sp|Q8L7S4|MP702_ARATH ----> Microtubule-associated protein 70-2
Intron 1 GTAATGTAGT ... ACGGTGTAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 57.32 | 51 | 74 | 63 |
| A2 | 80.74 | 13 | 44 | 65 |
| A3 | 62.96 | 35 | 66 | 53 |
| A4 | 65.89 | 22 | 32 | 53 |
| A5 | 63.78 | 23 | 36 | 45 |
| A6 | 80 | 1 | 4 | 4 |
| A7 | 58.33 | 10 | 13 | 15 |
| A8 | 55.56 | 2 | 2 | 3 |
| A9 | 74.36 | 5 | 7 | 22 |
| A10 | 59.18 | 10 | 11 | 18 |
>TRINITY_DN47387_c2_g1_i3 from sample A10 / Example spliced isoformATTTAATTTTTCGGGTGGAGTGGCGCTGTGGTAAAATGGTAGAGTTACCCCGCGGTGCTGAGAGATGAAAGTGAAACAAGCTGGCCCGGTAAAACTTTGCCGGCCCAACTTACCAAGCACGCGTCTGACATTGGCCCTCCCTCCCTCACCAAAGAATTCAGACAAGCGAGTTCATACGAACCGTTATGTTATGTTAAGAC
AAAATATATTACATTAAGCCTAACAGTCTGACTGTCACTCGACACCTGTTTAGATTCAGACTAAACCGAACAGAATAGAAAGGAACAGCGTCGAGGACGACGGGGGAGAGACCGCTAAGGCTTCTGCAGGAGCTTCAAGATCCGGGAGCTCGACGGTCGGAGGTTCAAAATAAGCTGGTGATTTGGAGGGAGAAAACTGG
TGATTTCGAGCTATTTGACGGTGAAAACTGAATATTTTGAGCTTTTTTGGTAAAGATTCCTGCTAGAAGCGGTACTGGAGCCGAATGAATCCATGAACGGTTTAAACAGCGTCCGATGCCTTTTGTTTTATCAATTTGCTCGAAATAGCTGTTTTTTTGGGAAAATACCCAGGGTTTGATCCTGATTTTGAGTTGCTTAA
TACTGAAGACTGATCCCGGAACGCTCGGCGGAGCCAAATGAGGCTTTGAACGGTCTGAACGGGTCCTTGTGTCTGCTGGTTCGGTTAACCCTGTAAAGCTGGAGACAACAGATAAGTTTGTGGCCAGACTTTGATGAGATTGGGGCTGACGTTTCTAGGTTTTGGATGTGAGCAGTCGAGATCTTGAAGCAGCCCTCATG
GAGGACTTTTACAGTCGCCCGGGGGAAGAAGTCCTCTCTAGGGACTTTAATGCAAATGCTAAGCAGTATGGAACGGAACTGGCTTCCTCGGGGTCTTCGCTGACGCCTTCAGCGTCTTTTAGAACGGATGTCAAGGGGAGCAAGAAGAAAACCTCGATAAGGCCCAGTCTGGAGGGGGATGACATATTTCATTATTTACA
TGGCTCTGATCCAATTAAGGTTGAGCTCAACCGGCTTGAAAATGAAGTAAGAGATAAGGATCGTGAATTAGCAGAAGCTCAGGCAGAAATCAAGGCTTTGAGGTTGACAGAGCGCATGAAAGAAAAGGCAGTCGAAGAGCTCACGGATGAACTGGCGAAAGTAGACGAGAAGCTGAAGAACTGCGAAGCTTCTCTTGAAA
GCAAGAACCTTGAAATCAAGAAAATTAATGACGAGAAGAAAGCAGCATTGGCTGGCCAATTTGCAGCAGAAGCAACTCTGAGAAGAGTCCATGGTGCTCAAAAGGATGATGACATGCCACCAATTGAAGCTATTCTTGCTCCACTTGAAGCAGAACTCAAGCTTGCACGACAAGAGATTTCAAAATTGCAGGAGGATAAC
AGGGCTTTAGAACGACTTACAAAGTCCAAAGAAGCAGCCCTCCTTGAAGCAGAGAGGACAGTGCAGTTTGCTCTGGCAAAAGCTTCAATGGTTGATGATTTGCAGAATAGGAACCAGGAGTTGATGAAACAGATTGAGATTTGCCAGGAGGAGAACAAAATATTGGACAAAATGCATCGGCAGAAGGTTGCAGAGGTTGA
GAAGCTATGTCAAACAGTTCGTGAACTAGAGGAGGCTGTCCTTTCAGGTGGTGCTGCTGCCAATGCTGTGCGTGATTATCAGCGGCAAGTGAATACATTGATTGAAGGTAAGAAGACACTTGAGAGAGAACTCTCTCGGGCAAAGATAACGGCAAATCGAGTTGCATGCGTTGTTGCAAATGAATGGAAAGATGGGAATG
ACAAAGTCATGCCTGTAAAGCAGTGGCTTGAAGAACGTCATTTCCTGCAGGGTGAAATGCGGCAGCTTCGCGATAAATTAGCCATTGCAGAGCGGACTGCAAAAAGTGAAGCGGCACTTAAGGAGAAATATCAACTACGGTTGAAAGTAGTTGAAGAAGGAATAAGAGGATCACCAAATGGCGCTATTCGGCCATCCTCC
TCCGATGGACGAAGTATCAGCAATGGTCCATCTCGCCGCCAATCAATTGGTGGTGCGGAGATTGCATCAAGAGTCATGTCAAATGGTTTTGGTCCAAGGAGATCATCACTTTCTCAAATGAGGGCTTCACTGTCCGGTAATGCCAGTACAGTTTTAAAGAGCGCCAAGGGAACATCTAGGTCATTTGATGGTGGAAGATC
ATTTGATGGGGGTAGATCAATTGAACGCAACAAGACATTTACAAATGGACTCAGTGAGAACCGCACAACTAACAAAAGTAATGGGGTATCCAGAAATGCCGAATCACATGATTCTGGGAAAGAGAATTCAGATAGCAAACCACCTGAATTTACAGAAGTTGGTCCTGATGATTCTGTTTCAGGTGTGTTGTATGACATGT
TGCAAAAGGAGGTGATAGCCTTGAGAAAAGCTGCCAATGAAAAGGATCAAAGTCTTAAAGACAAGGATGATGCAATAGAGATGCTAGCAAAGAAAGTCGATACTTTGACAAAAGCAATGGAGGTAGAGGCAAAGAAAATGCGCAGAGAAGTAGCTGCCATGGAGAAAGAGGTAGCTTCAATGAGGATAGATAAGGAGCAT
GATCAAAGAGCAAGGCGCTTGAGTAGTTCGAGGGGAACTGTAAATAGCTCTCAGCTACTTTCCTCTGGCAGAAGTATGAGACACTCTTAAATTGTGCCCGGGTGTCAGGAATGCAAGCAAACTTGGCCTAATTTTCCAATGTAATGCCTATGCACAATCATTTTGGACAGAAACTGAATGTAGTGTTCAAAAGGATTATC
AAACACAGTCACTTGCATGGCAGTACATTACAGTGTCACAGATGAGAATGTGAAGGTGTCTGGTTGAGTAAACTATTAACTAACTATATTGCATGTGTGGCACTACTGGAAAAATCCAAGTACATATGGCTTGTGCATACACAGACGATGAGTTGAAGGCATGGTATACAAGCTCATATGTTTACAAAGCAGACTGCTGG
CATTGAATTGAGGTGGAAGGCTGAGCTTGTTCACATTTTGGGTTTATCTTTTGTGCTGTGTTGTCAACTTATCGCTATTGACTAGTCTCTAGGTTTATGTAATATGTTGTGCTACTTGGGTTGAGCCAGGTTCAGATTTTGCATGGGAAGGCAGTGTGTTGACACTTCTAGTTTCTGTGAATATTTATTTGTCTATAGGT
TATAATCTGATTTCTATTCACTCGATGTGTTTCTAATAGTGGCGGCCTTAGCTATTCTTCACCCTTCCAATTCTTCCCCTGCTCATTTTGGTGTGTAATGCTTGTCGTTTTGGGAGGATTACTAATCTTCCAGATAGATTATTGCCGCGAACCATAGTTATTCATTTTGGATATATTTACTTAGAATTTGCAACAACACA
GGATCCTCAGTCTCTGTTTTGAAAAGAGAATTCTTTCAAGACTCATATTTGTTCTGTTTTGAACAAAGTTAAACAAAGTGGCTGCAATTCAGTTTCTGGTTTGTTACATGCATATATTTCATAATCAGCATATATTGTATACTGGATTTTGTGCATGTATAGGATCTTATCTCTAATGTCTGTGGCAGA
>TRINITY_DN47387_c2_g1_i1 from sample A10 / Example unspliced isoform:ATTTAATTTTTCGGGTGGAGTGGCGCTGTGGTAAAATGGTAGAGTTACCCCGCGGTGCTGAGAGATGAAAGTGAAACAAGCTGGCCCGGTAAAACTTTGCCGGCCCAACTTACCAAGCACGCGTCTGACATTGGCCCTCCCTCCCTCACCAAAGAATTCAGACAAGCGAGTTCATACGAACCGTTATGTTATGTTAAGAC
AAAATATATTACATTAAGCCTAACAGTCTGACTGTCACTCGACACCTGTTTAGATTCAGACTAAACCGAACAGAATAGAAAGGAACAGCGTCGAGGACGACGGGGGAGAGACCGCTAAGGCTTCTGCAGGAGCTTCAAGATCCGGGAGCTCGACGGTCGGAGGTTCAAAATAAGgtaatgtagttcattttttgaagaaa
tttatcggtcaaatctcttgaagcggcggtaattttgctgaaatgcgaaaattcccttgatttctagctatttaatgatggaagctgtggattttgagtcattaatggtgaagctgatcatttcgagccttctaacggtgtaagCTGGTGATTTGGAGGGAGAAAACTGGTGATTTCGAGCTATTTGACGGTGAAAACTG
AATATTTTGAGCTTTTTTGGTAAAGATTCCTGCTAGAAGCGGTACTGGAGCCGAATGAATCCATGAACGGTTTAAACAGCGTCCGATGCCTTTTGTTTTATCAATTTGCTCGAAATAGCTGTTTTTTTGGGAAAATACCCAGGGTTTGATCCTGATTTTGAGTTGCTTAATACTGAAGACTGATCCCGGAACGCTCGGCG
GAGCCAAATGAGGCTTTGAACGGTCTGAACGGGTCCTTGTGTCTGCTGGTTCGGTTAACCCTGTAAAGCTGGAGACAACAGATAAGTTTGTGGCCAGACTTTGATGAGATTGGGGCTGACGTTTCTAGGTTTTGGATGTGAGCAGTCGAGATCTTGAAGCAGCCCTCATGGAGGACTTTTACAGTCGCCCGGGGGAAGAA
GTCCTCTCTAGGGACTTTAATGCAAATGCTAAGCAGTATGGAACGGAACTGGCTTCCTCGGGGTCTTCGCTGACGCCTTCAGCGTCTTTTAGAACGGATGTCAAGGGGAGCAAGAAGAAAACCTCGATAAGGCCCAGTCTGGAGGGGGATGACATATTTCATTATTTACATGGCTCTGATCCAATTAAGGTTGAGCTCAA
CCGGCTTGAAAATGAAGTAAGAGATAAGGATCGTGAATTAGCAGAAGCTCAGGCAGAAATCAAGGCTTTGAGGTTGACAGAGCGCATGAAAGAAAAGGCAGTCGAAGAGCTCACGGATGAACTGGCGAAAGTAGACGAGAAGCTGAAGAACTGCGAAGCTTCTCTTGAAAGCAAGAACCTTGAAATCAAGAAAATTAATG
ACGAGAAGAAAGCAGCATTGGCTGGCCAATTTGCAGCAGAAGCAACTCTGAGAAGAGTCCATGGTGCTCAAAAGGATGATGACATGCCACCAATTGAAGCTATTCTTGCTCCACTTGAAGCAGAACTCAAGCTTGCACGACAAGAGATTTCAAAATTGCAGGAGGATAACAGGGCTTTAGAACGACTTACAAAGTCCAAA
