sp|Q9SK71|RIN13_ARATH ----> RPM1 interacting protein 13
Intron 1 GTTAGTAGAA ... TCATTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 74.47 | 6 | 15 | 20 |
| A2 | 39.62 | 16 | 14 | 7 |
| A3 | 55 | 9 | 5 | 17 |
| A4 | 68 | 8 | 19 | 15 |
| A5 | 61.29 | 6 | 13 | 6 |
| A6 | 0 | 1 | 0 | 0 |
| A7 | 56.16 | 16 | 23 | 18 |
| A8 | 41.18 | 5 | 6 | 1 |
| A9 | 70.73 | 6 | 12 | 17 |
| A10 | 84.21 | 3 | 14 | 18 |
>TRINITY_DN114131_c0_g1_i4 from sample A1 / Example spliced isoformGTTCTGTGAAAAACGTCCAAAACATCCCTGACAGATCCCAAGGCAAAACATCCCCTGTAGGAACGTTCTGTGAAAAACATCCAAACTGATGGAGGTTGGAAATTACGAACATGGGATGCAATTTGTCATGCGGTAAAATGGAGGTAGGAAACTCCATATGGCATTATTAAGGGTTTTTGATGGAATCCCTGAAAGATCCC
AAGACAAAACAGGGAATCGGCTATGGCTTGACCAACCATTTCTAAAGAAGGCCGAGAGCATATTCTTGAAAGCCTATGCCCACAAACGCGTAGCTCTAGACTTCTATTTCTAAACAACATTGACGAAAGATTGAGAAGCTCCCCTACCTCTCATGCAAAACACAACGTAACTGTTAGTTAATTAAAGGCCTGGTAGCGGT
CAGCCAGGAAAGCTTGAAGACGAAGAAATGCAAGACATGAAATCCAGCTTAATTTCTTATTTTAATCCGCAAACCAAATTACGCTTGGGGAGGATAAAGTTAAAAAGGAAGAAATCAGTTCAAGACTAAGAAAATCCATTTGGGTGCTTTTGAATTTGGGTTCAAGTTGAATTGAAGGTTCAGAGGACATTGAAGTCCAT
GCTCGTTGAGTTTGATATTCATGTTCACTCTCTTAAACCATTGATCGTCCATGCTGCGCCATACCCATGATTATTTGTATGTAAGGTCTACTGTAACTCGTGGTTTAGAAGCCAGGAGGACTTCCTGCGAAGGATATTTGGGACCAGTTTATGCACATGTTTTGTATAGTTTTACCCGAATTTTGAGCATTCAGAGGCTC
ATTTACAGCTGGGTTTTGGGTAGTCTCTACTAAAGAATTCAGACAGTGGAGCTTATGCTTGAGACCTCATATTATTAGCACCAGAGCCAAGACTCTGAATTAGGGATGGTTTCGGTGATCAATGTGCTTGAAATTAGCTCAGACGAGGAGGGAGAAGGAGATGAAATGGATTCTGAATGTGGCAATCCCCCCAAAAGGCT
TCTAGACTCTTCAAGGGCTTCTGATACTGCTGTTGATGATGATTGCGAGGTGACAATTACAGAGAAACCTCCTGACTTTATTCAGCCAGCCAGAAAGAGAGGAAAGATTGTCCACGGCATTAGTTCACTGAATGATGAATGCTGCATATTGGATTGTAATCCAGAGAAGATTGTTTCTGTGTCAGAGACCTTTGGCAATG
ACTCAGAGGAGTTGGCGGTAACCGCAGAACGCGGCCATGTTGCATGTAGGGACTATCCTCATTCAAGGCATTGTTGTGTAAGATATCCTTTCAACAGCACACCTCATGAGAAACATTGTGCCATGTGTCATTGCTATGTATGTGACAAGCCTGCCCCATGTTTGATATGGGGCCAAGGAAATTTTACTGGTGATCACTGC
CATGCTTCAGACAAAGAAGAGAAATGGAGGAATTTAAGGCATTCCTACAACCTGAAGAAAACCCAGATGCTATTACCACCCACCATTGATGTCGTACCTCTATTATCTAGTGGGAGATCTACAGTTCAGATCCTGCCTCTTCACGAGGGCCTTTTTCTTCTGTTGCTCTATCCTGTCATTTGACTGGCCAGCGTAGAGGC
ATTCTTGCAGGCTCCATGAGTTCCATAGATCCAGCTGGAAGAAGTAATAGAATTGGTAGAAAAGAAGTCACATCTACATTGTCAATTAGTAGTCATGGTGGTGTGCATCACTTCAGGCCCTGCTCATCTACAGAACATCTGAATACCAACTTTCAGATTGCAATAACTGGCCATAGTACCAGCATGCATGCAAGTTCTAC
GAGATCTCGTTTTTCTACAAGCAATCAGAACCTTGCCCCCGAGACAGGACCTGCATCTATGCATAGTTTGTGCAGTTGCATGCCTGGCCAGTTGGCAAGGATCCATCAGAGTGGAAGCATACAGACTAACTCCATGAGTGCTACAGTTCAGCCTGGTAGACATAACCCAGTGGGTAGAGAGGAAATTGCATCTGTTTCAC
TGAATATTAACCATGGTGCTGCATTTCAATCAGGGTGTTACTCATCTACAAACAATCTAAATCGTATCTTTGAGACAGGCCCTCCATCTACCTCTGATTTACATGGTTATTTTCCTAGCCATAATGCAAATATTGGCCAGAGTGGAAGCATGCATGGAATCTCCACATGTTACCCAGGTCAGGCTGGCAGGAGGAATCCA
ATGTGTTTAGAACCAGTTACATCTGTTCTGTCAGATACTGGCCATGTTTCTGGGCATCAATCCATGCCTTGCTCATCCAAAAACAATCTAAATCCTGCCTTTCAGCCAGGAATGGTCCCTACTTTAGGTTTGCAAGCTCATTTCCCTGGAAAGATTGAAAGGATTGGGCAAAGTGGAACCAGGCTTGCAAGCTCCGTGAA
TTCCACAGGTCAGGTTGGTAGCAGTCAACAAGTAGGTCCCATTGCATCTGTTCCAACAGACATTAGCCAAGGTTATGCACAACAAATCAAATCTTCTCCTTTTACAAACAATCTGAATCCCGCCTTTAGTGCAATGCCTCTCTCTGCATTTGATTTATCTTCTCATTTACTTCTCCCGAATGCAATGATTGACCAGGGTC
AAAGCATGTTTGCAAACTCCATGATTTCCACTTGTCAGGTGGGTGGAAGTGATCATGTTGGTATGGGAACTGTTGCATGTATTCCGTTGAATGTCAGCCATAGTTGTGCAGATCAGTTCAGACCATCTTCATTTACAAATAATCTGAACCCTCCACCTCAGACACAACCTACAAATCAATTCAGGTCATCTTCATTTACA
CACAATCTGAACTCGAACCCTCCCCCTCAGATACAACCCCCCTTTACTTTTGGTTTGTCTTCTCATCTGCATGGACAGACTGAAATTATAATTGCAAGCTCCACCAGTTCAATTGATCAGGTTGGCACAAGTTGTGACACCAGTACTGATGCAGCTGCAACAGTTTCATTGTATAATGGATGTAGCTCTGTGCATCCTGT
AGGATCCATCCAAGAAGAGTCTTGTTCATCTATGGAAAACCTGCACTGTGCATCTTGTACAAATCTTGTATCTTCTTTTAGCATGGCCACTCATCTTCCAGGTCAGATTGGAAGCATGCATGTAGGTTCCACACTAAGGGACATACCGCAATTGTACATAAATGGCCCCAGTATCATGGCTACAGAATTTCAAGGAAACA
AAATAAGTTCTTTAGAAAGCAACTCGATGGAGACAACAGAACCTTTGAAGATGATGTTGTCAAGCAACGATGCACAAACTACCTTGGAGACTTGTTCAGCAACTCAGAAAGTTAATCAGTCTGCTGATGTGGGAGATTCTACTGATGCGCTCTCAAGGAATGGTACTTCAGTTCAGAATGTTATGCATGGAGAACAACTC
AGTTGGCTACTAGAATTTCTGCTAGACGATGATTTGAGTATCCAGGATAGTTTATTTACAGATCCATGATTGTCTTGAACAATATGGCTTTCCAGAGGTGCAGCCTATGATTCAAGCCAGTTCTTCTGAACAGGTATTTTCATGTGACTCATCCGCATATGTGCCTCAAGTAGCATCACATATTCATATTTCTGGTGATG
TGTCTACTGTTCCGAGTATTTCTATTCAGTTCTCTGCTGTTGAGAAGATGCTGGTCACTTCACCAGTTCTAAGTAGAAATACAGACTAGTGCACATTTCCAAGCCTATCAGAGTTCCACTTATTACTTATTCCATGATGCAAGTAACCCGTGCATTGATCTTGATGATTGTAGGCATATGTTTGTTGTAAGTAGGTAGAG
AATTAAATTGTCAGCATTGAATGGATAATGCCATGCCTACCCAACATATTTTCTTTACGAAAGAGTAAGTTTTTAAACTCATAAAGCAGCACACATGAAAAATCTGCAAGACATAGTATATGAATTTCCTACCAAAATACAAGTCCTATTCAAGTGACCAAGCACTAAAGTTGATGAGACTGACGTATGCTTGCAAAGCA
