sp|Q9LUB6|SNE_ARATH ----> F-box protein SNE
Intron 1 GTTGAGTATG ... TGGTATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 50 | 18 | 7 | 18 |
| A2 | 60 | 16 | 0 | 24 |
| A3 | 54.17 | 22 | 3 | 26 |
| A4 | 60.34 | 12.5 | 6 | 19 |
| A5 | 53.69 | 8 | 2 | 9 |
| A6 | 51.34 | 63.5 | 8 | 67 |
| A7 | 49.59 | 91.5 | 6 | 90 |
| A8 | 45.27 | 52 | 7.5 | 43 |
| A9 | 48.14 | 90.5 | 2 | 84 |
| A10 | 49.72 | 88 | 3 | 87 |
>TRINITY_DN126966_c8_g1_i1 from sample A1 / Example spliced isoformGGGGGGAACAATCATTTAAAAGTCTCCACGGTGGCAAGTACATCTTCCATTTCTGTTGATTCTCAGGTGCCCTGCAGATGAGGGGTTTTCATTCTTGCAGGGTTTGGCTTAAAATTCAATGACATTTCTATTCGCAATGGCGGGGTCCGATCCTCGTAAAATTCGATAGAAAAAGCCGAGGGTTTGGCCGTATCAAGCAC
GTCAGAGATAATTGCAGTTGCAGAAAAAGTAGTAAGTTCGAATCTCGATGACTGCATTTGCCGTACAGTCCCAGGAAAAAAAATCCCCACCCAACCAAGCTTAAATTAAGGCTTGCGGGCCACCTGTTCCAGGGCTTGCGCTCTTTATTTCTGGCAGGGCCCGGGAGCCATTCAAGGGATTCATGCGAAATAATTTCGCA
GAGAGGTGGATTGCAATGAACACAGCAGAAAATGGCGAAGTGGCAGCCAGGACGAGTCCCCGAAGCGTTCTACCATCGTGGGAGCCGAGCGAATTGGCGAGGGAAAGGTCTCGAAGTGATCTTAAATTCACGGCCATCGAGGACAGACGGGACCTTAAAAGGCATTCGGTTTCAGGGGAAAAATGCGCGGAGAATGAAAA
AACCAGGGTTTCGTCTTTGAATTCGCGTGAATTTAACGAGTGCCGGAGAAAGAACAGCCATGGTGAGAATGCTCAGAGTTCTCGTGAATTCGCAGCTGGGGACTGCTGGAAACGTCAAAGGCATGGGCTTTTGGGGGAAAAATGCATGGAGGATGAAAAGGCCAGGGTTTCTTCTTTGACTTTGTGTCAATTTGATGAAC
GTGGAGCTCACAGGAGGAAGAAGAAGAAGAAAAAAGTGGAGGAGGACGAAATGGTTAGCGATCCGTTGGCGGTTTTTGGATCGGACCTAATGCTGACGATCTTGTATCGTCTGGATGCACGCAGCTTGGCACAGTCTATTTTGGTTTCTCGCGAATGGCAGGCATTGGCAGCCAGCGACTCTCTCTGGTCTAAAAAGATG
TCTAACAGCCTCATATTTATACAAGTGGTTATACTTTTTCTAGTCTCTGGACCTCCTGGATATGGCTTTTTGGACCAGATTGTGCAATGCCAAGCTACAAGAACAGTGTGGATTGAAACTGGAATTTGTCAATCTCAACTAGTTCCTTCTGTGCCTTTGATCTACAAGTACTGGGCCCTTCTCTGCAGTTTGTTAGTTGA
TTTCCTTTGACTTGTAATATATCATCTAATTTCTGTATAATCATGCATGTTGCAGTTGTTCGCATATTTTTTGATTGAGTTCTTTTCGCAGGTTTGATACAGGCAGCAGCATGAAATGTGAAGAGTTGTGGGCTGGCAAGGCACATCTCCCTCGAACAGCATTGCAGAGAGGGATATCTAAGTTGGCTGCCTATTCTATT
TCTGTCGGGGATGCTAAACGAACCCAGATAATGAGGGAGGATCTTTGTAGTCATGCATGGGAGTTTCGCTTTAAGGCTCCAGCTCCATTGTATTGGCTTAATTTGGATCCCTCATGGAGAGGCACAGGGCCTCCCATGCGGCGATATTTCCATCCGGATGGATCACAAACTGCAGACCCCACAGATAGAGTTTGGGGAGG
