NA ----> NA

Intron 1 GTACAAAAAA ... TCTGTAGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	20.71	11.5	0	3
A2	32.58	14.5	0	7
A3	23.61	19.5	0	6
A4	6.46	14.5	0	1
A5	0	16.5	0	0
A6	8.41	109	2	10
A7	14.51	112	2	19
A8	8.33	66	5	6
A9	18.59	127	0	29
A10	9.01	101	1	10

>TRINITY_DN39100_c0_g2_i1 from sample A8 / Example spliced isoform

GAAATTCTTTGTATCTACATCACCCAAGGTTTTCCCTATTTTTGTGAAATCGTTAGACCTTTACTTCTATTCCCATTTTTCCCTGCAACAAGAATATCGTTCAGACCAAGACTTTTTCAGACTCTATTATTTTGATATGGCACCTATAGAAATTCTTGAGGCTAATTATAAATGCATGAGGCATTTTTAGAAGGGTTGCC
TCGGGGTGGTGAGAAATGGTTTTAGAGTATGAATATTATGGAAGATATCCGGAAGGAATTCCTTAAAGACCCTACACATGCGGCTAATTGGAACAAAGGATTGCTAGTGTGTATGATCATACATGTTTCAGATTGGGTTTGACTTGTACAAGATTCCTAATCAATATATAAGGCTCATTCACCTATTAGATCGTGCCAAA
GATTTTCCAGTTCAGCATGAAGGAATAATCAAATTTGTTGCCAGCATAGAAGCAGGTGGAAAAATCACATAAGTTGGATCATCACTAAGTCAACATAACATAAGTATGAGAACGCATAAGAGAAATTTGTGCATTTTGTATCGGATTCTCCATTACATGGATGACAAATGTCCATTTTTCCTTATCCACGAACTATTGGA
TTTGATGATGAATCAATTCATAAGTTATTTTTGTGTATAAGACAGTTATACAATCCTTGAGAATGGGGATATGGGATTTGATTTTATCTTGTATAAATAGGAATTATCAGAACTTTCATAGGGGTCAATGGGTCGATGATTGACAGAAGAAAAGAAGATTAACGCCCCATGAGTGATTTGGGAACTCTTTTAAAACTCTG
TGTAAACTTATTTTCTGGAGTAAACGAAGCAGATCGCGAGTTTCTCTTCATGATGTCTTCGATTTTACTGAGTATTTTCTAAATGTGTTTTCAGCCTATTACCCAGATTTCTTTTAAATCTATA

>TRINITY_DN39100_c0_g2_i3 from sample A8 / Example unspliced isoform:

AATGGTTTTAGAGTATGAATATTATGGAAGATATCCGGAAGGAATTCCTTAAAGACCCTACACATGCGGCTAATTGGAACAAAGgtacaaaaaaaataaggagaatttgaaagcccagaagaaattgttgattcagaaagctcggaaattgtatattcaaagcaagcaaagtagagccaagatcataaagctaaaattaa
agttgagtgaagcaaggaggaaagtacaagccccatattaacgattgaacatattgatagatgttgcacaaaggatttaagtgcataagtctgaaaattttgaaattttgatgaagatgtgggagaattttgagtcctaaaatcatactcttctattccaaactctctccaaaattgatgactataaaccagcttgtgct
ctggcctattatttgttatgattactttgatcatgtacataatttttgtgtattgaagaaaattcaaggtaaatcattcattctcagtacatttatgtcttcttttgtaattttagttcaactatctatttcttttatgagcagcttcgcttttgtagctactcaaatatattcttatattcattactttgtttctgtag
cagGATTGCTAGTGTGTATGATCATACATGTTTCAGATTGGGTTTGACTTGTACAAGATTCCTAATCAATATATAAGGCTCATTCACCTATTAGATCGTGCCAAAGATTTTCCAGTTCAGCATGAAGGAATAATCAAATTTGTTGCCAGCATAGAAGCAGGTGGAAAAATCACATAAGTTGGATCATCACTAAGTCAACA
TAACATAAGTATGAGAACGCATAAGAGAAATTTGTGCATTTTGTATCGGATTCTCCATTACATGGATGACAAATGTCCATTTTTCCTTATCCACGAACTATTGGATTTGATGATGAATCAATTCATAAGTTATTTTTGTGTATAAGACAGTTATACAATCCTTGAGAATGGGGATATGGGATTTGATTTTATCTTGTATA
AATAGGAATTATCAGAACTTTCATAGGGGTCAATGGGTCGATGATTGACAGAAGAAAAGAAGATTAACGCCCCATGAGTGATTTGGGAACTCTTTTAAAACTCTGTGTAAACTTATTTTCTGGAGTAAACGAAGCAGATCGCGAGTTTCTCTTCATGATGTCTTCGATTTTACTGAGTATTTTCTAAATGTGTTTTCAGC
CTATTACCCAGATTTCTTTTAAATCTATA