GTTGTCAACCTCAGAATCATTGTTTGGCATAGGAAGTTTTGAACCTTCTAAGCATCATTCCATCTTTTATGCATGGTTTGATTGTTGATCAGAGTGACATAATAATCAAAGTATGATAATCTGC
>TRINITY_DN114131_c0_g1_i3 from sample A1 / Example unspliced isoform:GTTCTGTGAAAAACGTCCAAAACATCCCTGACAGATCCCAAGGCAAAACATCCCCTGTAGGAACGTTCTGTGAAAAACATCCAAACTGATGGAGGTTGGAAATTACGAACATGGGATGCAATTTGTCATGCGGTAAAATGGAGGTAGGAAACTCCATATGGCATTATTAAGGGTTTTTGATGGAATCCCTGAAAGATCCC
AAGACAAAACAGGGAATCGGCTATGGCTTGACCAACCATTTCTAAAGAAGGCCGAGAGCATATTCTTGAAAGCCTATGCCCACAAACGCGTAGCTCTAGACTTCTATTTCTAAACAACATTGACGAAAGATTGAGAAGCTCCCCTACCTCTCATGCAAAACACAACGTAACTGTTAGTTAATTAAAGGCCTGGTAGCGGT
CAGCCAGGAAAGCTTGAAGACGAAGAAATGCAAGACATGAAATCCAGCTTAATTTCTTATTTTAATCCGCAAACCAAATTACGCTTGGGGAGGATAAAGTTAAAAAGGAAGAAATCAGTTCAAGACTAAGAAAATCCATTTGGGTGCTTTTGAATTTGGGTTCAAGTTGAATTGAAGGTTCAGAGGACATTGAAGTCCAT
GCTCGTTGAGTTTGATATTCATGTTCACTCTCTTAAACCATTGATCGTCCATGCTGCGCCATACCCATGATTATTTGTATGTAAGGTCTACTGTAACTCGTGGTTTAGAAGCCAGGAGGACTTCCTGCGAAGGATATTTGGGACCAGTTTATGCACATGTTTTGTATAGTTTTACCCGAATTTTGAGCATTCAGAGGCTC
ATTTACAGCTGGGTTTTGGGTAGTCTCTACTAAAGAATTCAGACAGTGGAGCTTATGCTTGAGACCTCATATTATTAGCACCAGAGCCAAGACTCTGAATTAGGGATGGTTTCGGTGATCAATGTGCTTGAAATTAGCTCAGACGAGGAGGGAGAAGGAGATGAAATGGATTCTGAATGTGGCAATCCCCCCAAAAGGCT
TCTAGACTCTTCAAGGGCTTCTGATACTGCTGTTGATGATGATTGCGAGGTGACAATTACAGAGAAACCTCCTGACTTTATTCAGCCAGCCAGAAAGAGAGGAAAGATTGTCCACGGCATTAGTTCACTGAATGATGAATGCTGCATATTGGATTGTAATCCAGAGAAGATTGTTTCTGTGTCAGAGACCTTTGGCAATG
ACTCAGAGGAGTTGGCGGTAACCGCAGAACGCGGCCATGTATGGTTTCATTCTGTGTTTCATTGCTCTACTTGTAATTGAAGAATGTATAAGGTTGCATGTAGGGACTATCCTCATTCAAGGCATTGTTGTGTAAGATATCCTTTCAACAGCACACCTCATGAGAAACATTGTGCCATGTGTCATTGCTATGTATGTGAC
AAGCCTGCCCCATGTTTGATATGGGGCCAAGGAAATTTTACTGGTGATCACTGCCATGCTTCAGACAAAGAAGAGAAATGGAGGAATTTAAGGCATTCCTACAACCTGAAGAAAACCCAGATGCTATTACCACCCACCATTGATGTCGTACCTCTATTATCTAGTGGGAGATCTACAGTTCAGgttagtagaagtaatca
agaggatgcagatacagttacaaagattccctcaaatatttaccagaatgcagcaagtcaattaaggccttcttcatttgcagATCCTGCCTCTTCACGAGGGCCTTTTTCTTCTGTTGCTCTATCCTGTCATTTGACTGGCCAGCGTAGAGGCATTCTTGCAGGCTCCATGAGTTCCATAGATCCAGCTGGAAGAAGTA
ATAGAATTGGTAGAAAAGAAGTCACATCTACATTGTCAATTAGTAGTCATGGTGGTGTGCATCACTTCAGGCCCTGCTCATCTACAGAACATCTGAATACCAACTTTCAGATTGCAATAACTGGCCATAGTACCAGCATGCATGCAAGTTCTACGAGATCTCGTTTTTCTACAAGCAATCAGAACCTTGCCCCCGAGACA
GGACCTGCATCTATGCATAGTTTGTGCAGTTGCATGCCTGGCCAGTTGGCAAGGATCCATCAGAGTGGAAGCATACAGACTAACTCCATGAGTGCTACAGTTCAGCCTGGTAGACATAACCCAGTGGGTAGAGAGGAAATTGCATCTGTTTCACTGAATATTAACCATGGTGCTGCATTTCAATCAGGGTGTTACTCATC
TACAAACAATCTAAATCGTATCTTTGAGACAGGCCCTCCATCTACCTCTGATTTACATGGTTATTTTCCTAGCCATAATGCAAATATTGGCCAGAGTGGAAGCATGCATGGAATCTCCACATGTTACCCAGGTCAGGCTGGCAGGAGGAATCCAATGTGTTTAGAACCAGTTACATCTGTTCTGTCAGATACTGGCCATG
TTTCTGGGCATCAATCCATGCCTTGCTCATCCAAAAACAATCTAAATCCTGCCTTTCAGCCAGGAATGGTCCCTACTTTAGGTTTGCAAGCTCATTTCCCTGGAAAGATTGAAAGGATTGGGCAAAGTGGAACCAGGCTTGCAAGCTCCGTGAATTCCACAGGTCAGGTTGGTAGCAGTCAACAAGTAGGTCCCATTGCA
TCTGTTCCAACAGACATTAGCCAAGGTTATGCACAACAAATCAAATCTTCTCCTTTTACAAACAATCTGAATCCCGCCTTTAGTGCAATGCCTCTCTCTGCATTTGATTTATCTTCTCATTTACTTCTCCCGAATGCAATGATTGACCAGGGTCAAAGCATGTTTGCAAACTCCATGATTTCCACTTGTCAGGTGGGTGG
AAGTGATCATGTTGGTATGGGAACTGTTGCATGTATTCCGTTGAATGTCAGCCATAGTTGTGCAGATCAGTTCAGACCATCTTCATTTACAAATAATCTGAACCCTCCACCTCAGACACAACCTACAAATCAATTCAGGTCATCTTCATTTACACACAATCTGAACTCGAACCCTCCCCCTCAGATACAACCCCCCTTTA
CTTTTGGTTTGTCTTCTCATCTGCATGGACAGACTGAAATTATAATTGCAAGCTCCACCAGTTCAATTGATCAGGTTGGCACAAGTTGTGACACCAGTACTGATGCAGCTGCAACAGTTTCATTGTATAATGGATGTAGCTCTGTGCATCCTGTAGGATCCATCCAAGAAGAGTCTTGTTCATCTATGGAAAACCTGCAC
TGTGCATCTTGTACAAATCTTGTATCTTCTTTTAGCATGGCCACTCATCTTCCAGGTCAGATTGGAAGCATGCATGTAGGTTCCACACTAAGGGACATACCGCAATTGTACATAAATGGCCCCAGTATCATGGCTACAGAATTTCAAGGAAACAAAATAAGTTCTTTAGAAAGCAACTCGATGGAGACAACAGAACCTTT
GAAGATGATGTTGTCAAGCAACGATGCACAAACTACCTTGGAGACTTGTTCAGCAACTCAGAAAGTTAATCAGTCTGCTGATGTGGGAGATTCTACTGATGCGCTCTCAAGGAATGGTACTTCAGTTCAGAATGTTATGCATGGAGAACAACTCAGTTGGCTACTAGAATTTCTGCTAGACGATGATTTGAGTATCCAGG
ATAGTTTATTTACAGATCCATGATTGTCTTGAACAATATGGCTTTCCAGAGGTGCAGCCTATGATTCAAGCCAGTTCTTCTGAACAGGTATTTTCATGTGACTCATCCGCATATGTGCCTCAAGTAGCATCACATATTCATATTTCTGGTGATGTGTCTACTGTTCCGAGTATTTCTATTCAGTTCTCTGCTGTTGAGAA
GATGCTGGTCACTTCACCAGTTCTAAGTAGAAATACAGACTAGTGCACATTTCCAAGCCTATCAGAGTTCCACTTATTACTTATTCCATGATGCAAGTAACCCGTGCATTGATCTTGATGATTGTAGGCATATGTTTGTTGTAAGTAGGTAGAGAATTAAATTGTCAGCATTGAATGGATAATGCCATGCCTACCCAACA
TATTTTCTTTACGAAAGAGTAAGTTTTTAAACTCATAAAGCAGCACACATGAAAAATCTGCAAGACATAGTATATGAATTTCCTACCAAAATACAAGTCCTATTCAAGTGACCAAGCACTAAAGTTGATGAGACTGACGTATGCTTGCAAAGCAGTTGTCAACCTCAGAATCATTGTTTGGCATAGGAAGTTTTGAACCT