GAAGCAGCCCTCCTTGAAGCAGAGAGGACAGTGCAGTTTGCTCTGGCAAAAGCTTCAATGGTTGATGATTTGCAGAATAGGAACCAGGAGTTGATGAAACAGATTGAGATTTGCCAGGAGGAGAACAAAATATTGGACAAAATGCATCGGCAGAAGGTTGCAGAGGTTGAGAAGCTATGTCAAACAGTTCGTGAACTAGA
GGAGGCTGTCCTTTCAGGTGGTGCTGCTGCCAATGCTGTGCGTGATTATCAGCGGCAAGTGAATACATTGATTGAAGGTAAGAAGACACTTGAGAGAGAACTCTCTCGGGCAAAGATAACGGCAAATCGAGTTGCATGCGTTGTTGCAAATGAATGGAAAGATGGGAATGACAAAGTCATGCCTGTAAAGCAGTGGCTTG
AAGAACGTCATTTCCTGCAGGGTGAAATGCGGCAGCTTCGCGATAAATTAGCCATTGCAGAGCGGACTGCAAAAAGTGAAGCGGCACTTAAGGAGAAATATCAACTACGGTTGAAAGTAGTTGAAGAAGGAATAAGAGGATCACCAAATGGCGCTATTCGGCCATCCTCCTCCGATGGACGAAGTATCAGCAATGGTCCA
TCTCGCCGCCAATCAATTGGTGGTGCGGAGATTGCATCAAGAGTCATGTCAAATGGTTTTGGTCCAAGGAGATCATCACTTTCTCAAATGAGGGCTTCACTGTCCGGTAATGCCAGTACAGTTTTAAAGAGCGCCAAGGGAACATCTAGGTCATTTGATGGTGGAAGATCATTTGATGGGGGTAGATCAATTGAACGCAA
CAAGACATTTACAAATGGACTCAGTGAGAACCGCACAACTAACAAAAGTAATGGGGTATCCAGAAATGCCGAATCACATGATTCTGGGAAAGAGAATTCAGATAGCAAACCACCTGAATTTACAGAAGTTGGTCCTGATGATTCTGTTTCAGGTGTGTTGTATGACATGTTGCAAAAGGAGGTGATAGCCTTGAGAAAAG
CTGCCAATGAAAAGGATCAAAGTCTTAAAGACAAGGATGATGCAATAGAGATGCTAGCAAAGAAAGTCGATACTTTGACAAAAGCAATGGAGGTAGAGGCAAAGAAAATGCGCAGAGAAGTAGCTGCCATGGAGAAAGAGGTAGCTTCAATGAGGATAGATAAGGAGCATGATCAAAGAGCAAGGCGCTTGAGTAGTTCG
AGGGGAACTGTAAATAGCTCTCAGCTACTTTCCTCTGGCAGAAGTATGAGACACTCTTAAATTGTGCCCGGGTGTCAGGAATGCAAGCAAACTTGGCCTAATTTTCCAATGTAATGCCTATGCACAATCATTTTGGACAGAAACTGAATGTAGTGTTCAAAAGGATTATCAAACACAGTCACTTGCATGGCAGTACATTA
CAGTGTCACAGATGAGAATGTGAAGGTGTCTGGTTGAGTAAACTATTAACTAACTATATTGCATGTGTGGCACTACTGGAAAAATCCAAGTACATATGGCTTGTGCATACACAGACGATGAGTTGAAGGCATGGTATACAAGCTCATATGTTTACAAAGCAGACTGCTGGCATTGAATTGAGGTGGAAGGCTGAGCTTGT
TCACATTTTGGGTTTATCTTTTGTGCTGTGTTGTCAACTTATCGCTATTGACTAGTCTCTAGGTTTATGTAATATGTTGTGCTACTTGGGTTGAGCCAGGTTCAGATTTTGCATGGGAAGGCAGTGTGTTGACACTTCTAGTTTCTGTGAATATTTATTTGTCTATAGGTTATAATCTGATTTCTATTCACTCGATGTGT
TTCTAATAGTGGCGGCCTTAGCTATTCTTCACCCTTCCAATTCTTCCCCTGCTCATTTTGGTGTGTAATGCTTGTCGTTTTGGGAGGATTACTAATCTTCCAGATAGATTATTGCCGCGAACCATAGTTATTCATTTTGGATATATTTACTTAGAATTTGCAACAACACAGGATCCTCAGTCTCTGTTTTGAAAAGAGAA
TTCTTTCAAGACTCATATTTGTTCTGTTTTGAACAAAGTTAAACAAAGTGGCTGCAATTCAGTTTCTGGTTTGTTACATGCATATATTTCATAATCAGCATATATTGTATACTGGATTTTGTGCATGTATAGGATCTTATCTCTAATGTCTGTGGCAGA
Intron 2 GCATGTTTAT ... AATTTTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 13.6 | 54 | 8 | 9 |
| A2 | 22.03 | 46 | 14 | 12 |
| A3 | 15.7 | 51 | 15 | 4 |
| A4 | 20 | 34 | 12 | 5 |
| A5 | 17.86 | 23 | 5 | 5 |
| A6 | 14.29 | 3 | 1 | 0 |
| A7 | 20.66 | 48 | 19 | 6 |
| A8 | 12.2 | 18 | 3 | 2 |
| A9 | 12.5 | 28 | 5 | 3 |
| A10 | 16.36 | 46 | 9 | 9 |
>TRINITY_DN111745_c0_g1_i1 from sample A2 / Example spliced isoformGAGTGGCGCTGTGGTAAAATGGTAGAGTTACCCCGCGGTGCTGAGAGATGAAAGTGAAACAAGCTGGCCCGGTAAAACTTTGCCGGCCCAACTTACCAAGCACGCGTCTGACATTGGCCCTCCCTCCCTCACCAAAGAATTCAGACAAGCGAGTTCATACGAACCGTTATGTTATGTTAAGACAAAATATATTACATTAA
GCCTAACAGTCTGACTGTCACTCGACACCTGTTTAGATTCAGACTAAACCGAACAGAATAGAAAGGAACAGCGTCGAGGACGACGGGGGAGAGACCGCTAAGGCTTCTGCAGGAGCTTCAAGATCCGGGAGCTCGACGGTCGGAGGTTCAAAATAAGGTAATGTAGTTCATTTTTTGAAGAAATTTATCGGTCAAATCTC
TTGAAGCGGCGGTAATTTTGCTGAAATGCGAAAATTCCCTTGATTTCTAGCTATTTAATGATGGAAGCTGTGGATTTTGAGTCATTAATGGTGAAGCTGATCATTTCGAGCCTTCTAACGGTGTAAGCTGGTGATTTGGAGGGAGAAAACTGGTGATTTCGAGCTATTTGACGGTGAAAACTGAATATTTTGAGCTTTTT
TGGTAAAGATTCCTGCTAGAAGCGGTACTGGAGCCGAATGAATCCATGAACGGTTTAAACAGCGTCCGATGCCTTTTGTTTTATCAATTTGCTCGAAATAGCTGTTTTTTTGGGAAAATACCCAGGGTTTGATCCTGATTTTGAGTTGCTTAATACTGAAGACTGATCCCGGAACGCTCGGCGGAGCCAAATGAGGCTTT
GAACGGTCTGAACGGGTCCTTGTGTCTGCTGGTTCGGTTAACCCTGTAAAGCTGGAGACAACAGATAAGTTTGTGGCCAGAGTTTGATGAGATTGGGGCTGACGTTTCTAGGTTTTGGATGTGAGCAGTCGAGATCTTGAAGCAGCCCTCATGGAGGACTTTTACAGTCGCCCGGGGGAAGAAGTCCTCTCTAGGGACTT
TAATGCAAATGCTAAGCAGTATGGAACGGAACTGGCTTCCTCGGGGTCTTCGCTGACGCCTTCAGCGTCTTTTAGAACGGATGTCAAGGGGAGCAAGAAGAAAACCTCGATAAGGCCCAGTCTGGAGGGGGATGACATATTTCATTATTTACATGGCTCTGATCAAATTAAGGTTGAGCTCAACCGGCTTGAAAATGAAG
TAAGAGATAAGGATCGTGAATTAGCAGAAGCTCAGGCAGAAATCAAGGCTTTGAGGTTGACAGAGCGCATGAAAGAAAAGGCAGTCGAAGAGCTCACGGATGAACTGGCGAAAGTAGACGAGAAGCTGAAGAACTGCGAAGCTTCTCTTGAAAGCAAGAACCTTGAAATCAAGAAAATTAATGACGAGAAGAAAGCAGCA
TTGGCTGGCCAATTTGCAGCAGAAGCAACTCTGAGAAGAGTCCATGGTGCTCAAAAGGATGATGACATGCCACCAATTGAAGCTATTCTTGCTCCACTTGAAGCAGAACTCAAGCTTGCACGACAAGAGATTTCAAAATTGCAGGAGGATAACAGGGCTTTAGAACGACTTACAAAGTCCAAAGAAGCAGCCCTCCTTGA
AGCAGAGAGGACAGTGCAGTTTGCTCTGGCAAAAGCTTCAATGGTTGATGATTTGCAGAATAGGAACCAGGAGTTGATGAAACAGATTGAGATTTGCCAGGAGGAGAACAAAATATTGGACAAAATGCATCGGCAGAAGGTTGCAGAGGTTGAGAAGCTATGTCAAACAGTTCGTGAACTAGAGGAGGCTGTCCTTTCAG
GTGGTGCTGCTGCCAATGCTGTGCGTGATTATCAGCGGCAAGTGAATACATTGATTGAAGGTAAGAAGACACTTGAGAGAGAACTCTCTCGGGCAAAGATAACGGCAAATCGAGTTGCATGCGTTGTTGCAAATGAATGGAAAGATGGGAATGACAAAGTCATGCCTGTAAAGCAGTGGCTTGAAGAACGTCATTTCCTG
CAGGGTGAAATGCGGCAGCTTCGCGATAAATTAGCCATTGCAGAGCGGACTGCAAAAAGTGAAGCGGCACTTAAGGAGAAATATCAACTACGGTTGAAAGTAGTTGAAGAAGGAATAAGAGGATCACCAAATGGCGCTATTCGGCCATCCTCCTCCGATGGACGAAGTATCAGCAATGGTCCATCTCGCCGCCAATCAAT
TGGTGGTGCGGAGATTGCATCAAGAGTCATGTCAAATGGTTTTGGTCCAAGGAGATCATCACTTTCTCAAATGAGGGCTTCACTGTCCGGTAATGCCAGTACAGTTTTAAAGAGCGCCAAGGGAACATCTAGGTCATTTGATGGTGGAAGATCATTTGATGGGGGTAGATCAATTGAACGCAACAAGACATTTACAAATG
GACTCAGTGAGAACCGCACAACTAACAAAAGTAATGGGGTATCCAGAAATGCCGAATCACATGATTCTGGGAAAGAGAATTCAGATAGCAAACCACCTGAATTTACAGAAGTTGGTCCTGATGATTCTGTTTCAGGTGTGTTGTATGACATGTTGCAAAAGGAGGTGATAGCCTTGAGAAAAGCTGCCAATGAAAAGGAT
CAAAGTCTTAAAGACAAGGATGATGCAATAGAGATGCTAGCAAAGAAAGTCGATACTTTGACAAAAGCAATGGAGGTAGAGGCAAAGAAAATGCGCAGAGAAGTAGCTGCCATGGAGAAAGAGGTAGCTTCAATGAGGATAGATAAGGAGCATGATCAAAGAGCAAGGCGCTTGAGTAGTTCGAGGGGAACTGTAAATAG
CTCTCAGCTACTTTCCTCTGGCAGAAGTATGAGACACTCTTAAATTGTGCCCGGGTGTCAGGAATGCAAGCAAACTTGGCCTAATTTTCCAATGTAATGCCTATGCACAATCATTTTGGACAGAAACTGAATGTAGTGTTCAAAAGGATTATCAAACACAGTCACTTGCATGGCAGTACATTACAGTGTCACAGATGAGA
