NA ----> NA
Intron 1 GTATGTAGTT ... TGCATATTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 46.27 | 18 | 18 | 13 |
| A2 | 51.02 | 12 | 19 | 6 |
| A3 | 77.14 | 4 | 13 | 14 |
| A4 | 54.39 | 13 | 22 | 9 |
| A5 | 46.67 | 12 | 10 | 11 |
| A6 | 45.45 | 3 | 5 | 0 |
| A7 | 42.86 | 8 | 5 | 7 |
| A8 | 84.62 | 1 | 6 | 5 |
| A9 | 38.46 | 8 | 9 | 1 |
| A10 | 60 | 2 | 4 | 2 |
>TRINITY_DN101214_c0_g1_i13 from sample A4 / Example spliced isoformGACCGATTTAAAGCTGATGAATATGATTTGTAAATTGTTCATAATAAACTTGTTGAGCGAGATTAAGAGCAGCCTTCTGGCACACATTTAAGCGGTTTCTTCACTTTTCGCCAGGTTTCGATCTTCTGATCTGTTTTGCTTGCCCTTGTTTTTTTCTCATTTCAATTCAAACCCATCCGTTTACTCTAACGGTATCGTAT
ACTCAGCTCACCTGCGCCCTAGCATTTCTATCGAATCTTGCATGGCTGCCCGCAGTTGGAAGGTTTTGTTACAGTTGCCGTAATGCTGTGCTGGGAAGGCTTTGTTTATTTCTAATTTCGGTGCAGGAACTGTGGCTGGACTGAACAGCTTTCTACCCAGGATATGGCTGGTGATAACATACATCAGCTTCGCTGGACTT
TGTACTCTTTTCTAATGTGCAGAAATGGGCCAGAGAAGAAAGAACCAGAAAACTACAGGCATTGCAATGGGAGTAACTCTCACATCTGCATTGAATTCCAATACTAATAGTAACAACGATGATTGGATTGAGGAGGATTCGTGCCAGTCTAACAACTCTGGGGGCAAGTTCACTGGTAAAGACAATGTCACCCCTTTGGT
CGATGTCCGAAACAATAGTATTCCAACAAGGCAAAGAAGCAGGGGCAAGGGATTGCGTGATGGGCTCCGGGTTGATTGTGCAAGTGAAAATGTAGCCGCTGGCGAGAAACCGCCGAAAAGGAGAAGCAATAGAATTAAAGCTAAAAATCTTCAAGGCTTTCTGGACAAAGAAAATAAAGATAACATTAATACCTCTGAGC
CTGTGGTTTTAGAAGATGTCAATTGTGCATTAAATCTATCGGAGCTGCCTAATCAGAAACGAACATCCAAAAGGCGATTCGTTGCAGACGATGGTACTCAACTGAGAATAAGTAAGCGCATCTGTGTCCAAAATAGTAATGTTGCCAGGTCTCCGACGGAAAAGAGCAGCGTTAACAAAGAGGATACGGCTGATGCTGTC
TTGGGAAGACATACAATGGAAGAATCCCGGGTTATGCCCTCTATTGACCCTTTACAAAAACCTCCATCATCTGAAACGGGAACTGATGCTGCTGAAACGGGCAGCAATTCTATTCGGAACAGCCTGGATAAAATGAGAACTAAGCAGGATTGTGTCCCAAATAGTAGTGTTGCCAGATCTCCGACAGCAAAGAGCAGTGT
TAACGAAGAGGACATGATTGATGCTGTCTTGGGAAGACAGACTATGGAAGAATCCCTGGTTGCGTGCACTAATGATCCTCAGCAAAGCCCTCCATTTCCTGAAACAGGAACTGAAGCTGTTGAAACCGGTGGCAATTCTGTTCTGAAAAGACCGGTTGAAATGACTGCACACATGCATGTGGTCTCTGATGATGACGGAC
