCAGTTGGATGCAGCTTATGATGCCAGAGAACGGCATCTTTCAA
TGAAGGAGGAGGATCTTGCTAGGCGAGAACAGGCCGTTCGAACTCAGGAACAACTTATTACACACTGGACGGCACAGGCACAAGCTGAAAGAATGGAAGTTGCTTATATCAGGCAGCAAGCAATAAAGCTGAAAGAGCAGGTGGATGCAGAAAGGTGCAAATTGGAAGCGGAGAAGGTAGCAAATGAATCAGGTGAAAAT
GTGGATAAAATCTCTGAAAGAGGCCGAACTTTGCATGATAAGATGGATCTATCACAAGTGGATCATCATCACCCTGAGATAGAAGGCCATTCAGCGGAAGATACCAATATGGGAGAGATGCCACAAAACTGCCACAATACCATGGAGAATCATGCAGGTGAAAGTTTTGAGGCTATGAGAGGCTCCTCTCAAGGTTGCGT
TGATACTTCTAAGACCAAATTGGACATTTCTGTGAAAGCATCTGAATGTTTGATGGAAACCATTGAATTGTGTGAATTTTCATCTTCTAAAGTGACAAGTTATCTTACTGAGAAAGGAAATGATCCTGAGCAACAACACAGAGTTTCAAATGAGATTGTGAATAGGGCTCTGGAAAGTCCTGCCATATTTGCTAGTAATA
GAGCAGTTATAGGAGATTCAGAAGATTTTCCTTCAAAACCAGATAAAGTTGATGTTTGTAAGGAGGTTGTAAGCAGTGCCAATGATAAGGAATCTTCATTGGAGGCATCAAGTCAGAGTAAAGATGGCAACATGTGTCAGCTTTCTGCAGGCCAGTCTTTGTTATGTGCTTATAAGTTGAAGCCTGAAGAAATTGAAGTT
CACTTAAATAATACAGAGAGATCACTGCCCACACCTAGATTTGCAACTTTTCCCATCAAGTTGAAGGTTGAGAATGTTGAACATGAGAGAGAAACTCCACTTATACCTGTAAGGGGCAATTTTCCTAACATTTCTTTGCCGACACTAAAAGTTAAGAGTGAAGCATTTGAAGACTGTCAAAGTGATGAACTAGACCATAT
TTCACTTCAATTGAGGCAGAATCTCAGCAAAACAATGCTTGCTGACATGGAATTAAAGATAGACATTTCGAAAGGAGAATGTGATTCTGAGGAAGTCCAGAAGCCCAAAGAAAGAAAATTTTCCATCAAGCGAAATAAGAAAAAGACAAAAATATGTTCTGTCGAAACTGCTCTGGAGGAAGATGCCCCTGGACTTTTAC
AGGTTTTACGTGAAAAAGGTATTATGGATGATATCAAGCTTTATGGTGACTTGGTGAACGGAGATTTGTTAGGGTTGGCCGCTGAAGAAGATAATTTCAAAGAACTTGAAAACGTCATTGATAAGCTATGGGGACGGCCTACTGGTTTGCTTAAGATGGGTCGCACACGACAGATAGGGGCTAACAAGCCTACATATTGC
TTGACTTGTCTTCTTTCGTTGATTGAACAGACCCGATCTTTACAGCTGCGCAAGTGGCCTGTTGAATGGGGTTGGTGTCGACAGCTTCAGTCATTCATATTTGTATTTGAGAGACATAATAGAATAGTCTTGGAGCGTCCAGAATATGGTTATGCCACATACTTCTTTGAGCTGGTGCAATCTCTGCCAATCAAGTGGCA
GGTGGGACGATTGGTCACAGTGATGAGTGTTGCCATCTGTAGCAGAACTGCTCTTCTTGAAAACAAGCCTCTGGAGGTAGGGAATCTTCCATTTCCTCAATCTTTAGATTGGTCATCCTTTTGCAACTTGTCAGAAGTTTGTTGTGATGTCATACATCTCTAAAGGTATATCATGTGAACATATTCTTAATTTAATCGGC
TTTCTATGCAGTTGCAACTTGCAGGTGGTTGCTTCAAATTTGTTTTGGTACAATTTTCTGATTGAGCAAATATTTTGACCGCTGTC
>TRINITY_DN105148_c0_g1_i10 from sample A4 / Example unspliced isoform:GCCTGTTGAATGGGGTTGGTGTCCACAGCTTCAGTCATTCATATTTGCATTTGAGAGACATAATAGgtgatctcatttatttttggacatcttttaccttaaaatactgctttgtctattattttatgttggcattttaaaatttaaatatctaattcatatctctatagtgcagAATAGTCTTGGAGCGTCCAGAATAT
GGTTATGCCACATACTTCTTTGAGCTGGTGCAATCTCTGCCAATCAAGTGGCAGGTGGGACGATTGGTCACAGTGATGAGTGTTGCCATCTGTAGCAGAACTGCTCTTCTTGAAAACAAGCCTCTGGAGGTAGGGAATCTTCCATTTCCTCAATCTTTAGATTGGTCATCCTTTTGCAACTTGTCAGAAGTTTGTTGTGA
TGTCATACATCTCTAAAGGTATATCATGTGAACATATTCTTAATTTAATCGGCTTTCTATGCAGTTGCAACTTGCAGGTGGTTGCTTCAAATTTGTTTTGGTACAATTTTCTGATTGAGCAAATATTTTGACCGCTGTC
Intron 5 GTCAATTTAT ... TTTATTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 25 | 90 | 45 | 15 |
| A2 | 25.89 | 83 | 44 | 14 |
| A3 | 32.05 | 68 | 42.2 | 22 |
| A4 | 25.65 | 64.5 | 27.5 | 17 |
| A5 | 17.95 | 40 | 12.5 | 5 |
| A6 | 15.16 | 193 | 39 | 30 |
| A7 | 16.25 | 237 | 66 | 26 |
| A8 | 14.95 | 268.5 | 56.5 | 38 |
| A9 | 17.84 | 259 | 71.5 | 41 |
| A10 | 16.88 | 187 | 59 | 17 |
>TRINITY_DN125307_c0_g1_i3 from sample A1 / Example spliced isoformATAAAGATTAAAATATGATGGGGGTTTCGTGGCCTTCGAAACCCTTTCAAACGAACTGCTTCATGTATGCACATCCTGCCGGGGAAACCGTTTCCTCTTCTGCGCGTTTACACTGTCCCTATGTCCATGTCAACGGATCGATTTTACGGGGTGCCGCAACCCCTTCATTTTCAATTGCTCAAGCACTAGGATCTGAGATT
GATACTAGTATGCATGCTGGATGTTTTTCTACTGTCTTGTTTCTTGAATATACTGGTGCGCGCGTAAAACCGGCATTTAAAATAATTGTACTACTGGTGGACTGGACGGTTGGAGGCATTCTTGTTTCAACGAAATTCACCAAGCGGGCGTGGAATTTCCATTTCTTGCCCGGCTTTCTTTCATGGTCAATTTGCCGGAG
ATTGGCTCTCTGCAAAATCACTCATTGAAAAACAGCTTTCTTAATCTATTACAAGGCAGAGGAGTAATTATATGGATTCGGTTCCTGCTTCATCCCTGTCTACGGCTCCCGACCATGTCTCGAGTGCAAATCACAAACCCTTTGTACCGAACATTCCCCGCAAGAATAATAAGAAGAGGCGGAGAATGCGTGGAGTTATC