ACATGAATGCACCTACTCTATTGTCACAAGTTACATTGGCAAAGAAAAGATTAGGGAGCACTATGTGAGAATCCAACGATGGCCCAGAATGTCTGTTTCAAGGAAGCAGGACTGGGGTTGGGAGCTGGATAACCATGTGTATTGCTATTCCAGTATACCCGATGCTGAAAAGGAAGGTGGAACTGGCCCTCTCTTTGAAA
TCTGGAACATATAGATGAAGTTCAAACTCTTTAAGGATTGCTTATAATAGTGGGTTCATAGTATTTTAACTGAGTTTTCAGTTAGTCCATCATGGAAATGGATTTCATTATCACCAGAAACTGTAAGACTGGAGCATAAATTGTGGCTTTCATTATCATCAAAAACTGCAAGAGCAGCAAGACTCGATCATAAATCTTCT
GATATATTTTAGTACTTTTTAGGCAGTTTGTGATGGAAATGGCTTATATTGTTTTCCAAAATTAGCAGGC
>TRINITY_DN126966_c8_g1_i6 from sample A1 / Example unspliced isoform:GACTGCCCACTGTTTTGGGGAGTTTATCCATTGGGCCGACTTGTCTAACCTGACAGGGCCGACTTGTCTTGGGGAAATATAAAAATACATTTGATAATTATTTTCTTTACTTAATTTTATCCCCAAGGTTTACATTGATTCTTTGAAGGGGTTACATGATTAATTACATCAAGATCAACTCCCGTAGGAGGTACAAATAA
TTACAATAGAATATAATAAGAATAACTTCCGAAGTTGCACAAAATCCAACAGTTTCTGCTTATGAGCTAGACAAGTGAAAATAACTTGGGGGCTAGTCAAACTTGCATTGACTGAGAAGGATGTGTGATTACTCACAAGTCAAAATTTGACTTGTGAGTAATCATGGATTCATGAGTCCAACTCAGTCAACTTTAGTATG
ACTCGTCAACCTGCCTCTAAATGCCCAGAAGCTGCTCTGCCTACAAATGGCATGAAACTGTCATGCCATGTTTATATTTTTGTACTTGTCTTATGTTTTCCTAGCTGAGTCAAACTCTTGACCCTTGTGCTTTGCGTAGTTTTGCTCCAAGTTGAGTCTGGTAACATTGCTGGGAAGGGATACATTTGGGACTGGCCAAG
GGAATTTGCTCACCTGCACTGACTGAATGACGAAAGAGGCACTGCAATTATTGGAGGACAGAACTATTCTGATTGAAATTCAAGAGAACTTTAACAGAATCCAAACTTTACAGTCTTTTTGTTATCAGCCAATCTTGCCAAGATGTGGCTAAAAACTGGATCGAACAATGCCTACACAGGTTAACAGCACCCACTACCTA
TACTGATTTTAAAGATGAAAACTAAAGGGAGATGAGGTTCTCTGAAGGCCTCCATTCCCCAGGCCAATCTTGAGCTGAGATTTGGAAGTTATATTTGAAATTTGTTGTTTTGGAACTGCAGATGTCTAACAGCCTCATATTTATACAAGTGGTTATACTTTTTCTAGTCTCTGGACCTCCTGGATATGGCTTTTTGGACC
AGATTGTGCAATGCCAAGCTACAAGAACAGTGTGGATTGAAACTGGAATTTGTCAATCTCAACTAGTTCCTTCTGTGCCTTTGATCTACAAGTACTGGGCCCTTCTCTGCAGTTTGTTAGTTGATTTCCTTTGACTTGTAATATATCATCTAATTTCTGTATAATCATGCATGTTGCAGTTGTTCGCATATTTTTTGATT
GAGTTCTTTTCGCAGGTTTGATACAGGCAGCAGCATGAAAgttgagtatgttgtttattttcttctgggttctataataattacaatgatctatattcctcttttgatacttattaattatatgcaatgagaggtctttctatacattggttagatgtaataaattattccgtgcactcgggtaatattatcaaattctt