TTCCAGATGGGTTGTGCATGGAAGACAAATCCTTGCAAAATTGTCAGGCTAATGTTAATGATGGCCATTCAACTGGAATAACTATGGCAAAGGTGCAGAAGTGGTACTCAAAACTATACACAAAATATAAAGAGTTAAAGGCAAGGAAACTCGATGATGTGGAAGCTTATATCG
>TRINITY_DN101214_c0_g1_i14 from sample A4 / Example unspliced isoform:GACCGATTTAAAGCTGATGAATATGATTTGTAAATTGTTCATAATAAACTTGTTGAGCGAGATTAAGAGTTATGCACATAAGTTGGATAAAATTGAAATTGAATTCAAATACTTGTTTCTTCTTTCTGTCCAACGTCTCTAAACTCCGATGGTCTGTGTGTCACCCAATACAGGCAGCCTTCTGGCACACATTTAAGCGG
TTTCTTCACTTTTCGCCAGGTTTCGATCTTCTGATCTGTTTTGCTTGCCCTTGTTTTTTTCTCATTTCAATTCAAACCCATCCGTTTACTCTAACGGTATCGTATACTCAGCTCACCTGCGCCCTAGCATTTCTATCGAATCTTGCATGGCTGCCCGCAGTTGGAAGgtatgtagttttaccgctttacatttccccatc
tttcgaatattataatccagacaaacaaaacaatggaggttttgcatgaccaaaaacccacggatgttaattattttagatcgattgttctatagcttaaaaccttttgaagactaaatttagggttatgtagataatctgatatactgtgaaaccctattgtgcatattagGTTTTGTTACAGTTGCCGTAATGCTGTG
CTGGGAAGGCTTTGTTTATTTCTAATTTCGGTGCAGGAACTGTGGCTGGACTGAACAGCTTTCTACCCAGGATATGGCTGGTGATAACATACATCAGCTTCGCTGGACTTTGTACTCTTTTCTAATGTGCAGAAATGGGCCAGAGAAGAAAGAACCAGAAAACTACAGGCATTGCAATGGGAGTAACTCTCACATCTGCA
TTGAATTCCAATACTAATAGTAACAACGATGATTGGATTGAGGAGGATTCGTGCCAGTCTAACAACTCTGGGGGCAAGTTCACTGGTAAAGACAATGTCACCCCTTTGGTCGATGTCCGAAACAATAGTATTCCAACAAGGCAAAGAAGCAGGGGCAAGGGATTGCGTGATGGGCTCCGGGTTGATTGTGCAAGTGAAAA
TGTAGCCGCTGGCGAGAAACCGCCGAAAAGGAGAAGCAATAGAATTAAAGCTAAAAATCTTCAAGGCTTTCTGGACAAAGAAAATAAAGATAACATTAATACCTCTGAGCCTGTGGTTTTAGAAGATGTCAATTGTGCATTAAATCTATCGGAGCTGCCTAATCAGAAACGAACATCCAAAAGGCGATTCGTTGCAGACG
ATGGTACTCAACTGAGAATAAGTAAGCGCATCTGTGTCCAAAATAGTAATGTTGCCAGGTCTCCGACGGAAAAGAGCAGCGTTAACAAAGAGGATACGGCTGATGCTGTCTTGGGAAGACATACAATGGAAGAATCCCGGGTTATGCCCTCTATTGACCCTTTACAAAAACCTCCATCATCTGAAACGGGAACTGATGCT
GCTGAAACGGGCAGCAATTCTATTCGGAACAGCCTGGATAAAATGAGAACTAAGCAGGATTGTGTCCCAAATAGTAGTGTTGCCAGATCTCCGACAGCAAAGAGCAGTGTTAACGAAGAGGACATGATTGATGCTGTCTTGGGAAGACAGACTATGGAAGAATCCCTGGTTGCGTGCACTAATGATCCTCAGCAAAGCCC
TCCATTTCCTGAAACAGGAACTGAAGCTGTTGAAACCGGTGGCAATTCTGTTCTGAAAAGACCGGTTGAAATGACTGCACACATGCATGTGGTCTCTGATGATGACGGACTTCCAGATGGGTTGTGCATGGAAGACAAATCCTTGCAAAATTGTCAGGCTAATGTTAATGATGGCCATTCAACTGGAATAACTATGGCAA