TCTAAGCATCATTCCATCTTTTATGCATGGTTTGATTGTTGATCAGAGTGACATAATAATCAAAGTATGATAATCTGC
Intron 2 GTATGGTTTC ... AATGTATAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 31.25 | 33 | 19 | 11 |
| A2 | 21.57 | 20 | 9 | 2 |
| A3 | 28.57 | 15 | 6 | 6 |
| A4 | 23.68 | 29 | 8 | 10 |
| A5 | 20 | 20 | 5 | 5 |
| A6 | 61.54 | 5 | 8 | 8 |
| A7 | 30.3 | 23 | 14 | 6 |
| A8 | 67.74 | 5 | 12 | 9 |
| A9 | 57.38 | 13 | 23 | 12 |
| A10 | 27.27 | 20 | 10 | 5 |
>TRINITY_DN114131_c0_g1_i5 from sample A1 / Example spliced isoformGTTCTGTGAAAAACGTCCAAAACATCCCTGACAGATCCCAAGGCAAAACATCCCCTGTAGGAACGTTCTGTGAAAAACATCCAAACTGATGGAGGTTGGAAATTACGAACATGGGATGCAATTTGTCATGCGGTAAAATGGAGGTAGGAAACTCCATATGGCATTATTAAGGGTTTTTGATGGAATCCCTGAAAGATCCC
AAGACAAAACAGGGAATCGGCTATGGCTTGACCAACCATTTCTAAAGAAGGCCGAGAGCATATTCTTGAAAGCCTATGCCCACAAACGCGTAGCTCTAGACTTCTATTTCTAAACAACATTGACGAAAGATTGAGAAGCTCCCCTACCTCTCATGCAAAACACAACGTAACTGTTAGTTAATTAAAGGCCTGGTAGCGGT
CAGCCAGGAAAGCTTGAAGACGAAGAAATGCAAGACATGAAATCCAGCTTAATTTCTTATTTTAATCCGCAAACCAAATTACGCTTGGGGAGGATAAAGTTAAAAAGGAAGAAATCAGTTCAAGACTAAGAAAATCCATTTGGGTGCTTTTGAATTTGGGTTCAAGTTGAATTGAAGGTTCAGAGGACATTGAAGTCCAT
GCTCGTTGAGTTTGATATTCATGTTCACTCTCTTAAACCATTGATCGTCCATGCTGCGCCATACCCATGATTATTTGTATGTAAGGTCTACTGTAACTCGTGGTTTAGAAGCCAGGAGGACTTCCTGCGAAGGATATTTGGGACCAGTTTATGCACATGTTTTGTATAGTTTTACCCGAATTTTGAGCATTCAGAGGCTC
ATTTACAGCTGGGTTTTGGGTAGTCTCTACTAAAGAATTCAGACAGTGGAGCTTATGCTTGAGACCTCATATTATTAGCACCAGAGCCAAGACTCTGAATTAGGGATGGTTTCGGTGATCAATGTGCTTGAAATTAGCTCAGACGAGGAGGGAGAAGGAGATGAAATGGATTCTGAATGTGGCAATCCCCCCAAAAGGCT
TCTAGACTCTTCAAGGGCTTCTGATACTGCTGTTGATGATGATTGCGAGGTGACAATTACAGAGAAACCTCCTGACTTTATTCAGCCAGCCAGAAAGAGAGGAAAGATTGTCCACGGCATTAGTTCACTGAATGATGAATGCTGCATATTGGATTGTAATCCAGAGAAGATTGTTTCTGTGTCAGAGACCTTTGGCAATG
ACTCAGAGGAGTTGGCGGTAACCGCAGAACGCGGCCATGTTGCATGTAGGGACTATCCTCATTCAAGGCATTGTTGTGTAAGATATCCTTTCAACAGCACACCTCATGAGAAACATTGTGCCATGTGTCATTGCTATGTATGTGACAAGCCTGCCCCATGTTTGATATGGGGCCAAGGAAATTTTACTGGTGATCACTGC
CATGCTTCAGACAAAGAAGAGAAATGGAGGAATTTAAGGCATTCCTACAACCTGAAGAAAACCCAGATGCTATTACCACCCACCATTGATGTCGTACCTCTATTATCTAGTGGGAGATCTACAGTTCAGGTTAGTAGAAGTAATCAAGAGGATGCAGATACAGTTACAAAGATTCCCTCAAATATTTACCAGAATGCAGC
AAGTCAATTAAGGCCTTCTTCATTTGCAGATCCTGCCTCTTCACGAGGGCCTTTTTCTTCTGTTGCTCTATCCTGTCATTTGACTGGCCAGCGTAGAGGCATTCTTGCAGGCTCCATGAGTTCCATAGATCCAGCTGGAAGAAGTAATAGAATTGGTAGAAAAGAAGTCACATCTACATTGTCAATTAGTAGTCATGGTG
GTGTGCATCACTTCAGGCCCTGCTCATCTACAGAACATCTGAATACCAACTTTCAGATTGCAATAACTGGCCATAGTACCAGCATGCATGCAAGTTCTACGAGATCTCGTTTTTCTACAAGCAATCAGAACCTTGCCCCCGAGACAGGACCTGCATCTATGCATAGTTTGTGCAGTTGCATGCCTGGCCAGTTGGCAAGG
ATCCATCAGAGTGGAAGCATACAGACTAACTCCATGAGTGCTACAGTTCAGCCTGGTAGACATAACCCAGTGGGTAGAGAGGAAATTGCATCTGTTTCACTGAATATTAACCATGGTGCTGCATTTCAATCAGGGTGTTACTCATCTACAAACAATCTAAATCGTATCTTTGAGACAGGCCCTCCATCTACCTCTGATTT
ACATGGTTATTTTCCTAGCCATAATGCAAATATTGGCCAGAGTGGAAGCATGCATGGAATCTCCACATGTTACCCAGGTCAGGCTGGCAGGAGGAATCCAATGTGTTTAGAACCAGTTACATCTGTTCTGTCAGATACTGGCCATGTTTCTGGGCATCAATCCATGCCTTGCTCATCCAAAAACAATCTAAATCCTGCCT
TTCAGCCAGGAATGGTCCCTACTTTAGGTTTGCAAGCTCATTTCCCTGGAAAGATTGAAAGGATTGGGCAAAGTGGAACCAGGCTTGCAAGCTCCGTGAATTCCACAGGTCAGGTTGGTAGCAGTCAACAAGTAGGTCCCATTGCATCTGTTCCAACAGACATTAGCCAAGGTTATGCACAACAAATCAAATCTTCTCCT
TTTACAAACAATCTGAATCCCGCCTTTAGTGCAATGCCTCTCTCTGCATTTGATTTATCTTCTCATTTACTTCTCCCGAATGCAATGATTGACCAGGGTCAAAGCATGTTTGCAAACTCCATGATTTCCACTTGTCAGGTGGGTGGAAGTGATCATGTTGGTATGGGAACTGTTGCATGTATTCCGTTGAATGTCAGCCA
TAGTTGTGCAGATCAGTTCAGACCATCTTCATTTACAAATAATCTGAACCCTCCACCTCAGACACAACCTACAAATCAATTCAGGTCATCTTCATTTACACACAATCTGAACTCGAACCCTCCCCCTCAGATACAACCCCCCTTTACTTTTGGTTTGTCTTCTCATCTGCATGGACAGACTGAAATTATAATTGCAAGCT
CCACCAGTTCAATTGATCAGGTTGGCACAAGTTGTGACACCAGTACTGATGCAGCTGCAACAGTTTCATTGTATAATGGATGTAGCTCTGTGCATCCTGTAGGATCCATCCAAGAAGAGTCTTGTTCATCTATGGAAAACCTGCACTGTGCATCTTGTACAAATCTTGTATCTTCTTTTAGCATGGCCACTCATCTTCCA
GGTCAGATTGGAAGCATGCATGTAGGTTCCACACTAAGGGACATACCGCAATTGTACATAAATGGCCCCAGTATCATGGCTACAGAATTTCAAGGAAACAAAATAAGTTCTTTAGAAAGCAACTCGATGGAGACAACAGAACCTTTGAAGATGATGTTGTCAAGCAACGATGCACAAACTACCTTGGAGACTTGTTCAGC
AACTCAGAAAGTTAATCAGTCTGCTGATGTGGGAGATTCTACTGATGCGCTCTCAAGGAATGGTACTTCAGTTCAGAATGTTATGCATGGAGAACAACTCAGTTGGCTACTAGAATTTCTGCTAGACGATGATTTGAGTATCCAGGATAGTTTATTTACAGATCCATGATTGTCTTGAACAATATGGCTTTCCAGAGGTG
CAGCCTATGATTCAAGCCAGTTCTTCTGAACAGGTATTTTCATGTGACTCATCCGCATATGTGCCTCAAGTAGCATCACATATTCATATTTCTGGTGATGTGTCTACTGTTCCGAGTATTTCTATTCAGTTCTCTGCTGTTGAGAAGATGCTGGTCACTTCACCAGTTCTAAGTAGAAATACAGACTAGTGCACATTTCC
