sp|Q7F9I1|CLPC1_ORYSJ ----> Chaperone protein ClpC1, chloroplastic
Intron 1 GTATGCATTG ... TTGCATTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 16.54 | 535 | 0 | 106 |
| A2 | 12.66 | 421 | 0 | 61 |
| A3 | 15.65 | 566 | 0 | 105 |
| A4 | 17.51 | 278 | 0 | 59 |
| A5 | 15.38 | 187 | 0 | 34 |
| A6 | 15.5 | 169 | 0 | 31 |
| A7 | 15.65 | 528 | 0 | 98 |
| A8 | 16.04 | 157 | 0 | 30 |
| A9 | 11.69 | 529 | 0 | 70 |
| A10 | 14.03 | 613 | 0 | 100 |
>TRINITY_DN37518_c0_g1_i4 from sample A9 / Example spliced isoformATAAAATGTAAGTTCGATTGCAAAAGAAACGTCAGATATTATATCGATATGAGCCGTGAGACATTTGAGCATCCACGTCGTCCACAAATTCCAAATGCTATCTATCCCGTGCCTCTTAAATGTTAAACCATTAATCACATACAATCTGCCATATCTCCACTCCCATTGATTTCCTCACTGGGAAAAAAACTGCTGTCCAG
GAGGAGGAGGATCTTCATCTCAAGGCCCTGCAGTAGCAGAGTTCCATGTGACGGATTATAATCTGAAATCGCCTTTATCTGCAAGAGGGTTTTCTGTGGATCGAAGCCCTACATCAATCTACTGCATTTCCGGGACTCTTCCTGTATACTTTGCTTCAGGATTTCTTTACCTGATCAAGCAGATTAAGCAGGCTAATTGT
CTGGGTAAGATGGCTGGAGCACTAGCACAATCTGCAATTCTTCCTGGTAGAATAATCAGTACAAAGCATGGTCAAATTCAGAGCTCTAAAAGAGGAAAAGGAGTTCCAAAGATGATCCGTAAGGTGCATTCACGATCCTTTAGCATGCAAAGTTTCACTGGGTTGCGCCAAGCAACGTGCATAGATAAGGTTGGAAGGCC
TGTAAAAGATTTTCATGCAGCAGTAGCAGCCTCAATCTGTCTTCCAGTGGGGAAAGGCAATAGAGGTGTGGTTGTAGCTATGTTTGAGCGCTTTACTGAGAAGGCCATCAAGGTAATTATGCTTGCTCAAGAGGAAGCACGACGCCTTGGGCACAATTTTGTAGGTACAGAACAGATTCTCTTAGGTCTTATTGGTGAAG
GGACTGGTATTGCAGCAAAGGTCCTAAAATCCATGGGAATCAATCTCAAGGAGGCTCGTGTAGAGGTTGAGAAAATCATTGGTAGAGGCAGTGGGTTTGTTGCTGTGGAGATTCCATTCACTCCCAGAGCAAAGCGTGTGTTGGAACTTTCCCTTGAGGAAGCTCGACAACTTGGACACAACTACATAGGATCTGAGCAC
TTGCTTTTAGGTTTATTGCGGGAGGGTGAAGGCGTTGCAGCTCGTGTGCTTGAGAATCTTGGAGCTGACCCCAGCAATATTCGTACACAGGTAATTCGGATGGTTGGAGAAAGTACAGAAGCTGTTGGTGCTGGAGTTGGAGGTGGTAGCAGCAGCAACAAGATGCCGACTCTTGAGGAATATGGAACAAATTTGACGAA
ACTGGCAGAGGAGGGCAAGCTTGATCCAGTGGTTGGAAGGCAGCCACAAATAGAACGTGTGACTCAAATACTGGGACGTCGTACAAAAAATAACCCTTGTCTCATTGGTGAGCCTGGTGTAGGGAAAACAGCTATTGCTGAGGGACTTGCACAGCGAATAGCTTCTGGAGATGTTCCCGAGACAATCGAGGGTAAAAAGG
TCATTACTTTAGATATGGGGTTACTTGTGGCTGGTACTAAGTATCGTGGAGAGTTTGAAGAGAGATTGAAGAAGTTAATGGAGGAAATCAAACAGAGTGATGAGATTATACTCTTCATAGACGAAGTTCATACTTTGATTGGAGCAGGTGCAGCAGAAGGTGCAATTGATGCAGCCAATATTCTGAAACCATCTCTTGCA
CGAGGTGAACTGCAGTGTATTGGAGCCACCACCTTGGATGAATACAGAAAACACATTGAGAAGGACCCAGCGCTAGAGAGGAGATTCCAACCAGTGCAAGTGCCAGAGCCATCTGTTGATGAGACAATACAGATACTGAAAGGTTTACGTGAGCGATATGAGATTCATCACAAACTTCGTTATACTGATGAGGCTTTGGT
GGCTGCTGCAAAGTTGTCGTATCAATATATCAGTGATCGTTTTCTTCCTGACAAAGCAATTGATCTGATTGATGAGGCTGGTTCTCGAGTACGCCTTCGCCATGCACAGCTCCCTGAAGAAGCTAGAGAGCTCGACAAAGAACTCAGACAGATTACAAAAGAAAAGAATGAATCTGTTCGAAGCCAGGATTTTGAAAAGG
CTGGAGAACTACGTGATCGTGAGATGGAACTCAAGGCACAAATTTCAGCTTTAACAGAGAAAGGAAAAGAGAAATCAAAGGCTGAGAGTGAAGCAGGAGAGGCAAGTCCGTTAGTCACGGAGGTAGATATTCAGCAAATCGTATGTGCATGGACAGGCATTCCAGTTGAAAAGGTGTCAACAGACGAGTCTGACAAACTT
TTGAAAATGGAGGAAACACTCCACCAACGCATCATTGGGCAAGATGAGGCAGTTAAAGCTATTAGTCGAGCTATTCGCCGTGCAAGAGTTGGTTTGAAGAATCCAAACAGGCCAATTGCGAGCTTCATTTTCTCGGGTCCTACTGGTGTTGGCAAGTCGGAGCTTGCCAAGGCATTGGCTGCATACTATTTTGGTTCAGA
GGAGGCAATGATAAGGCTAGATATGAGTGAATTCATGGAAAGGCACACTGTTTCCAAGTTGATTGGTTCACCCCCGGGATATGTAGGCTACACTGAAGGAGGGCAACTAACTGAAGCTGTCAGGAGACGCCCTTATACGGTGGTCCTTTTCGATGAAATTGAAAAGGCTCATCCTGACGTCTTCAATATGATGCTTCAAA
TCCTAGAAGATGGAAGACTGACAGATAGCAAAGGCAGGACTGTGGACTTTAAGAATACGCTTTTGATCATGACTTCTAATGTTGGGAGTAGTGTGATTGAGAAGGGAGGCCGTGGAATTGGTTTCCAACTTGATTATGATGAGAAAGACAGTAGCTACACAAGGATCAAAAGCCTTGTCAATGAAGAGCTGAAGCAATAT
TTTCGACCTGAGTTCCTGAATCGACTAGATGAGATGATTGTGTTTAGACAGCTTACAAAGACAGAGGTGAAAGAGATTGCAGCTATAATGTTGAAAGAGGTCTTTGAACGGCTTAAAACAAAAGAAATTGATCTTCAAGTAACAGAGCGATTCACAGACCGAGTTGTAGATGAAGGTTATAGTCCCAGCTATGGTGCAAG
GCCACTCCGTCGGGCAATTATGCGGTTATTAGAGGATAGTCTGGCTGAAAGAATGCTTGCTGGTGAGATCAAAGAGGGCGATTCAGCTATTGTTGATGTTGATAGTGAAGGAAATGTTATTGTCTTGAATGGAAAGACTGGTACAGCAGGGCCATCAGCCACTGCATTAGCTGCATAGGAAAATGGTCCATTCATTTGAG