ATGTGAAGGTGTCTGGTTGAGTAAACTATTAACTAACTATATTGCATGTGTGGCACTACTGGAAAAATCCAAGTACATATGGCTTGTGCATACACAGACGATGAGTTGAAGGCATGGTATACAAGCTCATATGTTTACAAAGCAGACTGCTGGCATTGAATTGAGGTGGAAGGCTGAGCTTGTTCACATTTTGGGTTTAT
CTTTTGTGCTGTGTTGTCAACTTATCGCTATTGACTAGTCTCTAGGTTTATGTAATATGTTGTGCTACTTGGGTTGAGCCAGGTTCAGATTTTGCATGGGAAGGCAGTGTGTTGACACTTCTAGTTTCTGTGAATATTTATTTGTCTATAGGTTATAATCTGATTTCTATTCACTCGATGTGTTTCTAATAGTGGCGGCC
TTAGCTATTCTTCACCCTTCCAATTCTTCCCCTGCTCATTTTGGTGTGTAATGCTTGTCGTTTTGGGAGGATTACTAATCTTCCAGATAGATTATTGCCGCGAACCATAGTTATTCATTTTGGATATATTTACTTAGAATTTGCAACAACACAGGATCCTCAGTCTCTGTTTTGAAAAGAGAATTCTTTCAAGACTCATA
TTTGTTCTGTTTTGAACAAAGTTAAACAAAGTGGCTGCAATTCAGTTTCTGGTTTGTTACATGCATATATTTCATAATCAGCATATATTGTATACTGGATTTTGTGCATGTATAGGATCTTATCTCTAATGTCTGTGGCAGAGCATTAAAGTGATGAATGAGAATAAAGTCACTTCTTTCTT
>TRINITY_DN111745_c0_g1_i6 from sample A2 / Example unspliced isoform:TTAAACAGCGTCCGATGCCTTTTGTTTTATCAATTTGCTCGAAATAGCTGTTTTTTTGGGAAAATACCCAGGGTTTGATCCTGATTTTGAGTTGCTTAATACTGAAGACTGATCCCGGAACGCTCGGCGGAGCCAAATGAGGCTTTGAACGGTCTGAACGGGTCCTTGTGTCTGCTGGTTCGGTTAACCCTGTAAAGCTG
GAGACAACAGATAAGTTTGTGGCCAGAGTTTGATGAGATTGGGGCTGACGTTTCTAGGTTTTGGATGTGAGCAGTCGAGATCTTGAAGCAGCCCTCATGGAGGACTTTTACAGTCGCCCGGGGGAAGAAGTCCTCTCTAGGGACTTTAATGCAAATGCTAAGCAGTATGGAACGGAACTGGCTTCCTCGGGGTCTTCGCT
GACGCCTTCAGCGTCTTTTAGAACGGATGTCAAGGGGAGCAAGAAGAAAACCTCGATAAGGCCCAGTCTGGAGGGGGATGACATATTTCATTATTTACATGGCTCTGATCAAATTAAGGTTGAGCTCAACCGGCTTGAAAATGAAGTAAGAGATAAGGATCGTGAATTAGCAGAAGCTCAGGCAGAAATCAAGGCTTTGA
GGTTGACAGAGCGCATGAAAGAAAAGGCAGTCGAAGAGCTCACGGATGAACTGGCGAAAGTAGACGAGAAGCTGAAGAACTGCGAAGCTTCTCTTGAAAGCAAGgcatgtttataggaactttcaaaggcttctagttgaattttatgttttggaaactttgcttgatattatgtgccattgaatgcttcctgtgttaga
ctggtttgtgaatgattgatattctgaattcaaattttacagAACCTTGAAATCAAGAAAATTAATGACGAGAAGAAAGCAGCATTGGCTGGCCAATTTGCAGCAGAAGCAACTCTGAGAAGAGTCCATGGTGCTCAAAAGGATGATGACATGCCACCAATTGAAGCTATTCTTGCTCCACTTGAAGCAGAACTCAAGCT
TGCACGACAAGAGGTATCATTAGATGGCAGAACCTATGCTGTCACATTTATATGCTGCTATTTTACTACTCCGTTGTCTCTGCTTTGGAATTGGCCTATGTTTGCACTTGCTCTTAGTCTTCTAGTGTTTAAGAAGGTTGTTGGTTTTGGCAGATTTCAAAATTGCAGGAGGATAACAGGGCTTTAGAACGACTTACAAA
GTCCAAAGAAGCAGCCCTCCTTGAAGCAGAGAGGACAGTGCAGTTTGCTCTGGCAAAAGCTTCAATGGTTGATGATTTGCAGAATAGGAACCAGGAGTTGATGAAACAGATTGAGATTTGCCAGGAGGAGAACAAAATATTGGACAAAATGCATCGGCAGAAGGTTGCAGAGGTTGAGAAGCTATGTCAAACAGTTCGTG
AACTAGAGGAGGCTGTCCTTTCAGGTGGTGCTGCTGCCAATGCTGTGCGTGATTATCAGCGGCAAGTGAATACATTGATTGAAGGTAAGAAGACACTTGAGAGAGAACTCTCTCGGGCAAAGATAACGGCAAATCGAGTTGCATGCGTTGTTGCAAATGAATGGAAAGATGGGAATGACAAAGTCATGCCTGTAAAGCAG
TGGCTTGAAGAACGTCATTTCCTGCAGGGTGAAATGCGGCAGCTTCGCGATAAATTAGCCATTGCAGAGCGGACTGCAAAAAGTGAAGCGGCACTTAAGGAGAAATATCAACTACGGTTGAAAGTAGTTGAAGAAGGAATAAGAGGATCACCAAATGGCGCTATTCGGCCATCCTCCTCCGATGGACGAAGTATCAGCAA
TGGTCCATCTCGCCGCCAATCAATTGGTGGTGCGGAGATTGCATCAAGAGTCATGTCAAATGGTTTTGGTCCAAGGAGATCATCACTTTCTCAAATGAGGGCTTCACTGTCCGGTAATGCCAGTACAGTTTTAAAGAGCGCCAAGGGAACATCTAGGTCATTTGATGGTGGAAGATCATTTGATGGGGGTAGATCAATTG
AACGCAACAAGACATTTACAAATGGACTCAGTGAGAACCGCACAACTAACAAAAGTAATGGGGTATCCAGAAATGCCGAATCACATGATTCTGGGAAAGAGAATTCAGATAGCAAACCACCTGAATTTACAGAAGTTGGTCCTGATGATTCTGTTTCAGGTGTGTTGTATGACATGTTGCAAAAGGAGGTGATAGCCTTG
AGAAAAGCTGCCAATGAAAAGGATCAAAGTCTTAAAGACAAGGATGATGCAATAGAGATGCTAGCAAAGAAAGTCGATACTTTGACAAAAGCAATGGAGGTAGAGGCAAAGAAAATGCGCAGAGAAGTAGCTGCCATGGAGAAAGAGGTAGCTTCAATGAGGATAGATAAGGAGCATGATCAAAGAGCAAGGCGCTTGAG
TAGTTCGAGGGGAACTGTAAATAGCTCTCAGCTACTTTCCTCTGGCAGAAGTATGAGACACTCTTAAATTGTGCCCGGGTGTCAGGAATGCAAGCAAACTTGGCCTAATTTTCCAATGTAATGCCTATGCACAATCATTTTGGACAGAAACTGAATGTAGTGTTCAAAAGGATTATCAAACACAGTCACTTGCATGGCAG
TACATTACAGTGTCACAGATGAGAATGTGAAGGTGTCTGGTTGAGTAAACTATTAACTAACTATATTGCATGTGTGGCACTACTGGAAAAATCCAAGTACATATGGCTTGTGCATACACAGACGATGAGTTGAAGGCATGGTATACAAGCTCATATGTTTACAAAGCAGACTGCTGGCATTGAATTGAGGTGGAAGGCTG
AGCTTGTTCACATTTTGGGTTTATCTTTTGTGCTGTGTTGTCAACTTATCGCTATTGACTAGTCTCTAGGTTTATGTAATATGTTGTGCTACTTGGGTTGAGCCAGGTTCAGATTTTGCATGGGAAGGCAGTGTGTTGACACTTCTAGTTTCTGTGAATATTTATTTGTCTATAGGTTATAATCTGATTTCTATTCACTC
GATGTGTTTCTAATAGTGGCGGCCTTAGCTATTCTTCACCCTTCCAATTCTTCCCCTGCTCATTTTGGTGTGTAATGCTTGTCGTTTTGGGAGGATTACTAATCTTCCAGATAGATTATTGCCGCGAACCATAGTTATTCATTTTGGATATATTTACTTAGAATTTGCAACAACACAGGATCCTCAGTCTCTGTTTTGAA
AAGAGAATTCTTTCAAGACTCATATTTGTTCTGTTTTGAACAAAGTTAAACAAAGTGGCTGCAATTCAGTTTCTGGTTTGTTACATGCATATATTTCATAATCAGCATATATTGTATACTGGATTTTGTGCATGTATAGGATCTTATCTCTAATGTCTGTGGCAGAGCATTAAAGTGATGAATGAGAATAAAGTCACTTC
TTTCTT
Intron 3 GTATCATTAG ... GTTTTGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 23.2 | 48 | 13 | 16 |
| A2 | 26.62 | 51 | 20 | 17 |
| A3 | 22.11 | 37 | 16 | 5 |
| A4 | 16.42 | 28 | 4 | 7 |
| A5 | 15.79 | 16 | 5 | 1 |
| A6 | 25 | 3 | 1 | 1 |
| A7 | 20 | 38 | 17 | 2 |
| A8 | 12.2 | 18 | 3 | 2 |
| A9 | 18.84 | 28 | 10 | 3 |
| A10 | 19.48 | 31 | 4 | 11 |
>TRINITY_DN111745_c0_g1_i1 from sample A2 / Example spliced isoformGAGTGGCGCTGTGGTAAAATGGTAGAGTTACCCCGCGGTGCTGAGAGATGAAAGTGAAACAAGCTGGCCCGGTAAAACTTTGCCGGCCCAACTTACCAAGCACGCGTCTGACATTGGCCCTCCCTCCCTCACCAAAGAATTCAGACAAGCGAGTTCATACGAACCGTTATGTTATGTTAAGACAAAATATATTACATTAA
GCCTAACAGTCTGACTGTCACTCGACACCTGTTTAGATTCAGACTAAACCGAACAGAATAGAAAGGAACAGCGTCGAGGACGACGGGGGAGAGACCGCTAAGGCTTCTGCAGGAGCTTCAAGATCCGGGAGCTCGACGGTCGGAGGTTCAAAATAAGGTAATGTAGTTCATTTTTTGAAGAAATTTATCGGTCAAATCTC
TTGAAGCGGCGGTAATTTTGCTGAAATGCGAAAATTCCCTTGATTTCTAGCTATTTAATGATGGAAGCTGTGGATTTTGAGTCATTAATGGTGAAGCTGATCATTTCGAGCCTTCTAACGGTGTAAGCTGGTGATTTGGAGGGAGAAAACTGGTGATTTCGAGCTATTTGACGGTGAAAACTGAATATTTTGAGCTTTTT
TGGTAAAGATTCCTGCTAGAAGCGGTACTGGAGCCGAATGAATCCATGAACGGTTTAAACAGCGTCCGATGCCTTTTGTTTTATCAATTTGCTCGAAATAGCTGTTTTTTTGGGAAAATACCCAGGGTTTGATCCTGATTTTGAGTTGCTTAATACTGAAGACTGATCCCGGAACGCTCGGCGGAGCCAAATGAGGCTTT
GAACGGTCTGAACGGGTCCTTGTGTCTGCTGGTTCGGTTAACCCTGTAAAGCTGGAGACAACAGATAAGTTTGTGGCCAGAGTTTGATGAGATTGGGGCTGACGTTTCTAGGTTTTGGATGTGAGCAGTCGAGATCTTGAAGCAGCCCTCATGGAGGACTTTTACAGTCGCCCGGGGGAAGAAGTCCTCTCTAGGGACTT