acttgtatggtatgcagTGTGAAGAGTTGTGGGCTGGCAAGGCACATCTCCCTCGAACAGCATTGCAGAGAGGGATATCTAAGTTGGCTGCCTATTCTATTTCTGTCGGGGATGCTAAACGAACCCAGATAATGAGGGAGGATCTTTGTAGTCATGCATGGGAGTTTCGCTTTAAGGCTCCAGCTCCATTGTATTGGCTT
AATTTGGATCCCTCATGGAGAGGCACAGGGCCTCCCATGCGGCGATATTTCCATCCGGATGGATCACAAACTGCAGACCCCACAGATAGAGTTTGGGGAGGACATGAATGCACCTACTCTATTGTCACAAGTTACATTGGCAAAGAAAAGATTAGGGAGCACTATGTGAGAATCCAACGATGGCCCAGAATGTCTGTTTC
AAGGAAGCAGGACTGGGGTTGGGAGCTGGATAACCATGTGTATTGCTATTCCAGTATACCCGATGCTGAAAAGGAAGGTGGAACTGGCCCTCTCTTTGAAATCTGGAACATATAGATGAAGTTCAAACTCTTTAAGGATTGCTTATAATAGTGGGTTCATAGTATTTTAACTGAGTTTTCAGTTAGTCCATCATGGAAAT
GGATTTCATTATCACCAGAAACTGTAAGACTGGAGCATAAATTGTGGCTTTCATTATCATCAAAAACTGCAAGAGCAGCAAGACTCGATCATAAATCTTCTGATATATTTTAGTACTTTTTAGGCAGTTTGTGATGGAAATGGCTTATATTGTTTTCCAAAATTAGCAGGC
Intron 2 GTTTGATACA ... TGGTATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 24.55 | 63 | 23 | 18 |
| A2 | 21.55 | 71 | 15 | 24 |
| A3 | 27.55 | 71 | 28 | 26 |
| A4 | 25.86 | 43 | 11 | 19 |
| A5 | 22.58 | 48 | 19 | 9 |
| A6 | 21.97 | 270 | 85 | 67 |
| A7 | 23.09 | 333 | 110 | 90 |
| A8 | 18.15 | 248 | 67 | 43 |
| A9 | 19.11 | 347 | 80 | 84 |
| A10 | 21.09 | 303 | 75 | 87 |
>TRINITY_DN100566_c0_g1_i2 from sample A4 / Example spliced isoformGGGGAACAATCATTTAAAAGTCTCCACGGTGGCAAGTACATCTTCCATTTCTGTTGATTCTCAGGTGCCCTGCAGATGAGGGGTTTTCATTCTTGCAGGGTTTGGCTTAAAATTCAATGACATTTCTATTCGCAATGGCGGGGTCCGATCCTCGTAAAATTCGATAGAAAAAGCCGAGGGTTTGGCCGTATCAAGCACGT
CAGAGATAATTGCAGTTGCAGAAAAAGTAGTAAGTTCGAATCTCGATGACTGCATTTGCCGTACAGTCCCAGGAAAAAAAATCCCCACCCAACCAAGCTTAAATTAAGGCTTGCGGGCCACCTGTTCCAGGGCTTGCGCTCTTTATTTCTGGCAGGGCCCGGGAGCCATTCAAGGGATTCATGCGAAATAATTTCGCAGA
GAGGTGGATTGCAATGAACACAGCAGAAAATGGCGAAGTGGCAGCCAGGACGAGTCCCCGAAGCGTTCTACCATCGTGGGAGCCGAGCGAATTGGCGAGGGAAAGGTCTCGAAGTGATCTTAAATTCACGGCCATCGAGGACAGACGGGACCTTAAAAGGCATTCGGTTTCAGGGGAAAAATGCGCGGAGAATGAAAAAA
CCAGGGTTTCGTCTTTGAATTCGCGTGAATTTAACGAGTGCCGGAGAAAGAACAGCCATGGTGAGAATGCTCAGAGTTCTCGTGAATTCGCAGCTGGGGACTGCTGGAAACGTCAAAGGCATGGGCTTTTGGGGGAAAAATGCATGGAGGATGAAAAGGCCAGGGTTTCTTCTTTGACTTTGTGTCAATTTGATGAACGT
GGAGCTCACAGGAGGAAGAAGAAGAAGAAAAAAGTGGAGGAGGACGAAATGGTTAGCGATCCGTTGGCGGTTTTTGGATCGGACCTAATGCTGACGATCTTGTATCGTCTGGATGCACGCAGCTTGGCACAGTCTATTTTGGTTTCTCGCGAATGGCAGGCATTGGCAGCCAGCGACTCTCTCTGGTCTAAAAAGTGTGA