TGGTTGGGCCAATGATTGGTCAAGTTCGCTCCATCCTAATTAAATGTATAAGTATTTATTAAATGCCAGGATTTCATTTCTGGTTTCAGTTTGATTTCTTAGTTTGTTGGACGGTGTTCACTGTAATTACCCTAGTTCTGAGCATCTAAAGTTGTAGGATATACGTTGTATTGTTCTGAACTTTATTGAGATGATGAAAA
CTTTGAGATGTTACAAGTACAAAAGAGTTGTTAAGGTTGTCTCTTAATTTCTTACAAACATTATTTTTCACGAAGTCCTTTTGTCGTTTGGTTGAAATGGTTTTGTGAATGTTAAAAAGTAGAGAATAAATAAAAACCGAATGGGATTTATTATGAAATTGTTGGTAGTTCATTAGCTGCAAATTGATAAGCCTTG
>TRINITY_DN37518_c0_g1_i3 from sample A9 / Example unspliced isoform:TTTGACGAAACTGGCAGAGGAGgtatgcattggcatggttcttcgtcttactatttactaatagttgtaagcccttgctaagaatggacatattgctttgcattcagGGCAAGCTTGATCCAGTGGTTGGAAGGCAGCCACAAATAGAACGTGTGACTCAAATACTGGGACGTCGTACAAAAAATAACCCTTGTCTCATT
GGTGAGCCTGGTGTAGGGAAAACAGCTATTGCTGAGGGACTTGCACAGCGAATAGCTTCTGGAGATGTTCCCGAGACAATCGAGGGTAAAAAGGTCATTACTTTAGATATGGGGTTACTTGTGGCTGGTACTAAGTATCGTGGAGAGTTTGAAGAGAGATTGAAGAAGTTAATGGAGGAAATCAAACAGAGTGATGAGAT
TATACTCTTCATAGACGAAGTTCATACTTTGATTGGAGCAGGTGCAGCAGAAGGTGCAATTGATGCAGCCAATATTCTGAAACCATCTCTTGCACGAGGTGAACTGCAGTGTATTGGAGCCACCACCTTGGATGAATACAGAAAACACATTGAGAAGGACCCAGCGCTAGAGAGGAGATTCCAACCAGTGCAAGTGCCAG
AGCCATCTGTTGATGAGACAATACAGATACTGAAAGGTTTACGTGAGCGATATGAGATTCATCACAAACTTCGTTATACTGATGAGGCTTTGGTGGCTGCTGCAAAGTTGTCGTATCAATATATCAGTGATCGTTTTCTTCCTGACAAAGCAATTGATCTGATTGATGAGGCTGGTTCTCGAGTACGCCTTCGCCATGCA
CAGCTCCCTGAAGAAGCTAGAGAGCTCGACAAAGAACTCAGACAGATTACAAAAGAAAAGAATGAATCTGTTCGAAGCCAGGATTTTGAAAAGGCTGGAGAACTACGTGATCGTGAGATGGAACTCAAGGCACAAATTTCAGCTTTAACAGAGAAAGGAAAAGAGAAATCAAAGGCTGAGAGTGAAGCAGGAGAGGCAAG
TCCGTTAGTCACGGAGGTAGATATTCAGCAAATCGTATGTGCATGGACAGGCATTCCAGTTGAAAAGGTGTCAACAGACGAGTCTGACAAACTTTTGAAAATGGAGGAAACACTCCACCAACGCATCATTGGGCAAGATGAGGCAGTTAAAGCTATTAGTCGAGCTATTCGCCGTGCAAGAGTTGGTTTGAAGAATCCAA
ACAGGCCAATTGCGAGCTTCATTTTCTCGGGTCCTACTGGTGTTGGCAAGTCGGAGCTTGCCAAGGCATTGGCTGCATACTATTTTGGTTCAGAGGAGGCAATGATAAGGCTAGATATGAGTGAATTCATGGAAAGGCACACTGTTTCCAAGTTGATTGGTTCACCCCCGGGATATGTAGGCTACACTGAAGGAGGGCAA
CTAACTGAAGCTGTCAGGAGACGCCCTTATACGGTGGTCCTTTTCGATGAAATTGAAAAGGCTCATCCTGACGTCTTCAATATGATGCTTCAAATCCTAGAAGATGGAAGACTGACAGATAGCAAAGGCAGGACTGTGGACTTTAAGAATACGCTTTTGATCATGACTTCTAATGTTGGGAGTAGTGTGATTGAGAAGGG
AGGCCGTGGAATTGGTTTCCAACTTGATTATGATGAGAAAGACAGTAGCTACACAAGGATCAAAAGCCTTGTCAATGAAGAGCTGAAGCAATATTTTCGACCTGAGTTCCTGAATCGACTAGATGAGATGATTGTGTTTAGACAGCTTACAAAGACAGAGGTGAAAGAGATTGCAGCTATAATGTTGAAAGAGGTCTTTG
AACGGCTTAAAACAAAAGAAATTGATCTTCAAGTAACAGAGCGATTCACAGACCGAGTTGTAGATGAAGGTTATAGTCCCAGCTATGGTGCAAGGCCACTCCGTCGGGCAATTATGCGGTTATTAGAGGATAGTCTGGCTGAAAGAATGCTTGCTGGTGAGATCAAAGAGGGCGATTCAGCTATTGTTGATGTTGATAGT
GAAGGAAATGTTATTGTCTTGAATGGAAAGACTGGTACAGCAGGGCCATCAGCCACTGCATTAGCTGCATAGGAAAATGGTCCATTCATTTGAGTGGTTGGGCCAATGATTGGTCAAGTTCGCTCCATCCTAATTAAATGTATAAGTATTTATTAAATGCCAGGATTTCATTTCTGGTTTCAGTTTGATTTCTTAGTTTG
TTGGACGGTGTTCACTGTAATTACCCTAGTTCTGAGCATCTAAAGTTGTAGGATATACGTTGTATTGTTCTGAACTTTATTGAGATGATGAAAACTTTGAGATGTTACAAGTACAAAAGAGTTGTTAAGGTTGTCTCTTAATTTCTTACAAACATTATTTTTCACGAAGTCCTTTTGTCGTTTGGTTGAAATGGTTTTGT
GAATGTTAAAAAGTAGAGAATAAATAAAAACCGAATGGGATTTATTATGAAATTGTTGGTAGTTCATTAGCTGCAAATTGATAAGCCTTG
Intron 2 GTAATCTACT ... ATATGGGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 39.66 | 104.3 | 67 | 16 |
| A2 | 41.43 | 119 | 83 | 15.3 |
| A3 | 37.27 | 116.8 | 68 | 13.5 |
| A4 | 41.44 | 143.3 | 100 | 16.5 |
| A5 | 46.74 | 69 | 60 | 3 |
| A6 | 28.02 | 24.5 | 9 | 4.3 |
| A7 | 31.8 | 54.8 | 24 | 7.5 |
| A8 | 41.67 | 10 | 7 | 0.3 |
| A9 | 36.78 | 73.8 | 42 | 4.3 |
| A10 | 38.05 | 74.8 | 45 | 3.3 |
>TRINITY_DN116650_c0_g1_i3 from sample A1 / Example spliced isoformCAACATCGCTCTTAACCATGAATAAATAAAATGTAAGTTCGATTGCAAAAGAAACGTCAGATATTATATCGATATGAGCCGTGAGACATTTGAGCATCCACGTCGTCCACAAATTCCAAATGCTATCTATCCCGTGCCTCTTAAATGTTAAACCATTAATGACATACAATCTGCCATATCTTCACTCCCATTGATTTCCT