ACAGATCATGTCCCCAGTAATCAGTCCAATTTCACTTGGCATCGGCAGCAAAACCTACCTGTACATGATACTACTACAGCTGAATTGGATGATACTCGGGCCAAAGGACACCTTCGCTCCAAGGTGGAAGGCACCTCAAGAAATGGCAGACAGTTTAATGGTCCAAGCGGGAGTTATTCATATCCTCATCACGACAGCTT
CCAGTCTCAGCGAGACAGCTGCTACAGATTATGGCAGCAGTTGGATGCAGCTTATGATGCCAGAGAACGGCATCTTTCAATGAAGGAGGAGGATCTTGCTAGGCGAGAACAGGCCGTTCGAACTCAGGAACAACTTATTACACACTGGACGGCACAGGCACAAGCTGAAAGAATGGAAGTTGCTTATATCAGGCAGCAAG
CAATAAAGCTGAAAGAGCAGGTGGATGCAGAAAGGTGCAAATTGGAAGCGGAGAAGGTAGCAAATGAATCAGGTGAAAATGTGGATAAAATCTCTGAAAGAGGCCGAACTTTGCATGATAAGATGGATCTATCACAAGTGGATCATCATCACCCTGAGATAGAAGGCCATTCAGGGGAAGATACCAATATGGGAGAGATG
CCACAAAACTGCCACAATACCATGGAGAATCATGCAGGTGAAAGTTTTGAGGCTATGAGAGGCTCCTCACAAGGTTGCGTTGATACTTCTAAGACCAAATTGGACATTTCTGTGAAAGCATCTGAATGTTTGATGGAAACCATTGAATTGTGTGAATTTTCATCTTCTAAAGTGACAAGTTATCTTACTGAGAAAGGAAA
TGATCCTGAGCAACAACACAGAGTTTCAAATGAGATTGTGAATAGGGCTCTGGAAAGTCCTGCCATATTTGCTAGTAATAGAGCAGTTATAGGAGATTCAGAAGATTTTCCTTCAAAACCAGATAAAGTTGATGTTTGTAAGGAGGTTGTAAGCAGTGCCAATGATAAGGAATCTTCATTGGAGGCATCAAGTCAGAGTA
AAGATGGCAACATGTGTCAGCTTTCTGCAGGCCAGTCTTTGTTATGTGCTTATAAGTTGAAGCCTGAAGAAATTGAAGTTCACTTAAATAATACAGAGAGATCACTGCCCACACCTAGATTTGCAACTTTTCCCATCAAGTTGAAGGTTGAGAATGTTGAACATGAGAGAGAAACTCCACTTATACCTGTAAGGGGCAAT
TTTCCTAACATTTCTTTGCCGACACTAAAAGTTAAGAGTGAAGCATTTGAAGACTGTCAAAGTGATGAACTAGACCATATTTCACTTCAATTGAGGCAGAATCTCAGCAAAACAATGCTTGCTGACATGGAATTAAAGATAGACATTTCGAAAGGAGAATGTGATTCTGAGGAAGTCCAGAAGCCCAAAGAAAGAAAATT
TTCCATCAAGCGAAATAAGAAAAAGACAAAAATATGTTCTGTCGAAACTGCTCTGGAGGAAGATGCCCCTGGACTTTTACAGGTTTTACGTGAAAAAGGTATTATGGATGATATCAAGCTTTATGGTGACTTGGTGAACAGAGATTTGTTAGGGTTTGCCGCTGAAGAAGATAATTTCAAAGAACTTGAAAACGTCATTG
ATAAGCTATGGGGACGGCCTACTGGTTTGCTTAAGATGGGTCGCACACGACAGATAGGGGCTAACAAGCCTACATATTGCTTGACTTGTCTTCTTTCGTTGATTGAACAGACCCGATCTTTACAGCTGCGCAAGTGGCCTGTTGAATGGGGTTGGTGTCGACAGCTTCAGTCATTCATATTTGTATTTGAGAGACATAAT
AGAATAGTCTTGGAGCGTCCAGAATATGGTTATGCCACATACTTCTTTGAGCTGGTGCAATCTCTGCCAATCAAGTGGCAGGTGGGACGATTGGTCACAGTGATGAGTGTTGCCATCTGTAGCAGAACTGCTCTTCTTGAAAACAAGCCTCTGGAGATTGGTGAGGACCTGACTTCAGAGGAAGCAAGCATCCTAGAAGA
TTACGGATGGACTCCAAATAGTGGGTTTGGCTCTTTGCTGAACTACTGTGATCGGGTTGTACATGATAGGAAGGTTGATAACGATGACATGGAATGGAGATCGAAAATAGGGAAGCTGCTGATGGATGGTCATTCTCATGGTAGTATCTCAATAACTAATATTCCAAAAAAGCTCCAATACGTTGTTCCAACTGTTAAGT
ATGAGAAATAACGATATCTCAAACCTTCAGGCTAGGAGATACCTCGTGTCATATCGAAAGGTCACCCTGACCTTATACAATAATTGAAGGGGCACATGGCTGCATAACTGTGATGCAATACCTGATTATATTATACTTGATGTATAACTTGTACTATTAGAAGATTGCCAAATAGCAACCACTGAAGATGATTGGTGCGA
TCCAACTGTTCTATCTCAAATTTATCTTCTTTTACTCATGTTTTGATGTTACGTGTTACACGGTGACATGTTACTCATTTTACAGTGGTTTATTAAATGCTGTGTAACATTTGTCAGTATCCACAAAATGTTTGTGCAAATTGTATCTGTACAAGTTCATTGATTGGCGCGTCCTATATCAGCC
>TRINITY_DN125307_c0_g1_i1 from sample A1 / Example unspliced isoform:ATAAAGATTAAAATATGATGGGGGTTTCGTGGCCTTCGAAACCCTTTCAAACGAACTGCTTCATGTATGCACATCCTGCCGGGGAAACCGTTTCCTCTTCTGCGCGTTTACACTGTCCCTATGTCCATGTCAACGGATCGATTTTACGGGGTGCCGCAACCCCTTCATTTTCAATTGCTCAAGCACTAGGATCTGAGATT
GATACTAGTATGCATGCTGGATGTTTTTCTACTGTCTTGTTTCTTGAATATACTGGTGCGCGCGTAAAACCGGCATTTAAAATAATTGTACTACTGGTGGACTGGACGGTTGGAGGCATTCTTGTTTCAACGAAATTCACCAAGCGGGCGTGGAATTTCCATTTCTTGCCCGGCTTTCTTTCATGGTCAATTTGCCGGAG
ATTGGCTCTCTGCAAAATCACTCATTGAAAAACAGCTTTCTTAATCTATTACAAGGCAGAGGAGTAATTATATGGATTCGGTTCCTGCTTCATCCCTGTCTACGGCTCCCGACCATGTCTCGAGTGCAAATCACAAACCCTTTGTACCGAACATTCCCCGCAAGAATAATAAGAAGAGGCGGAGAATGCGTGGAGTTATC
ACAGATCATGTCCCCAGTAATCAGTCCAATTTCACTTGGCATCGGCAGCAAAACCTACCTGTACATGATACTACTACAGCTGAATTGGATGATACTCGGGCCAAAGGACACCTTCGCTCCAAGGTGGAAGGCACCTCAAGAAATGGCAGACAGTTTAATGGTCCAAGCGGGAGTTATTCATATCCTCATCACGACAGCTT