TAATGCAAATGCTAAGCAGTATGGAACGGAACTGGCTTCCTCGGGGTCTTCGCTGACGCCTTCAGCGTCTTTTAGAACGGATGTCAAGGGGAGCAAGAAGAAAACCTCGATAAGGCCCAGTCTGGAGGGGGATGACATATTTCATTATTTACATGGCTCTGATCAAATTAAGGTTGAGCTCAACCGGCTTGAAAATGAAG
TAAGAGATAAGGATCGTGAATTAGCAGAAGCTCAGGCAGAAATCAAGGCTTTGAGGTTGACAGAGCGCATGAAAGAAAAGGCAGTCGAAGAGCTCACGGATGAACTGGCGAAAGTAGACGAGAAGCTGAAGAACTGCGAAGCTTCTCTTGAAAGCAAGAACCTTGAAATCAAGAAAATTAATGACGAGAAGAAAGCAGCA
TTGGCTGGCCAATTTGCAGCAGAAGCAACTCTGAGAAGAGTCCATGGTGCTCAAAAGGATGATGACATGCCACCAATTGAAGCTATTCTTGCTCCACTTGAAGCAGAACTCAAGCTTGCACGACAAGAGATTTCAAAATTGCAGGAGGATAACAGGGCTTTAGAACGACTTACAAAGTCCAAAGAAGCAGCCCTCCTTGA
AGCAGAGAGGACAGTGCAGTTTGCTCTGGCAAAAGCTTCAATGGTTGATGATTTGCAGAATAGGAACCAGGAGTTGATGAAACAGATTGAGATTTGCCAGGAGGAGAACAAAATATTGGACAAAATGCATCGGCAGAAGGTTGCAGAGGTTGAGAAGCTATGTCAAACAGTTCGTGAACTAGAGGAGGCTGTCCTTTCAG
GTGGTGCTGCTGCCAATGCTGTGCGTGATTATCAGCGGCAAGTGAATACATTGATTGAAGGTAAGAAGACACTTGAGAGAGAACTCTCTCGGGCAAAGATAACGGCAAATCGAGTTGCATGCGTTGTTGCAAATGAATGGAAAGATGGGAATGACAAAGTCATGCCTGTAAAGCAGTGGCTTGAAGAACGTCATTTCCTG
CAGGGTGAAATGCGGCAGCTTCGCGATAAATTAGCCATTGCAGAGCGGACTGCAAAAAGTGAAGCGGCACTTAAGGAGAAATATCAACTACGGTTGAAAGTAGTTGAAGAAGGAATAAGAGGATCACCAAATGGCGCTATTCGGCCATCCTCCTCCGATGGACGAAGTATCAGCAATGGTCCATCTCGCCGCCAATCAAT
TGGTGGTGCGGAGATTGCATCAAGAGTCATGTCAAATGGTTTTGGTCCAAGGAGATCATCACTTTCTCAAATGAGGGCTTCACTGTCCGGTAATGCCAGTACAGTTTTAAAGAGCGCCAAGGGAACATCTAGGTCATTTGATGGTGGAAGATCATTTGATGGGGGTAGATCAATTGAACGCAACAAGACATTTACAAATG
GACTCAGTGAGAACCGCACAACTAACAAAAGTAATGGGGTATCCAGAAATGCCGAATCACATGATTCTGGGAAAGAGAATTCAGATAGCAAACCACCTGAATTTACAGAAGTTGGTCCTGATGATTCTGTTTCAGGTGTGTTGTATGACATGTTGCAAAAGGAGGTGATAGCCTTGAGAAAAGCTGCCAATGAAAAGGAT
CAAAGTCTTAAAGACAAGGATGATGCAATAGAGATGCTAGCAAAGAAAGTCGATACTTTGACAAAAGCAATGGAGGTAGAGGCAAAGAAAATGCGCAGAGAAGTAGCTGCCATGGAGAAAGAGGTAGCTTCAATGAGGATAGATAAGGAGCATGATCAAAGAGCAAGGCGCTTGAGTAGTTCGAGGGGAACTGTAAATAG
CTCTCAGCTACTTTCCTCTGGCAGAAGTATGAGACACTCTTAAATTGTGCCCGGGTGTCAGGAATGCAAGCAAACTTGGCCTAATTTTCCAATGTAATGCCTATGCACAATCATTTTGGACAGAAACTGAATGTAGTGTTCAAAAGGATTATCAAACACAGTCACTTGCATGGCAGTACATTACAGTGTCACAGATGAGA
ATGTGAAGGTGTCTGGTTGAGTAAACTATTAACTAACTATATTGCATGTGTGGCACTACTGGAAAAATCCAAGTACATATGGCTTGTGCATACACAGACGATGAGTTGAAGGCATGGTATACAAGCTCATATGTTTACAAAGCAGACTGCTGGCATTGAATTGAGGTGGAAGGCTGAGCTTGTTCACATTTTGGGTTTAT
CTTTTGTGCTGTGTTGTCAACTTATCGCTATTGACTAGTCTCTAGGTTTATGTAATATGTTGTGCTACTTGGGTTGAGCCAGGTTCAGATTTTGCATGGGAAGGCAGTGTGTTGACACTTCTAGTTTCTGTGAATATTTATTTGTCTATAGGTTATAATCTGATTTCTATTCACTCGATGTGTTTCTAATAGTGGCGGCC
TTAGCTATTCTTCACCCTTCCAATTCTTCCCCTGCTCATTTTGGTGTGTAATGCTTGTCGTTTTGGGAGGATTACTAATCTTCCAGATAGATTATTGCCGCGAACCATAGTTATTCATTTTGGATATATTTACTTAGAATTTGCAACAACACAGGATCCTCAGTCTCTGTTTTGAAAAGAGAATTCTTTCAAGACTCATA
TTTGTTCTGTTTTGAACAAAGTTAAACAAAGTGGCTGCAATTCAGTTTCTGGTTTGTTACATGCATATATTTCATAATCAGCATATATTGTATACTGGATTTTGTGCATGTATAGGATCTTATCTCTAATGTCTGTGGCAGAGCATTAAAGTGATGAATGAGAATAAAGTCACTTCTTTCTT
>TRINITY_DN111745_c0_g1_i6 from sample A2 / Example unspliced isoform:TTAAACAGCGTCCGATGCCTTTTGTTTTATCAATTTGCTCGAAATAGCTGTTTTTTTGGGAAAATACCCAGGGTTTGATCCTGATTTTGAGTTGCTTAATACTGAAGACTGATCCCGGAACGCTCGGCGGAGCCAAATGAGGCTTTGAACGGTCTGAACGGGTCCTTGTGTCTGCTGGTTCGGTTAACCCTGTAAAGCTG
GAGACAACAGATAAGTTTGTGGCCAGAGTTTGATGAGATTGGGGCTGACGTTTCTAGGTTTTGGATGTGAGCAGTCGAGATCTTGAAGCAGCCCTCATGGAGGACTTTTACAGTCGCCCGGGGGAAGAAGTCCTCTCTAGGGACTTTAATGCAAATGCTAAGCAGTATGGAACGGAACTGGCTTCCTCGGGGTCTTCGCT
GACGCCTTCAGCGTCTTTTAGAACGGATGTCAAGGGGAGCAAGAAGAAAACCTCGATAAGGCCCAGTCTGGAGGGGGATGACATATTTCATTATTTACATGGCTCTGATCAAATTAAGGTTGAGCTCAACCGGCTTGAAAATGAAGTAAGAGATAAGGATCGTGAATTAGCAGAAGCTCAGGCAGAAATCAAGGCTTTGA
GGTTGACAGAGCGCATGAAAGAAAAGGCAGTCGAAGAGCTCACGGATGAACTGGCGAAAGTAGACGAGAAGCTGAAGAACTGCGAAGCTTCTCTTGAAAGCAAGGCATGTTTATAGGAACTTTCAAAGGCTTCTAGTTGAATTTTATGTTTTGGAAACTTTGCTTGATATTATGTGCCATTGAATGCTTCCTGTGTTAGA
CTGGTTTGTGAATGATTGATATTCTGAATTCAAATTTTACAGAACCTTGAAATCAAGAAAATTAATGACGAGAAGAAAGCAGCATTGGCTGGCCAATTTGCAGCAGAAGCAACTCTGAGAAGAGTCCATGGTGCTCAAAAGGATGATGACATGCCACCAATTGAAGCTATTCTTGCTCCACTTGAAGCAGAACTCAAGCT
TGCACGACAAGAGgtatcattagatggcagaacctatgctgtcacatttatatgctgctattttactactccgttgtctctgctttggaattggcctatgtttgcacttgctcttagtcttctagtgtttaagaaggttgttggttttggcagATTTCAAAATTGCAGGAGGATAACAGGGCTTTAGAACGACTTACAAA
GTCCAAAGAAGCAGCCCTCCTTGAAGCAGAGAGGACAGTGCAGTTTGCTCTGGCAAAAGCTTCAATGGTTGATGATTTGCAGAATAGGAACCAGGAGTTGATGAAACAGATTGAGATTTGCCAGGAGGAGAACAAAATATTGGACAAAATGCATCGGCAGAAGGTTGCAGAGGTTGAGAAGCTATGTCAAACAGTTCGTG
AACTAGAGGAGGCTGTCCTTTCAGGTGGTGCTGCTGCCAATGCTGTGCGTGATTATCAGCGGCAAGTGAATACATTGATTGAAGGTAAGAAGACACTTGAGAGAGAACTCTCTCGGGCAAAGATAACGGCAAATCGAGTTGCATGCGTTGTTGCAAATGAATGGAAAGATGGGAATGACAAAGTCATGCCTGTAAAGCAG
TGGCTTGAAGAACGTCATTTCCTGCAGGGTGAAATGCGGCAGCTTCGCGATAAATTAGCCATTGCAGAGCGGACTGCAAAAAGTGAAGCGGCACTTAAGGAGAAATATCAACTACGGTTGAAAGTAGTTGAAGAAGGAATAAGAGGATCACCAAATGGCGCTATTCGGCCATCCTCCTCCGATGGACGAAGTATCAGCAA
TGGTCCATCTCGCCGCCAATCAATTGGTGGTGCGGAGATTGCATCAAGAGTCATGTCAAATGGTTTTGGTCCAAGGAGATCATCACTTTCTCAAATGAGGGCTTCACTGTCCGGTAATGCCAGTACAGTTTTAAAGAGCGCCAAGGGAACATCTAGGTCATTTGATGGTGGAAGATCATTTGATGGGGGTAGATCAATTG
AACGCAACAAGACATTTACAAATGGACTCAGTGAGAACCGCACAACTAACAAAAGTAATGGGGTATCCAGAAATGCCGAATCACATGATTCTGGGAAAGAGAATTCAGATAGCAAACCACCTGAATTTACAGAAGTTGGTCCTGATGATTCTGTTTCAGGTGTGTTGTATGACATGTTGCAAAAGGAGGTGATAGCCTTG
AGAAAAGCTGCCAATGAAAAGGATCAAAGTCTTAAAGACAAGGATGATGCAATAGAGATGCTAGCAAAGAAAGTCGATACTTTGACAAAAGCAATGGAGGTAGAGGCAAAGAAAATGCGCAGAGAAGTAGCTGCCATGGAGAAAGAGGTAGCTTCAATGAGGATAGATAAGGAGCATGATCAAAGAGCAAGGCGCTTGAG
TAGTTCGAGGGGAACTGTAAATAGCTCTCAGCTACTTTCCTCTGGCAGAAGTATGAGACACTCTTAAATTGTGCCCGGGTGTCAGGAATGCAAGCAAACTTGGCCTAATTTTCCAATGTAATGCCTATGCACAATCATTTTGGACAGAAACTGAATGTAGTGTTCAAAAGGATTATCAAACACAGTCACTTGCATGGCAG
TACATTACAGTGTCACAGATGAGAATGTGAAGGTGTCTGGTTGAGTAAACTATTAACTAACTATATTGCATGTGTGGCACTACTGGAAAAATCCAAGTACATATGGCTTGTGCATACACAGACGATGAGTTGAAGGCATGGTATACAAGCTCATATGTTTACAAAGCAGACTGCTGGCATTGAATTGAGGTGGAAGGCTG
AGCTTGTTCACATTTTGGGTTTATCTTTTGTGCTGTGTTGTCAACTTATCGCTATTGACTAGTCTCTAGGTTTATGTAATATGTTGTGCTACTTGGGTTGAGCCAGGTTCAGATTTTGCATGGGAAGGCAGTGTGTTGACACTTCTAGTTTCTGTGAATATTTATTTGTCTATAGGTTATAATCTGATTTCTATTCACTC