CACTGGGAAAAAAACTGCTGTCCAGGAGGAGGAGGATCTTCATCTCAAGGCCCTGCAGTAGCAGAGTTCCATGTGACGGATTATAATCTGAAATCGCCTTTATCTGCAAGAGGGTTTTCTGTGGATCGAAGCCCTACATCAATCTACTGCATTTCCGGGACTCTTCCTGTATACTTTGCTTCAGGATTTCTTTACCTGAT
CAAGCAGATTAAGCAGGCTAATTGTCTGGGTAAGATGGCTGGAGCACTAGCACAATCTGCAATTCTTCCTGGTAGAATAATCAGTACAAAGCATGGTCAAATTCAGAGCTCTAAAAGAGGAAAAGGAGTTCCAAAGATGATCCGTAAGGTGCATTCACGATCCTTTAGCATGCAAAGTTTCACTGGGTTGCGCCAAGCAA
CGTGCATAGATAAGGTTGGAAGGCCTGTAAAAGATTTTCATGCAGCAGTAGCAGCCTCAATTTGTCTTCCAGTGGGGAAAGGCAATAGAGGTGTGGTTGTAGCTATGTTTGAGCGCTTTACTGAGAAGGCCATCAAGGTAATTATGCTTGCTCAAGAGGAAGCACGACGCCTTGGGCACAATTTTGTAGGTACAGAACAG
ATTCTCTTAGGTCTTATTGGTGAAGGGACTGGTATTGCAGCAAAGGTCCTAAAATCCATGGGAATCAATCTCAAGGAGGCTCGTGTAGAGGTTGAGAAAATCATTGGTAGAGGCAGTGGGTTTGTTGCTGTGGAGATTCCATTCACTCCCAGAGCAAAGCGTGTGTTGGAACTTTCCCTTGAGGAAGCTCGACAACTTGG
>TRINITY_DN116650_c0_g1_i6 from sample A1 / Example unspliced isoform:CAACATCGCTCTTAACCATGAATAAATAAAATGTAAGTTCGATTGCAAAAGAAACGTCAGATATTATATCGATATGAGCCGTGAGACATTTGAGCATCCACGTCGTCCACAAATTCCAAATGCTATCTATCCCGTGCCTCTTAAATGTTAAACCATTAATGACATACAATCTGCCATATCTTCACTCCCATTGATTTCCT
CACTGGGAAAAAAACTGCTGTCCAGGAGGAGGAGGATCTTCATCTCAAGGCCCTGCAGTAGCAGAGTTCCATGTGACGGATTATAATCTGAAATCGCCTTTATCTGCAAGgtaatctacttcacgagctgaaattcatgttcaaacatctcttcttattgggttttctgtccagtctttgataaatttgcatcttggact
tttctgtttgttggtaatgtgttgaacttcaatgttgtcgggattgccatgaattgatttatggatatctgccacaactgggtttttgaaatctttcatggtttttattggcatatgggtagAGGGTTTTCTGTGGATCGAAGCCCTACATCAATCTACTGCATTTCCGGGACTCTTCCTGTATACTTTGCTTCAGGTAG
CGCAAATTAACAATTGGGTCGTGTTTTGTTGGGTTA
Intron 3 GTAATCTACT ... TTTGCTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 23.61 | 296 | 67 | 116 |
| A2 | 26.1 | 252 | 83 | 95 |
| A3 | 22.79 | 337 | 68 | 131 |
| A4 | 27.42 | 311 | 100 | 135 |
| A5 | 21.1 | 200 | 60 | 47 |
| A6 | 21.62 | 58 | 9 | 23 |
| A7 | 20.97 | 179 | 24 | 71 |
| A8 | 22.67 | 29 | 7 | 10 |
| A9 | 21.74 | 198 | 42 | 68 |
| A10 | 20.21 | 225 | 45 | 69 |
>TRINITY_DN116650_c0_g1_i1 from sample A1 / Example spliced isoformCAACATCGCTCTTAACCATGAATAAATAAAATGTAAGTTCGATTGCAAAAGAAACGTCAGATATTATATCGATATGAGCCGTGAGACATTTGAGCATCCACGTCGTCCACAAATTCCAAATGCTATCTATCCCGTGCCTCTTAAATGTTAAACCATTAATGACATACAATCTGCCATATCTTCACTCCCATTGATTTCCT
CACTGGGAAAAAAACTGCTGTCCAGGAGGAGGAGGATCTTCATCTCAAGGCCCTGCAGTAGCAGAGTTCCATGTGACGGATTATAATCTGAAATCGCCTTTATCTGCAAGGATTTCTTTACCTGATCAAGCAGATTAAGCAGGCTAATTGTCTGGGTAAGATGGCTGGAGCACTAGCACAATCTGCAATTCTTCCTGGTA
GAATAATCAGTACAAAGCATGGTCAAATTCAGAGCTCTAAAAGAGGAAAAGGAGTTCCAAAGATGATCCGTAAGGTGCATTCACGATCCTTTAGCATGCAAAGTTTCACTGGGTTGCGCCAAGCAACGTGCATAGATAAGGTTGGAAGGCCTGTAAAAGATTTTCATGCAGCAGTAGCAGCCTCAATTTGTCTTCCAGTG
GGGAAAGGCAATAGAGGTGTGGTTGTAGCTATGTTTGAGCGCTTTACTGAGAAGGCCATCAAGGTAATTATGCTTGCTCAAGAGGAAGCACGACGCCTTGGGCACAATTTTGTAGGTACAGAACAGATTCTCTTAGGTCTTATTGGTGAAGGGACTGGTATTGCAGCAAAGGTCCTAAAATCCATGGGAATCAATCTCAA
GGAGGCTCGTGTAGAGGTTGAGAAAATCATTGGTAGAGGCAGTGGGTTTGTTGCTGTGGAGATTCCATTCACTCCCAGAGCAAAGCGTGTGTTGGAACTTTCCCTTGAGGAAGCTCGACAACTTGGTTTGTTTTTATGGCCTTACAATATCTATCTTTACCACAAAATTTATTAATAGGACAAGTTTTT
>TRINITY_DN116650_c0_g1_i2 from sample A1 / Example unspliced isoform:CAACATCGCTCTTAACCATGAATAAATAAAATGTAAGTTCGATTGCAAAAGAAACGTCAGATATTATATCGATATGAGCCGTGAGACATTTGAGCATCCACGTCGTCCACAAATTCCAAATGCTATCTATCCCGTGCCTCTTAAATGTTAAACCATTAATGACATACAATCTGCCATATCTTCACTCCCATTGATTTCCT
CACTGGGAAAAAAACTGCTGTCCAGGAGGAGGAGGATCTTCATCTCAAGGCCCTGCAGTAGCAGAGTTCCATGTGACGGATTATAATCTGAAATCGCCTTTATCTGCAAGgtaatctacttcacgagctgaaattcatgttcaaacatctcttcttattgggttttctgtccagtctttgataaatttgcatcttggact
tttctgtttgttggtaatgtgttgaacttcaatgttgtcgggattgccatgaattgatttatggatatctgccagaactgggtttctgaaatctttcatggtttttattggcatatgggtagagggttttctgtggatcgaagccctacatcaatctactgcatttccgggactcttcctgtatactttgcttcagGATT
TCTTTACCTGATCAAGCAGATTAAGCAGGCTAATTGTCTGGGTAAGATGGCTGGAGCACTAGCACAATCTGCAATTCTTCCTGGTAGAATAATCAGTACAAAGCATGGTCAAATTCAGAGCTCTAAAAGAGGAAAAGGAGTTCCAAAGATGATCCGTAAGGTGCATTCACGATCCTTTAGCATGCAAAGTTTCACTGGGT