CCAGTCTCAGCGAGACAGCTGCTACAGATTATGGCAGCAGTTGGATGCAGCTTATGATGCCAGAGAACGGCATCTTTCAATGAAGGAGGAGGATCTTGCTAGGCGAGAACAGGCCGTTCGAACTCAGGAACAACTTATTACACACTGGACGGCACAGGCACAAGCTGAAAGAATGGAAGTTGCTTATATCAGGCAGCAAG
CAATAAAGCTGAAAGAGCAGGTGGATGCAGAAAGGTGCAAATTGGAAGCGGAGAAGGTAGCAAATGAATCAGGTGAAAATGTGGATAAAATCTCTGAAAGAGGCCGAACTTTGCATGATAAGATGGATCTATCACAAGTGGATCATCATCACCCTGAGATAGAAGGCCATTCAGGGGAAGATACCAATATGGGAGAGATG
CCACAAAACTGCCACAATACCATGGAGAATCATGCAGGTGAAAGTTTTGAGGCTATGAGAGGCTCCTCACAAGGTTGCGTTGATACTTCTAAGACCAAATTGGACATTTCTGTGAAAGCATCTGAATGTTTGATGGAAACCATTGAATTGTGTGAATTTTCATCTTCTAAAGTGACAAGTTATCTTACTGAGAAAGGAAA
TGATCCTGAGCAACAACACAGAGTTTCAAATGAGATTGTGAATAGGGCTCTGGAAAGTCCTGCCATATTTGCTAGTAATAGAGCAGTTATAGGAGATTCAGAAGATTTTCCTTCAAAACCAGATAAAGTTGATGTTTGTAAGGAGGTTGTAAGCAGTGCCAATGATAAGGAATCTTCATTGGAGGCATCAAGTCAGAGTA
AAGATGGCAACATGTGTCAGCTTTCTGCAGGCCAGTCTTTGTTATGTGCTTATAAGTTGAAGCCTGAAGAAATTGAAGTTCACTTAAATAATACAGAGAGATCACTGCCCACACCTAGATTTGCAACTTTTCCCATCAAGTTGAAGGTTGAGAATGTTGAACATGAGAGAGAAACTCCACTTATACCTGTAAGGGGCAAT
TTTCCTAACATTTCTTTGCCGACACTAAAAGTTAAGAGTGAAGCATTTGAAGACTGTCAAAGTGATGAACTAGACCATATTTCACTTCAATTGAGGCAGAATCTCAGCAAAACAATGCTTGCTGACATGGAATTAAAGATAGACATTTCGAAAGGAGAATGTGATTCTGAGGAAGTCCAGAAGCCCAAAGAAAGAAAATT
TTCCATCAAGCGAAATAAGAAAAAGACAAAAATATGTTCTGTCGAAACTGCTCTGGAGGAAGATGCCCCTGGACTTTTACAGGTTTTACGTGAAAAAGGTATTATGGATGATATCAAGCTTTATGGTGACTTGGTGAACAGAGATTTGTTAGGGTTTGCCGCTGAAGAAGATAATTTCAAATAACTTGAAAACGTCATTG
ATAAGgtcaatttattggattcttaatgatgttgtgatgcttctagtgttggcaaagttgaaagctgtcagactatgcctacaatccatgtatgaaacaacatttgctgcattctggtttcaactttctttgtttgtgcatattaagatgagttactgtgaccttatttgaactctcttcactgtagaaagatttcagga
agcctattgtgatataaatgcttcatttgttttcttctctgagactaacatcacctgaaaactgttttgttcaattttgttatctctgcatggaattggggaccgtgttctattttttctagctttaatgtgaagcctacgagaatgatttgtgtcgccttcactaatattgggggagacgtttggcaattttatggaat
ttatttcagCTATGGGGACGGCCTACTGGTTTGCTTAAGATGGGTCGCACACGACAGATAGGGGCTAACAAGCCTACATATTGCTTGACTTGTCTTCTTTCGTTGATTGAACAGACCCGATCTTTACAGCTGCGCAAGTGGCCTGTTGAATGGGGTTGGTGTCGACAGCTTCAGTCATTCATATTTGTATTTGAGAGACA
TAATAGAATAGTCTTGGAGCGTCCAGAATATGGTTATGCCACATACTTCTTTGAGCTGGTGCAATCTCTGCCAATCAAGTGGCAGGTGGGACGATTGGTCACAGTGATGAGTGTTGCCATCTGTAGCAGAACTGCTCTTCTTGAAAACAAGCCTCTGGAGATTGGTGAGGACCTGACTTCAGAGGAAGCAAGCATCCTAG
AAGATTACGGATGGACTCCAAATAGTGGGTTTGGCTCTTTGCTGAACTACTGTGATCGGGTTGTACATGATAGGAAGGTTGATAACGATGACATGGAATGGAGATCGAAAATAGGGAAGCTGCTGATGGATGGTCATTCTCATGGTAGTATCTCAATAACTAATATTCCAAAAAAGCTCCAATACGTTGTTCCAACTGTT
AAGTATGAGAAATAACGATATCTCAAACCTTCAGGCTAGGAGATACCTCGTGTCATATCGAAAGGTCACCCTGACCTTATACAATAATTGAAGGGGCACATGGCTGCATAACTGTGATGCAATACCTGATTATATTATACTTGATGTATAACTTGTACTATTAGAAGATTGCCAAATAGCAACCACTGAAGATGATTGGT
GCGATCCAACTGTTCTATCTCAAATTTATCTTCTTTTACTCATGTTTTGATGTTACGTGTTACACGGTGACATGTTACTCATTTTACAGTGGTTTATTAAATGCTGTGTAACATTTGTCAGTATCCACAAAATGTTTGTGCAAATTGTATCTGTACAAGTTCATTGATTGGCGCGTCCTATATCAGCC
Intron 6 GTATGCTGCC ... AAATGCACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 21.09 | 101.2 | 8 | 26.6 |
| A2 | 20.25 | 73.2 | 9 | 17.4 |
| A3 | 24.27 | 85 | 12.6 | 26 |
| A4 | 24.02 | 60.8 | 4 | 17.6 |
| A5 | 19.18 | 50 | 0 | 11.4 |
| A6 | 14.61 | 71 | 0 | 11.4 |
| A7 | 13.13 | 145.6 | 0 | 21 |
| A8 | 13.56 | 66 | 1 | 9.6 |
| A9 | 16.12 | 144 | 0 | 27.2 |
| A10 | 17.81 | 128.2 | 0 | 27.2 |
>TRINITY_DN125307_c0_g1_i3 from sample A1 / Example spliced isoformATAAAGATTAAAATATGATGGGGGTTTCGTGGCCTTCGAAACCCTTTCAAACGAACTGCTTCATGTATGCACATCCTGCCGGGGAAACCGTTTCCTCTTCTGCGCGTTTACACTGTCCCTATGTCCATGTCAACGGATCGATTTTACGGGGTGCCGCAACCCCTTCATTTTCAATTGCTCAAGCACTAGGATCTGAGATT