AAGCCTATCAGAGTTCCACTTATTACTTATTCCATGATGCAAGTAACCCGTGCATTGATCTTGATGATTGTAGGCATATGTTTGTTGTAAGTAGGTAGAGAATTAAATTGTCAGCATTGAATGGATAATGCCATGCCTACCCAACATATTTTCTTTACGAAAGAGTAAGTTTTTAAACTCATAAAGCAGCACACATGAAA
AATCTGCAAGACATAGTATATGAATTTCCTACCAAAATACAAGTCCTATTCAAGTGACCAAGCACTAAAGTTGATGAGACTGACGTATGCTTGCAAAGCAGTTGTCAACCTCAGAATCATTGTTTGGCATAGGAAGTTTTGAACCTTCTAAGCATCATTCCATCTTTTATGCATGGTTTGATTGTTGATCAGAGTGACAT
AATAATCAAAGTATGATAATCTGC
>TRINITY_DN114131_c0_g1_i3 from sample A1 / Example unspliced isoform:GTTCTGTGAAAAACGTCCAAAACATCCCTGACAGATCCCAAGGCAAAACATCCCCTGTAGGAACGTTCTGTGAAAAACATCCAAACTGATGGAGGTTGGAAATTACGAACATGGGATGCAATTTGTCATGCGGTAAAATGGAGGTAGGAAACTCCATATGGCATTATTAAGGGTTTTTGATGGAATCCCTGAAAGATCCC
AAGACAAAACAGGGAATCGGCTATGGCTTGACCAACCATTTCTAAAGAAGGCCGAGAGCATATTCTTGAAAGCCTATGCCCACAAACGCGTAGCTCTAGACTTCTATTTCTAAACAACATTGACGAAAGATTGAGAAGCTCCCCTACCTCTCATGCAAAACACAACGTAACTGTTAGTTAATTAAAGGCCTGGTAGCGGT
CAGCCAGGAAAGCTTGAAGACGAAGAAATGCAAGACATGAAATCCAGCTTAATTTCTTATTTTAATCCGCAAACCAAATTACGCTTGGGGAGGATAAAGTTAAAAAGGAAGAAATCAGTTCAAGACTAAGAAAATCCATTTGGGTGCTTTTGAATTTGGGTTCAAGTTGAATTGAAGGTTCAGAGGACATTGAAGTCCAT
GCTCGTTGAGTTTGATATTCATGTTCACTCTCTTAAACCATTGATCGTCCATGCTGCGCCATACCCATGATTATTTGTATGTAAGGTCTACTGTAACTCGTGGTTTAGAAGCCAGGAGGACTTCCTGCGAAGGATATTTGGGACCAGTTTATGCACATGTTTTGTATAGTTTTACCCGAATTTTGAGCATTCAGAGGCTC
ATTTACAGCTGGGTTTTGGGTAGTCTCTACTAAAGAATTCAGACAGTGGAGCTTATGCTTGAGACCTCATATTATTAGCACCAGAGCCAAGACTCTGAATTAGGGATGGTTTCGGTGATCAATGTGCTTGAAATTAGCTCAGACGAGGAGGGAGAAGGAGATGAAATGGATTCTGAATGTGGCAATCCCCCCAAAAGGCT
TCTAGACTCTTCAAGGGCTTCTGATACTGCTGTTGATGATGATTGCGAGGTGACAATTACAGAGAAACCTCCTGACTTTATTCAGCCAGCCAGAAAGAGAGGAAAGATTGTCCACGGCATTAGTTCACTGAATGATGAATGCTGCATATTGGATTGTAATCCAGAGAAGATTGTTTCTGTGTCAGAGACCTTTGGCAATG
ACTCAGAGGAGTTGGCGGTAACCGCAGAACGCGGCCATgtatggtttcattctgtgtttcattgctctacttgtaattgaagaatgtataagGTTGCATGTAGGGACTATCCTCATTCAAGGCATTGTTGTGTAAGATATCCTTTCAACAGCACACCTCATGAGAAACATTGTGCCATGTGTCATTGCTATGTATGTGAC
AAGCCTGCCCCATGTTTGATATGGGGCCAAGGAAATTTTACTGGTGATCACTGCCATGCTTCAGACAAAGAAGAGAAATGGAGGAATTTAAGGCATTCCTACAACCTGAAGAAAACCCAGATGCTATTACCACCCACCATTGATGTCGTACCTCTATTATCTAGTGGGAGATCTACAGTTCAGGTTAGTAGAAGTAATCA
AGAGGATGCAGATACAGTTACAAAGATTCCCTCAAATATTTACCAGAATGCAGCAAGTCAATTAAGGCCTTCTTCATTTGCAGATCCTGCCTCTTCACGAGGGCCTTTTTCTTCTGTTGCTCTATCCTGTCATTTGACTGGCCAGCGTAGAGGCATTCTTGCAGGCTCCATGAGTTCCATAGATCCAGCTGGAAGAAGTA
ATAGAATTGGTAGAAAAGAAGTCACATCTACATTGTCAATTAGTAGTCATGGTGGTGTGCATCACTTCAGGCCCTGCTCATCTACAGAACATCTGAATACCAACTTTCAGATTGCAATAACTGGCCATAGTACCAGCATGCATGCAAGTTCTACGAGATCTCGTTTTTCTACAAGCAATCAGAACCTTGCCCCCGAGACA
GGACCTGCATCTATGCATAGTTTGTGCAGTTGCATGCCTGGCCAGTTGGCAAGGATCCATCAGAGTGGAAGCATACAGACTAACTCCATGAGTGCTACAGTTCAGCCTGGTAGACATAACCCAGTGGGTAGAGAGGAAATTGCATCTGTTTCACTGAATATTAACCATGGTGCTGCATTTCAATCAGGGTGTTACTCATC
TACAAACAATCTAAATCGTATCTTTGAGACAGGCCCTCCATCTACCTCTGATTTACATGGTTATTTTCCTAGCCATAATGCAAATATTGGCCAGAGTGGAAGCATGCATGGAATCTCCACATGTTACCCAGGTCAGGCTGGCAGGAGGAATCCAATGTGTTTAGAACCAGTTACATCTGTTCTGTCAGATACTGGCCATG
TTTCTGGGCATCAATCCATGCCTTGCTCATCCAAAAACAATCTAAATCCTGCCTTTCAGCCAGGAATGGTCCCTACTTTAGGTTTGCAAGCTCATTTCCCTGGAAAGATTGAAAGGATTGGGCAAAGTGGAACCAGGCTTGCAAGCTCCGTGAATTCCACAGGTCAGGTTGGTAGCAGTCAACAAGTAGGTCCCATTGCA
TCTGTTCCAACAGACATTAGCCAAGGTTATGCACAACAAATCAAATCTTCTCCTTTTACAAACAATCTGAATCCCGCCTTTAGTGCAATGCCTCTCTCTGCATTTGATTTATCTTCTCATTTACTTCTCCCGAATGCAATGATTGACCAGGGTCAAAGCATGTTTGCAAACTCCATGATTTCCACTTGTCAGGTGGGTGG
AAGTGATCATGTTGGTATGGGAACTGTTGCATGTATTCCGTTGAATGTCAGCCATAGTTGTGCAGATCAGTTCAGACCATCTTCATTTACAAATAATCTGAACCCTCCACCTCAGACACAACCTACAAATCAATTCAGGTCATCTTCATTTACACACAATCTGAACTCGAACCCTCCCCCTCAGATACAACCCCCCTTTA
CTTTTGGTTTGTCTTCTCATCTGCATGGACAGACTGAAATTATAATTGCAAGCTCCACCAGTTCAATTGATCAGGTTGGCACAAGTTGTGACACCAGTACTGATGCAGCTGCAACAGTTTCATTGTATAATGGATGTAGCTCTGTGCATCCTGTAGGATCCATCCAAGAAGAGTCTTGTTCATCTATGGAAAACCTGCAC
TGTGCATCTTGTACAAATCTTGTATCTTCTTTTAGCATGGCCACTCATCTTCCAGGTCAGATTGGAAGCATGCATGTAGGTTCCACACTAAGGGACATACCGCAATTGTACATAAATGGCCCCAGTATCATGGCTACAGAATTTCAAGGAAACAAAATAAGTTCTTTAGAAAGCAACTCGATGGAGACAACAGAACCTTT
GAAGATGATGTTGTCAAGCAACGATGCACAAACTACCTTGGAGACTTGTTCAGCAACTCAGAAAGTTAATCAGTCTGCTGATGTGGGAGATTCTACTGATGCGCTCTCAAGGAATGGTACTTCAGTTCAGAATGTTATGCATGGAGAACAACTCAGTTGGCTACTAGAATTTCTGCTAGACGATGATTTGAGTATCCAGG
ATAGTTTATTTACAGATCCATGATTGTCTTGAACAATATGGCTTTCCAGAGGTGCAGCCTATGATTCAAGCCAGTTCTTCTGAACAGGTATTTTCATGTGACTCATCCGCATATGTGCCTCAAGTAGCATCACATATTCATATTTCTGGTGATGTGTCTACTGTTCCGAGTATTTCTATTCAGTTCTCTGCTGTTGAGAA
GATGCTGGTCACTTCACCAGTTCTAAGTAGAAATACAGACTAGTGCACATTTCCAAGCCTATCAGAGTTCCACTTATTACTTATTCCATGATGCAAGTAACCCGTGCATTGATCTTGATGATTGTAGGCATATGTTTGTTGTAAGTAGGTAGAGAATTAAATTGTCAGCATTGAATGGATAATGCCATGCCTACCCAACA