AGGTGCAGAAGTGGTACTCAAAACTATACACAAAATATAAAGAGTTAAAGGCAAGGAAACTCGATGATGTGGAAGCTTATATCG
Intron 2 GTTTCGATCT ... GTATACTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 57.3 | 41.2 | 58.1 | 52 |
| A2 | 66.79 | 24.7 | 52.8 | 45.4 |
| A3 | 42.58 | 36.3 | 31.3 | 24.4 |
| A4 | 54.71 | 34 | 39.3 | 44.9 |
| A5 | 41.46 | 23.6 | 14.7 | 19.3 |
| A6 | 65.98 | 5.1 | 9.3 | 10.8 |
| A7 | 53.71 | 22.4 | 29.1 | 23 |
| A8 | 49.76 | 11.4 | 10.6 | 12.3 |
| A9 | 46.8 | 40.2 | 37.3 | 31.9 |
| A10 | 33.74 | 33.3 | 20.4 | 13.7 |
>TRINITY_DN101214_c0_g1_i2 from sample A4 / Example spliced isoformGACCGATTTAAAGCTGATGAATATGATTTGTAAATTGTTCATAATAAACTTGTTGAGCGAGATTAAGAGCAGCCTTCTGGCACACATTTAAGCGGTTTCTTCACTTTTCGCCAGCTCACCTGCGCCCTAGCATTTCTATCGAATCTTGCATGGCTGCCCGCAGTTGGAAGGAACTGTGGCTGGACTGAACAGCTTTCTAC
CCAGGATATGGCTGGTGATAACATACATCAGCTTCGCTGGACTTTGTACTCTTTTCTAATGTGCAGAAATGGGCCAGAGAAGAAAGAACCAGAAAACTACAGGCATTGCAATGGGAGTAACTCTCACATCTGCATTGAATTCCAATACTAATAGTAACAACGATGATTGGATTGAGGAGGATTCGTGCCAGTCTAACAAC
TCTGGGGGCAAGTTCACTGGTAAAGACAATGTCACCCCTTTGGTCGATGTCCGAAACAATAGTATTCCAACAAGGCAAAGAAGCAGGGGCAAGGGATTGCGTGATGGGCTCCGGGTTGATTGTGCAAGTGAAAATGTAGCCGCTGGCGAGAAACCGCCGAAAAGGAGAAGCAATAGAATTAAAGCTAAAAATCTTCAAGG
CTTTCTGGACAAAGAAAATAAAGATAACATTAATACCTCTGAGCCTGTGGTTTTAGAAGATGTCAATTGTGCATTAAATCTATCGGAGCTGCCTAATCAGAAACGAACATCCAAAAGGCGATTCGTTGCAGACGATGGTACTCAACTGAGAATAAGTAAGCGCATCTGTGTCCAAAATAGTAATGTTGCCAGGTCTCCGA
CGGAAAAGAGCAGCGTTAACAAAGAGGATACGGCTGATGCTGTCTTGGGAAGACATACAATGGAAGAATCCCGGGTTATGCCCTCTATTGACCCTTTACAAAAACCTCCATCATCTGAAACGGGAACTGATGCTGCTGAAACGGGCAGCAATTCTATTCGGAACAGCCTGGATAAAATGAGAACTAAGCAGGATTGTGTC
CCAAATAGTAGTGTTGCCAGATCTCCGACAGCAAAGAGCAGTGTTAACGAAGAGGACATGATTGATGCTGTCTTGGGAAGACAGACTATGGAAGAATCCCTGGTTGCGTGCACTAATGATCCTCAGCAAAGCCCTCCATTTCCTGAAACAGGAACTGAAGCTGTTGAAACCGGTGGCAATTCTGTTCTGAAAAGACCGGT