GATACTAGTATGCATGCTGGATGTTTTTCTACTGTCTTGTTTCTTGAATATACTGGTGCGCGCGTAAAACCGGCATTTAAAATAATTGTACTACTGGTGGACTGGACGGTTGGAGGCATTCTTGTTTCAACGAAATTCACCAAGCGGGCGTGGAATTTCCATTTCTTGCCCGGCTTTCTTTCATGGTCAATTTGCCGGAG
ATTGGCTCTCTGCAAAATCACTCATTGAAAAACAGCTTTCTTAATCTATTACAAGGCAGAGGAGTAATTATATGGATTCGGTTCCTGCTTCATCCCTGTCTACGGCTCCCGACCATGTCTCGAGTGCAAATCACAAACCCTTTGTACCGAACATTCCCCGCAAGAATAATAAGAAGAGGCGGAGAATGCGTGGAGTTATC
ACAGATCATGTCCCCAGTAATCAGTCCAATTTCACTTGGCATCGGCAGCAAAACCTACCTGTACATGATACTACTACAGCTGAATTGGATGATACTCGGGCCAAAGGACACCTTCGCTCCAAGGTGGAAGGCACCTCAAGAAATGGCAGACAGTTTAATGGTCCAAGCGGGAGTTATTCATATCCTCATCACGACAGCTT
CCAGTCTCAGCGAGACAGCTGCTACAGATTATGGCAGCAGTTGGATGCAGCTTATGATGCCAGAGAACGGCATCTTTCAATGAAGGAGGAGGATCTTGCTAGGCGAGAACAGGCCGTTCGAACTCAGGAACAACTTATTACACACTGGACGGCACAGGCACAAGCTGAAAGAATGGAAGTTGCTTATATCAGGCAGCAAG
CAATAAAGCTGAAAGAGCAGGTGGATGCAGAAAGGTGCAAATTGGAAGCGGAGAAGGTAGCAAATGAATCAGGTGAAAATGTGGATAAAATCTCTGAAAGAGGCCGAACTTTGCATGATAAGATGGATCTATCACAAGTGGATCATCATCACCCTGAGATAGAAGGCCATTCAGGGGAAGATACCAATATGGGAGAGATG
CCACAAAACTGCCACAATACCATGGAGAATCATGCAGGTGAAAGTTTTGAGGCTATGAGAGGCTCCTCACAAGGTTGCGTTGATACTTCTAAGACCAAATTGGACATTTCTGTGAAAGCATCTGAATGTTTGATGGAAACCATTGAATTGTGTGAATTTTCATCTTCTAAAGTGACAAGTTATCTTACTGAGAAAGGAAA
TGATCCTGAGCAACAACACAGAGTTTCAAATGAGATTGTGAATAGGGCTCTGGAAAGTCCTGCCATATTTGCTAGTAATAGAGCAGTTATAGGAGATTCAGAAGATTTTCCTTCAAAACCAGATAAAGTTGATGTTTGTAAGGAGGTTGTAAGCAGTGCCAATGATAAGGAATCTTCATTGGAGGCATCAAGTCAGAGTA
AAGATGGCAACATGTGTCAGCTTTCTGCAGGCCAGTCTTTGTTATGTGCTTATAAGTTGAAGCCTGAAGAAATTGAAGTTCACTTAAATAATACAGAGAGATCACTGCCCACACCTAGATTTGCAACTTTTCCCATCAAGTTGAAGGTTGAGAATGTTGAACATGAGAGAGAAACTCCACTTATACCTGTAAGGGGCAAT
TTTCCTAACATTTCTTTGCCGACACTAAAAGTTAAGAGTGAAGCATTTGAAGACTGTCAAAGTGATGAACTAGACCATATTTCACTTCAATTGAGGCAGAATCTCAGCAAAACAATGCTTGCTGACATGGAATTAAAGATAGACATTTCGAAAGGAGAATGTGATTCTGAGGAAGTCCAGAAGCCCAAAGAAAGAAAATT
TTCCATCAAGCGAAATAAGAAAAAGACAAAAATATGTTCTGTCGAAACTGCTCTGGAGGAAGATGCCCCTGGACTTTTACAGGTTTTACGTGAAAAAGGTATTATGGATGATATCAAGCTTTATGGTGACTTGGTGAACAGAGATTTGTTAGGGTTTGCCGCTGAAGAAGATAATTTCAAAGAACTTGAAAACGTCATTG
ATAAGCTATGGGGACGGCCTACTGGTTTGCTTAAGATGGGTCGCACACGACAGATAGGGGCTAACAAGCCTACATATTGCTTGACTTGTCTTCTTTCGTTGATTGAACAGACCCGATCTTTACAGCTGCGCAAGTGGCCTGTTGAATGGGGTTGGTGTCGACAGCTTCAGTCATTCATATTTGTATTTGAGAGACATAAT
AGAATAGTCTTGGAGCGTCCAGAATATGGTTATGCCACATACTTCTTTGAGCTGGTGCAATCTCTGCCAATCAAGTGGCAGGTGGGACGATTGGTCACAGTGATGAGTGTTGCCATCTGTAGCAGAACTGCTCTTCTTGAAAACAAGCCTCTGGAGATTGGTGAGGACCTGACTTCAGAGGAAGCAAGCATCCTAGAAGA
TTACGGATGGACTCCAAATAGTGGGTTTGGCTCTTTGCTGAACTACTGTGATCGGGTTGTACATGATAGGAAGGTTGATAACGATGACATGGAATGGAGATCGAAAATAGGGAAGCTGCTGATGGATGGTCATTCTCATGGTAGTATCTCAATAACTAATATTCCAAAAAAGCTCCAATACGTTGTTCCAACTGTTAAGT
ATGAGAAATAACGATATCTCAAACCTTCAGGCTAGGAGATACCTCGTGTCATATCGAAAGGTCACCCTGACCTTATACAATAATTGAAGGGGCACATGGCTGCATAACTGTGATGCAATACCTGATTATATTATACTTGATGTATAACTTGTACTATTAGAAGATTGCCAAATAGCAACCACTGAAGATGATTGGTGCGA
TCCAACTGTTCTATCTCAAATTTATCTTCTTTTACTCATGTTTTGATGTTACGTGTTACACGGTGACATGTTACTCATTTTACAGTGGTTTATTAAATGCTGTGTAACATTTGTCAGTATCCACAAAATGTTTGTGCAAATTGTATCTGTACAAGTTCATTGATTGGCGCGTCCTATATCAGCC
>TRINITY_DN125307_c0_g1_i5 from sample A1 / Example unspliced isoform:CGAAATTTAAAATTATCTCAGGGTTGATTCCCGTTCTGTTTATATTGGGGTTTAGGTTAGGGATTTCATGTGAGACTCATTTAGGTCGGCAGAGACTTTGCTGTTCCTTGAAGTTTATATCTTTGTTGTTGATTTATCTGCCATTTTAATTCATAGATAGAAGGCCATTCAGGGGAAGATACCAATATGGGAGAGATGCC
ACAAAACTGCCACAATACCATGGAGgtatgctgccaactttatagatttcttgcaatgttaataccggctttcatgtctagcttcctctatgagaaccaggcactttgcaggatctcatgagctttaagatgatatttatttataaatgagtgttgctcactttgaggatgatggtagtttgttatttgctggaatagcg