AGAGTTGTGGGCTGGCAAGGCACATCTCCCTCGAACAGCATTGCAGAGAGGGATATCTAAGTTGGCTGCCTATTCTATTTCTGTCGGGGATGCTAAACGAACCCAGATAATGAGGGAGGATCTTTGTAGTCATGCATGGGAGTTTCGCTTTAAGGCTCCAGCTCCATTGTATTGGCTTAATTTGGATCCCTCATGGAGAG
GCACAGGGCCTCCCATGCGGCGATATTTCCATCCGGATGGATCACAAACTGCAGACCCCACAGATAGAGTTTGGGGAGGACATGAATGCACCTACTCTATTGTCACAAGTTACATTGGCAAAGAAAAGATTAGGGAGCACTATGTGAGAATCCAACGATGGCCCAGAATGTCTGTTTCAAGGAAGCAGGACTGGGGTTGG
GAGCTGGATAACCATGTGTATTGCTATTCCAGTATACCCGATGCTGAAAAGGAAGGTGGAACTGGCCCTCTCTTTGAAATCTGGAACATATAGATGAAGTTCAAACTCTTTAAGGATTGCTTATAATAGTGGGTTCATAGTATTTTAACTGAGTTTTCAGTTAGTCCATCATGGAAATGGATTTCATTATCACCAGAAAC
TGTAAGACTGGAGCATAAATTGTGGCTTTCATTATCATCAAAAACTGCAAGAGCAGCAAGACTCGATCATAAATCTTCTGATATATTTTAGTACTTTTTAGGCAGTTTGTGATGGAAATGGCTTATATTGTTTTCCAAAATTAGCA
>TRINITY_DN100566_c0_g1_i3 from sample A4 / Example unspliced isoform:GGGGAACAATCATTTAAAAGTCTCCACGGTGGCAAGTACATCTTCCATTTCTGTTGATTCTCAGGTGCCCTGCAGATGAGGGGTTTTCATTCTTGCAGGGTTTGGCTTAAAATTCAATGACATTTCTATTCGCAATGGCGGGGTCCGATCCTCGTAAAATTCGATAGAAAAAGCCGAGGGTTTGGCCGTATCAAGCACGT
CAGAGATAATTGCAGTTGCAGAAAAAGTAGTAAGTTCGAATCTCGATGACTGCATTTGCCGTACAGTCCCAGGAAAAAAAATCCCCACCCAACCAAGCTTAAATTAAGGCTTGCGGGCCACCTGTTCCAGGGCTTGCGCTCTTTATTTCTGGCAGGGCCCGGGAGCCATTCAAGGGATTCATGCGAAATAATTTCGCAGA
GAGGTGGATTGCAATGAACACAGCAGAAAATGGCGAAGTGGCAGCCAGGACGAGTCCCCGAAGCGTTCTACCATCGTGGGAGCCGAGCGAATTGGCGAGGGAAAGGTCTCGAAGTGATCTTAAATTCACGGCCATCGAGGACAGACGGGACCTTAAAAGGCATTCGGTTTCAGGGGAAAAATGCGCGGAGAATGAAAAAA
CCAGGGTTTCGTCTTTGAATTCGCGTGAATTTAACGAGTGCCGGAGAAAGAACAGCCATGGTGAGAATGCTCAGAGTTCTCGTGAATTCGCAGCTGGGGACTGCTGGAAACGTCAAAGGCATGGGCTTTTGGGGGAAAAATGCATGGAGGATGAAAAGGCCAGGGTTTCTTCTTTGACTTTGTGTCAATTTGATGAACGT
GGAGCTCACAGGAGGAAGAAGAAGAAGAAAAAAGTGGAGGAGGACGAAATGGTTAGCGATCCGTTGGCGGTTTTTGGATCGGACCTAATGCTGACGATCTTGTATCGTCTGGATGCACGCAGCTTGGCACAGTCTATTTTGGTTTCTCGCGAATGGCAGGCATTGGCAGCCAGCGACTCTCTCTGGTCTAAAAAGgtttg
atacaggcagcagcatgaaagttgagtatgttgtttattttcttctgggttctataataattacaatgatctatattcctcttttgatacttattaattatatgcaatgagaggtctttctatacattggttagatgtaataaattattccgtgcactcgggtaatattatcaaattcttacttgtatggtatgcagTGT