TGAAATGACTGCACACATGCATGTGGTCTCTGATGATGACGGACTTCCAGATGGGTTGTGCATGGAAGACAAATCCTTGCAAAATTGTCAGGCTAATGTTAATGATGGCCATTCAACTGGAATAACTATGGCAAAGGTGCAGAAGTGGTACTCAAAACTATACACAAAATATAAAGAGTTAAAGGCAAGGAAACTCGATG
ATGTGGAAGCTTATATCG
>TRINITY_DN101214_c0_g1_i13 from sample A4 / Example unspliced isoform:GACCGATTTAAAGCTGATGAATATGATTTGTAAATTGTTCATAATAAACTTGTTGAGCGAGATTAAGAGCAGCCTTCTGGCACACATTTAAGCGGTTTCTTCACTTTTCGCCAGgtttcgatcttctgatctgttttgcttgcccttgtttttttctcatttcaattcaaacccatccgtttactctaacggtatcgtat
actcagCTCACCTGCGCCCTAGCATTTCTATCGAATCTTGCATGGCTGCCCGCAGTTGGAAGGTTTTGTTACAGTTGCCGTAATGCTGTGCTGGGAAGGCTTTGTTTATTTCTAATTTCGGTGCAGGAACTGTGGCTGGACTGAACAGCTTTCTACCCAGGATATGGCTGGTGATAACATACATCAGCTTCGCTGGACTT
TGTACTCTTTTCTAATGTGCAGAAATGGGCCAGAGAAGAAAGAACCAGAAAACTACAGGCATTGCAATGGGAGTAACTCTCACATCTGCATTGAATTCCAATACTAATAGTAACAACGATGATTGGATTGAGGAGGATTCGTGCCAGTCTAACAACTCTGGGGGCAAGTTCACTGGTAAAGACAATGTCACCCCTTTGGT
CGATGTCCGAAACAATAGTATTCCAACAAGGCAAAGAAGCAGGGGCAAGGGATTGCGTGATGGGCTCCGGGTTGATTGTGCAAGTGAAAATGTAGCCGCTGGCGAGAAACCGCCGAAAAGGAGAAGCAATAGAATTAAAGCTAAAAATCTTCAAGGCTTTCTGGACAAAGAAAATAAAGATAACATTAATACCTCTGAGC
CTGTGGTTTTAGAAGATGTCAATTGTGCATTAAATCTATCGGAGCTGCCTAATCAGAAACGAACATCCAAAAGGCGATTCGTTGCAGACGATGGTACTCAACTGAGAATAAGTAAGCGCATCTGTGTCCAAAATAGTAATGTTGCCAGGTCTCCGACGGAAAAGAGCAGCGTTAACAAAGAGGATACGGCTGATGCTGTC
TTGGGAAGACATACAATGGAAGAATCCCGGGTTATGCCCTCTATTGACCCTTTACAAAAACCTCCATCATCTGAAACGGGAACTGATGCTGCTGAAACGGGCAGCAATTCTATTCGGAACAGCCTGGATAAAATGAGAACTAAGCAGGATTGTGTCCCAAATAGTAGTGTTGCCAGATCTCCGACAGCAAAGAGCAGTGT
TAACGAAGAGGACATGATTGATGCTGTCTTGGGAAGACAGACTATGGAAGAATCCCTGGTTGCGTGCACTAATGATCCTCAGCAAAGCCCTCCATTTCCTGAAACAGGAACTGAAGCTGTTGAAACCGGTGGCAATTCTGTTCTGAAAAGACCGGTTGAAATGACTGCACACATGCATGTGGTCTCTGATGATGACGGAC
TTCCAGATGGGTTGTGCATGGAAGACAAATCCTTGCAAAATTGTCAGGCTAATGTTAATGATGGCCATTCAACTGGAATAACTATGGCAAAGGTGCAGAAGTGGTACTCAAAACTATACACAAAATATAAAGAGTTAAAGGCAAGGAAACTCGATGATGTGGAAGCTTATATCG
Intron 3 GTATGTAGTT ... TTCGGTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 28.67 | 47.6 | 18 | 20 |
| A2 | 40.12 | 27 | 19 | 17 |