tcttgactaaagtgatacataaatgcacagAATCATGCAGGTGAAAGTTTTGAGGCTATGAGAGGCTCCTCACAAGGTTGCGTTGATACTTCTAAGGCCAAATTGGACATTTCTGTGAAAGCATCTGAATGTTTGATGGAAACCATTGAATTGTGTGAATTTTCATCTTCTAAAGTGACAAGTTATCTTACTGAGAAAGG
AAATGATCCTGAGCAACAACACAGAGTTTCAAATGAGATTGTGAATAGGGCTCTGGAAAGTCCTGCCATATTTGCTAGTAATAGAGCAGTTATAGGAGATTCAGAAGATTTTCCTTCAAAACCAGATAAAGTTGATGTTTGTAAGGAGGTTGTAAGCAGTGCCAATGATAAGGAATCTTCATTGGAGGCATCAAGTCAGA
GTAAAGATGGCAACATGTGTCAGCTTTCTGCAGGCCAGTCTTTGTTATGTGCTTATAAGTTGAAGCCTGAAGAAATTGAAGTTCACTTAAATAATACAGAGAGATCACTGCCCACACCTAGATTTGCAACTTTTCCCATCAAGTTGAAGGTTGAGAATGTTGAACATGAGAGAGAAACTCCACTTATACCTGTAAGGGGC
AATTTTCCTAACATTTCTTTGCCGACACTAAAAGTTAAGAGTGAAGCATTTGAAGACTGTCAAAGTGATGAACTAGACCATATTTCACTTCAATTGAGGCAGAATCTCAGCAAAACAATGCTTGCTGACATGGAATTAAAGATAGACATTTCGAAAGGAGAATGTGATTCTGAGGAAGTCCAGAAGCCCAAAGAAAGAAA
ATTTTCCATCAAGCGAAATAAGAAAAAGACAAAAATATGTTCTGTCGAAACTGCTCTGGAGGAAGATGCCCCTGGACTTTTACAGGTTTTACGTGAAAAAGGTATTATGGATGATATCAAGCTTTATGGTGACTTGGTGAACAGAGATTTGTTAGGGTTTGCCGCTGAAGAAGATAATTTCAAAGAACTTGAAAACGTCA
TTGATAAGCTATGGGGACGGCCTACTGGTTTGCTTAAGATGGGTCGCACACGACAGATAGGGGCTAACAAGCCTACATATTGCTTGACTTGTCTTCTTTCGTTGATTGAACAGACCCGATCTTTACAGCTGCGCAAGTGGCCTGTTGAATGGGGTTGGTGTCGACAGCTTCAGTCATTCATATTTGTATTTGAGAGACAT
AATAGAATAGTCTTGGAGCGTCCAGAATATGGTTATGCCACATACTTCTTTGAGCTGGTGCAATCTCTGCCAATCAAGTGGCAGGTGGGACGATTGGTCACAGTGATGAGTGTTGCCATCTGTAGCAGAACTGCTCTTCTTGAAAACAAGCCTCTGGAGATTGGTGAGGACCTGACTTCAGAGGAAGCAAGCATCCTAGA
AGATTACGGATGGACTCCAAATAGTGGGTTTGGCTCTTTGCTGAACTACTGTGATCGGGTTGTACATGATAGGAAGGTTGATAACGATGACATGGAATGGAGATCGAAAATAGGGAAGCTGCTGATGGATGGTCATTCTCATGGTAGTATCTCAATAACTAATATTCCAAAAAAGCTCCAATACGTTGTTCCAACTGTTA
AGTATGAGAAATAACGATATCTCAAACCTTCAGGCTAGGAGATACCTCGTGTCATATCGAAAGGTCACCCTGACCTTATACAATAATTGAAGGGGCACATGGCTGCATAACTGTGATGCAATACCTGATTATATTATACTTGATGTATAACTTGTACTATTAGAAGATTGCCAAATAGCAACCACTGAAGATGATTGGTG
CGATCCAACTGTTCTATCTCAAATTTATCTTCTTTTACTCATGTTTTGATGTTACGTGTTACACGGTGACATGTTACTCATTTTACAGTGGTTTATTAAATGCTGTGTAACATTTGTCAGTATCCACAAAATGTTTGTGCAAATTGTATCTGTACAAGTTCATTGATTGGCGCGTCCTATATCAGCC
Intron 7 GTAATAGCTA ... TGTTTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 12.09 | 78 | 15.1 | 10.8 |
| A2 | 13.78 | 69 | 13.1 | 11.2 |
| A3 | 22.85 | 71 | 7.2 | 22.2 |
| A4 | 12.89 | 73 | 11 | 11 |
| A5 | 11.77 | 29 | 2.7 | 4 |
| A6 | 0 | 25 | 2.1 | 0 |
| A7 | 12.25 | 83 | 4.3 | 12 |
| A8 | 13.34 | 15 | 0 | 2.4 |
| A9 | 12.97 | 69 | 6.9 | 10.6 |
| A10 | 12.3 | 88 | 3.2 | 12.8 |
>TRINITY_DN125307_c0_g1_i3 from sample A1 / Example spliced isoformATAAAGATTAAAATATGATGGGGGTTTCGTGGCCTTCGAAACCCTTTCAAACGAACTGCTTCATGTATGCACATCCTGCCGGGGAAACCGTTTCCTCTTCTGCGCGTTTACACTGTCCCTATGTCCATGTCAACGGATCGATTTTACGGGGTGCCGCAACCCCTTCATTTTCAATTGCTCAAGCACTAGGATCTGAGATT
GATACTAGTATGCATGCTGGATGTTTTTCTACTGTCTTGTTTCTTGAATATACTGGTGCGCGCGTAAAACCGGCATTTAAAATAATTGTACTACTGGTGGACTGGACGGTTGGAGGCATTCTTGTTTCAACGAAATTCACCAAGCGGGCGTGGAATTTCCATTTCTTGCCCGGCTTTCTTTCATGGTCAATTTGCCGGAG
ATTGGCTCTCTGCAAAATCACTCATTGAAAAACAGCTTTCTTAATCTATTACAAGGCAGAGGAGTAATTATATGGATTCGGTTCCTGCTTCATCCCTGTCTACGGCTCCCGACCATGTCTCGAGTGCAAATCACAAACCCTTTGTACCGAACATTCCCCGCAAGAATAATAAGAAGAGGCGGAGAATGCGTGGAGTTATC
ACAGATCATGTCCCCAGTAATCAGTCCAATTTCACTTGGCATCGGCAGCAAAACCTACCTGTACATGATACTACTACAGCTGAATTGGATGATACTCGGGCCAAAGGACACCTTCGCTCCAAGGTGGAAGGCACCTCAAGAAATGGCAGACAGTTTAATGGTCCAAGCGGGAGTTATTCATATCCTCATCACGACAGCTT
CCAGTCTCAGCGAGACAGCTGCTACAGATTATGGCAGCAGTTGGATGCAGCTTATGATGCCAGAGAACGGCATCTTTCAATGAAGGAGGAGGATCTTGCTAGGCGAGAACAGGCCGTTCGAACTCAGGAACAACTTATTACACACTGGACGGCACAGGCACAAGCTGAAAGAATGGAAGTTGCTTATATCAGGCAGCAAG
CAATAAAGCTGAAAGAGCAGGTGGATGCAGAAAGGTGCAAATTGGAAGCGGAGAAGGTAGCAAATGAATCAGGTGAAAATGTGGATAAAATCTCTGAAAGAGGCCGAACTTTGCATGATAAGATGGATCTATCACAAGTGGATCATCATCACCCTGAGATAGAAGGCCATTCAGGGGAAGATACCAATATGGGAGAGATG