TGCGCCAAGCAACGTGCATAGATAAGGTTGGAAGGCCTGTAAAAGATTTTCATGCAGCAGTAGCAGCCTCAATTTGTCTTCCAGTGGGGAAAGGCAATAGAGGTGTGGTTGTAGCTATGTTTGAGCGCTTTACTGAGAAGGCCATCAAGGTAATTATGCTTGCTCAAGAGGAAGCACGACGCCTTGGGCACAATTTTGTA
GGTACAGAACAGATTCTCTTAGGTCTTATTGGTGAAGGGACTGGTATTGCAGCAAAGGTCCTAAAATCCATGGGAATCAATCTCAAGGAGGCTCGTGTAGAGGTTGAGAAAATCATTGGTAGAGGCAGTGGGTTTGTTGCTGTGGAGATTCCATTCACTCCCAGAGCAAAGCGTGTGTTGGAACTTTCCCTTGAGGAAGC
TCGACAACTTGGACACAACTACATAGGATCTGAGCACTTGCTTTTAGGTTTATTGCGGGAGGGTGAAGGCGTTGCAGCTCGTGTGCTTGAGAATCTTGGAGCTGACCCCAGCAATATTCGTACACAGGTAATTCGGATGGTTGGAGAAAGTACAGAAGCTGTTGGTGCTGGAGTTGGAGGTGGTAGCAGCAGCAACAAGA
TGCCGACTCTTGAGGAATATGGAACAAATTTGACGAAACTGGCAGAGGAGGGCAAGCTTGATCCAGTGGTTGGAAGGCAGCCACAAATAGAACGTGTGACTCAAATACTGGGACGTCGTACAAAAAATAACCCTTGTCTCATTGGTGAGCCTGGTGTAGGGAAAACAGCTATTGCTGAGGGACTTGCACAGCGAATAGCT
TCTGGAGATGTTCCCGAGACAATCGAGGGTAAAAAGGTCATTACTTTAGATATGGGGTTACTTGTGGCTGGTACTAAGTATCGTGGAGAGTTTGAAGAGAGATTGAAGAAGTTAATGGAGGAAATCAAACAGAGTGATGAGATTATACTCTTCATAGACGAAGTTCATACTTTGATTGGAGCAGGTGCAGCAGAAGGTGC
AATTGATGCAGCCAATATTCTGAAACCATCTCTTGCACGAGGTGAACTGCAGTGTATTGGAGCCACCACCTTGGATGAATACAGAAAACACATTGAGAAGGACCCAGCGCTAGAGAGGAGATTCCAACCAGTGCAAGTGCCAGAGCCATCTGTTGATGAGACAATACAGATACTGAAAGGTTTACGTGAGCGATATGAGA
TTCATCACAAACTTCGTTATACTGATGAGGCTTTGGTGGCTGCTGCAAAGTTGTCGTATCAATATATCAGTGATCGTTTTCTTCCTGACAAAGCAATTGATCTGATTGATGAGGCTGGTTCTCGAGTACGCCTTCGCCATGCACAGCTCCCTGAAGAAGCTAGAGAGCTCGACAAAGAACTCAGACAGATTACAAAAGAA
AAGAATGAATCTGTTCGAAGCCAGGATTTTGAAAAGGCTGGAGAACTACGTGATCGTGAGATGGAACTCAAGGCACAAATTTCAGCTTTAACAGAGAAAGGAAAAGAGAAATCAAAGGCTGAGAGTGAAGCAGGAGAGGCAAGTCCGTTAGTCACGGAGGTAGATATTCAGCAAATCGTATGTGCATGGACAGGCATTCC
AGTTGAAAAGGTGTCAACAGACGAGTCTGACAAACTTTTGAAAATGGAGGAAACACTCCACCAACGCATCATTGGGCAAGATGAGGCAGTTAAAGCTATTAGTCGAGCTATTCGCCGTGCAAGAGTTGGTTTGAAGAATCCAAACAGGCCAATTGCGAGCTTCATTTTCTCGGGTCCTACTGGTGTTGGCAAGTCGGAGC
TTGCCAAGGCATTGGCTGCATACTATTTTGGTTCAGAGGAGGCAATGATAAGGCTAGATATGAGTGAATTCATGGAAAGGCACACTGTTTCCAAGTTGATTGGTTCACCCCCGGGATATGTAGGCTACACTGAAGGAGGGCAACTAACTGAAGCTGTCAGGAGACGCCCTTATACGGTGGTCCTTTTCGATGAAATTGAA
AAGGCTCATCCTGACGTCTTCAATATGATGCTTCAAATCCTAGAAGATGGAAGACTGACAGATAGCAAAGGCAGGACTGTGGACTTTAAGAATACGCTTTTGATCATGACTTCTAATGTTGGGAGTAGTGTGATTGAGAAGGGAGGCCGTGGAATTGGTTTCCAACTTGATTATGATGAGAAAGACAGTAGCTACACAAG
GATCAAAAGCCTTGTCAATGAAGAGCTGAAGCAATATTTTCGACCTGAGTTCCTGAATCGACTAGATGAGATGATTGTGTTTAGACAGCTTACAAAGACAGAGGTGAAAGAGATTGCAGCTATAATGTTGAAAGAGGTCTTTGAACGGCTTAAAACAAAAGAAATTGATCTTCAAGTAACAGAGCGATTCACAGACCGAG
TTGTAGATGAAGGTTATAGTCCCAGCTATGGTGCAAGGCCACTCCGTCGGGCAATTATGCGGTTATTAGAGGATAGTCTGGCTGAAAGAATGCTTGCTGGTGAGATCAAAGAGGGCGATTCAGCTATTGTTGATGTTGATAGTGAAGGAAATGTTATTGTCTTGAATGGAAAGACTGGTACAGCAGGGCCATCAGCCACT
GCATTAGCTGCATAGGAAAATGGTCCATTCATTTGAGTGGTTGGGCCAATGATTGGTCAAGTTCGCTCCATCCTAATTAAATGTATAAGTATTTATTAAATGCCAGGATTTCATTTCTGGTTTCAGTTTGATTTCTTAGTTTGTTGGACGGTGTTCACTGTAATTACCCTAGTTCTGAGCATCTAAAGTTGTAGGATATA
CGTTGTATTGTTCTGAACTTTATTGAGATGATGAAAACTTTGAGATGTTACAAGTACAAAAGAGTTGTTAAGGTTGTCTCTTAATTTCTTACAAACATTATTTTTCACGAAAAAAA
Intron 4 GTTTGTTTTT ... AATGTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 17.69 | 449 | 146 | 47 |
| A2 | 16.13 | 377 | 99 | 46 |
| A3 | 17.74 | 503 | 151 | 66 |
| A4 | 17.96 | 313 | 107 | 30 |
| A5 | 17.04 | 241 | 73 | 26 |
| A6 | 20 | 112 | 37 | 19 |
| A7 | 18.68 | 407 | 128 | 59 |
| A8 | 17.69 | 114 | 34 | 15 |
| A9 | 17.15 | 413 | 121 | 50 |
| A10 | 16.7 | 474 | 137 | 53 |
>TRINITY_DN108526_c0_g2_i1 from sample A3 / Example spliced isoformCAAATATTATATCGATATGAGCCGTGAGACATTTGAGCATCCACGTCGTCCACAAATTCCAAATGCTATCTATCCCGTGCCTCTTAAATGTTAAACCATTAATGACATACAATCTGCCATATCTTCACTCCCATTGATTTCCTCACTGGGAAAAAAACTGCTGTCCAGGAGGAGGAGGATCTTCATCTCAAGGCCCTGCA