GAAGAGTTGTGGGCTGGCAAGGCACATCTCCCTCGAACAGCATTGCAGAGAGGGATATCTAAGTTGGCTGCCTATTCTATTTCTGTCGGGGATGCTAAACGAACCCAGATAATGAGGGAGGATCTTTGTAGTCATGCATGGGAGTTTCGCTTTAAGGCTCCAGCTCCATTGTATTGGCTTAATTTGGATCCCTCATGGAG
AGGCACAGGGCCTCCCATGCGGCGATATTTCCATCCGGATGGATCACAAACTGCAGACCCCACAGATAGAGTTTGGGGAGGACATGAATGCACCTACTCTATTGTCACAAGTTACATTGGCAAAGAAAAGATTAGGGAGCACTATGTGAGAATCCAACGATGGCCCAGAATGTCTGTTTCAAGGAAGCAGGACTGGGGTT
GGGAGCTGGATAACCATGTGTATTGCTATTCCAGTATACCCGATGCTGAAAAGGAAGGTGGAACTGGCCCTCTCTTTGAAATCTGGAACATATAGATGAAGTTCAAACTCTTTAAGGATTGCTTATAATAGTGGGTTCATAGTATTTTAACTGAGTTTTCAGTTAGTCCATCATGGAAATGGATTTCATTATCACCAGAA
ACTGTAAGACTGGAGCATAAATTGTGGCTTTCATTATCATCAAAAACTGCAAGAGCAGCAAGACTCGATCATAAATCTTCTGATATATTTTAGTACTTTTTAGGCAGTTTGTGATGGAAATGGCTTATATTGTTTTCCAAAATTAGCA
Intron 3 GTACTGGGCC ... CTTTTCGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 67.58 | 5.3 | 13 | 9 |
| A2 | 77.78 | 1 | 3 | 4 |
| A3 | 64.71 | 3 | 8 | 3 |
| A4 | 100 | 0 | 8 | 8 |
| A5 | 48.15 | 7 | 9 | 4 |
| A6 | 33.33 | 7 | 5 | 2 |
| A7 | 42.21 | 12.3 | 10 | 8 |
| A8 | 44.44 | 10 | 9 | 7 |
| A9 | 36.19 | 3.7 | 3 | 1 |
| A10 | 40.1 | 4 | 5 | 0 |
>TRINITY_DN43436_c0_g1_i3 from sample A6 / Example spliced isoformCCTTGTGCTTTGCGTAGTTTTGCTCCAAGTTGAGTCTGGTAACATTGCTGGGAAGGGATACATTTGGGACTGGCCAAGGGAATTTGCTCACCTGCACTGACTGAATGACGAAAGAGGCACTGCAATTATTGGAGGACAGAACTATTCTGATTGAAATTCAAGAGAACTTTAACAGAATCCAAACTTTACAGTCTTTTTGT
TATCAGCCAATCTTGCCAAGATGTGGCTAAAAACTGGATCGAACAATGCCTACACAGGTTAACAGCACCCACTACCTATACTGATTTTAAAGATGAAAACTATAGGGAGATGAGGTTCTCTGAAGGCCTCCATTCCCCAGGCCAATCTTGAGCTGAGATTTGGAAGTTATATTTGAAATTTGTTGTTTTGGAACTGCAGA
TGTCTAACAGCCTCATATTTATACAAGTGGTTATACTTTTTCTAGTCTCTGGACCTCCTGGATATGGCTTTTTGGACCAGATTGTGCAATGCCAAGCTACAAGAACAGTGTGGATTGAAACTGGAATTTGTCAATCTCAACTTGTTCCTTCTGTGCCTTTGATCTACAAGTTTGATACAGGCAGCAGCATGAAAGTGTGA
AGAGTTGTGGGCTGGCAAGGCACATCTCCCTCGAACAGCATTGCAGAGAGGGATATCTAAGTTGGCTGCCTATTCTATTTCTGTC
>TRINITY_DN43436_c0_g1_i5 from sample A6 / Example unspliced isoform:CCTTGTGCTTTGCGTAGTTTTGCTCCAAGTTGAGTCTGGTAACATTGCTGGGAAGGGATACATTTGGGACTGGCCAAGGGAATTTGCTCACCTGCACTGACTGAATGACGAAAGAGGCACTGCAATTATTGGAGGACAGAACTATTCTGATTGAAATTCAAGAGAACTTTAACAGAATCCAAACTTTACAGTCTTTTTGT