CCACAAAACTGCCACAATACCATGGAGAATCATGCAGGTGAAAGTTTTGAGGCTATGAGAGGCTCCTCACAAGGTTGCGTTGATACTTCTAAGACCAAATTGGACATTTCTGTGAAAGCATCTGAATGTTTGATGGAAACCATTGAATTGTGTGAATTTTCATCTTCTAAAGTGACAAGTTATCTTACTGAGAAAGGAAA
TGATCCTGAGCAACAACACAGAGTTTCAAATGAGATTGTGAATAGGGCTCTGGAAAGTCCTGCCATATTTGCTAGTAATAGAGCAGTTATAGGAGATTCAGAAGATTTTCCTTCAAAACCAGATAAAGTTGATGTTTGTAAGGAGGTTGTAAGCAGTGCCAATGATAAGGAATCTTCATTGGAGGCATCAAGTCAGAGTA
AAGATGGCAACATGTGTCAGCTTTCTGCAGGCCAGTCTTTGTTATGTGCTTATAAGTTGAAGCCTGAAGAAATTGAAGTTCACTTAAATAATACAGAGAGATCACTGCCCACACCTAGATTTGCAACTTTTCCCATCAAGTTGAAGGTTGAGAATGTTGAACATGAGAGAGAAACTCCACTTATACCTGTAAGGGGCAAT
TTTCCTAACATTTCTTTGCCGACACTAAAAGTTAAGAGTGAAGCATTTGAAGACTGTCAAAGTGATGAACTAGACCATATTTCACTTCAATTGAGGCAGAATCTCAGCAAAACAATGCTTGCTGACATGGAATTAAAGATAGACATTTCGAAAGGAGAATGTGATTCTGAGGAAGTCCAGAAGCCCAAAGAAAGAAAATT
TTCCATCAAGCGAAATAAGAAAAAGACAAAAATATGTTCTGTCGAAACTGCTCTGGAGGAAGATGCCCCTGGACTTTTACAGGTTTTACGTGAAAAAGGTATTATGGATGATATCAAGCTTTATGGTGACTTGGTGAACAGAGATTTGTTAGGGTTTGCCGCTGAAGAAGATAATTTCAAAGAACTTGAAAACGTCATTG
ATAAGCTATGGGGACGGCCTACTGGTTTGCTTAAGATGGGTCGCACACGACAGATAGGGGCTAACAAGCCTACATATTGCTTGACTTGTCTTCTTTCGTTGATTGAACAGACCCGATCTTTACAGCTGCGCAAGTGGCCTGTTGAATGGGGTTGGTGTCGACAGCTTCAGTCATTCATATTTGTATTTGAGAGACATAAT
AGAATAGTCTTGGAGCGTCCAGAATATGGTTATGCCACATACTTCTTTGAGCTGGTGCAATCTCTGCCAATCAAGTGGCAGGTGGGACGATTGGTCACAGTGATGAGTGTTGCCATCTGTAGCAGAACTGCTCTTCTTGAAAACAAGCCTCTGGAGATTGGTGAGGACCTGACTTCAGAGGAAGCAAGCATCCTAGAAGA
TTACGGATGGACTCCAAATAGTGGGTTTGGCTCTTTGCTGAACTACTGTGATCGGGTTGTACATGATAGGAAGGTTGATAACGATGACATGGAATGGAGATCGAAAATAGGGAAGCTGCTGATGGATGGTCATTCTCATGGTAGTATCTCAATAACTAATATTCCAAAAAAGCTCCAATACGTTGTTCCAACTGTTAAGT
ATGAGAAATAACGATATCTCAAACCTTCAGGCTAGGAGATACCTCGTGTCATATCGAAAGGTCACCCTGACCTTATACAATAATTGAAGGGGCACATGGCTGCATAACTGTGATGCAATACCTGATTATATTATACTTGATGTATAACTTGTACTATTAGAAGATTGCCAAATAGCAACCACTGAAGATGATTGGTGCGA
TCCAACTGTTCTATCTCAAATTTATCTTCTTTTACTCATGTTTTGATGTTACGTGTTACACGGTGACATGTTACTCATTTTACAGTGGTTTATTAAATGCTGTGTAACATTTGTCAGTATCCACAAAATGTTTGTGCAAATTGTATCTGTACAAGTTCATTGATTGGCGCGTCCTATATCAGCC
>TRINITY_DN125307_c0_g1_i2 from sample A1 / Example unspliced isoform:ATAAAGATTAAAATATGATGGGGGTTTCGTGGCCTTCGAAACCCTTTCAAACGAACTGCTTCATGTATGCACATCCTGCCGGGGAAACCGTTTCCTCTTCTGCGCGTTTACACTGTCCCTATGTCCATGTCAACGGATCGATTTTACGGGGTGCCGCAACCCCTTCATTTTCAATTGCTCAAGCACTAGGATCTGAGATT
GATACTAGTATGCATGCTGGATGTTTTTCTACTGTCTTGTTTCTTGAATATACTGGTGCGCGCGTAAAACCGGCATTTAAAATAATTGTACTACTGGTGGACTGGACGGTTGGAGGCATTCTTGTTTCAACGAAATTCACCAAGCGGGCGTGGAATTTCCATTTCTTGCCCgtaatagctacaacattcattcagttgtt
tttcatgcataccgcaccttagcttttgtcaggtcattattatcaaggtttcaatccactgttctgtcaatgtgtttttcagGGCTTTCTTTCATGGTCAATTTGCCGGAGATTGGCTCTCTGCAAAATCACTCATTGAAAAACAGCTTTCTTAATCTATTACAAGGCAGAGGAGTAATTATATGGATTCGGTTCCTGCT
TCATCCCTGTCTACGGCTCCCGACCATGTCTCGAGTGCAAATCACAAACCCTTTGTACCGAACATTCCCCGCAAGAATAATAAGAAGAGGCGGAGAATGCGTGGAGTTATCACAGATCATGTCCCCAGTAATCAGTCCAATTTCACTTGGCATCGGCAGCAAAACCTACCTGTACATGATACTACTACAGCTGAATTGGA
TGATACTCGGGCCAAAGGACACCTTCGCTCCAAGGTGGAAGGCACCTCAAGAAATGGCAGACAGTTTAATGGTCCAAGCGGGAGTTATTCATATCCTCATCACGACAGCTTCCAGTCTCAGCGAGACAGCTGCTACAGATTATGGCAGCAGTTGGATGCAGCTTATGATGCCAGAGAACGGCATCTTTCAATGAAGGAGG
AGGATCTTGCTAGGCGAGAACAGGCCGTTCGAACTCAGGAACAACTTATTACACACTGGACGGCACAGGCACAAGCTGAAAGAATGGAAGTTGCTTATATCAGGCAGCAAGCAATAAAGCTGAAAGAGCAGGTGGATGCAGAAAGGTGCAAATTGGAAGCGGAGAAGGTAGCAAATGAATCAGGTGAAAATGTGGATAAA
ATCTCTGAAAGAGGCCGAACTTTGCATGATAAGATGGATCTATCACAAGTGGATCATCATCACCCTGAGATAGAAGGCCATTCAGGGGAAGATACCAATATGGGAGAGATGCCACAAAACTGCCACAATACCATGGAGAATCATGCAGGTGAAAGTTTTGAGGCTATGAGAGGCTCCTCACAAGGTTGCGTTGATACTTC