GTAGCAGAGTTCCATGTGACGGATTATAATCTGAAATCGCCTTTATCTGCAAGAGGGTTTTCTGTGGATCGAAGCCCTACATCAATCTACTGCATTTCCGGGACTCTTCCTGTATACTTTGCTTCAGGATTTCTTTACCTGATCAAGCAGATTAAGCAGGCTAATTGTCTGGGTAAGATGGCTGGAGCACTAGCACAATC
TGCAATTCTTCCTGGTAGAATAATCAGTACAAAGCATGGTCAAATTCAGAGCTCTAAAAGAGGAAAAGGAGTTCCAAAGATGATCCGTAAGGTGCATTCACGATCCTTTAGCATGCAAAGTTTCACTGGGTTGCGCCAAGCAACGTGCATAGATAAGGTTGGAAGGCCTGTAAAAGATTTTCATGCAGCAGTAGCAGCCT
CAATCTGTCTTCCAGTGGGGAAAGGCAATAGAGGTGTGGTTGTAGCTATGTTTGAGCGCTTTACTGAGAAGGCCATCAAGGTAATTATGCTTGCTCAAGAGGAAGCACGACGCCTTGGGCACAATTTTGTAGGTACAGAACAGATTCTCTTAGGTCTTATTGGTGAAGGGACTGGTATTGCAGCAAAGGTCCTAAAATCC
ATGGGAATCAATCTCAAGGAGGCTCGTGTAGAGGTTGAGAAAATCATTGGTAGAGGCAGTGGGTTTGTTGCTGTGGAGATTCCATTCACTCCCAGAGCAAAGCGTGTGTTGGAACTTTCCCTTGAGGAAGCTCGACAACTTGGACACAACTACATAGGATCTGAGCACTTGCTTTTAGGTTTATTGCGGGAGGGTGAAGG
CGTTGCAGCTCGTGTGCTTGAGAATCTTGGAGCTGACCCCAGCAATATTCGTACACAGGTAATTCGGATGGTTGGAGAAAGTACAGAAGCTGTTGGTGCTGGAGTTGGAGGTGGTAGCAGCAGCAACAAGATGCCGACTCTTGAGGAATATGGAACAAATTTGACGAAACTGGCAGAGGAGGGCAAGCTTGATCCAGTGG
TTGGAAGGCAGCCACAAATAGAACGTGTGACTCAAATACTGGGACGTCGTACAAAAAATAACCCTTGTCTCATTGGTGAGCCTGGTGTAGGGAAAACAGCTATTGCTGAGGGACTTGCACAGCGAATAGCTTCTGGAGATGTTCCCGAGACAATCGAGGGTAAAAAGGTCATTACTTTAGATATGGGGTTACTTGTGGCT
GGTACTAAGTATCGTGGAGAGTTTGAAGAGAGATTGAAGAAGTTAATGGAGGAAATCAAACAGAGTGATGAGATTATACTCTTCATAGACGAAGTTCATACTTTGATTGGAGCAGGTGCAGCAGAAGGTGCAATTGATGCAGCCAATATTCTGAAACCATCTCTTGCACGAGGTGAACTGCAGTGTATTGGAGCCACCAC
CTTGGATGAATACAGAAAACACATTGAGAAGGACCCAGCGCTAGAGAGGAGATTCCAACCAGTGCAAGTGCCAGAGCCATCTGTTGATGAGACAATACAGATACTGAAAGGTTTACGTGAGCGATATGAGATTCATCACAAACTTCGTTATACTGATGAGGCTTTGGTGGCTGCTGCAAAGTTGTCGTATCAATATATCA
GTGATCGTTTTCTTCCTGACAAAGCAATTGATCTGATTGATGAGGCTGGTTCTCGAGTACGCCTTCGCCATGCACAGCTCCCTGAAGAAGCTAGAGAGCTCGACAAAGAACTCAGACAGATTACAAAAGAAAAGAATGAATCTGTTCGAAGCCAGGATTTTGAAAAGGCTGGAGAACTACGTGATCGTGAGATGGAACTC
AAGGCACAAATTTCAGCTTTAACAGAGAAAGGAAAAGAGAAATCAAAGGCTGAGAGTGAAGCAGGAGAGGCAAGTCCGTTAGTCACGGAGGTAGATATTCAGCAAATCGTATGTGCATGGACAGGCATTCCAGTTGAAAAGGTGTCAACAGACGAGTCTGACAAACTTTTGAAAATGGAGGAAACACTCCACCAACGCAT
CATTGGGCAAGATGAGGCAGTTAAAGCTATTAGTCGAGCTATTCGCCGTGCAAGAGTTGGTTTGAAGAATCCAAACAGGCCAATTGCGAGCTTCATTTTCTCGGGTCCTACTGGTGTTGGCAAGTCGGAGCTTGCCAAGGCATTGGCTGCATACTATTTTGGTTCAGAGGAGGCAATGATAAGGCTAGATATGAGTGAAT
TCATGGAAAGGCACACTGTTTCCAAGTTGATTGGTTCACCCCCGGGATATGTAGGCTACACTGAAGGAGGGCAACTAACTGAAGCTGTCAGGAGACGCCCTTATACGGTGGTCCTTTTCGATGAAATTGAAAAGGCTCATCCTGACGTCTTCAATATGATGCTTCAAATCCTAGAAGATGGAAGACTGACAGATAGCAAA
GGCAGGACTGTGGACTTTAAGAATACGCTTTTGATCATGACTTCTAATGTTGGGAGTAGTGTGATTGAGAAGGGAGGCCGTGGAATTGGTTTCCAACTTGATTATGATGAGAAAGACAGTAGCTACACAAGGATCAAAAGCCTTGTCAATGAAGAGCTGAAGCAATATTTTCGACCTGAGTTCCTGAATCGACTAGATGA
GATGATTGTGTTTAGACAGCTTACAAAGACAGAGGTGAAAGAGATTGCAGCTATAATGTTGAAAGAGGTCTTTGAACGGCTTAAAACAAAAGAAATTGATCTTCAAGTAACAGAGCGATTCACAGACCGAGTTGTAGATGAAGGTTATAGTCCCAGCTATGGTGCAAGGCCACTCCGTCGGGCAATTATGCGGTTATTAG
AGGATAGTCTGGCTGAAAGAATGCTTGCTGGTGAGATCAAAGAGGGCGATTCAGCTATTGTTGATGTTGATAGTGAAGGAAATGTTATTGTCTTGAATGGAAAGACTGGTACAGCAGGGCCATCAGCCACTGCATTAGCTGCATAGGAAAATGGTCCATTCATTTGAGTGGTTGGGCCAATGATTGGTCAAGTTCGCTCC
ATCCTAATTAAATGTATAAGTATTTATTAAATGCCAGGATTTCATTTCTGGTTTCAGTTTGATTTCTTAGTTTGTTGGACGGTGTTCACTGTAATTACCCTAGTTCTGAGCATCTAAAGTTGTAGGATATACGTTGTATTGTTCTGAACTTTATTGAGATGATGAAAACTTTGAGATGTTACAAGTACAAAAGAGTTGTT
AAGGTTGTCTCTTAATTTCTTACAAACATTATTTTTCACGAAGTCCTTTTGTCGTTTGGTTGAAATGGTTTTGTGAATGTTAAAAAGTAGAGAATAAATAAAAACCGAATGGGATTTATTATGAAATTGTTGGTAGTTCATTAGCTGCAAATTGATAAGCCTTGTTGTAGATATTTGAGTATAAATTGGCATCCATGTAA
AATTTGAATTGTTTTATTACTATGTAGACTCTATGTTGAGAATATGAATGAAATTCAGCCCAAAAAAAAATAAA
>TRINITY_DN108526_c0_g2_i2 from sample A3 / Example unspliced isoform:CAAATATTATATCGATATGAGCCGTGAGACATTTGAGCATCCACGTCGTCCACAAATTCCAAATGCTATCTATCCCGTGCCTCTTAAATGTTAAACCATTAATGACATACAATCTGCCATATCTTCACTCCCATTGATTTCCTCACTGGGAAAAAAACTGCTGTCCAGGAGGAGGAGGATCTTCATCTCAAGGCCCTGCA