GATGTGTTTCTAATAGTGGCGGCCTTAGCTATTCTTCACCCTTCCAATTCTTCCCCTGCTCATTTTGGTGTGTAATGCTTGTCGTTTTGGGAGGATTACTAATCTTCCAGATAGATTATTGCCGCGAACCATAGTTATTCATTTTGGATATATTTACTTAGAATTTGCAACAACACAGGATCCTCAGTCTCTGTTTTGAA
AAGAGAATTCTTTCAAGACTCATATTTGTTCTGTTTTGAACAAAGTTAAACAAAGTGGCTGCAATTCAGTTTCTGGTTTGTTACATGCATATATTTCATAATCAGCATATATTGTATACTGGATTTTGTGCATGTATAGGATCTTATCTCTAATGTCTGTGGCAGAGCATTAAAGTGATGAATGAGAATAAAGTCACTTC
TTTCTT
Intron 4 GTAATGTAGT ... TGATTTCTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 47.57 | 70 | 74 | 53 |
| A2 | 52.2 | 49 | 44 | 63 |
| A3 | 46.72 | 69 | 66 | 55 |
| A4 | 42.86 | 44 | 32 | 34 |
| A5 | 56.03 | 31 | 36 | 43 |
| A6 | 60 | 3 | 4 | 5 |
| A7 | 53.19 | 11 | 13 | 12 |
| A8 | 23.08 | 5 | 2 | 1 |
| A9 | 46.67 | 16 | 7 | 21 |
| A10 | 41.54 | 19 | 11 | 16 |
>TRINITY_DN117640_c0_g3_i6 from sample A1 / Example spliced isoformGCGCTGTGGTAAAATGGTAGAGTTACCCCGCGGTGCTGAGAGATGAAAGTGAAACAAGCTGGCCCGGTAAAACTTTGCCGGCCCAACTTACCAAGCACGCGTCTGACATTGGCCCTCCCTCCCTCACCAAAGAATTCAGACAAGCGAGTTCATACGAACCGTTATGTTATGTTAAGACAAAATATATTACATTAAGCCTA
ACAGTCTGACTGTCACTCGACACCTGTTTAGATTCAGACTAAACCGAACAGAATAGAAAGGAACAGCGTCGAGGACGACGGGGGAGAGACCGCTAAGGCTTCTGCAGGAGCTTCAAGATCCGGGAGCTCGACGGTCGGAGGTTCAAAATAAGCTATTTAATGATGGAAGCTGTGGATTTTGAGTCATTAATGGTGAAGCT
GATCATTTCGAGCCTTCTAACGGTGTAAGCTGGTGATTTGGAGGGAGAAAACTGGTGATTTCGAGCTATTTGACGGTGAAAACTGAATATTTTGAGCTTTTTTGGTAAAGATTCCTGCTAGAAGCGGTACTGGAGCCGAATGAATCCATGAACGGTTTAAACAGCGTCCGATGCCTTTTGTTTTATCAATTTGCTCGAAA
TAGCTGTTTTTTTGGGAAAATACCCAGGGTTTGATCCTGATTTTGAGTTGCTTAATACTGAAGACTGATCCCGGAACGCTCGGCGGAGCCAAATGAGGCTTTGAACGGTCTGAACGGGTCCTTGTGTCTGCTGGTTCGGTTAACCCTGTAAAGCTGGAGACAACAGATAAGTTTGTGGCCAGACTTTGATGAGATTGGGG
CTGACGTTTCTAGGTTTTGGATGTGAGCAGTCGAGATCTTGAAGCAGCCCTCATGGAGGACTTTTACAGTCGCCCGGGGGAAGAAGTCCTCTCTAGGGACTTTAATGCAAATGCTAAGCAGTATGGAACGGAACTGGCTTCCTCGGGGTCTTCGCTGACGCCTTCAGCGTCTTTTAGAACGGATGTCAAGGGGAGCAAGA
AGAAAACCTCGATAAGGCCCAGTCTGGAGGGGGATGACATATTTCATTATTTACATGGCTCTGATCCAATTAAGGTTGAGCTCAACCGGCTTGAAAATGAAGTAAGAGATAAGGATCGTGAATTAGCAGAAGCTCAGGCAGAAATCAAGGCTTTGAGGTTGACAGAGCGCATGAAAGAAAAGGCAGTCGAAGAGCTCACG
GATGAACTGGCGAAAGTAGACGAGAAGCTGAAGAACTGCGAAGCTTCTCTTGAAAGCAAGAACCTTGAAATCAAGAAAATTAATGACGAGAAGAAAGCAGCATTGGCTGGCCAATTTGCAGCAGAAGCAACTCTGAGAAGAGTCCATGGTGCTCAAAAGGATGATGACATGCCACCAATTGAAGCTATTCTTGCTCCACT
TGAAGCAGAACTCAAGCTTGCACGACAAGAGATTTCAAAATTGCAGGAGGATAACAGGGCTTTAGAACGACTTACAAAGTCCAAAGAAGCAGCCCTCCTTGAAGCAGAGAGGACAGTGCAGTTTGCTCTGGCAAAAGCTTCAATGGTTGATGATTTGCAGAATAGGAACCAGGAGTTGATGAAACAGATTGAGATTTGCC
AGGAGGAGAACAAAATATTGGACAAAATGCATCGGCAGAAGGTTGCAGAGGTTGAGAAGCTATGTCAAACAGTTCGTGAACTAGAGGAGGCTGTCCTTTCAGGTGGTGCTGCTGCCAATGCTGTGCGTGATTATCAGCGGCAAGTGAATACATTGATTGAAGGTAAGAAGACACTTGAGAGAGAACTCTCTCGGGCAAAG
ATAACGGCAAATCGAGTTGCATGCGTTGTTGCAAATGAATGGAAAGATGGGAATGACAAAGTCATGCCTGTAAAGCAGTGGCTTGAAGAACGTCATTTCCTGCAGGGTGAAATGCGGCAGCTTCGCGATAAATTAGCCATTGCAGAGCGGACTGCAAAAAGTGAAGCGGCACTTAAGGAGAAATATCAACTACGGTTGAA
AGTAGTTGAAGAAGGAATAAGAGGATCACCAAATGGCGCTATTCGGCCATCCTCCTCCGATGGACGAAGTATCAGCAATGGTCCATCTCGCCGCCAATCAATTGGTGGTGCGGAGATTGCATCAAGAGTCATGTCAAATGGTTTTGGTCCAAGGAGATCATCACTTTCTCAAATGAGGGCTTCACTGTCCGGTAATGCCA
GTACAGTTTTAAAGAGCGCCAAGGGAACATCTAGGTCATTTGATGGTGGAAGATCATTTGATGGGGGTAGATCAATTGAACGCAACAAGACATTTACAAATGGACTCAGTGAGAACCGCACAACTAACAAAAGTAATGGGGTATCCAGAAATGCCGAATCACATGATTCTGGGAAAGAGAATTCAGATAGCAAACCACCT
GAATTTACAGAAGTTGGTCCTGATGATTCTGTTTCAGGTGTGTTGTATGACATGTTGCAAAAGGAGGTGATAGCCTTGAGAAAAGCTGCCAATGAAAAGGATCAAAGTCTTAAAGACAAGGATGATGCAATAGAGATGCTAGCAAAGAAAGTCGATACTTTGACAAAAGCAATGGAGGTAGAGGCAAAGAAAATGCGCAG
AGAAGTAGCTGCCATGGAGAAAGAGGTAGCTTCAATGAGGATAGATAAGGAGCATGATCAAAGAGCAAGGCGCTTGAGTAGTTCGAGGGGAACTGTAAATAGCTCTCAGCTACTTTCCTCTGGCAGAAGTATGAGACACTCTTAAATTGTGCCCGGGTGTCAGGAATGCAAGCAAACTTGGCCTAATTTTCCAATGTAAT
GCCTATGCACAATCATTTTGGACAGAAACTGAATGTAGTGTTCAAAAGGATTATCAAACACAGTCACTTGCATGGCAGTACATTACAGTGTCACAGATGAGAATGTGAAGGTGTCTGGTTGAGTAAACTATTAACTAACTATATTGCATGTGTGGCACTACTGGAAAAATCCAAGTACATATGGCTTGTGCATACACAGA
CGATGAGTTGAAGGCATGGTATACAAGCTCATATGTTTACAAAGCAGACTGCTGGCATTGAATTGAGGTGGAAGGCTGAGCTTGTTCACATTTTGGGTTTATCTTTTGTGCTGTGTTGTCAACTTATCGCTATTGACTAGTCTCTAGGTTTATGTAATATGTTGTGCTACTTGGGTTGAGCCAGGTTCAGATTTTGCATG
GGAAGGCAGTGTGTTGACACTTCTAGTTTCTGTGAATATTTATTTGTCTATAGGTTATAATCTGATTTCTATTCACTCGATGTGTTTCTAATAGTGGCGGCCTTAGCTATTCTTCACCCTTCCAATTCTTCCCCTGCTCATTTTGGTGTGTAATGCTTGTCGTTTTGGGAGGATTACTAATCTTCCAGATAGATTATTGC
CGCGAACCATAGTTATTCATTTTGGATATATTTACTTAGAATTTGCAACAACACAGGATCCTCAGTCTCTGTTTTGAAAAGAGAATTCTTTCAAGACTCATATTTGTTCTGTTTTGAACAAAGTTAAACAAAGTGGCTGCAATTCAGTTTCTGGTTTGTTACATGCATATATTTCATAATCAGCATATATTGTATACTGG
ATTTTGTGCATGTATAGGATCTTATCTCTAATGTCTGTGGCAGAGCATTAAAGTGATGAATGAGAATAAAGTCACTTCTTTCTTTCTTGGAAGTTAAAATGTCAGATATGGAAAGCACAGCACTAAAAGTTGTCACTATGTTTAGATGAAAGACGTCTGCTTCAGTAATTGTAAAAGCCCTCACATAGAATAATGGACA
>TRINITY_DN117640_c0_g3_i4 from sample A1 / Example unspliced isoform:GCGCTGTGGTAAAATGGTAGAGTTACCCCGCGGTGCTGAGAGATGAAAGTGAAACAAGCTGGCCCGGTAAAACTTTGCCGGCCCAACTTACCAAGCACGCGTCTGACATTGGCCCTCCCTCCCTCACCAAAGAATTCAGACAAGCGAGTTCATACGAACCGTTATGTTATGTTAAGACAAAATATATTACATTAAGCCTA
ACAGTCTGACTGTCACTCGACACCTGTTTAGATTCAGACTAAACCGAACAGAATAGAAAGGAACAGCGTCGAGGACGACGGGGGAGAGACCGCTAAGGCTTCTGCAGGAGCTTCAAGATCCGGGAGCTCGACGGTCGGAGGTTCAAAATAAGgtaatgtagttcattttttgaagaaatttatcggtcaaatctcttgaa
gcggcggtaattttgctgaaatgcgaaaattcccttgatttctagCTATTTAATGATGGAAGCTGTGGATTTTGAGTCATTAATGGTGAAGCTGATCATTTCGAGCCTTCTAACGGTGTAAGCTGGTGATTTGGAGGGAGAAAACTGGTGATTTCGAGCTATTTGACGGTGAAAACTGAATATTTTGAGCTTTTTTGGTA
AAGATTCCTGCTAGAAGCGGTACTGGAGCCGAATGAATCCATGAACGGTTTAAACAGCGTCCGATGCCTTTTGTTTTATCAATTTGCTCGAAATAGCTGTTTTTTTGGGAAAATACCCAGGGTTTGATCCTGATTTTGAGTTGCTTAATACTGAAGACTGATCCCGGAACGCTCGGCGGAGCCAAATGAGGCTTTGAACG
GTCTGAACGGGTCCTTGTGTCTGCTGGTTCGGTTAACCCTGTAAAGCTGGAGACAACAGATAAGTTTGTGGCCAGACTTTGATGAGATTGGGGCTGACGTTTCTAGGTTTTGGATGTGAGCAGTCGAGATCTTGAAGCAGCCCTCATGGAGGACTTTTACAGTCGCCCGGGGGAAGAAGTCCTCTCTAGGGACTTTAATG