| A3 | 30.17 | 60.4 | 13 | 39 |
| A4 | 30.6 | 59.4 | 22 | 30 |
| A5 | 30.91 | 35.8 | 10 | 22 |
| A6 | 32.5 | 10.8 | 5 | 5 |
| A7 | 27.24 | 26.8 | 5 | 15 |
| A8 | 31.12 | 12.4 | 6 | 5 |
| A9 | 25.67 | 52.6 | 9 | 27 |
| A10 | 24.22 | 45.8 | 4 | 25 |
>TRINITY_DN101214_c0_g1_i2 from sample A4 / Example spliced isoformGACCGATTTAAAGCTGATGAATATGATTTGTAAATTGTTCATAATAAACTTGTTGAGCGAGATTAAGAGCAGCCTTCTGGCACACATTTAAGCGGTTTCTTCACTTTTCGCCAGCTCACCTGCGCCCTAGCATTTCTATCGAATCTTGCATGGCTGCCCGCAGTTGGAAGGAACTGTGGCTGGACTGAACAGCTTTCTAC
CCAGGATATGGCTGGTGATAACATACATCAGCTTCGCTGGACTTTGTACTCTTTTCTAATGTGCAGAAATGGGCCAGAGAAGAAAGAACCAGAAAACTACAGGCATTGCAATGGGAGTAACTCTCACATCTGCATTGAATTCCAATACTAATAGTAACAACGATGATTGGATTGAGGAGGATTCGTGCCAGTCTAACAAC
TCTGGGGGCAAGTTCACTGGTAAAGACAATGTCACCCCTTTGGTCGATGTCCGAAACAATAGTATTCCAACAAGGCAAAGAAGCAGGGGCAAGGGATTGCGTGATGGGCTCCGGGTTGATTGTGCAAGTGAAAATGTAGCCGCTGGCGAGAAACCGCCGAAAAGGAGAAGCAATAGAATTAAAGCTAAAAATCTTCAAGG
CTTTCTGGACAAAGAAAATAAAGATAACATTAATACCTCTGAGCCTGTGGTTTTAGAAGATGTCAATTGTGCATTAAATCTATCGGAGCTGCCTAATCAGAAACGAACATCCAAAAGGCGATTCGTTGCAGACGATGGTACTCAACTGAGAATAAGTAAGCGCATCTGTGTCCAAAATAGTAATGTTGCCAGGTCTCCGA
CGGAAAAGAGCAGCGTTAACAAAGAGGATACGGCTGATGCTGTCTTGGGAAGACATACAATGGAAGAATCCCGGGTTATGCCCTCTATTGACCCTTTACAAAAACCTCCATCATCTGAAACGGGAACTGATGCTGCTGAAACGGGCAGCAATTCTATTCGGAACAGCCTGGATAAAATGAGAACTAAGCAGGATTGTGTC
CCAAATAGTAGTGTTGCCAGATCTCCGACAGCAAAGAGCAGTGTTAACGAAGAGGACATGATTGATGCTGTCTTGGGAAGACAGACTATGGAAGAATCCCTGGTTGCGTGCACTAATGATCCTCAGCAAAGCCCTCCATTTCCTGAAACAGGAACTGAAGCTGTTGAAACCGGTGGCAATTCTGTTCTGAAAAGACCGGT
TGAAATGACTGCACACATGCATGTGGTCTCTGATGATGACGGACTTCCAGATGGGTTGTGCATGGAAGACAAATCCTTGCAAAATTGTCAGGCTAATGTTAATGATGGCCATTCAACTGGAATAACTATGGCAAAGGTGCAGAAGTGGTACTCAAAACTATACACAAAATATAAAGAGTTAAAGGCAAGGAAACTCGATG
ATGTGGAAGCTTATATCG
>TRINITY_DN101214_c0_g1_i14 from sample A4 / Example unspliced isoform:GACCGATTTAAAGCTGATGAATATGATTTGTAAATTGTTCATAATAAACTTGTTGAGCGAGATTAAGAGTTATGCACATAAGTTGGATAAAATTGAAATTGAATTCAAATACTTGTTTCTTCTTTCTGTCCAACGTCTCTAAACTCCGATGGTCTGTGTGTCACCCAATACAGGCAGCCTTCTGGCACACATTTAAGCGG