TAAGACCAAATTGGACATTTCTGTGAAAGCATCTGAATGTTTGATGGAAACCATTGAATTGTGTGAATTTTCATCTTCTAAAGTGACAAGTTATCTTACTGAGAAAGGAAATGATCCTGAGCAACAACACAGAGTTTCAAATGAGATTGTGAATAGGGCTCTGGAAAGTCCTGCCATATTTGCTAGTAATAGAGCAGTTA
TAGGAGATTCAGAAGATTTTCCTTCAAAACCAGATAAAGTTGATGTTTGTAAGGAGGTTGTAAGCAGTGCCAATGATAAGGAATCTTCATTGGAGGCATCAAGTCAGAGTAAAGATGGCAACATGTGTCAGCTTTCTGCAGGCCAGTCTTTGTTATGTGCTTATAAGTTGAAGCCTGAAGAAATTGAAGTTCACTTAAAT
AATACAGAGAGATCACTGCCCACACCTAGATTTGCAACTTTTCCCATCAAGTTGAAGGTTGAGAATGTTGAACATGAGAGAGAAACTCCACTTATACCTGTAAGGGGCAATTTTCCTAACATTTCTTTGCCGACACTAAAAGTTAAGAGTGAAGCATTTGAAGACTGTCAAAGTGATGAACTAGACCATATTTCACTTCA
ATTGAGGCAGAATCTCAGCAAAACAATGCTTGCTGACATGGAATTAAAGATAGACATTTCGAAAGGAGAATGTGATTCTGAGGAAGTCCAGAAGCCCAAAGAAAGAAAATTTTCCATCAAGCGAAATAAGAAAAAGACAAAAATATGTTCTGTCGAAACTGCTCTGGAGGAAGATGCCCCTGGACTTTTACAGGTTTTAC
GTGAAAAAGGTATTATGGATGATATCAAGCTTTATGGTGACTTGGTGAACAGAGATTTGTTAGGGTTTGCCGCTGAAGAAGATAATTTCAAAGAACTTGAAAACGTCATTGATAAGCTATGGGGACGGCCTACTGGTTTGCTTAAGATGGGTCGCACACGACAGATAGGGGCTAACAAGCCTACATATTGCTTGACTTGT
CTTCTTTCGTTGATTGAACAGACCCGATCTTTACAGCTGCGCAAGTGGCCTGTTGAATGGGGTTGGTGTCGACAGCTTCAGTCATTCATATTTGTATTTGAGAGACATAATAGAATAGTCTTGGAGCGTCCAGAATATGGTTATGCCACATACTTCTTTGAGCTGGTGCAATCTCTGCCAATCAAGTGGCAGGTGGGACG
ATTGGTCACAGTGATGAGTGTTGCCATCTGTAGCAGAACTGCTCTTCTTGAAAACAAGCCTCTGGAGATTGGTGAGGACCTGACTTCAGAGGAAGCAAGCATCCTAGAAGATTACGGATGGACTCCAAATAGTGGGTTTGGCTCTTTGCTGAACTACTGTGATCGGGTTGTACATGATAGGAAGGTTGATAACGATGACA
TGGAATGGAGATCGAAAATAGGGAAGCTGCTGATGGATGGTCATTCTCATGGTAGTATCTCAATAACTAATATTCCAAAAAAGCTCCAATACGTTGTTCCAACTGTTAAGTATGAGAAATAACGATATCTCAAACCTTCAGGCTAGGAGATACCTCGTGTCATATCGAAAGGTCACCCTGACCTTATACAATAATTGAAG
GGGCACATGGCTGCATAACTGTGATGCAATACCTGATTATATTATACTTGATGTATAACTTGTACTATTAGAAGATTGCCAAATAGCAACCACTGAAGATGATTGGTGCGATCCAACTGTTCTATCTCAAATTTATCTTCTTTTACTCATGTTTTGATGTTACGTGTTACACGGTGACATGTTACTCATTTTACAGTGGT
TTATTAAATGCTGTGTAACATTTGTCAGTATCCACAAAATGTTTGTGCAAATTGTATCTGTACAAGTTCATTGATTGGCGCGTCCTATATCAGCC
Intron 8 GTGATCTTAT ... TATAGTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 21.95 | 106.8 | 0.3 | 30 |
| A2 | 17.27 | 110.5 | 0 | 23 |
| A3 | 21.33 | 107.3 | 1.1 | 29 |
| A4 | 32.63 | 75.5 | 6.4 | 36.5 |
| A5 | 21.91 | 35.8 | 1 | 10 |
| A6 | 20.67 | 272.9 | 0 | 71 |
| A7 | 20.54 | 287.5 | 0 | 74 |
| A8 | 18.64 | 310.3 | 0.5 | 71 |
| A9 | 20.12 | 342.5 | 0 | 86 |
| A10 | 18.32 | 259.5 | 6.6 | 58 |
>TRINITY_DN118217_c0_g1_i5 from sample A3 / Example spliced isoformGGATAATAAAGATTAAAATATGATGGGGGTTTCGTGGCCTTCGAAACCCTTTCAAACGAACTGCTTCATGTATGCACATCCTGCCGGGGAAACCGTTTCCTCTTCTGCGCGTTTACACTGTCCCTATGTCCATGTCAACGGATCGATTTCACGGGGTGCCGCAACCCCTTCATTTTCAATTGCTCAAGCACTAGGATCTG
AGATTGATACTAGTATGCATGCTGGATGTTTTTCTACTGTCTTGTTTCTTGAATATACTGGTGCGCGCGTAAAACCGGCATTTAAAATAATTGTACTACTGGTGGACTGGACGGTTGGAGGCATTCTTGTTTCAACGAAATTCACCAAGCGGGCGTGGAATTTCCATTTCTTGCCCGGCTTTCTTTCATGGTCAATTTGC
CGGAGATTGGCTCTCTGCAAAATCACTCATTGAAAAACAGCTTTCTTAATCTATTACAAGGCAGAGGAGTAATTATATGGATTCGGTTCCTGCTTCATCCCTGTCTACGGCTCCCGACCATGTCTCGAGTGCAAATCACAAACCCTTTGTACCGAACATTCCCCGCAAGAATAATAAGAAGAGGCGGAGAATGCGTGGAG
TTATCACAGATCATGTCCCCAGTAATCAGTCCAATTTCACTTGGCATCGGCAGCAAAACCTACCTGTACATGATACTACTACAGCTGAATTGGATGATACTCGGGCCAAAGGACACCTTCGCTCCAAGGTGGAAGGCACCTCAAGAAATGGCAGACAGTTTAATGGTCCAAGCGGGAGTTATTCATATCCTCATCACGAC
AGCTTCCAGTCTCAGCGAGACAGCTGCTACAGATTATGGCAGCAGTTGGATGCAGCTTATGATGCCAGAGAACGGCATCTTTCAATGAAGGAGGAGGATCTTGCTAGGCGAGAACAGGCCGTTCGAACTCAGGAACAACTTATTACACACTGGACGGCACAGGCACAAGCTGAAAGAATGGAAGTTGCTTATATCAGGCA
GCAAGCAATAAAGCTGAAAGAGCAGGTGGATGCAGAAAGGTGCAAATTGGAAGCGGAGAAGGTAGCAAATGAATCAGGTGAAAATGTGGATAAAATCTCTGAAAGAGGCCGAACTTTGCATGATAAGATGGATCTATCACAAGTGGATCATCATCACCCTGAGATAGAAGGCCATTCAGGGGAAGATACCAATATGGGAG