TATTTTCTTTACGAAAGAGTAAGTTTTTAAACTCATAAAGCAGCACACATGAAAAATCTGCAAGACATAGTATATGAATTTCCTACCAAAATACAAGTCCTATTCAAGTGACCAAGCACTAAAGTTGATGAGACTGACGTATGCTTGCAAAGCAGTTGTCAACCTCAGAATCATTGTTTGGCATAGGAAGTTTTGAACCT
TCTAAGCATCATTCCATCTTTTATGCATGGTTTGATTGTTGATCAGAGTGACATAATAATCAAAGTATGATAATCTGC
Intron 3 GTATGGTCTA ... TATTCTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 12 | 22 | 4 | 3 |
| A2 | 26.67 | 22 | 0 | 8 |
| A3 | 15.38 | 44 | 2 | 8 |
| A4 | 9.52 | 19 | 0 | 2 |
| A5 | 28 | 18 | 0 | 7 |
| A6 | 0 | 5 | 0 | 0 |
| A7 | 5.88 | 16 | 0 | 1 |
| A8 | 33.33 | 6 | 0 | 3 |
| A9 | 23.81 | 16 | 0 | 5 |
| A10 | 6.67 | 28 | 0 | 2 |
>TRINITY_DN114131_c0_g1_i5 from sample A1 / Example spliced isoformGTTCTGTGAAAAACGTCCAAAACATCCCTGACAGATCCCAAGGCAAAACATCCCCTGTAGGAACGTTCTGTGAAAAACATCCAAACTGATGGAGGTTGGAAATTACGAACATGGGATGCAATTTGTCATGCGGTAAAATGGAGGTAGGAAACTCCATATGGCATTATTAAGGGTTTTTGATGGAATCCCTGAAAGATCCC
AAGACAAAACAGGGAATCGGCTATGGCTTGACCAACCATTTCTAAAGAAGGCCGAGAGCATATTCTTGAAAGCCTATGCCCACAAACGCGTAGCTCTAGACTTCTATTTCTAAACAACATTGACGAAAGATTGAGAAGCTCCCCTACCTCTCATGCAAAACACAACGTAACTGTTAGTTAATTAAAGGCCTGGTAGCGGT
CAGCCAGGAAAGCTTGAAGACGAAGAAATGCAAGACATGAAATCCAGCTTAATTTCTTATTTTAATCCGCAAACCAAATTACGCTTGGGGAGGATAAAGTTAAAAAGGAAGAAATCAGTTCAAGACTAAGAAAATCCATTTGGGTGCTTTTGAATTTGGGTTCAAGTTGAATTGAAGGTTCAGAGGACATTGAAGTCCAT
GCTCGTTGAGTTTGATATTCATGTTCACTCTCTTAAACCATTGATCGTCCATGCTGCGCCATACCCATGATTATTTGTATGTAAGGTCTACTGTAACTCGTGGTTTAGAAGCCAGGAGGACTTCCTGCGAAGGATATTTGGGACCAGTTTATGCACATGTTTTGTATAGTTTTACCCGAATTTTGAGCATTCAGAGGCTC
ATTTACAGCTGGGTTTTGGGTAGTCTCTACTAAAGAATTCAGACAGTGGAGCTTATGCTTGAGACCTCATATTATTAGCACCAGAGCCAAGACTCTGAATTAGGGATGGTTTCGGTGATCAATGTGCTTGAAATTAGCTCAGACGAGGAGGGAGAAGGAGATGAAATGGATTCTGAATGTGGCAATCCCCCCAAAAGGCT
TCTAGACTCTTCAAGGGCTTCTGATACTGCTGTTGATGATGATTGCGAGGTGACAATTACAGAGAAACCTCCTGACTTTATTCAGCCAGCCAGAAAGAGAGGAAAGATTGTCCACGGCATTAGTTCACTGAATGATGAATGCTGCATATTGGATTGTAATCCAGAGAAGATTGTTTCTGTGTCAGAGACCTTTGGCAATG
ACTCAGAGGAGTTGGCGGTAACCGCAGAACGCGGCCATGTTGCATGTAGGGACTATCCTCATTCAAGGCATTGTTGTGTAAGATATCCTTTCAACAGCACACCTCATGAGAAACATTGTGCCATGTGTCATTGCTATGTATGTGACAAGCCTGCCCCATGTTTGATATGGGGCCAAGGAAATTTTACTGGTGATCACTGC
CATGCTTCAGACAAAGAAGAGAAATGGAGGAATTTAAGGCATTCCTACAACCTGAAGAAAACCCAGATGCTATTACCACCCACCATTGATGTCGTACCTCTATTATCTAGTGGGAGATCTACAGTTCAGGTTAGTAGAAGTAATCAAGAGGATGCAGATACAGTTACAAAGATTCCCTCAAATATTTACCAGAATGCAGC
AAGTCAATTAAGGCCTTCTTCATTTGCAGATCCTGCCTCTTCACGAGGGCCTTTTTCTTCTGTTGCTCTATCCTGTCATTTGACTGGCCAGCGTAGAGGCATTCTTGCAGGCTCCATGAGTTCCATAGATCCAGCTGGAAGAAGTAATAGAATTGGTAGAAAAGAAGTCACATCTACATTGTCAATTAGTAGTCATGGTG
GTGTGCATCACTTCAGGCCCTGCTCATCTACAGAACATCTGAATACCAACTTTCAGATTGCAATAACTGGCCATAGTACCAGCATGCATGCAAGTTCTACGAGATCTCGTTTTTCTACAAGCAATCAGAACCTTGCCCCCGAGACAGGACCTGCATCTATGCATAGTTTGTGCAGTTGCATGCCTGGCCAGTTGGCAAGG
ATCCATCAGAGTGGAAGCATACAGACTAACTCCATGAGTGCTACAGTTCAGCCTGGTAGACATAACCCAGTGGGTAGAGAGGAAATTGCATCTGTTTCACTGAATATTAACCATGGTGCTGCATTTCAATCAGGGTGTTACTCATCTACAAACAATCTAAATCGTATCTTTGAGACAGGCCCTCCATCTACCTCTGATTT
ACATGGTTATTTTCCTAGCCATAATGCAAATATTGGCCAGAGTGGAAGCATGCATGGAATCTCCACATGTTACCCAGGTCAGGCTGGCAGGAGGAATCCAATGTGTTTAGAACCAGTTACATCTGTTCTGTCAGATACTGGCCATGTTTCTGGGCATCAATCCATGCCTTGCTCATCCAAAAACAATCTAAATCCTGCCT
TTCAGCCAGGAATGGTCCCTACTTTAGGTTTGCAAGCTCATTTCCCTGGAAAGATTGAAAGGATTGGGCAAAGTGGAACCAGGCTTGCAAGCTCCGTGAATTCCACAGGTCAGGTTGGTAGCAGTCAACAAGTAGGTCCCATTGCATCTGTTCCAACAGACATTAGCCAAGGTTATGCACAACAAATCAAATCTTCTCCT
TTTACAAACAATCTGAATCCCGCCTTTAGTGCAATGCCTCTCTCTGCATTTGATTTATCTTCTCATTTACTTCTCCCGAATGCAATGATTGACCAGGGTCAAAGCATGTTTGCAAACTCCATGATTTCCACTTGTCAGGTGGGTGGAAGTGATCATGTTGGTATGGGAACTGTTGCATGTATTCCGTTGAATGTCAGCCA
TAGTTGTGCAGATCAGTTCAGACCATCTTCATTTACAAATAATCTGAACCCTCCACCTCAGACACAACCTACAAATCAATTCAGGTCATCTTCATTTACACACAATCTGAACTCGAACCCTCCCCCTCAGATACAACCCCCCTTTACTTTTGGTTTGTCTTCTCATCTGCATGGACAGACTGAAATTATAATTGCAAGCT
CCACCAGTTCAATTGATCAGGTTGGCACAAGTTGTGACACCAGTACTGATGCAGCTGCAACAGTTTCATTGTATAATGGATGTAGCTCTGTGCATCCTGTAGGATCCATCCAAGAAGAGTCTTGTTCATCTATGGAAAACCTGCACTGTGCATCTTGTACAAATCTTGTATCTTCTTTTAGCATGGCCACTCATCTTCCA
GGTCAGATTGGAAGCATGCATGTAGGTTCCACACTAAGGGACATACCGCAATTGTACATAAATGGCCCCAGTATCATGGCTACAGAATTTCAAGGAAACAAAATAAGTTCTTTAGAAAGCAACTCGATGGAGACAACAGAACCTTTGAAGATGATGTTGTCAAGCAACGATGCACAAACTACCTTGGAGACTTGTTCAGC
AACTCAGAAAGTTAATCAGTCTGCTGATGTGGGAGATTCTACTGATGCGCTCTCAAGGAATGGTACTTCAGTTCAGAATGTTATGCATGGAGAACAACTCAGTTGGCTACTAGAATTTCTGCTAGACGATGATTTGAGTATCCAGGATAGTTTATTTACAGATCCATGATTGTCTTGAACAATATGGCTTTCCAGAGGTG