TTTCTTCACTTTTCGCCAGGTTTCGATCTTCTGATCTGTTTTGCTTGCCCTTGTTTTTTTCTCATTTCAATTCAAACCCATCCGTTTACTCTAACGGTATCGTATACTCAGCTCACCTGCGCCCTAGCATTTCTATCGAATCTTGCATGGCTGCCCGCAGTTGGAAGgtatgtagttttaccgctttacatttccccatc
tttcgaatattataatccagacaaacaaaacaatggaggttttgcatgaccaaaaacccacggatgttaattattttagatcgattgttctatagcttaaaaccttttgaagactaaatttagggttatgtagataatctgatatactgtgaaaccctattgtgcatattaggttttgttacagttgccgtaatgctgtg
ctgggaaggctttgtttatttctaatttcggtgcagGAACTGTGGCTGGACTGAACAGCTTTCTACCCAGGATATGGCTGGTGATAACATACATCAGCTTCGCTGGACTTTGTACTCTTTTCTAATGTGCAGAAATGGGCCAGAGAAGAAAGAACCAGAAAACTACAGGCATTGCAATGGGAGTAACTCTCACATCTGCA
TTGAATTCCAATACTAATAGTAACAACGATGATTGGATTGAGGAGGATTCGTGCCAGTCTAACAACTCTGGGGGCAAGTTCACTGGTAAAGACAATGTCACCCCTTTGGTCGATGTCCGAAACAATAGTATTCCAACAAGGCAAAGAAGCAGGGGCAAGGGATTGCGTGATGGGCTCCGGGTTGATTGTGCAAGTGAAAA
TGTAGCCGCTGGCGAGAAACCGCCGAAAAGGAGAAGCAATAGAATTAAAGCTAAAAATCTTCAAGGCTTTCTGGACAAAGAAAATAAAGATAACATTAATACCTCTGAGCCTGTGGTTTTAGAAGATGTCAATTGTGCATTAAATCTATCGGAGCTGCCTAATCAGAAACGAACATCCAAAAGGCGATTCGTTGCAGACG
ATGGTACTCAACTGAGAATAAGTAAGCGCATCTGTGTCCAAAATAGTAATGTTGCCAGGTCTCCGACGGAAAAGAGCAGCGTTAACAAAGAGGATACGGCTGATGCTGTCTTGGGAAGACATACAATGGAAGAATCCCGGGTTATGCCCTCTATTGACCCTTTACAAAAACCTCCATCATCTGAAACGGGAACTGATGCT
GCTGAAACGGGCAGCAATTCTATTCGGAACAGCCTGGATAAAATGAGAACTAAGCAGGATTGTGTCCCAAATAGTAGTGTTGCCAGATCTCCGACAGCAAAGAGCAGTGTTAACGAAGAGGACATGATTGATGCTGTCTTGGGAAGACAGACTATGGAAGAATCCCTGGTTGCGTGCACTAATGATCCTCAGCAAAGCCC
TCCATTTCCTGAAACAGGAACTGAAGCTGTTGAAACCGGTGGCAATTCTGTTCTGAAAAGACCGGTTGAAATGACTGCACACATGCATGTGGTCTCTGATGATGACGGACTTCCAGATGGGTTGTGCATGGAAGACAAATCCTTGCAAAATTGTCAGGCTAATGTTAATGATGGCCATTCAACTGGAATAACTATGGCAA
AGGTGCAGAAGTGGTACTCAAAACTATACACAAAATATAAAGAGTTAAAGGCAAGGAAACTCGATGATGTGGAAGCTTATATCG
Intron 4 GTATGTAGTT ... TAATTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 63.75 | 29 | 16 | 51 |
| A2 | 60.23 | 35 | 19 | 53 |
| A3 | 64.2 | 29 | 12 | 52 |