Intron 2 GTTGGTCGGT ... CATGATACAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	30.95	6	0	2.7
A2	84.21	3	2	16
A3	100	0	0	11
A4	54.81	8	4	9.7
A5	41.67	7	5	5
A6	54.04	41	21.1	48.4
A7	73.84	16	6	45.3
A8	72.59	12	6	31.9
A9	70.83	23	4	56
A10	67.83	25	8	52.7

>TRINITY_DN38915_c0_g3_i2 from sample A6 / Example spliced isoform

AAATTCTTTGTATCTACATCACCCAAGGTTTTCCCTATTTTTGTGAAATCGTTAGACCTTTACTTCTATTCCCATTTTTCCCTGCAACAAGAATATCGTTCAGACCAAGACTTTTTCAGACTCTATTATTTTGATATGGCACCTATAGAAATTCTTGAGGCTAATTATAAATGCATGAGGCATTTTTAGAAGGGTTGCCT
CGGGGTGGTGAGAAATGGTTTTAGAGTATGAATATTATGGAAGATATCCGGAAGGAATTCCTTAAAGACCCTACACATGCGGCTAATTGGAACAAAGGATTGCTAGTGTGTATGATCATACATGTTTCAGATTGGGTTTGACTTGTACAAGATTCCTAATCAATATATAAGGCTCATTCACCTATTAGATCGTGCCAAAG
ATTTTCCAGTTCAGCATGAAGGAATAATCAAATTTGTTGCCAGCATAGAAGCAGGTGGAAAAATCACATAAGTTGGATCATCACTAAGTCAACATAACATAAGTATGAGAACGCATAAGAGAAATTTGTGCATTTTGTATCGGATTCTCCATTACATGGATGACAAATGTCCATTTTTCCTTATCCACGAACTATTGGAT
TTGATGATGAATCAATTCATACGTTATTTTTGTGTATAAGACAGTTATACAATCCTTGAGAATGGGGATATGGGATTTGATTTTATCTTGTATAAATAGGAATTATCAGAACTTTCATAGGGGTCAATGGGTCGATGATTGACAGAAGAAAAGAAGATTAACGCCCCATGAGTGATTTGGGAACTCTTTTAAAACTCTGT
GTAAACTTATTTTCTGGAGTAAACGAAGCAGATCGCGATTTTCTCTTCATGATGTCTTCGATTTTACTGAGTATTTTCTAAATGTGTTTTCAGCCTATAACCCAG

>TRINITY_DN38915_c0_g3_i1 from sample A6 / Example unspliced isoform:

AAATTCTTTGTATCTACATCACCCAAGGTTTTCCCTATTTTTGTGAAATCGTTAGACCTTTACTTCTATTCCCATTTTTCCCTGCAACAAGAATATCGTTCAGACCAAGACTTTTTCAGACTCTATTATTTTGATATGGCACCTATAGAAATTCTTGAGGCTAATTATAAATGCATGAGGCATTTTTAGAAGgttggtcg
gtttccctttctacaaaaatttcatgtgtttaacagtcaagtaacaaaggcttttgctcagtcgtttgatagggctagggctcaaattggtgacctcgaactacatctgtttgaagattttatttcacatgatacagGGTTGCCTCGGGGTGGTGAGAAATGGTTTTAGAGTATGAATATTATGGAAGATATCCGGAAGG
AATTCCTTAAAGACCCTACACATGCGGCTAATTGGAACAAAGGATTGCTAGTGTGTATGATCATACATGTTTCAGATTGGGTTTGACTTGTACAAGATTCCTAATCAATATATAAGGCTCATTCACCTATTAGATCGTGCCAAAGATTTTCCAGTTCAGCATGAAGGAATAATCAAATTTGTTGCCAGCATAGAAGCAGG
TGGAAAAATCACATAAGTTGGATCATCACTAAGTCAACATAACATAAGTATGAGAACGCATAAGAGAAATTTGTGCATTTTGTATCGGATTCTCCATTACATGGATGACAAATGTCCATTTTTCCTTATCCACGAACTATTGGATTTGATGATGAATCAATTCATACGTTATTTTTGTGTATAAGACAGTTATACAATCC
TTGAGAATGGGGATATGGGATTTGATTTTATCTTGTATAAATAGGAATTATCAGAACTTTCATAGGGGTCAATGGGTCGATGATTGACAGAAGAAAAGAAGATTAACGCCCCATGAGTGATTTGGGAACTCTTTTAAAACTCTGTGTAAACTTATTTTCTGGAGTAAACGAAGCAGATCGCGATTTTCTCTTCATGATGT
CTTCGATTTTACTGAGTATTTTCTAAATGTGTTTTCAGCCTATAACCCAG