GTAGCAGAGTTCCATGTGACGGATTATAATCTGAAATCGCCTTTATCTGCAAGGATTTCTTTACCTGATCAAGCAGATTAAGCAGGCTAATTGTCTGGGTAAGATGGCTGGAGCACTAGCACAATCTGCAATTCTTCCTGGTAGAATAATCAGTACAAAGCATGGTCAAATTCAGAGCTCTAAAAGAGGAAAAGGAGTTC
CAAAGATGATCCGTAAGGTGCATTCACGATCCTTTAGCATGCAAAGTTTCACTGGGTTGCGCCAAGCAACGTGCATAGATAAGGTTGGAAGGCCTGTAAAAGATTTTCATGCAGCAGTAGCAGCCTCAATCTGTCTTCCAGTGGGGAAAGGCAATAGAGGTGTGGTTGTAGCTATGTTTGAGCGCTTTACTGAGAAGGCC
ATCAAGGTAATTATGCTTGCTCAAGAGGAAGCACGACGCCTTGGGCACAATTTTGTAGGTACAGAACAGATTCTCTTAGGTCTTATTGGTGAAGGGACTGGTATTGCAGCAAAGGTCCTAAAATCCATGGGAATCAATCTCAAGGAGGCTCGTGTAGAGGTTGAGAAAATCATTGGTAGAGGCAGTGGGTTTGTTGCTGT
GGAGATTCCATTCACTCCCAGAGCAAAGCGTGTGTTGGAACTTTCCCTTGAGGAAGCTCGACAACTTGgtttgtttttatggccttacaatatctatctttaccacaaaatttattaataggacaagtttttaatggttatttttcaatgtttcaattctctaaactcacattattttatgaatgttgcagGACACAACT
ACATAGGATCTGAGCACTTGCTTTTAGGTTTATTGCGGGAGGGTGAAGGCGTTGCAGCTCGTGTGCTTGAGAATCTTGGAGCTGACCCCAGCAATATTCGTACACAGGTAATTCGGATGGTTGGAGAAAGTACAGAAGCTGTTGGTGCTGGAGTTGGAGGTGGTAGCAGCAGCAACAAGATGCCGACTCTTGAGGAATAT
GGAACAAATTTGACGAAACTGGCAGAGGAGGGCAAGCTTGATCCAGTGGTTGGAAGGCAGCCACAAATAGAACGTGTGACTCAAATACTGGGACGTCGTACAAAAAATAACCCTTGTCTCATTGGTGAGCCTGGTGTAGGGAAAACAGCTATTGCTGAGGGACTTGCACAGCGAATAGCTTCTGGAGATGTTCCCGAGAC
AATCGAGGGTAAAAAGGTCATTACTTTAGATATGGGGTTACTTGTGGCTGGTACTAAGTATCGTGGAGAGTTTGAAGAGAGATTGAAGAAGTTAATGGAGGAAATCAAACAGAGTGATGAGATTATACTCTTCATAGACGAAGTTCATACTTTGATTGGAGCAGGTGCAGCAGAAGGTGCAATTGATGCAGCCAATATTC
TGAAACCATCTCTTGCACGAGGTGAACTGCAGTGTATTGGAGCCACCACCTTGGATGAATACAGAAAACACATTGAGAAGGACCCAGCGCTAGAGAGGAGATT
Intron 5 GTGATTTGAC ... TATTAAGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 14.15 | 279 | 1 | 46 |
| A2 | 14.17 | 218 | 0 | 36 |
| A3 | 11.83 | 164 | 2 | 22 |
| A4 | 11.94 | 177 | 2 | 24 |
| A5 | 16.96 | 93 | 1 | 19 |
| A6 | 12.08 | 131 | 0 | 18 |
| A7 | 16.2 | 300 | 0 | 58 |
| A8 | 14.56 | 135 | 0 | 23 |
| A9 | 16.29 | 293 | 0 | 57 |
| A10 | 13.65 | 291 | 0 | 46 |
>TRINITY_DN101931_c0_g5_i4 from sample A4 / Example spliced isoformAAAATGTAAGTTCGATTGCAAAAGAAACGTCAGATATTATATCGATATGAGCCGTGAGACATTTGAGCATCCACGTCGTCCACAAATTCCAAATGCTATCTATCCCGTGCCTCTTAAATGTTAAACCATTAATGACATACAATCTGCCATATCTTCACTCCCATTGATTTCCTCACTGGGAAAAAAACTGCTGTCCAGGA
GGAGGAGGATCTTCATCTCAAGGCCCTGCAGTAGCAGAGTTCCATGTGACGGATTATAATCTGAAATCGCCTTTATCTGCAAGAGGGTTTTCTGTGGATCGAAGCCCTACATCAATCTACTGCATTTCCGGGACTCTTCCTGTATACTTTGCTTCAGGATTTCTTTACCTGATCAAGCAGATTAAGCAGGCTAATTGTCT
GGGTAAGATGGCTGGAGCACTAGCACAATCTGCAATTCTTCCTGGTAGAATAATCAGTACAAAGCATGGTCAAATTCAGAGCTCTAAAAGAGGAAAAGGAGTTCCAAAGATGATCCGTAAGGTGCATTCACGATCCTTTAGCATGCAAAGTTTCACTGGGTTGCGCCAAGCAACGTGCATAGATAAGGTTGGAAGGCCTG
TAAAAGATTTTCATGCAGCAGTAGCAGCCTCAATTTGTCTTCCAGTGGGGAAAGGCAATAGAGGTGTGGTTGTAGCTATGTTTGAGCGCTTTACTGAGAAGGCCATCAAGGTAATTATGCTTGCTCAAGAGGAAGCACGACGCCTTGGGCACAATTTTGTAGGTACAGAACAGATTCTCTTAGGTCTTATTGGTGAAGGG
ACTGGTATTGCAGCAAAGGTCCTAAAATCCATGGGAATCAATCTCAAGGAGGCTCGTGTAGAGGTTGAGAAAATCATTGGTAGAGGCAGTGGGTTTGTTGCTGTGGAGATTCCATTCACTCCCAGAGCAAAGCGTGTGTTGGAACTTTCCCTTGAGGAAGCTCGACAACTTGGACACAACTACATAGGATCTGAGCACTT
GCTTTTAGGTTTATTGCGGGAGGGTGAAGGCGTTGCAGCTCGTGTGCTTGAGAATCTTGGAGCTGACCCCAGCAATATTCGTACACAGGTAATTCGGATGGTTGGAGAAAGTACAGAAGCTGTTGGTGCTGGAGTTGGAGGTGGTAGCAGCAGCAACAAGATGCCGACTCTTGAGGAATATGGAACAAATTTGACGAAAC
TGGCAGAGGAGGGCAAGCTTGATCCAGTGGTTGGAAGGCAGCCACAAATAGAACGTGTGACTCAAATACTGGGACGTCGTACAAAAAATAACCCTTGTCTCATTGGTGAGCCTGGTGTAGGGAAAACAGCTATTGCTGAGGGACTTGCACAGCGAATAGCTTCTGGAGATGTTCCCGAGACAATCGAGGGTAAAAAGGTG
TAATTTACTTGGCTGTTTAAAGCTTTGTCTGTTTTACATGCTCAGCATTCTAATTTCTGAGTGATATCTTGAAATGTGACATACAGGTTCTTCACTGTTCTGGTTGTGATGGGGGTATGAAGTAGTAGCCTCAATCAATTTTTGGTCTGCCTAAAGTAGGGAATTACTGATATAAAATAAACTAAATATTTTGTGCAGGT
CATTACTTTAGATATGGGGTTACTTGTGGCTGGTACTAAGTATCGTGGAGAGTTTGAAGAGAGATTGAAGAAGTTAATGGAGGAAATCAAACAGAGTGATGAGATTATACTCTTCATAGACGAAGTTCATACTTTGATTGGAGCAGGTGCAGCAGAAGGTGCAATTGATGCAGCCAATATTCTGAAACCATCTCTTGCAC