TATCAGCCAATCTTGCCAAGATGTGGCTAAAAACTGGATCGAACAATGCCTACACAGGTTAACAGCACCCACTACCTATACTGATTTTAAAGATGAAAACTATAGGGAGATGAGGTTCTCTGAAGGCCTCCATTCCCCAGGCCAATCTTGAGCTGAGATTTGGAAGTTATATTTGAAATTTGTTGTTTTGGAACTGCAGA
TGTCTAACAGCCTCATATTTATACAAGTGGTTATACTTTTTCTAGTCTCTGGACCTCCTGGATATGGCTTTTTGGACCAGATTGTGCAATGCCAAGCTACAAGAACAGTGTGGATTGAAACTGGAATTTGTCAATCTCAACTTGTTCCTTCTGTGCCTTTGATCTACAAgtactgggcccttctctgcagtttgttactt
gatttcctttgacttgtaatatatcatctaatttctgtataatcatgcatgttgcagttgttcgcatattttttgattgagttcttttcgcagGTTTGATACAGGCAGCAGCATGAAAGTTGAGTATGTTGTTTATTTTCTTCTGGGTTCTATAATAATTACAATGATCTATATTCCTCTTTTGATACTTATTAATTATA
TGCAATGAGAGGTCTTTCTATACATTGGTTAGATGTAATAAATTATTCCGTGCACTCGGGTAATATTATCAAATTCTTACTTGTATGGTATGCAGTGTGAAGAGTTGTGGGCTGGCAAGGCACATCTCCCTCGAACAGCATTGCAGAGAGGGATATCTAAGTTGGCTGCCTATTCTATTTCTGTCGGGGATGCTAAACGA
GTTCATTTGGAGATCCCTGATTTCAATCATGTTCCTAAGCCTATCAGAAGTCACATACAATATATTAAGACCCAGATAATGAGGGAGGATCTTTGTAGTCATGCATGGGAGTTTCGCTTTAAGGCTCCAGCTCCATTGTATTGGCTTAATTTGGATCCCTCATGGAGAGGCACAGGGCCTCCCATGCGGCGATATTTCCA
TCCGGATGGATCACAAACTGCAGACCCCACAGATAGAGTTTGGGGAGGACATGAATGCACCTACTCTATTGTCACAAGTTACATTGGCAAAGAAAAGATTAGGGAGCACTATGTGAGAATCCAACGATGGCCCAGAATGTCTGTTTCAAGGAAGCAGGACTGGGGTTGGGAGCTGGATAACCATGTGTATTGCTATTCCA
GTATACCCGATGCTGAAAAGGAAGGTGGAACTGGCCCTCTCTTTGAAATCTGGAACATATAGATGAAGTTCAAACTCTTTAAGGATTGCTTATAATAGTGGGTTCATAGTATTTTAACTGAGTTTTCAGTTAGTCCATCATGGAAATGGATTTCATTATCACCAGAAACTGTAAGACTGGAGCATAAATTGTGGCTTTCA
TTATCATCAAAAACTGCAAGAGCAGCAAGACTCGATCATAAATCTTCTGATATATTTTAGTACTTTTTAGGCAGTTTGTGATGGAAATGGCTTATATTGTTTTCCAAAATTAGCAGGACTCGATCATAAACTTAAATATATAGAATGATGTTTGCTTAGTACTTCTTTCTTTACCTGCATTTGTTGGTATACCTGCTAGA
GATGTTAATGGTCATGGATTGGTGTAAGATAAAATATCTCAATATACCTGCATATATGTATTGCTTACGAA
Intron 4 GTTCATTTGG ... ATATATTAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 4.42 | 118 | 5.7 | 16.7 |
| A2 | 8 | 83 | 7.3 | 13.3 |
| A3 | 10.75 | 92 | 11.7 | 12 |
| A4 | 10.62 | 69 | 8.3 | 8.7 |
| A5 | 17.69 | 39 | 8.7 | 8.3 |
| A6 | 10.03 | 317 | 37.3 | 44.3 |