CAGCCTATGATTCAAGCCAGTTCTTCTGAACAGGTATTTTCATGTGACTCATCCGCATATGTGCCTCAAGTAGCATCACATATTCATATTTCTGGTGATGTGTCTACTGTTCCGAGTATTTCTATTCAGTTCTCTGCTGTTGAGAAGATGCTGGTCACTTCACCAGTTCTAAGTAGAAATACAGACTAGTGCACATTTCC
AAGCCTATCAGAGTTCCACTTATTACTTATTCCATGATGCAAGTAACCCGTGCATTGATCTTGATGATTGTAGGCATATGTTTGTTGTAAGTAGGTAGAGAATTAAATTGTCAGCATTGAATGGATAATGCCATGCCTACCCAACATATTTTCTTTACGAAAGAGTAAGTTTTTAAACTCATAAAGCAGCACACATGAAA
AATCTGCAAGACATAGTATATGAATTTCCTACCAAAATACAAGTCCTATTCAAGTGACCAAGCACTAAAGTTGATGAGACTGACGTATGCTTGCAAAGCAGTTGTCAACCTCAGAATCATTGTTTGGCATAGGAAGTTTTGAACCTTCTAAGCATCATTCCATCTTTTATGCATGGTTTGATTGTTGATCAGAGTGACAT
AATAATCAAAGTATGATAATCTGC
>TRINITY_DN114131_c0_g1_i2 from sample A1 / Example unspliced isoform:CCATGATTATTTGTATGTAAGgtatggtctatactgctgtaaatttttgaatctcaagtttacacggtaaaactgcatgccatcttcaaatatcatatttgggtacccagttaatcaattcagaagcatgcattgtacgcactctcaaactaatttattctacagGTCTACTGTAACTCGTGGTTTAGAAGCCAGGAGGA
CTTCCTGCGAAGGATATTTGGGACCAGTTTATGCACATGTTTTGTATAGTTTTACCCGAATTTTGAGCATTCAGAGGCTCATTTACAGCTGGGTTTTGGGTAGTCTCTACTAAAGAATTCAGACAGTGGAGCTTATGCTTGAGACCTCATATTATTAGCACCAGAGCCAAGACTCTGAATTAGGGATGGTTTCGGTGATC
AATGTGCTTGAAATTAGCTCAGACGAGGAGGGAGAAGGAGATGAAATGGATTCTGAATGTGGCAATCCCCCCAAAAGGCTTCTAGACTCTTCAAGGGCTTCTGATACTGCTGTTGATGATGATTGCGAGGTGACAATTACAGAGAAACCTCCTGACTTTATTCAGCCAGCCAGAAAGAGAGGAAAGATTGTCCACGGCAT
TAGTTCACTGAATGATGAATGCTGCATATTGGATTGTAATCCAGAGAAGATTGTTTCTGTGTCAGAGACCTTTGGCAATGACTCAGAGGAGTTGGCGGTAACCGCAGAACGCGGCCATGTTGCATGTAGGGACTATCCTCATTCAAGGCATTGTTGTGTAAGATATCCTTTCAACAGCACACCTCATGAGAAACATTGTG
CCATGTGTCATTGCTATGTATGTGACAAGCCTGCCCCATGTTTGATATGGGGCCAAGGAAATTTTACTGGTGATCACTGCCATGCTTCAGACAAAGAAGAGAAATGGAGGAATTTAAGGCATTCCTACAACCTGAAGAAAACCCAGATGCTATTACCACCCACCATTGATGTCGTACCTCTATTATCTAGTGGGAGATCT
ACAGTTCAGGTTAGTAGAAGTAATCAAGAGGATGCAGATACAGTTACAAAGATTCCCTCAAATATTTACCAGAATGCAGCAAGTCAATTAAGGCCTTCTTCATTTGCAGATCCTGCCTCTTCACGAGGGCCTTTTTCTTCTGTTGCTCTATCCTGTCATTTGACTGGCCAGCGTAGAGGCATTCTTGCAGGCTCCATGAG
TTCCATAGATCCAGCTGGAAGAAGTAATAGAATTGGTAGAAAAGAAGTCACATCTACATTGTCAATTAGTAGTCATGGTGGTGTGCATCACTTCAGGCCCTGCTCATCTACAGAACATCTGAATACCAACTTTCAGATTGCAATAACTGGCCATAGTACCAGCATGCATGCAAGTTCTACGAGATCTCGTTTTTCTACAA
GCAATCAGAACCTTGCCCCCGAGACAGGACCTGCATCTATGCATAGTTTGTGCAGTTGCATGCCTGGCCAGTTGGCAAGGATCCATCAGAGTGGAAGCATACAGACTAACTCCATGAGTGCTACAGTTCAGCCTGGTAGACATAACCCAGTGGGTAGAGAGGAAATTGCATCTGTTTCACTGAATATTAACCATGGTGCT
GCATTTCAATCAGGGTGTTACTCATCTACAAACAATCTAAATCGTATCTTTGAGACAGGCCCTCCATCTACCTCTGATTTACATGGTTATTTTCCTAGCCATAATGCAAATATTGGCCAGAGTGGAAGCATGCATGGAATCTCCACATGTTACCCAGGTCAGGCTGGCAGGAGGAATCCAATGTGTTTAGAACCAGTTAC
ATCTGTTCTGTCAGATACTGGCCATGTTTCTGGGCATCAATCCATGCCTTGCTCATCCAAAAACAATCTAAATCCTGCCTTTCAGCCAGGAATGGTCCCTACTTTAGGTTTGCAAGCTCATTTCCCTGGAAAGATTGAAAGGATTGGGCAAAGTGGAACCAGGCTTGCAAGCTCCGTGAATTCCACAGGTCAGGTTGGTA
GCAGTCAACAAGTAGGTCCCATTGCATCTGTTCCAACAGACATTAGCCAAGGTTATGCACAACAAATCAAATCTTCTCCTTTTACAAACAATCTGAATCCCGCCTTTAGTGCAATGCCTCTCTCTGCATTTGATTTATCTTCTCATTTACTTCTCCCGAATGCAATGATTGACCAGGGTCAAAGCATGTTTGCAAACTCC
ATGATTTCCACTTGTCAGGTGGGTGGAAGTGATCATGTTGGTATGGGAACTGTTGCATGTATTCCGTTGAATGTCAGCCATAGTTGTGCAGATCAGTTCAGACCATCTTCATTTACAAATAATCTGAACCCTCCACCTCAGACACAACCTACAAATCAATTCAGGTCATCTTCATTTACACACAATCTGAACTCGAACCC
TCCCCCTCAGATACAACCCCCCTTTACTTTTGGTTTGTCTTCTCATCTGCATGGACAGACTGAAATTATAATTGCAAGCTCCACCAGTTCAATTGATCAGGTTGGCACAAGTTGTGACACCAGTACTGATGCAGCTGCAACAGTTTCATTGTATAATGGATGTAGCTCTGTGCATCCTGTAGGATCCATCCAAGAAGAGT
CTTGTTCATCTATGGAAAACCTGCACTGTGCATCTTGTACAAATCTTGTATCTTCTTTTAGCATGGCCACTCATCTTCCAGGTCAGATTGGAAGCATGCATGTAGGTTCCACACTAAGGGACATACCGCAATTGTACATAAATGGCCCCAGTATCATGGCTACAGAATTTCAAGGAAACAAAATAAGTTCTTTAGAAAGC
AACTCGATGGAGACAACAGAACCTTTGAAGATGATGTTGTCAAGCAACGATGCACAAACTACCTTGGAGACTTGTTCAGCAACTCAGAAAGTTAATCAGTCTGCTGATGTGGGAGATTCTACTGATGCGCTCTCAAGGAATGGTACTTCAGTTCAGAATGTTATGCATGGAGAACAACTCAGTTGGCTACTAGAATTTCT
GCTAGACGATGATTTGAGTATCCAGGATAGTTTATTTACAGATCCATGATTGTCTTGAACAATATGGCTTTCCAGAGGTGCAGCCTATGATTCAAGCCAGTTCTTCTGAACAGGTATTTTCATGTGACTCATCCGCATATGTGCCTCAAGTAGCATCACATATTCATATTTCTGGTGATGTGTCTACTGTTCCGAGTATT
TCTATTCAGTTCTCTGCTGTTGAGAAGATGCTGGTCACTTCACCAGTTCTAAGTAGAAATACAGACTAGTGCACATTTCCAAGCCTATCAGAGTTCCACTTATTACTTATTCCATGATGCAAGTAACCCGTGCATTGATCTTGATGATTGTAGGCATATGTTTGTTGTAAGTAGGTAGAGAATTAAATTGTCAGCATTGA
ATGGATAATGCCATGCCTACCCAACATATTTTCTTTACGAAAGAGTAAGTTTTTAAACTCATAAAGCAGCACACATGAAAAATCTGCAAGACATAGTATATGAATTTCCTACCAAAATACAAGTCCTATTCAAGTGACCAAGCACTAAAGTTGATGAGACTGACGTATGCTTGCAAAGCAGTTGTCAACCTCAGAATCAT
TGTTTGGCATAGGAAGTTTTGAACCTTCTAAGCATCATTCCATCTTTTATGCATGGTTTGATTGTTGATCAGAGTGACATAATAATCAAAGTATGATAATCTGC
Intron 4 GTGCTGCATT ... ATTAGCCAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 62.79 | 16 | 24 | 30 |