| A4 | 63.79 | 21 | 13 | 37 |
| A5 | 73.33 | 12 | 4 | 33 |
| A6 | 72.73 | 6 | 2 | 16 |
| A7 | 49.25 | 34 | 10 | 33 |
| A8 | 76.67 | 7 | 5 | 23 |
| A9 | 68.25 | 20 | 3 | 43 |
| A10 | 54.67 | 34 | 10 | 41 |
>TRINITY_DN101214_c0_g1_i8 from sample A4 / Example spliced isoformGACCGATTTAAAGCTGATGAATATGATTTGTAAATTGTTCATAATAAACTTGTTGAGCGAGATTAAGAGTTGTGCATATAAGTTGGATAAAATTGAAATTCAATTCAAATACTTGTTTCTTCTTTCTGTCCAACGTCTCTAAACTCCGATGGTCTGTGTGTCACCCAATACAGGCAGCCTTCTGGCACACATTTAAGCGG
TTTCTTCACTTTTCGCCAGGTTTCGATCTTCTGATCTGTTTTGCATGTGCCCTTGTTTATTTCTCATTTCAATTCAAACCCATCGGTTTACTGGAACGGTATCGTATACTCAGCTCCCCTGCGCCCTAGCAGTTTTATTGAATCTTGCATGGCTGCTTGCAGTTGGAAGAAATGGGCCAGAGAAGAAAGAACAAAAAAAC
TACAGGCAATGCAGTGGGAGTAGCTCTCGCATCTGCATTGAATTCCAATACTAATAGTAACAATGATGATTTGAGTGAGGAGGATTCGTGCCAGTCTCACAACTCTGGGGGCAAGTTCAATTCCCGGTCTCGCAAAACCACCACTGGTAAAGACAATGCCACCCCTTTGGTCGATGTCCGAAACAATAGTATTCCAACAA
GGCAAAGAAGCAGGGGCAAGGGATTGCGTGATGGACTCGGGGTTGATTCTGCAATTGAAAATGTAGCTGCTGGCGAGAAACCTCCGAAAAGGAGAAGTAATAGAATTACAGCTAAAAATCTTCAAGGCTTTCTGGACAAAGAAAATAAAGATAACATTAATACCTCTGAGCCTGTGGTTTTAGAAGATGTCAA
>TRINITY_DN101214_c0_g1_i5 from sample A4 / Example unspliced isoform:GACCGATTTAAAGCTGATGAATATGATTTGTAAATTGTTCATAATAAACTTGTTGAGCGAGATTAAGAGTTGTGCATATAAGTTGGATAAAATTGAAATTCAATTCAAATACTTGTTTCTTCTTTCTGTCCAACGTCTCTAAACTCCGATGGTCTGTGTGTCACCCAATACAGGCAGCCTTCTGGCACACATTTAAGCGG
TTTCTTCACTTTTCGCCAGGTTTCGATCTTCTGATCTGTTTTGCCTGTGCCCTTGTTTATTTCCCATTTCAATTCAAACCCATCGGTTTACTGGAACGGTATCGTATACTCAGCTCCCCTGCGCCCTAGCAGTTTTATTGAATCTTGCATGGCTGCTTGCAGTTGGAAGgtatgtagttttaacgctttaaatttccatg
tctttcgaatatcataatccaggcaaacaaaataatggatattttgcatgaccagaaacccacaggtgttatttcttctagatcgattattctatagcttaaaacccttttaagaccatttaaatttagggttatgtgatactctgatatactatgaaaccgtattgtgcatattaggttttgttatagctgccataggc
tgggaggctttgtttatttctaatttcggtgcaggaactgtggctgggctgaacagctttctacgcaggatatggcaggtgataacatacaacagcttctggactaatttgtactcttttctaatttgcagAAATGGGCCAGAGAAGAAAGAACAAAAAAACTACAGGCAATGCAGTGGGAGTAGCTCTCGCATCTGCAT