| A7 | 8.9 | 405 | 41.3 | 59.7 |
| A8 | 11.08 | 356 | 46 | 58 |
| A9 | 10.9 | 410 | 52.7 | 69 |
| A10 | 11.96 | 320 | 48 | 38.3 |
>TRINITY_DN43436_c0_g1_i7 from sample A6 / Example spliced isoformGAAAATTAAGAATAACTAGCTATTTCTAAAAGAAAATAAATTTAAATTTAAAAAGCAAGGGAGGGGGAACAATCATTTAAAAGTCTCCACGGTGGCAAGTACATCTTCCATTTCTGTTGATTCTCAGGTGCCCTGCAGATGAGGGGTTTTCATTCTTGCAGGGTTTGGCTTAAAATTCAATGACATTTCTATTCGCAATG
GCGGGGTCCGATCCTCGTAAAATTCGATAGAAAAAGCCGAGGGTTTGGCCGTATCAAGCACGTCAGAGATAATTGCAGTTGCAGAAAAAGTAGTAAGTTCGAATCTCGATGACTGCATTTGCCGTACAGTCCCAGGAAAAAAAATCCCCACCCAACCAAGCTTAAATTAAGGCTTGCGGGCCACCTGTTCCAGGGCTTGC
GCTCTTTATTTCTGGCAGGGCCCGGGAGCCATTCAAGGGATTCATGCGAAATAATTTCGCAGAGAGGTGGATTGCAATGAACACAGCAGAAAATGGCGAAGTGGCAGCCAGGACGAGTCCCCGAAGCGTTCTACCATCGTGGGAGCCGAGCGAATTGGCGAGGGAAAGGTCTCGAAGTGATCTTAAATTCACGGCCATCG
AGGACAGACGGGACCTTAAAAGGCATTCGGTTTCAGGGGAAAAATGCGCGGAGAATGAAAAAACCAGGGTTTCGTCTTTGAATTCGCGTGAATTTAACGAGTGCCGGAGAAAGAACAGCCATGGTGAGAATGCTCAGAGTTCTCGTGAATTCGCAGCTGGGGACTGCTGGAAACGTCAAAGGCATGGGCTTTTGGGGGAA
AAATGCATGGAGGATGAAAAGGCCAGGGTTTCTTCTTTGACTTTGTGTCAATTTGATGAACGTGGAGCTCACAGGAGGAAGAAGAAGAAGAAAAAAGTGGAGGAGGACGAAATGGTTAGCGATCCGTTGGCGGTTTTTGGATCGGACCTAATGCTGACGATCTTGTATCGTCTGGATGCACGCAGCTTGGCACAGTCTAT
TTTGGTTTCTCGCGAATGGCAGGCATTGGCAGCCAGCGACTCTCTCTGGTCTAAAAAGTGTGAAGAGTTGTGGGCTGGCAAGGCACATCTCCCTCGAACAGCATTGCAGAGAGGGATATCTAAGTTGGCTGCCTATTCTATTTCTGTCGGGGATGCTAAACGAACCCAGATAATGAGGGAGGATCTTTGTAGTCATGCAT
GGGAGTTTCGCTTTAAGGCTCCAGCTCCATTGTATTGGCTTAATTTGGATCCCTCATGGAGAGGCACAGGGCCTCCCATGCGGCGATATTTCCATCCGGATGGATCACAAACTGCAGACCCCACAGATAGAGTTTGGGGAGGACATGAATGCACCTACTCTATTGTCACAAGTTACATTGGCAAAGAAAAGATTAGGGAG
CACTATGTGAGAATCCAACGATGGCCCAGAATGTCTGTTTCAAGGAAGCAGGACTGGGGTTGGGAGCTGGATAACCATGTGTATTGCTATTCCAGTATACCCGATGCTGAAAAGGAAGGTGGAACTGGCCCTCTCTTTGAAATCTGGAACATATAGATGAAGTTCAAACTCTTTAAGGATTGCTTATAATAGTGGGTTCA
TAGTATTTTAACTGAGTTTTCAGTTAGTCCATCATGGAAATGGATTTCATTATCACCAGAAACTGTAAGACTGGAGCATAAATTGTGGCTTTCATTATCATCAAAAACTGCAAGAGCAGCAAGACTCGATCATAAATCTTCTGATATATTTTAGTACTTTTTAGGCAGTTTGTGATGGAAATGGCTTATATTGTTTTCCA