| A2 | 75.51 | 6 | 22 | 15 |
| A3 | 49.37 | 20 | 19 | 20 |
| A4 | 49.15 | 15 | 19 | 10 |
| A5 | 100 | 0 | 6 | 3 |
| A6 | 76.47 | 2 | 9 | 4 |
| A7 | 64.04 | 16 | 20 | 37 |
| A8 | 60 | 9 | 12 | 15 |
| A9 | 58.21 | 14 | 18 | 21 |
| A10 | 75 | 6 | 22 | 14 |
>TRINITY_DN45594_c0_g2_i9 from sample A7 / Example spliced isoformGGGACATATTTCAAGAAGAATAGTCATTTCATATCTACGTTAATATAAATCCCATCTTGATTGTGATAGGAACGTTCTGTGAAAAACGTCCAAAACATCCCTGACAGATCCCAAGGCAAAACATCCCCTGTAGGAACGTTCTGTGAAAAACATCCAAACTGATGGAGGTTGGAAATTACGAACATGGGATGCAATTTGTC
ATGCGGTAAAATGGAGGTAGGAAACTCCATATGGCATTATTAAGGGTTTTTGATGGAATCCCTGAAAGATCCCAAGACAAAACAGGGAATCGGCTATGGCTTGACCAACCATTTCTAAAGAAGGCCGAGAGCATATTCTTGAAAGCCTATGCCCACAAACGCGTAGCTCTAGACTTCTATTTCTAAACAACATTGACGAA
AGATTGAGAAGCTCCCCTACCTCTCATGCAAAACACAACGTAACTGTTAGTTAATTAAAGGCCTGGTAGCGGTCAGCCAGGAAAGCTTGAAGACGAAGAAATGCAAGACATGAAATCCAGCTTAATTTCTTATTTTAATCCGCAAACCAAATTACGCTTGGGGAGGATAAAGTTAAAAAGGAAGAAATCAGTTCAAGACT
AAGAAAATCCATTTGGGTGCTTTTGAATTTGGGTTCAAGTTGAATTGAAGGTTCAGAGGACATTGAAGTCCATGCTCGTTGAGTTTGATATTCATGTTCACTCTCTTAAACCATTGATCGTCCATGCTGCGCCATACCCATGATTATTTGTATGTAAGGTCTACTGTAACTCGTGGTTTAGAAGCCAGGAGGACTTCCTG
CGAAGGATATTTGGGACCAGTTTATGCACATGTTTTGTATAGTTTTACCCGAATTTTGAGCATTCAGAGGCTCATTTACAGCTGGGTTTTGGGTAGTCTCTACTAAAGAATTCAGACAGTGGAGCTTATGCTTGAGACCTCATATTATTAGCACCAGAGCCAAGACTCTGAATTAGGGATGGTTTCGGTGATCAATGTGC
TTGAAATTAGCTCAGACGAGGAGGGAGAAGGAGATGAAATGGATTCTGAATGTGGCAATCCCCCCAAAAGGCTTCTAGACTCTTCAAGGGCTTCTGATACTGCTGTTGATGATGATTGCGAGGTGACAATTACAGAGAAACCTCCTGACTTTATTCAGCCAGCCAGAAAGAGAGGAAAGATTGTCCACGGCATTAGTTCA
CTGAATGATGAATGCTGCATATTGGATTGTAATCCAGAGAAGATTGTTTCTGTGTCAGAGACCTTTGGCAATGACTCAGAGGAGTTGGCGGTAACCGCAGAACGCGGCCATGTTGCATGTAGGGACTATCCTCATTCAAGGCATTGTTGTGTAAGATATCCTTTCAACAGCACACCTCATGAGAAACATTGTGCCATGTG
TCATTGCTATGTATGTGACAAGCCTGCCCCATGTTTGATATGGGGCCAAGGAAATTTTACTGGTGATCACTGCCATGCTTCAGACAAAGAAGAGAAATGGAGGAATTTAAGGCATTCCTACAACCTGAAGAAAACCCAGATGCTATTACCACCCACCATTGATGTCGTACCTCTATTATCTAGTGGGAGATCTACAGTTC
AGGTTAGTAGAAGTAATCAAGAGGATGCAGATACAGTTACAAAGATTCCCTCAAATATTTACCAGAATGCAGCAAGTCAATTAAGGCCTTCTTCATTTGCAGATCCTGCCTCTTCACGAGGGCCTTTTTCTTCTGTTGCTCTATCCTGTCATTTGACTGGCCAGCGTAGAGGCATTCTTGCAGGCTCCATGAGTTCCATA
GATCCAGCTGGAAGAAGTAATAGAATTGGTAGAAAAGAAGTCACATCTACATTGTCAATTAGTAGTCATGGTGGTGTGCATCACTTCAGGCCCTGCTCATCTACAGAACATCTGAATACCAACTTTCAGATTGCAATAACTGGCCATAGTACCAGCATGCATGCAAGTTCTACGAGATCTCGTTTTTCTACAAGCAATCA
GAACCTTGCCCCCGAGACAGGACCTGCATCTATGCATAGTTTGTGCAGTTGCATGCCTGGCCAGTTGGCAAGGATCCATCAGAGTGGAAGCATACAGACTAACTCCATGAGTGCTACAGTTCAGCCTGGTAGACATAACCCAGTGGGTAGAGAGGAAATTGCATCTGTTTCACTGAATATTAACCATGGTTATGCACAAC
AAATCAAATCTTCTCCTTTTACAAACAATCTGAATCCCGCCTTTAGTGCAATGCCTCTCTCTGCATTTGATTTATCTTCTCATTTACTTCTCCCGAATGCAATGATTGACCAGGGTCAAAGCATGTTTGCAAACTCCATGATTTCCACTTGTCAGGTGGGTGGAAGTGATCATGTTGGTATGGGAACTGTTGCATGTATT
CCGTTGAATGTCAGCCATAGTTGTGCAGATCAGTTCAGACCATCTTCATTTACAAATAATCTGAACCCTCCACCTCAGACACAACCTACAAATCAATTCAGGTCATCTTCATTTACACACAATCTGAACTCGAACCCTCCCCCTCAGATACAACCCCCCTTTACTTTTGGTTTGTCTTCTCATCTGCATGGACAGACTGA
AATTATAATTGCAAGCTCCACCAGTTCAATTGATCAGGTTGGCACAAGTTGTGACACCAGTACTGATGCAGCTGCAACAGTTTCATTGTATAATGGATGTAGCTCTGTGCATCCTGTAGGATCCATCCAAGAAGAGTCTTGTTCATCTATGGAAAACCTGCACTGTGCATCTTGTACAAATCTTGTATCTTCTTTTAGCA
TGGCCACTCATCTTCCAGGTCAGATTGGAAGCATGCATGTAGGTTCCACACTAAGGGACATACCGCAATTGTACATAAATGGCCCCAGTATCATGGCTACAGAATTTCAAGGAAACAAAATAAGTTCTTTAGAAAGCAACTCGATGGAGACAACAGAACCTTTGAAGATGATGTTGTCAAGCAACGATGCACAAACTACC
TTGGAGACTTGTTCAGCAACTCAGAAAGTTAATCAGTCTGCTGATGTGGGAGATTCTACTGATGCCCTCTCAAGGAATGGTACTTCAGTTCAGAATGTTATGCATGGAGAACAACTCAGTTGGCTACTAGAATTTCTGCTAGACGATGATTTGAGTATCCAGGATAGTTTATTTACAGATCCATGATTGTCTTGAACAAT
ATGGCTTTCCAGAGGTGCAGCCTATGATTCAAGCCAGTTCTTCTGAACAGGTATTTTCATGTGACTCATCCGCATATGTGCCTCAAGTAGCATCACATATTCATATTTCTGGTGATGTGTCTACTGTTCCGAGTATTTCTATTCAGTTCTCTGCTGTTGAGAAGATGCTGGTCACTTCACCAGTTCTAAGTAGAAATACA
GACTAGTGCACATTTCCAAGCCTATCAGAGTTCCACTTATTACTTATTCCATGATGCAAGTAACCCGTGCATTGATCTTGATGATTGTAGGCATATGTTTGTTGTAAGTAGGTAGAGAATTAAATTGTCAGCATTGAATGGATAATGCCATGCCTACCCAACATATTTTCTTTACGAAAGAGTAAGTTTTTAAACTCATA
AAGCAGCACACATGAAAAATCTGCAAGACATAGTATATGAATTTCCTACCAAAATACAAGTCCTATTCAAGTGACCAAGCACTAAAGTTGATGAGACTGACGTATGCTTGCAAAGCAGTTGTCAACCTCAGAATCATTGTTTGGCATAGGAAGTTTTGAACCTTCTAAGCATCATTCCATCTTTTATGCATGGTTTGATT
GTTGATCAGAGTGACATAATAATCAAAGTATGATAATCTGCAAAACGTTTTTAAACCTTGGAAGCATCATTTTGGACAGTGGCATGTTTTAAATCTGCCATTTGAGGCATCATTTTGTACTTATAATGCTTCGACATAAGAAACAAATGGAAAAAATTGATGTCAGGCCAGGTCATCATTGCAACTCTG