CAAATGCTAAGCAGTATGGAACGGAACTGGCTTCCTCGGGGTCTTCGCTGACGCCTTCAGCGTCTTTTAGAACGGATGTCAAGGGGAGCAAGAAGAAAACCTCGATAAGGCCCAGTCTGGAGGGGGATGACATATTTCATTATTTACATGGCTCTGATCCAATTAAGGTTGAGCTCAACCGGCTTGAAAATGAAGTAAGA
GATAAGGATCGTGAATTAGCAGAAGCTCAGGCAGAAATCAAGGCTTTGAGGTTGACAGAGCGCATGAAAGAAAAGGCAGTCGAAGAGCTCACGGATGAACTGGCGAAAGTAGACGAGAAGCTGAAGAACTGCGAAGCTTCTCTTGAAAGCAAGAACCTTGAAATCAAGAAAATTAATGACGAGAAGAAAGCAGCATTGGC
TGGCCAATTTGCAGCAGAAGCAACTCTGAGAAGAGTCCATGGTGCTCAAAAGGATGATGACATGCCACCAATTGAAGCTATTCTTGCTCCACTTGAAGCAGAACTCAAGCTTGCACGACAAGAGATTTCAAAATTGCAGGAGGATAACAGGGCTTTAGAACGACTTACAAAGTCCAAAGAAGCAGCCCTCCTTGAAGCAG
AGAGGACAGTGCAGTTTGCTCTGGCAAAAGCTTCAATGGTTGATGATTTGCAGAATAGGAACCAGGAGTTGATGAAACAGATTGAGATTTGCCAGGTTTCCTCTCTGGGATTTGGATTTTAGATTTTTGTTTTAGTTGATGAAATAATGTTGTTTTGGTGGAGCTTAGGTTTCATATATGATAAACATTTTGGGAAGTTG
GCTGGTATGGTTTTGTCTTGACAGTTATGGTCAATTATGTTACAGGAGGAGAACAAAATATTGGACAAAATGCATCGGCAGAAGGTTGCAGAGGTTGAGAAGCTATGTCAAACAGTTCGTGAACTAGAGGAGGCTGTCCTTTCAGGTGGTGCTGCTGCCAATGCTGTGCGTGATTATCAGCGGCAAGTGAATACATTGAT
TGAAGGTAAGAAGACACTTGAGAGAGAACTCTCTCGGGCAAAGATAACGGCAAATCGAGTTGCATGCGTTGTTGCAAATGAATGGAAAGATGGGAATGACAAAGTCATGCCTGTAAAGCAGTGGCTTGAAGAACGTCATTTCCTGCAGGGTGAAATGCGGCAGCTTCGCGATAAATTAGCCATTGCAGAGCGGACTGCAA
AAAGTGAAGCGGCACTTAAGGAGAAATATCAACTACGGTTGAAAGTAGTTGAAGAAGGAATAAGAGGATCACCAAATGGCGCTATTCGGCCATCCTCCTCCGATGGACGAAGTATCAGCAATGGTCCATCTCGCCGCCAATCAATTGGTGGTGCGGAGATTGCATCAAGAGTCATGTCAAATGGTTTTGGTCCAAGGAGA
TCATCACTTTCTCAAATGAGGGCTTCACTGTCCGGTAATGCCAGTACAGTTTTAAAGAGCGCCAAGGGAACATCTAGGTCATTTGATGGTGGAAGATCATTTGATGGGGGTAGATCAATTGAACGCAACAAGACATTTACAAATGGACTCAGTGAGAACCGCACAACTAACAAAAGTAATGGGGTATCCAGAAATGCCGA
ATCACATGATTCTGGGAAAGAGAATTCAGATAGCAAACCACCTGAATTTACAGAAGTTGGTCCTGATGATTCTGTTTCAGGTGTGTTGTATGACATGTTGCAAAAGGAGGTGATAGCCTTGAGAAAAGCTGCCAATGAAAAGGATCAAAGTCTTAAAGACAAGGATGATGCAATAGAGATGCTAGCAAAGAAAGTCGATA
CTTTGACAAAAGCAATGGAGGTAGAGGCAAAGAAAATGCGCAGAGAAGTAGCTGCCATGGAGAAAGAGGTAGCTTCAATGAGGATAGATAAGGAGCATGATCAAAGAGCAAGGCGCTTGAGTAGTTCGAGGGGAACTGTAAATAGCTCTCAGCTACTTTCCTCTGGCAGAAGTATGAGACACTCTTAAATTGTGCCCGGG
TGTCAGGAATGCAAGCAAACTTGGCCTAATTTTCCAATGTAATGCCTATGCACAATCATTTTGGACAGAAACTGAATGTAGTGTTCAAAAGGATTATCAAACACAGTCACTTGCATGGCAGTACATTACAGTGTCACAGATGAGAATGTGAAGGTGTCTGGTTGAGTAAACTATTAACTAACTATATTGCATGTGTGGCA
CTACTGGAAAAATCCAAGTACATATGGCTTGTGCATACACAGACGATGAGTTGAAGGCATGGTATACAAGCTCATATGTTTACAAAGCAGACTGCTGGCATTGAATTGAGGTGGAAGGCTGAGCTTGTTCACATTTTGGGTTTATCTTTTGTGCTGTGTTGTCAACTTATCGCTATTGACTAGTCTCTAGGTTTATGTAA
TATGTTGTGCTACTTGGGTTGAGCCAGGTTCAGATTTTGCATGGGAAGGCAGTGTGTTGACACTTCTAGTTTCTGTGAATATTTATTTGTCTATAGGTTATAATCTGATTTCTATTCACTCGATGTGTTTCTAATAGTGGCGGCCTTAGCTATTCTTCACCCTTCCAATTCTTCCCCTGCTCATTTTGGTGTGTAATGCT
TGTCGTTTTGGGAGGATTACTAATCTTCCAGATAGATTATTGCCGCGAACCATAGTTATTCATTTTGGATATATTTACTTAGAATTTGCAACAACACAGGATCCTCAGTCTCTGTTTTGAAAAGAGAATTCTTTCAAGACTCATATTTGTTCTGTTTTGAACAAAGTTAAACAAAGTGGCTGCAATTCAGTTTCTGGTTT
GTTACATGCATATATTTCATAATCAGCATATATTGTATACTGGATTTTGTGCATGTATAGGATCTTATCTCTAATGTCTGTGGCAGAGCATTAAAGTGATGAATGAGAATAAAGTCACTTCTTTCTTTCTTGGAAGTTAAAATGTCAGATATGGAAAGCACAGCACTAAAAGTTGTCACTATGTTTAGATGAAAGACGTC
TGCTTCAGTAATTGTAAAAGCCCTCACATAGAATAATGGACA
Intron 5 GTTTCCTCTC ... TATGTTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 25.71 | 65 | 19 | 26 |
| A2 | 25.3 | 62 | 24 | 18 |
| A3 | 29.51 | 43 | 12 | 24 |
| A4 | 27.43 | 41 | 18 | 13 |
| A5 | 29.41 | 30 | 14 | 11 |
| A6 | 16.13 | 13 | 2 | 3 |
| A7 | 19.33 | 48 | 10 | 13 |
| A8 | 22.67 | 29 | 11 | 6 |
| A9 | 17.78 | 37 | 7 | 9 |
| A10 | 24.92 | 73.8 | 12 | 37 |
>TRINITY_DN117640_c0_g3_i11 from sample A1 / Example spliced isoformATAAGGATCGTGAATTAGCAGAAGCTCAGGCAGAAATCAAGGCTTTGAGGTTGACAGAGCGCATGAAAGAAAAGGCAGTCGAAGAGCTCACGGATGAACTGGCGAAAGTAGACGAGAAGCTGAAGAACTGCGAAGCTTCTCTTGAAAGCAAGAACCTTGAAATCAAGAAAATTAATGACGAGAAGAAAGCAGCATTGGCT
GGCCAATTTGCAGCAGAAGCAACTCTGAGAAGAGTCCATGGTGCTCAAAAGGATGATGACATGCCACCAATTGAAGCTATTCTTGCTCCACTTGAAGCAGAACTCAAGCTTGCACGACAAGAGATTTCAAAATTGCAGGAGGATAACAGGGCTTTAGAACGACTTACAAAGTCCAAAGAAGCAGCCCTCCTTGAAGCAGA
GAGGACAGTGCAGTTTGCTCTGGCAAAAGCTTCAATGGTTGATGATTTGCAGAATAGGAACCAGGAGTTGATGAAACAGATTGAGATTTGCCAGGAGGAGAACAAAATATTGGACAAAATGCATCGGCAGAAGGTTGCAGAGGTTGAGAAGCTATGTCAAACAGTTCGTGAACTAGAGGAGGCTGTCCTTTCAGGTGGTG
CTGCTGCCAATGCTGTGCGTGATTATCAGCGGCAAGTGAATACATTGATTGTAAGTCCTGCCATGCCATATACTTTTACAGTTTTTCTATTAAATGAAACATTTCTTATTTTGGTTAAGTGATCATTTCAAATGGTTCAATTTGCATTCATATCCATACATGGTGCT
>TRINITY_DN117640_c0_g3_i1 from sample A1 / Example unspliced isoform:GCGCTGTGGTAAAATGGTAGAGTTACCCCGCGGTGCTGAGAGATGAAAGTGAAACAAGCTGGCCCGGTAAAACTTTGCCGGCCCAACTTACCAAGCACGCGTCTGACATTGGCCCTCCCTCCCTCACCAAAGAATTCAGACAAGCGAGTTCATACGAACCGTTATGTTATGTTAAGACAAAATATATTACATTAAGCCTA
ACAGTCTGACTGTCACTCGACACCTGTTTAGATTCAGACTAAACCGAACAGAATAGAAAGGAACAGCGTCGAGGACGACGGGGGAGAGACCGCTAAGGCTTCTGCAGGAGCTTCAAGATCCGGGAGCTCGACGGTCGGAGGTTCAAAATAAGCTATTTAATGATGGAAGCTGTGGATTTTGAGTCATTAATGGTGAAGCT
GATCATTTCGAGCCTTCTAACGGTGTAAGCTGGTGATTTGGAGGGAGAAAACTGGTGATTTCGAGCTATTTGACGGTGAAAACTGAATATTTTGAGCTTTTTTGGTAAAGATTCCTGCTAGAAGCGGTACTGGAGCCGAATGAATCCATGAACGGTTTAAACAGCGTCCGATGCCTTTTGTTTTATCAATTTGCTCGAAA
TAGCTGTTTTTTTGGGAAAATACCCAGGGTTTGATCCTGATTTTGAGTTGCTTAATACTGAAGACTGATCCCGGAACGCTCGGCGGAGCCAAATGAGGCTTTGAACGGTCTGAACGGGTCCTTGTGTCTGCTGGTTCGGTTAACCCTGTAAAGCTGGAGACAACAGATAAGTTTGTGGCCAGACTTTGATGAGATTGGGG
CTGACGTTTCTAGGTTTTGGATGTGAGCAGTCGAGATCTTGAAGCAGCCCTCATGGAGGACTTTTACAGTCGCCCGGGGGAAGAAGTCCTCTCTAGGGACTTTAATGCAAATGCTAAGCAGTATGGAACGGAACTGGCTTCCTCGGGGTCTTCGCTGACGCCTTCAGCGTCTTTTAGAACGGATGTCAAGGGGAGCAAGA
AGAAAACCTCGATAAGGCCCAGTCTGGAGGGGGATGACATATTTCATTATTTACATGGCTCTGATCCAATTAAGGTTGAGCTCAACCGGCTTGAAAATGAAGTAAGAGATAAGGATCGTGAATTAGCAGAAGCTCAGGCAGAAATCAAGGCTTTGAGGTTGACAGAGCGCATGAAAGAAAAGGCAGTCGAAGAGCTCACG
GATGAACTGGCGAAAGTAGACGAGAAGCTGAAGAACTGCGAAGCTTCTCTTGAAAGCAAGAACCTTGAAATCAAGAAAATTAATGACGAGAAGAAAGCAGCATTGGCTGGCCAATTTGCAGCAGAAGCAACTCTGAGAAGAGTCCATGGTGCTCAAAAGGATGATGACATGCCACCAATTGAAGCTATTCTTGCTCCACT