AAATTAGCAGGACTCGATCATAAACTTAAATATATAGAATGATGTTTGCTTAGTACTTCTTTCTTTACCTGCATTTGTTGGTATACCTGCTAGAGATGTTAATGGTCATGGATTGGTGTAAGATAAAATATCTCAATATACCTGCATATATGTATTGCTTACGAA
>TRINITY_DN43436_c0_g1_i5 from sample A6 / Example unspliced isoform:CCTTGTGCTTTGCGTAGTTTTGCTCCAAGTTGAGTCTGGTAACATTGCTGGGAAGGGATACATTTGGGACTGGCCAAGGGAATTTGCTCACCTGCACTGACTGAATGACGAAAGAGGCACTGCAATTATTGGAGGACAGAACTATTCTGATTGAAATTCAAGAGAACTTTAACAGAATCCAAACTTTACAGTCTTTTTGT
TATCAGCCAATCTTGCCAAGATGTGGCTAAAAACTGGATCGAACAATGCCTACACAGGTTAACAGCACCCACTACCTATACTGATTTTAAAGATGAAAACTATAGGGAGATGAGGTTCTCTGAAGGCCTCCATTCCCCAGGCCAATCTTGAGCTGAGATTTGGAAGTTATATTTGAAATTTGTTGTTTTGGAACTGCAGA
TGTCTAACAGCCTCATATTTATACAAGTGGTTATACTTTTTCTAGTCTCTGGACCTCCTGGATATGGCTTTTTGGACCAGATTGTGCAATGCCAAGCTACAAGAACAGTGTGGATTGAAACTGGAATTTGTCAATCTCAACTTGTTCCTTCTGTGCCTTTGATCTACAAGTACTGGGCCCTTCTCTGCAGTTTGTTACTT
GATTTCCTTTGACTTGTAATATATCATCTAATTTCTGTATAATCATGCATGTTGCAGTTGTTCGCATATTTTTTGATTGAGTTCTTTTCGCAGGTTTGATACAGGCAGCAGCATGAAAGTTGAGTATGTTGTTTATTTTCTTCTGGGTTCTATAATAATTACAATGATCTATATTCCTCTTTTGATACTTATTAATTATA
TGCAATGAGAGGTCTTTCTATACATTGGTTAGATGTAATAAATTATTCCGTGCACTCGGGTAATATTATCAAATTCTTACTTGTATGGTATGCAGTGTGAAGAGTTGTGGGCTGGCAAGGCACATCTCCCTCGAACAGCATTGCAGAGAGGGATATCTAAGTTGGCTGCCTATTCTATTTCTGTCGGGGATGCTAAACGA
gttcatttggagatccctgatttcaatcatgttcctaagcctatcagaagtcacatacaatatattaagACCCAGATAATGAGGGAGGATCTTTGTAGTCATGCATGGGAGTTTCGCTTTAAGGCTCCAGCTCCATTGTATTGGCTTAATTTGGATCCCTCATGGAGAGGCACAGGGCCTCCCATGCGGCGATATTTCCA
TCCGGATGGATCACAAACTGCAGACCCCACAGATAGAGTTTGGGGAGGACATGAATGCACCTACTCTATTGTCACAAGTTACATTGGCAAAGAAAAGATTAGGGAGCACTATGTGAGAATCCAACGATGGCCCAGAATGTCTGTTTCAAGGAAGCAGGACTGGGGTTGGGAGCTGGATAACCATGTGTATTGCTATTCCA
GTATACCCGATGCTGAAAAGGAAGGTGGAACTGGCCCTCTCTTTGAAATCTGGAACATATAGATGAAGTTCAAACTCTTTAAGGATTGCTTATAATAGTGGGTTCATAGTATTTTAACTGAGTTTTCAGTTAGTCCATCATGGAAATGGATTTCATTATCACCAGAAACTGTAAGACTGGAGCATAAATTGTGGCTTTCA
TTATCATCAAAAACTGCAAGAGCAGCAAGACTCGATCATAAATCTTCTGATATATTTTAGTACTTTTTAGGCAGTTTGTGATGGAAATGGCTTATATTGTTTTCCAAAATTAGCAGGACTCGATCATAAACTTAAATATATAGAATGATGTTTGCTTAGTACTTCTTTCTTTACCTGCATTTGTTGGTATACCTGCTAGA
GATGTTAATGGTCATGGATTGGTGTAAGATAAAATATCTCAATATACCTGCATATATGTATTGCTTACGAA