>TRINITY_DN45594_c0_g2_i5 from sample A7 / Example unspliced isoform:GGGACATATTTCAAGAAGAATAGTCATTTCATATCTACGTTAATATAAATCCCATCTTGATTGTGATAGGAACGTTCTGTGAAAAACGTCCAAAACATCCCTGACAGATCCCAAGGCAAAACATCCCCTGTAGGAACGTTCTGTGAAAAACATCCAAACTGATGGAGGTTGGAAATTACGAACATGGGATGCAATTTGTC
ATGCGGTAAAATGGAGGTAGGAAACTCCATATGGCATTATTAAGGGTTTTTGATGGAATCCCTGAAAGATCCCAAGACAAAACAGGGAATCGGCTATGGCTTGACCAACCATTTCTAAAGAAGGCCGAGAGCATATTCTTGAAAGCCTATGCCCACAAACGCGTAGCTCTAGACTTCTATTTCTAAACAACATTGACGAA
AGATTGAGAAGCTCCCCTACCTCTCATGCAAAACACAACGTAACTGTTAGTTAATTAAAGGCCTGGTAGCGGTCAGCCAGGAAAGCTTGAAGACGAAGAAATGCAAGACATGAAATCCAGCTTAATTTCTTATTTTAATCCGCAAACCAAATTACGCTTGGGGAGGATAAAGTTAAAAAGGAAGAAATCAGTTCAAGACT
AAGAAAATCCATTTGGGTGCTTTTGAATTTGGGTTCAAGTTGAATTGAAGGTTCAGAGGACATTGAAGTCCATGCTCGTTGAGTTTGATATTCATGTTCACTCTCTTAAACCATTGATCGTCCATGCTGCGCCATACCCATGATTATTTGTATGTAAGGTCTACTGTAACTCGTGGTTTAGAAGCCAGGAGGACTTCCTG
CGAAGGATATTTGGGACCAGTTTATGCACATGTTTTGTATAGTTTTACCCGAATTTTGAGCATTCAGAGGCTCATTTACAGCTGGGTTTTGGGTAGTCTCTACTAAAGAATTCAGACAGTGGAGCTTATGCTTGAGACCTCATATTATTAGCACCAGAGCCAAGACTCTGAATTAGGGATGGTTTCGGTGATCAATGTGC
TTGAAATTAGCTCAGACGAGGAGGGAGAAGGAGATGAAATGGATTCTGAATGTGGCAATCCCCCCAAAAGGCTTCTAGACTCTTCAAGGGCTTCTGATACTGCTGTTGATGATGATTGCGAGGTGACAATTACAGAGAAACCTCCTGACTTTATTCAGCCAGCCAGAAAGAGAGGAAAGATTGTCCACGGCATTAGTTCA
CTGAATGATGAATGCTGCATATTGGATTGTAATCCAGAGAAGATTGTTTCTGTGTCAGAGACCTTTGGCAATGACTCAGAGGAGTTGGCGGTAACCGCAGAACGCGGCCATGTTGCATGTAGGGACTATCCTCATTCAAGGCATTGTTGTGTAAGATATCCTTTCAACAGCACACCTCATGAGAAACATTGTGCCATGTG
TCATTGCTATGTATGTGACAAGCCTGCCCCATGTTTGATATGGGGCCAAGGAAATTTTACTGGTGATCACTGCCATGCTTCAGACAAAGAAGAGAAATGGAGGAATTTAAGGCATTCCTACAACCTGAAGAAAACCCAGATGCTATTACCACCCACCATTGATGTCGTACCTCTATTATCTAGTGGGAGATCTACAGTTC
AGGTTAGTAGAAGTAATCAAGAGGATGCAGATACAGTTACAAAGATTCCCTCAAATATTTACCAGAATGCAGCAAGTCAATTAAGGCCTTCTTCATTTGCAGATCCTGCCTCTTCACGAGGGCCTTTTTCTTCTGTTGCTCTATCCTGTCATTTGACTGGCCAGCGTAGAGGCATTCTTGCAGGCTCCATGAGTTCCATA
GATCCAGCTGGAAGAAGTAATAGAATTGGTAGAAAAGAAGTCACATCTACATTGTCAATTAGTAGTCATGGTGGTGTGCATCACTTCAGGCCCTGCTCATCTACAGAACATCTGAATACCAACTTTCAGATTGCAATAACTGGCCATAGTACCAGCATGCATGCAAGTTCTACGAGATCTCGTTTTTCTACAAGCAATCA
GAACCTTGCCCCCGAGACAGGACCTGCATCTATGCATAGTTTGTGCAGTTGCATGCCTGGCCAGTTGGCAAGGATCCATCAGAGTGGAAGCATACAGACTAACTCCATGAGTGCTACAGTTCAGCCTGGTAGACATAACCCAGTGGGTAGAGAGGAAATTGCATCTGTTTCACTGAATATTAACCATGgtgctgcatttc
aatcagggtgttactcatctacaaacaatctaaatcgtatctttgagacaggccctccatctacctctgatttacatggttattttcctagccataatgcaaatattggccagagtggaagcatgcatggaatctccacatgttacccaggtcaggctggcaggaggaatccaatgtgtttagaaccagttacatctgtt
ctgtcagatactggccatgtttctgggcatcaatccatgccttgctcatccaaaaacaatctaaatcctgcctttcagccaggaatggtccctactttaggtttgcaagctcatttccctggaaagattgaaaggattgggcaaagtggaaccaggcttgcaagctccgtgaattccacaggtcaggttggtagcagtca
acaagtaggtcccattgcatctgttccaacagacattagccaagGTTATGCACAACAAATCAAATCTTCTCCTTTTACAAACAATCTGAATCCCGCCTTTAGTGCAATGCCTCTCTCTGCATTTGATTTATCTTCTCATTTACTTCTCCCGAATGCAATGATTGACCAGGGTCAAAGCATGTTTGCAAACTCCATGATTT
CCACTTGTCAGGTGGGTGGAAGTGATCATGTTGGTATGGGAACTGTTGCATGTATTCCGTTGAATGTCAGCCATAGTTGTGCAGATCAGTTCAGACCATCTTCATTTACAAATAATCTGAACCCTCCACCTCAGACACAACCTACAAATCAATTCAGGTCATCTTCATTTACACACAATCTGAACTCGAACCCTCCCCCT
CAGATACAACCCCCCTTTACTTTTGGTTTGTCTTCTCATCTGCATGGACAGACTGAAATTATAATTGCAAGCTCCACCAGTTCAATTGATCAGGTTGGCACAAGTTGTGACACCAGTACTGATGCAGCTGCAACAGTTTCATTGTATAATGGATGTAGCTCTGTGCATCCTGTAGGATCCATCCAAGAAGAGTCTTGTTC
ATCTATGGAAAACCTGCACTGTGCATCTTGTACAAATCTTGTATCTTCTTTTAGCATGGCCACTCATCTTCCAGGTCAGATTGGAAGCATGCATGTAGGTTCCACACTAAGGGACATACCGCAATTGTACATAAATGGCCCCAGTATCATGGCTACAGAATTTCAAGGAAACAAAATAAGTTCTTTAGAAAGCAACTCGA
TGGAGACAACAGAACCTTTGAAGATGATGTTGTCAAGCAACGATGCACAAACTACCTTGGAGACTTGTTCAGCAACTCAGAAAGTTAATCAGTCTGCTGATGTGGGAGATTCTACTGATGCCCTCTCAAGGAATGGTACTTCAGTTCAGAATGTTATGCATGGAGAACAACTCAGTTGGCTACTAGAATTTCTGCTAGAC
GATGATTTGAGTATCCAGGATAGTTTATTTACAGATCCATGATTGTCTTGAACAATATGGCTTTCCAGAGGTGCAGCCTATGATTCAAGCCAGTTCTTCTGAACAGGTATTTTCATGTGACTCATCCGCATATGTGCCTCAAGTAGCATCACATATTCATATTTCTGGTGATGTGTCTACTGTTCCGAGTATTTCTATTC
AGTTCTCTGCTGTTGAGAAGATGCTGGTCACTTCACCAGTTCTAAGTAGAAATACAGACTAGTGCACATTTCCAAGCCTATCAGAGTTCCACTTATTACTTATTCCATGATGCAAGTAACCCGTGCATTGATCTTGATGATTGTAGGCATATGTTTGTTGTAAGTAGGTAGAGAATTAAATTGTCAGCATTGAATGGATA
ATGCCATGCCTACCCAACATATTTTCTTTACGAAAGAGTAAGTTTTTAAACTCATAAAGCAGCACACATGAAAAATCTGCAAGACATAGTATATGAATTTCCTACCAAAATACAAGTCCTATTCAAGTGACCAAGCACTAAAGTTGATGAGACTGACGTATGCTTGCAAAGCAGTTGTCAACCTCAGAATCATTGTTTGG
CATAGGAAGTTTTGAACCTTCTAAGCATCATTCCATCTTTTATGCATGGTTTGATTGTTGATCAGAGTGACATAATAATCAAAGTATGATAATCTGCAAAACGTTTTTAAACCTTGGAAGCATCATTTTGGACAGTGGCATGTTTTAAATCTGCCATTTGAGGCATCATTTTGTACTTATAATGCTTCGACATAAGAAAC
AAATGGAAAAAATTGATGTCAGGCCAGGTCATCATTGCAACTCTG