AGATGCCACAAAACTGCCACAATACCATGGAGAATCATGCAGGTGAAAGTTTTGAGGCTATGAGAGGCTCCTCTCAAGGTTGCGTTGATACTTCTAAGACCAAATTGGACATTTCTGTGAAAGCATCTGAATGTTTGATGGAAACCATTGAATTGTGTGAATTTTCATCTTCTAAAGTGACAAGTTATCTTTCTGAGAAA
GGAAATGATCCTGTGCAACAACACAGAGTTTCAAATGAGATTGTGAATAGGGCTCTGGAAAGTCCTGCCATATTTGCTAGTAATAGAGCAGTTATAGGAGATTCAGAAGATTTTCCTTCAAAACCAGATAAAGTTGATGTTTGTAAGGAGGTTGTAAGCAGTGCCAATGATAAGGAATCTTCATTGGAGGCATCAAGTCA
GAGTAAAGATGGCAACATGTGTCAGCTTTCTGCAGGCCAGTCTTTGTTATGTGCTTATAAGTTGAAGCCTGAAGAAATTGAAGTTCACTTAAATAATACAGAGAGATCACTGCCCACACCTAGATTTGCAACTTTTCCCATCAAGTTGAAGGTTGAGAATGTTGAACATGAGAGAGAAACTCCACTTATACCTGTAAGGG
GCAATTTTCCTAACATTTCTTTGCCGACACTAAAAGTTAAGAGTGAAGCATTTGAAGACTGTCAAAGTGATGAACTAGACCATATTTCACTTCAATTGAGGCAGAATCTCAGCAAAACAATGCTTGCTGACATGGAATTAAAGATAGACATTTCGAAAGGAGAATGTGATTCTGAGGAAGTCCAGAAGCCCAAAGAAAGA
AAATTTTCCATCAAGCGAAATAAGAAAAAGACAAAAATATGTTCTGTCGAAACTGCTCTGGAGGAAGATGCCCCTGGACTTTTACAGGTTTTACGTGAAAAAGGTATTATGGATGATATCAAGCTTTATGGTGACTTGGTGAACAGAGATTTGTTAGGGTTTGCCGCTGAAGAAGATAATTTCAAATAACTTGAAAACGT
CATTGATAAGGTCAATTTATTGGATTCTTAATGATGTTGTGATGCTTCTAGTGTTGGCAAAGTTGAAAGCTGTCAGAAAATGGCTACAATCCATGTATGAAACAACATTTGCTGCATTCTGGTTTCAACTTTCTTTGTTTGTGCATATTAAGATGAGTTACTGTGAGCTTATTTGAACTCTTTTCACTGTAGAAAGATTT
CAGGAAGCCTATTGTGATATAAATGCTTCATTTCTTTTCTTCTCTAAGACTAACATCACTTGAAAACTGTTTTGTTCAATTTTGTTATCTCTGCATGGAATTGGGGACCGTGTTCTATTTTTTCTAGCTTTAATGTGAAGCCTACGAGAATGATTTGTGTCGCCTTCACTAATATTGGGGGAGACGTTTGGCAATTTTAT
GGAATTTATTTCAGCTATGGGGACGGCCTACTGGTTTGCTTAAGATGGGTCGCACACGACAGATAGGGGCTAACAAGCCTACATATTGCTTGACTTGTCTTCTTTCGTTGATTGAACAGACCCGATCTTTACAGCTGCGCAAGTGGCCTGTTGAATGGGGTTGGTGTCGACAGCTTCAGTCATTCATATTTGTATTTGAG
AGACATAATAGAATAGTCTTGGAGCGTCCAGAATATGGTTATGCCACATACTTCTTTGAGCTGGTGCAATCTCTGCCAATCAAGTGGCAGGTGGGACGATTGGTCACAGTGATGAGTGTTGCCATCTGTAGCAGAACTGCTCTTCTTGAAAACAAGCCTCTGGAGATTGGTGAGGACCTGACTTCAGAGGAAGCAAGCAT
CCTAGAAGATTACGGATGGACTCCAAATAGTGGGTTTGGCTCTTTGCTGAACTACTGTGATCGGGTTGTACATGATAGGAAGGTTGATAACGATGACATGGAATGGAGATCGAAAATAGGGAAGCTGCTGATGGATGGTCATTCTCATGGTAGTATCTCAATAACTAATATTCCAAAAAAGCTCCAATACGTTGTTCCAA
CTGTTAAGTATGAGAAATAACGATATCTCAAACCTTCAGGCTAGGAGATACCTCGTGTCATATCGAAAGGTCACCCTGACCTTATACAATAATTGAAGGGGCACATGGCTGCATAACTGTGATGCAATACCTGATTATATTATACTTGATGTATAACTTGTACTATTAGAAGATTGCCAAATAGCAACCACTGAAGATGA
TTGGTGCGATCCAACTGTTCTATCTCAAATTTATCTTCTTTTACTCATGTTTTGATGTTACGTGTTACACGGTGACATGTTACTCATTTTACAGTGGTTTATTAAATGCTGTGTAACATTTGTCAGTATCCACAAAATGTTTGTGCAAATTGTATCTGTACAAGTTCATTGATTGGCGCGTCCTATATCAGCAAAAAATT
AAG
>TRINITY_DN118217_c0_g1_i15 from sample A3 / Example unspliced isoform:GCCTGTTGAATGGGGTTGGTGTCCACAGCTTCAGTCATTCATATTTGCATTTGAGAGACATAATAGgtgatcttatttatttttggacatcttttaccttaaaatactgctttttctattattttatgttcgcattttaaatatctaattcatatctctatagtgcagAATAGTCTTGGAGCGTCCAGAATATGGTTATG
CCACATACTTCTTTGAGCTGGTGCAATCTCTGCCAATCAAGTGGCAGGTGGGACGATTGGTCACAGTGATGAGTGTTGCCATCTGTAGCAGAACTGCTCTTCTTGAAAACAAGCCTCTGGAGATTGGTGAGGACCTGACTTCAGAGGAAGCAAGCATCCTAGAAGATTACGGATGGACTCCAAATAGTGGGTTTGGCTCT
TTGCTGAACTACTGTGATCGGGTTGTACATGATAGGAAGGTTGATAACGATGACATGGAATGGAGATCGAAAATAGGGAAGCTGCTGATGGATGGTCATTCTCATGGTAGTATCTCAATAACTAATATTCCAAAAAAGCTCCAATACGTTGTTCCAACTGTTAAGTATGAGAAATAACGATATCTCAAACCTTCAGGCTA
GGAGATACCTCGTGTCATATCGAAAGGTCACCCTGACCTTATACAATAATTGAAGGGGCACATGGCTGCATAACTGTGATGCAATACCTGATTATATTATACTTGATGTATAACTTGTACTATTAGAAGATTGCCAAATAGCAACCACTGAAGATGATTGGTGCGATCCAACTGTTCTATCTCAAATTTATCTTCTTTTA
CTCATGTTTTGATGTTACGTGTTACACGGTGACATGTTACTCATTTTACAGTGGTTTATTAAATGCTGTGTAACATTTGTCAGTATCCACAAAATGTTTGTGCAAATTGTATCTGTACAAGTTCATTGATTGGCGCGTCCTATATCAGCAAAAAATTAAG