TGAAGCAGAACTCAAGCTTGCACGACAAGAGATTTCAAAATTGCAGGAGGATAACAGGGCTTTAGAACGACTTACAAAGTCCAAAGAAGCAGCCCTCCTTGAAGCAGAGAGGACAGTGCAGTTTGCTCTGGCAAAAGCTTCAATGGTTGATGATTTGCAGAATAGGAACCAGGAGTTGATGAAACAGATTGAGATTTGCC
AGgtttcctctctgggatttggattttagatttttgttttagttgatgaaataatgttgttttggtggagcttaggtttcatatatgataaacattttgggaagttggctggtatggttttgtcttgacagttatggtcaattatgttacagGAGGAGAACAAAATATTGGACAAAATGCATCGGCAGAAGGTTGCAGAG
GTTGAGAAGCTATGTCAAACAGTTCGTGAACTAGAGGAGGCTGTCCTTTCAGGTGGTGCTGCTGCCAATGCTGTGCGTGATTATCAGCGGCAAGTGAATACATTGATTGAAGGTAAGAAGACACTTGAGAGAGAACTCTCTCGGGCAAAGATAACGGCAAATCGAGTTGCATGCGTTGTTGCAAATGAATGGAAAGATGG
GAATGACAAAGTCATGCCTGTAAAGCAGTGGCTTGAAGAACGTCATTTCCTGCAGGGTGAAATGCGGCAGCTTCGCGATAAATTAGCCATTGCAGAGCGGACTGCAAAAAGTGAAGCGGCACTTAAGGAGAAATATCAACTACGGTTGAAAGTAGTTGAAGAAGGAATAAGAGGATCACCAAATGGCGCTATTCGGCCAT
CCTCCTCCGATGGACGAAGTATCAGCAATGGTCCATCTCGCCGCCAATCAATTGGTGGTGCGGAGATTGCATCAAGAGTCATGTCAAATGGTTTTGGTCCAAGGAGATCATCACTTTCTCAAATGAGGGCTTCACTGTCCGGTAATGCCAGTACAGTTTTAAAGAGCGCCAAGGGAACATCTAGGTCATTTGATGGTGGA
AGATCATTTGATGGGGGTAGATCAATTGAACGCAACAAGACATTTACAAATGGACTCAGTGAGAACCGCACAACTAACAAAAGTAATGGGGTATCCAGAAATGCCGAATCACATGATTCTGGGAAAGAGAATTCAGATAGCAAACCACCTGAATTTACAGAAGTTGGTCCTGATGATTCTGTTTCAGGTGTGTTGTATGA
CATGTTGCAAAAGGAGGTGATAGCCTTGAGAAAAGCTGCCAATGAAAAGGATCAAAGTCTTAAAGACAAGGATGATGCAATAGAGATGCTAGCAAAGAAAGTCGATACTTTGACAAAAGCAATGGAGGTAGAGGCAAAGAAAATGCGCAGAGAAGTAGCTGCCATGGAGAAAGAGGTAGCTTCAATGAGGATAGATAAGG
AGCATGATCAAAGAGCAAGGCGCTTGAGTAGTTCGAGGGGAACTGTAAATAGCTCTCAGCTACTTTCCTCTGGCAGAAGTATGAGACACTCTTAAATTGTGCCCGGGTGTCAGGAATGCAAGCAAACTTGGCCTAATTTTCCAATGTAATGCCTATGCACAATCATTTTGGACAGAAACTGAATGTAGTGTTCAAAAGGA
TTATCAAACACAGTCACTTGCATGGCAGTACATTACAGTGTCACAGATGAGAATGTGAAGGTGTCTGGTTGAGTAAACTATTAACTAACTATATTGCATGTGTGGCACTACTGGAAAAATCCAAGTACATATGGCTTGTGCATACACAGACGATGAGTTGAAGGCATGGTATACAAGCTCATATGTTTACAAAGCAGACT
GCTGGCATTGAATTGAGGTGGAAGGCTGAGCTTGTTCACATTTTGGGTTTATCTTTTGTGCTGTGTTGTCAACTTATCGCTATTGACTAGTCTCTAGGTTTATGTAATATGTTGTGCTACTTGGGTTGAGCCAGGTTCAGATTTTGCATGGGAAGGCAGTGTGTTGACACTTCTAGTTTCTGTGAATATTTATTTGTCTA
TAGGTTATAATCTGATTTCTATTCACTCGATGTGTTTCTAATAGTGGCGGCCTTAGCTATTCTTCACCCTTCCAATTCTTCCCCTGCTCATTTTGGTGTGTAATGCTTGTCGTTTTGGGAGGATTACTAATCTTCCAGATAGATTATTGCCGCGAACCATAGTTATTCATTTTGGATATATTTACTTAGAATTTGCAACA
ACACAGGATCCTCAGTCTCTGTTTTGAAAAGAGAATTCTTTCAAGACTCATATTTGTTCTGTTTTGAACAAAGTTAAACAAAGTGGCTGCAATTCAGTTTCTGGTTTGTTACATGCATATATTTCATAATCAGCATATATTGTATACTGGATTTTGTGCATGTATAGGATCTTATCTCTAATGTCTGTGGCAGAGCATTA
AAGTGATGAATGAGAATAAAGTCACTTCTTTCTTTCTTGGAAGTTAAAATGTCAGATATGGAAAGCACAGCACTAAAAGTTGTCACTATGTTTAGATGAAAGACGTCTGCTTCAGTAATTGTAAAAGCCCTCACATAGAATAATGGACA
Intron 6 GTAATGTAGT ... TTTGGTAAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 56.7 | 63 | 74 | 91 |
| A2 | 73.08 | 21 | 44 | 70 |
| A3 | 59.85 | 55 | 66 | 98 |
| A4 | 66.67 | 28 | 32 | 80 |
| A5 | 67.65 | 22 | 36 | 56 |
| A6 | 73.91 | 3 | 4 | 13 |
| A7 | 66.67 | 13 | 13 | 39 |
| A8 | 60 | 3 | 2 | 7 |
| A9 | 68.42 | 9 | 7 | 32 |
| A10 | 61.04 | 15 | 11 | 36 |
>TRINITY_DN38722_c0_g1_i1 from sample A8 / Example spliced isoformAGTGGCGCTGTGGTAAAATGGTAGAGTTACCCCGCGGTGCTGAGAGATGAAAGTGAAACAAGCTGGCCCGGTAAAACTTTGCCGGCCCAACTTACCAAGCACGCGTCTGACATTGGCCCTCCCTCCCTCACCAAAGAATTCAGACAAGCGAGTTCATACGAACCGTTATGTTATGTTAAGACAAAATATATTACATTAAG
CCTAACAGTCTGACTGTCACTCGACACCTGTTTAGATTCAGACTAAACCGAACAGAATAGAAAGGAACAGCGTCGAGGACGACGGGGGAGAGACCGCTAAGGCTTCTGCAGGAGCTTCAAGATCCGGGAGCTCGACGGTCGGAGGTTCAAAATAAGATTCCTGCTAGAAGCGGTACTGGAGCCGAATGAATCCATGAACG
GTTTAAACAGCGTCCGATGCCTTTTGTTTTATCAATTTGCTCGAAATAGCTGTTTTTTTGGGAAAATACCCAGGGTTTGATCCTGATTTTGAGTTGCTTAATACTGAAGACTGATCCCGGAACGCTCGGCGGAGCCAAATGAGGCTTTGAACGGTCTGAACGGGTCCTTGTGTCTGCTGGTTCGGTTAACCCTGTAAAGC
TGGAGACAACAGATAAGTTTGTGGCCAGACTTTGATGAGATTGGGGCTGACGTTTCTAGGTTTTGGATGTGAGCAGTCGAGATCTTGAAGCAGCCCTCATGGAGGACTTTTACAGTCGCCCGGGGGAAGAAGTCCTCTCTAGGGACTTTAATGCAAATGCTAAGCAGTATGGAACGGAACTGGCTTCCTCGGGGTCTTCG
CTGACGCCTTCAGCGTCTTTTAGAACGGATGTCAAGGGGAGCAAGAAGAAAACCTCGATAAGGCCCAGTCTGGAGGGGGATGACATATTTCATTATTTACATGGCTCTGATCCAATTAAGGTTGAGCTCAACCGGCTTGAAAATGAAGTAAGAGATAAGGATCGTGAATTAGCAGAAGCTCAGGCAGAAATCAAGGCTTT
GAGGTTGACAGAGCGCATGAAAGAAAAGGCAGTCGAAGAGCTCACGGATGAACTGGCGAAAGTAGACGAGAAGCTGAAGAACTGCGAAGCTTCTCTTGAAAGCAAGAACCTTGAAATCAAGAAAATTAATGACGAGAAGAAAGCAGCATTGGCTGGCCAATTTGCAGCAGAAGCAACTCTGAGAAGAGTCCATGGTGCTC
AAAAGGATGATGACATGCCACCAATTGAAGCTATTCTTGCTCCACTTGAAGCAGAACTCAAGCTTGCACGACAAGAGATTTCAAAATTGCAGGAGGATAACAGGGCTTTAGAACGACTTACAAAGTCCAAAGAAGCAGCCCTCCTTGAAGCAGAGAGGACAGTGCAGTTTGCTCTGGCAAAAGCTTCAATGGTTGATGAT
TTGCAGAATAGGAACCAGGAGTTGATGAAACAGATTGAGATTTGCCAGGAGGAGAACAAAATATTGGACAAAATGCATCGGCAGAAGGTTGCAGAGGTTGAGAAGCTATGTCAAACAGTTCGTGAACTAGAGGAGGCTGTCCTTTCAGGTGGTGCTGCTGCCAATGCTGTGCGTGATTATCAGCGGCAAGTGAATACATT
GATTGAAGGTAAGAAGACACTTGAGAGAGAACTCTCTCGGGCAAAGATAACGGCAAATCGAGTTGCATGCGTTGTTGCAAATGAATGGAAAGATGGGAATGACAAAGTCATGCCTGTAAAGCAGTGGCTTGAAGAACGTCATTTCCTGCAGGGTGAAATGCGGCAGCTTCGCGATAAATTAGCCATTGCAGAGCGGACTG
CAAAAAGTGAAGCGGCACTTAAGGAGAAATATCAACTACGGTTGAAAGTAGTTGAAGAAGGAATAAGAGGATCACCAAATGGCGCTATTCGGCCATCCTCCTCCGATGGACGAAGTATCAGCAATGGTCCATCTCGCCGCCAATCAATTGGTGGTGCGGAGATTGCATCAAGAGTCATGTCAAATGGTTTTGGTCCAAGG
AGATCATCACTTTCTCAAATGAGGGCTTCACTGTCCGGTAATGCCAGTACAGTTTTAAAGAGCGCCAAGGGAACATCTAGGTCATTTGATGGTGGAAGATCATTTGATGGGGGTAGATCAATTGAACGCAACAAGACATTTACAAATGGACTCAGTGAGAACCGCACAACTAACAAAAGTAATGGGGTATCCAGAAATGC
CGAATCACATGATTCTGGGAAAGAGAATTCAGATAGCAAACCACCTGAATTTACAGAAGTTGGTCCTGATGATTCTGTTTCAGGTGTGTTGTATGACATGTTGCAAAAGGAGGTGATAGCCTTGAGAAAAGCTGCCAATGAAAAGGATCAAAGTCTTAAAGACAAGGATGATGCAATAGAGATGCTAGCAAAGAAAGTCG
ATACTTTGACAAAAGCAATGGAGGTAGAGGCAAAGAAAATGCGCAGAGAAGTAGCTGCCATGGAGAAAGAGGTAGCTTCAATGAGGATAGATAAGGAGCATGATCAAAGAGCAAGGCGCTTGAGTAGTTCGAGGGGAACTGTAAATAGCTCTCAGCTACTTTCCTCTGGCAGAAGTATGAGACACTCTTAAATTGTGCCC