GAGGTGAACTGCAGTGTATTGGAGCCACCACCTTGGATGAATACAGAAAACACATTGAGAAGGACCCAGCGCTAGAGAGGAGATTCCAACCAGTGCAAGTGCCAGAGCCATCTGTTGATGAGACAATACAGATACTGAAAGGTTTACGTGAGCGATATGAGATTCATCACAAACTTCGTTATACTGATGAGGCTTTGGTG
GCTGCTGCAAAGTTGTCGTATCAATATATCAGTGATCGTTTTCTTCCTGACAAAGCAATTGATCTGATTGATGAGGCTGGTTCTCGAGTACGCCTTCGCCATGCACAGCTCCCTGAAGAAGCTAGAGAGCTCGACAAAGAACTCAGACAGATTACAAAAGAAAAGAATGAATCTGTTCGAAGCCAGGATTTTGAAAAGGC
TGGAGAACTACGTGATCGTGAGATGGAACTCAAGGCACAAATTTCAGCTTTAACAGAGAAAGGAAAAGAGAAATCAAAGGCTGAGAGTGAAGCAGGAGAGGCAAGTCCGTTAGTCACGGAGGTAGATATTCAGCAAATCGTATGTGCATGGACAGGCATTCCAGTTGAAAAGGTGTCAACAGACGAGTCTGACAAACTTT
TGAAAATGGAGGAAACACTCCACCAACGCATCATTGGGCAAGATGAGGCAGTTAAAGCTATTAGTCGAGCTATTCGCCGTGCAAGAGTTGGTTTGAAGAATCCAAACAGGCCAATTGCGAGCTTCATTTTCTCGGGTCCTACTGGTGTTGGCAAGTCGGAGCTTGCCAAGGCATTGGCTGCATACTATTTTGGTTCAGAG
GAGGCAATGATAAGGCTAGATATGAGTGAATTCATGGAAAGGCACACTGTTTCCAAGTTGATTGGTTCACCCCCGGGATATGTAGGCTACACTGAAGGAGGGCAACTAACTGAAGCTGTCAGGAGACGCCCTTATACGGTGGTCCTTTTCGATGAAATTGAAAAGGCTCATCCTGACGTCTTCAATATGATGCTTCAAAT
CCTAGAAGATGGAAGACTGACAGATAGCAAAGGCAGGACTGTGGACTTTAAGAATACGCTTTTGATCATGACTTCTAATGTTGGGAGTAGTGTGATTGAGAAGGGAGGCCGTGGAATTGGTTTCCAACTTGATTATGATGAGAAAGACAGTAGCTACACAAGGATCAAAAGCCTTGTCAATGAAGAGCTGAAGCAATATT
TTCGACCTGAGTTCCTGAATCGACTAGATGAGATGATTGTGTTTAGACAGCTTACAAAGACAGAGGTGAAAGAGATTGCAGCTATAATGTTGAAAGAGGTCTTTGAACGGCTTAAAACAAAAGAAATTGATCTTCAAGTAACAGAGCGATTCACAGACCGAGTTGTAGATGAAGGTTATAGTCCCAGCTATGGTGCAAGG
CCACTCCGTCGGGCAATTATGCGGTTATTAGAGGATAGTCTGGCTGAAAGAATGCTTGCTGGTGAGATCAAAGAGGGCGATTCAGCTATTGTTGATGTTGATAGTGAAGGAAATGTTATTGTCTTGAATGGAAAGACTGGTACAGCAGGGCCATCAGCCACTGCATTAGCTGCATAGGAAAATGGTCCATTCATTTGAGT
GGTTGGGCCAATGATTGGTCAAGTTCGCTCCATCCTAATTAAATGTATAAGTATTTATTAAATGCCAGGATTTCATTTCTGGTTTCAGTTTGATTTCTTAGTTTGTTGGACGGTGTTCACTGTAATTACCCTAGTTCTGAGCATCTAAAGTTGTAGGATATACGTTGTATTGTTCTGAACTTTATTGAGATGATGAAAAC
TTTGAGATGTTACAAGTACAAAAGAGTTGTTAAGGTTGTCTCTTAATTTCTTACAAACG
>TRINITY_DN101931_c0_g5_i1 from sample A4 / Example unspliced isoform:GAGTACGCCTTCGCCATGCACAGgtgatttgaccttcatagttgtatatccttgtaattgacattattgcgttctttaaaagaattcatgggtcacattatttttagatggctgttaaatctttctagtactaataattttctattaagcagCTCCCTGAAGAAGCTAGAGAGCTCGACAAAGAACTCAGACAGATTACA
AAAGAAAAGAATGAATCTGTTCGAAGCCAGGATTTTGAAAAGGCTGGAGAACTACGTGATCGTGAGATGGAACTCAAGGCACAAATTTCAGCTTTAACAGAGAAAGGAAAAGAGAAATCAAAGGCTGAGAGTGAAGCAGGAGAGGCAAGTCCGTTAGTCACGGAGGTAGATATTCAGCAAATCGTATGTGCATGGACAGG
CATTCCAGTTGAAAAGGTGTCAACAGACGAGTCTGACAAACTTTTGAAAATGGAGGAAACACTCCACCAACGCATCATTGGGCAAGATGAGGCAGTTAAAGCTATTAGTCGAGCTATTCGCCGTGCAAGAGTTGGTTTGAAGAATCCAAACAGGCCAATTGCGAGCTTCATTTTCTCGGGTCCTACTGGTGTTGGCAAGT
CGGAGCTTGCCAAGGCA
Intron 6 GTGTAATTTA ... TTTTGTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 20.12 | 405 | 46.5 | 102 |
| A2 | 21.23 | 308 | 45.5 | 83 |
| A3 | 21.75 | 403 | 39 | 112 |
| A4 | 23.13 | 246 | 23.5 | 74 |
| A5 | 21.79 | 122 | 12 | 34 |
| A6 | 18.75 | 117 | 10.5 | 27 |
| A7 | 21.1 | 460 | 53 | 123 |
| A8 | 22.88 | 118 | 9.5 | 35 |
| A9 | 19.39 | 420 | 51.5 | 101 |
| A10 | 24.59 | 503 | 52.5 | 164 |
>TRINITY_DN108526_c0_g2_i2 from sample A3 / Example spliced isoformCAAATATTATATCGATATGAGCCGTGAGACATTTGAGCATCCACGTCGTCCACAAATTCCAAATGCTATCTATCCCGTGCCTCTTAAATGTTAAACCATTAATGACATACAATCTGCCATATCTTCACTCCCATTGATTTCCTCACTGGGAAAAAAACTGCTGTCCAGGAGGAGGAGGATCTTCATCTCAAGGCCCTGCA
GTAGCAGAGTTCCATGTGACGGATTATAATCTGAAATCGCCTTTATCTGCAAGGATTTCTTTACCTGATCAAGCAGATTAAGCAGGCTAATTGTCTGGGTAAGATGGCTGGAGCACTAGCACAATCTGCAATTCTTCCTGGTAGAATAATCAGTACAAAGCATGGTCAAATTCAGAGCTCTAAAAGAGGAAAAGGAGTTC
CAAAGATGATCCGTAAGGTGCATTCACGATCCTTTAGCATGCAAAGTTTCACTGGGTTGCGCCAAGCAACGTGCATAGATAAGGTTGGAAGGCCTGTAAAAGATTTTCATGCAGCAGTAGCAGCCTCAATCTGTCTTCCAGTGGGGAAAGGCAATAGAGGTGTGGTTGTAGCTATGTTTGAGCGCTTTACTGAGAAGGCC