GGGTGTCAGGAATGCAAGCAAACTTGGCCTAATTTTCCAATGTAATGCCTATGCACAATCATTTTGGACAGAAACTGAATGTAGTGTTCAAAAGGATTATCAAACACAGTCACTTGCATGGCAGTACATTACAGTGTCACAGATGAGAATGTGAAGGTGTCTGGTTGAGTAAACTATTAACTAACTATATTGCATGTGTG
GCACTACTGGAAAAATCCAAGTACATATGGCTTGTGCATACACAGACGATGAGTTGAAGGCATGGTATACAAGCTCATATGTTTACAAAGCAGACTGCTGGCATTGAATTGAGGTGGAAGGCTGAGCTTGTTCACATTTTGGGTTTATCTTTTGTGCTGTGTTGTCAACTTATCGCTATTGACTAGTCTCTAGGTTTATG
TAATATGTTGTGCTACTTGGGTTGAGCCAGGTTCAGATTTTGCATGGGAAGGCAGTGTGTTGACACTTCTAGTTTCTGTGAATATTTATTTGTCTATAGGTTATAATCTGATTTCTATTCACTCGATGTGTTTCTAATAGTGGCGGCCTTAGCTATTCTTCACCCTTCCAATTCTTCCCCTGCTCATTTTGGTGTGTAAT
GCTTGTCGTTTTGGGAGGATTACTAATCTTCCAGATAGATTATTGCCGCGAACCATAGTTATTCATTTTGGATATATTTACTTAGAATTTGCAACAACACAGGATCCTCAGTCTCTGTTTTGAAAAGAGAATTCTTTCAAGACTCATATTTGTTCTGTTTTGAACAAAGTTAAACAAAGTGGCTGCAATTCAGTTTCTGG
TTTGTTACATGCATATATTTCATAATCAGCATATATTGTATACTGGATTTTGTGCATGTATAGGATCTTATCTCTAATGTCTGTGGCAGAGCATTAAAGTGATGAATGAGAATAAAGTCACTTCTTTCTTTCTTGGAAGTTAAAATGTCAGATATGGAAAGCACAGCACTAAAAGTTGTCACTATGTTTAGATGAAAGAC
GTCTGCTTCAGTAATTGTAAAAGCCCTCACATAGAATAATGGACTAAATAAGTTCTTTTTGTTTCGAGTATTGTTTGATCATTAGATCGTGTCAGACAGCAATTGTCTTCACATAATGAGAAAATCTGTTCTGGAGTGGCTAGGAACATGTATCCAATATGCAAGCTCGCATTTTAAAGTTTGCCCAAAGCAAAGAAAAA
TGACAGTTTTTAATAGAACCTTGAGCAAGTTAAATTGTTTACAAGCATGCATGCTATATTTAATGGGTAAACATCTTATAATTCTTGCAGTCCTTTGTATGATTGATCTTTGACTCTATTTGTCATACCAGAGGGTTAAATCAATGCTCTTAAATTATGCAAAAGGTTGTGCCTTTATAATGTTGTTGGTTTAGCATATA
TTTCAGGTGTTGTTAT
>TRINITY_DN38722_c0_g1_i3 from sample A8 / Example unspliced isoform:AGTGGCGCTGTGGTAAAATGGTAGAGTTACCCCGCGGTGCTGAGAGATGAAAGTGAAACAAGCTGGCCCGGTAAAACTTTGCCGGCCCAACTTACCAAGCACGCGTCTGACATTGGCCCTCCCTCCCTCACCAAAGAATTCAGACAAGCGAGTTCATACGAACCGTTATGTTATGTTAAGACAAAATATATTACATTAAG
CCTAACAGTCTGACTGTCACTCGACACCTGTTTAGATTCAGACTAAACCGAACAGAATAGAAAGGAACAGCGTCGAGGACGACGGGGGAGAGACCGCTAAGGCTTCTGCAGGAGCTTCAAGATCCGGGAGCTCGACGGTCGGAGGTTCAAAATAAGgtaatgtagttcattttttgaagaaatttatcggtcaaatctct
tgaagcggcggtaattttgctgaaatgcgaaaattcccttgatttctagctatttaatgatggaagctgtggattttgagtcattaatggtgaagctgatcatttcgagccttctaacggtgtaagctggtgatttggagggagaaaactggtgatttcgagctatttgacggtgaaaactgaatattttgagctttttt
ggtaaagATTCCTGCTAGAAGCGGTACTGGAGCCGAATGAATCCATGAACGGTTTAAACAGCGTCCGATGCCTTTTGTTTTATCAATTTGCTCGAAATAGCTGTTTTTTTGGGAAAATACCCAGGGTTTGATCCTGATTTTGAGTTGCTTAATACTGAAGACTGATCCCGGAACGCTCGGCGGAGCCAAATGAGGCTTTG
AACGGTCTGAACGGGTCCTTGTGTCTGCTGGTTCGGTTAACCCTGTAAAGCTGGAGACAACAGATAAGTTTGTGGCCAGACTTTGATGAGATTGGGGCTGACGTTTCTAGGTTTTGGATGTGAGCAGTCGAGATCTTGAAGCAGCCCTCATGGAGGACTTTTACAGTCGCCCGGGGGAAGAAGTCCTCTCTAGGGACTTT
AATGCAAATGCTAAGCAGTATGGAACGGAACTGGCTTCCTCGGGGTCTTCGCTGACGCCTTCAGCGTCTTTTAGAACGGATGTCAAGGGGAGCAAGAAGAAAACCTCGATAAGGCCCAGTCTGGAGGGGGATGACATATTTCATTATTTACATGGCTCTGATCCAATTAAGGTTGAGCTCAACCGGCTTGAAAATGAAGT
AAGAGATAAGGATCGTGAATTAGCAGAAGCTCAGGCAGAAATCAAGGCTTTGAGGTTGACAGAGCGCATGAAAGAAAAGGCAGTCGAAGAGCTCACGGATGAACTGGCGAAAGTAGACGAGAAGCTGAAGAACTGCGAAGCTTCTCTTGAAAGCAAGAACCTTGAAATCAAGAAAATTAATGACGAGAAGAAAGCAGCAT
TGGCTGGCCAATTTGCAGCAGAAGCAACTCTGAGAAGAGTCCATGGTGCTCAAAAGGATGATGACATGCCACCAATTGAAGCTATTCTTGCTCCACTTGAAGCAGAACTCAAGCTTGCACGACAAGAGATTTCAAAATTGCAGGAGGATAACAGGGCTTTAGAACGACTTACAAAGTCCAAAGAAGCAGCCCTCCTTGAA
GCAGAGAGGACAGTGCAGTTTGCTCTGGCAAAAGCTTCAATGGTTGATGATTTGCAGAATAGGAACCAGGAGTTGATGAAACAGATTGAGATTTGCCAGGAGGAGAACAAAATATTGGACAAAATGCATCGGCAGAAGGTTGCAGAGGTTGAGAAGCTATGTCAAACAGTTCGTGAACTAGAGGAGGCTGTCCTTTCAGG
TGGTGCTGCTGCCAATGCTGTGCGTGATTATCAGCGGCAAGTGAATACATTGATTGAAGGTAAGAAGACACTTGAGAGAGAACTCTCTCGGGCAAAGATAACGGCAAATCGAGTTGCATGCGTTGTTGCAAATGAATGGAAAGATGGGAATGACAAAGTCATGCCTGTAAAGCAGTGGCTTGAAGAACGTCATTTCCTGC
AGGGTGAAATGCGGCAGCTTCGCGATAAATTAGCCATTGCAGAGCGGACTGCAAAAAGTGAAGCGGCACTTAAGGAGAAATATCAACTACGGTTGAAAGTAGTTGAAGAAGGAATAAGAGGATCACCAAATGGCGCTATTCGGCCATCCTCCTCCGATGGACGAAGTATCAGCAATGGTCCATCTCGCCGCCAATCAATT
GGTGGTGCGGAGATTGCATCAAGAGTCATGTCAAATGGTTTTGGTCCAAGGAGATCATCACTTTCTCAAATGAGGGCTTCACTGTCCGGTAATGCCAGTACAGTTTTAAAGAGCGCCAAGGGAACATCTAGGTCATTTGATGGTGGAAGATCATTTGATGGGGGTAGATCAATTGAACGCAACAAGACATTTACAAATGG
ACTCAGTGAGAACCGCACAACTAACAAAAGTAATGGGGTATCCAGAAATGCCGAATCACATGATTCTGGGAAAGAGAATTCAGATAGCAAACCACCTGAATTTACAGAAGTTGGTCCTGATGATTCTGTTTCAGGTGTGTTGTATGACATGTTGCAAAAGGAGGTGATAGCCTTGAGAAAAGCTGCCAATGAAAAGGATC
AAAGTCTTAAAGACAAGGATGATGCAATAGAGATGCTAGCAAAGAAAGTCGATACTTTGACAAAAGCAATGGAGGTAGAGGCAAAGAAAATGCGCAGAGAAGTAGCTGCCATGGAGAAAGAGGTAGCTTCAATGAGGATAGATAAGGAGCATGATCAAAGAGCAAGGCGCTTGAGTAGTTCGAGGGGAACTGTAAATAGC
TCTCAGCTACTTTCCTCTGGCAGAAGTATGAGACACTCTTAAATTGTGCCCGGGTGTCAGGAATGCAAGCAAACTTGGCCTAATTTTCCAATGTAATGCCTATGCACAATCATTTTGGACAGAAACTGAATGTAGTGTTCAAAAGGATTATCAAACACAGTCACTTGCATGGCAGTACATTACAGTGTCACAGATGAGAA
TGTGAAGGTGTCTGGTTGAGTAAACTATTAACTAACTATATTGCATGTGTGGCACTACTGGAAAAATCCAAGTACATATGGCTTGTGCATACACAGACGATGAGTTGAAGGCATGGTATACAAGCTCATATGTTTACAAAGCAGACTGCTGGCATTGAATTGAGGTGGAAGGCTGAGCTTGTTCACATTTTGGGTTTATC
TTTTGTGCTGTGTTGTCAACTTATCGCTATTGACTAGTCTCTAGGTTTATGTAATATGTTGTGCTACTTGGGTTGAGCCAGGTTCAGATTTTGCATGGGAAGGCAGTGTGTTGACACTTCTAGTTTCTGTGAATATTTATTTGTCTATAGGTTATAATCTGATTTCTATTCACTCGATGTGTTTCTAATAGTGGCGGCCT
TAGCTATTCTTCACCCTTCCAATTCTTCCCCTGCTCATTTTGGTGTGTAATGCTTGTCGTTTTGGGAGGATTACTAATCTTCCAGATAGATTATTGCCGCGAACCATAGTTATTCATTTTGGATATATTTACTTAGAATTTGCAACAACACAGGATCCTCAGTCTCTGTTTTGAAAAGAGAATTCTTTCAAGACTCATAT
TTGTTCTGTTTTGAACAAAGTTAAACAAAGTGGCTGCAATTCAGTTTCTGGTTTGTTACATGCATATATTTCATAATCAGCATATATTGTATACTGGATTTTGTGCATGTATAGGATCTTATCTCTAATGTCTGTGGCAGAGCATTAAAGTGATGAATGAGAATAAAGTCACTTCTTTCTTTCTTGGAAGTTAAAATGTC
AGATATGGAAAGCACAGCACTAAAAGTTGTCACTATGTTTAGATGAAAGACGTCTGCTTCAGTAATTGTAAAAGCCCTCACATAGAATAATGGACTAAATAAGTTCTTTTTGTTTCGAGTATTGTTTGATCATTAGATCGTGTCAGACAGCAATTGTCTTCACATAATGAGAAAATCTGTTCTGGAGTGGCTAGGAACAT
GTATCCAATATGCAAGCTCGCATTTTAAAGTTTGCCCAAAGCAAAGAAAAATGACAGTTTTTAATAGAACCTTGAGCAAGTTAAATTGTTTACAAGCATGCATGCTATATTTAATGGGTAAACATCTTATAATTCTTGCAGTCCTTTGTATGATTGATCTTTGACTCTATTTGTCATACCAGAGGGTTAAATCAATGCTC
TTAAATTATGCAAAAGGTTGTGCCTTTATAATGTTGTTGGTTTAGCATATATTTCAGGTGTTGTTAT