ATCAAGGTAATTATGCTTGCTCAAGAGGAAGCACGACGCCTTGGGCACAATTTTGTAGGTACAGAACAGATTCTCTTAGGTCTTATTGGTGAAGGGACTGGTATTGCAGCAAAGGTCCTAAAATCCATGGGAATCAATCTCAAGGAGGCTCGTGTAGAGGTTGAGAAAATCATTGGTAGAGGCAGTGGGTTTGTTGCTGT
GGAGATTCCATTCACTCCCAGAGCAAAGCGTGTGTTGGAACTTTCCCTTGAGGAAGCTCGACAACTTGGTTTGTTTTTATGGCCTTACAATATCTATCTTTACCACAAAATTTATTAATAGGACAAGTTTTTAATGGTTATTTTTCAATGTTTCAATTCTCTAAACTCACATTATTTTATGAATGTTGCAGGACACAACT
ACATAGGATCTGAGCACTTGCTTTTAGGTTTATTGCGGGAGGGTGAAGGCGTTGCAGCTCGTGTGCTTGAGAATCTTGGAGCTGACCCCAGCAATATTCGTACACAGGTAATTCGGATGGTTGGAGAAAGTACAGAAGCTGTTGGTGCTGGAGTTGGAGGTGGTAGCAGCAGCAACAAGATGCCGACTCTTGAGGAATAT
GGAACAAATTTGACGAAACTGGCAGAGGAGGGCAAGCTTGATCCAGTGGTTGGAAGGCAGCCACAAATAGAACGTGTGACTCAAATACTGGGACGTCGTACAAAAAATAACCCTTGTCTCATTGGTGAGCCTGGTGTAGGGAAAACAGCTATTGCTGAGGGACTTGCACAGCGAATAGCTTCTGGAGATGTTCCCGAGAC
AATCGAGGGTAAAAAGGTCATTACTTTAGATATGGGGTTACTTGTGGCTGGTACTAAGTATCGTGGAGAGTTTGAAGAGAGATTGAAGAAGTTAATGGAGGAAATCAAACAGAGTGATGAGATTATACTCTTCATAGACGAAGTTCATACTTTGATTGGAGCAGGTGCAGCAGAAGGTGCAATTGATGCAGCCAATATTC
TGAAACCATCTCTTGCACGAGGTGAACTGCAGTGTATTGGAGCCACCACCTTGGATGAATACAGAAAACACATTGAGAAGGACCCAGCGCTAGAGAGGAGATT
>TRINITY_DN108526_c0_g2_i3 from sample A3 / Example unspliced isoform:GAGACAATCGAGGGTAAAAAGgtgtaatttacttggctgtttaaagctttgtctgttttacatgctcagcattctaatttctgagtgatatcttgaaatgtgacatacaggttcttcactgttctggttgtgatgggggtatgaagtagtagcctcaatcaatttttggtctgcctaaagtagggaattactgatataaa
ataaactaaatattttgtgcagGTCATTACTTTAGATATGGGGTTACTTGTGGCTGGTACTAAGTATCGTGGAGAGTTTGAAGAGAGATTGAAGAAGTTAATGGAGGAAATCAAACAGAGTGATGAGATTATACTCTTCATAGACGAAGTTCATACTTTGATTGGAGCAGGTGCAGCAGAAGGTGCAATTGATGCAGCCA
ATATTCTGAAACCATCTCTTGCACGAGGTGAACTGCAGTGTATTGGAGCCACCACCTTGGATGAATACAGAAAACACATTGAGAAGGACCCAGCGCTAGAGAGGAGATTCCAACCAGTGCAAGTGCCAGAGCCATCTGTTGATGAGACAATACAGATACTGAAAGGTTTACGTGAGCGATATGAGATTCATCACAAACTT
CGTTATACTGATGAGGCTTTGGTGGCTGCTGCAAAGTTGTCGTATCAATATATCAGTGATCGTTTTCTTCCTGACAAAGCAATTGATCTGATTGATGAGGCTGGTTCTCGAGTACGCCTTCGCCATGCACAGCTCCCTGAAGAAGCTAGAGAGCTCGACAAAGAACTCAGACAGATTACAAAAGAAAAGAATGAATCTGT
TCGAAGCCAGGATTTTGAAAAGGCTGGAGAACTACGTGATCGTGAGATGGAACTCAAGGCACAAATTTCAGCTTTAACAGAGAAAGGAAAAGAGAAATCAAAGGCTGAGAGTGAAGCAGGAGAGGCAAGTCCGTTAGTCACGGAGGTAGATATTCAGCAAATCGTATGTGCATGGACAGGCATTCCAGTTGAAAAGGTGT
CAACAGACGAGTCTGACAAACTTTTGAAAATGGAGGAAACACTCCACCAACGCATCATTGGGCAAGATGAGGCAGTTAAAGCTATTAGTCGAGCTATTCGCCGTGCAAGAGTTGGTTTGAAGAATCCAAACAGGCCAATTGCGAGCTTCATTTTCTCGGGTCCTACTGGTGTTGGCAAGTCGGAGCTTGCCAAGGCATTG
GCTGCATACTATTTTGGTTCAGAGGAGGCAATGATAAGGCTAGATATGAGTGAATTCATGGAAAGGCACACTGTTTCCAAGTTGATTGGTTCACCCCCGGGATATGTAGGCTACACTGAAGGAGGGCAACTAACTGAAGCTGTCAGGAGACGCCCTTATACGGTGGTCCTTTTCGATGAAATTGAAAAGGCTCATCCTGA
CGTCTTCAATATGATGCTTCAAATCCTAGAAGATGGAAGACTGACAGATAGCAAAGGCAGGACTGTGGACTTTAAGAATACGCTTTTGATCATGACTTCTAATGTTGGGAGTAGTGTGATTGAGAAGGGAGGCCGTGGAATTGGTTTCCAACTTGATTATGATGAGAAAGACAGTAGCTACACAAGGATCAAAAGCCTTG
TCAATGAAGAGCTGAAGCAATATTTTCGACCTGAGTTCCTGAATCGACTAGATGAGATGATTGTGTTTAGACAGCTTACAAAGACAGAGGTGAAAGAGATTGCAGCTATAATGTTGAAAGAGGTCTTTGAACGGCTTAAAACAAAAGAAATTGATCTTCAAGTAACAGAGCGATTCACAGACCGAGTTGTAGATGAAGGT
TATAGTCCCAGCTATGGTGCAAGGCCACTCCGTCGGGCAATTATGCGGTTATTAGAGGATAGTCTGGCTGAAAGAATGCTTGCTGGTGAGATCAAAGAGGGCGATTCAGCTATTGTTGATGTTGATAGTGAAGGAAATGTTATTGTCTTGAATGGAAAGACTGGTACAGCAGGGCCATCAGCCACTGCATTAGCTGCATA
GGAAAATGGTCCATTCATTTGAGTGGTTGGGCCAATGATTGGTCAAGTTCGCTCCATCCTAATTAAATGTATAAGTATTTATTAAATGCCAGGATTTCATTTCTGGTTTCAGTTTGATTTCTTAGTTTGTTGGACGGTGTTCACTGTAATTACCCTAGTTCTGAGCATCTAAAGTTGTAGGATATACGTTGTATTGTTCT
GAACTTTATTGAGATGATGAAAACTTTGAGATGTTACAAGTACAAAAGAGTTGTTAAGGTTGTCTCTTAATTTCTTACAAACATTATTTTTCACGAAGTCCTTTTGTCGTTTGGTTGAAATGGTTTTGTGAATGTTAAAAAGTAGAGAATAAATAAAAACCGAATGGGATTTATTATGAAATTGTTGGTAGTTCATTAGC
TGCAAATTGATAAGCCTTGTTGTAGATATTTGAGTATAAATTGGCATCCATGTAAAATTTGAATTGTTTTATTACTATGTAGACTCTATGTTGAGAATATGAATGAAATTCAGCCCAAAAAAAAATAAA