TGAATTCCAATACTAATAGTAACAATGATGATTTGAGTGAGGAGGATTCGTGCCAGTCTCACAACTCTGGGGGCAAGTTCAATTCCCGGTCTCGCAAAACCACCACTGGTAAAGACAATGCCACCCCTTTGGTCGATGTCCGAAACAATAGTATTCCAACAAGGCAAAGAAGCAGGGGCAAGGGATTGCGTGATGGACTC
GGGGTTGATTCTGCAATTGAAAATGTAGCTGCTGGCGAGAAACCTCCGAAAAGGAGAAGTAATAGAATTACAGCTAAAAATCTTCAAGGCTTTCTGGACAAAGAAAATAAAGATAACATTAATACCTCTGAGCCTGTGGTTTTAGAAGATGTCAA
Intron 5 GTTATGCACA ... CCCAATACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 73.57 | 17.4 | 39 | 57.8 |
| A2 | 79.78 | 12.8 | 37 | 63.8 |
| A3 | 80.78 | 13 | 54 | 55 |
| A4 | 72.61 | 12.6 | 22 | 45 |
| A5 | 79.22 | 5.2 | 12 | 26.8 |
| A6 | 86.07 | 1.2 | 9 | 5.6 |
| A7 | 78.34 | 10.8 | 40 | 37.2 |
| A8 | 73.16 | 5.8 | 13 | 18.6 |
| A9 | 74.59 | 14 | 36 | 44.2 |
| A10 | 67.93 | 16 | 28 | 35.8 |
>TRINITY_DN101214_c0_g1_i2 from sample A4 / Example spliced isoformGACCGATTTAAAGCTGATGAATATGATTTGTAAATTGTTCATAATAAACTTGTTGAGCGAGATTAAGAGCAGCCTTCTGGCACACATTTAAGCGGTTTCTTCACTTTTCGCCAGCTCACCTGCGCCCTAGCATTTCTATCGAATCTTGCATGGCTGCCCGCAGTTGGAAGGAACTGTGGCTGGACTGAACAGCTTTCTAC
CCAGGATATGGCTGGTGATAACATACATCAGCTTCGCTGGACTTTGTACTCTTTTCTAATGTGCAGAAATGGGCCAGAGAAGAAAGAACCAGAAAACTACAGGCATTGCAATGGGAGTAACTCTCACATCTGCATTGAATTCCAATACTAATAGTAACAACGATGATTGGATTGAGGAGGATTCGTGCCAGTCTAACAAC
TCTGGGGGCAAGTTCACTGGTAAAGACAATGTCACCCCTTTGGTCGATGTCCGAAACAATAGTATTCCAACAAGGCAAAGAAGCAGGGGCAAGGGATTGCGTGATGGGCTCCGGGTTGATTGTGCAAGTGAAAATGTAGCCGCTGGCGAGAAACCGCCGAAAAGGAGAAGCAATAGAATTAAAGCTAAAAATCTTCAAGG
CTTTCTGGACAAAGAAAATAAAGATAACATTAATACCTCTGAGCCTGTGGTTTTAGAAGATGTCAATTGTGCATTAAATCTATCGGAGCTGCCTAATCAGAAACGAACATCCAAAAGGCGATTCGTTGCAGACGATGGTACTCAACTGAGAATAAGTAAGCGCATCTGTGTCCAAAATAGTAATGTTGCCAGGTCTCCGA
CGGAAAAGAGCAGCGTTAACAAAGAGGATACGGCTGATGCTGTCTTGGGAAGACATACAATGGAAGAATCCCGGGTTATGCCCTCTATTGACCCTTTACAAAAACCTCCATCATCTGAAACGGGAACTGATGCTGCTGAAACGGGCAGCAATTCTATTCGGAACAGCCTGGATAAAATGAGAACTAAGCAGGATTGTGTC
CCAAATAGTAGTGTTGCCAGATCTCCGACAGCAAAGAGCAGTGTTAACGAAGAGGACATGATTGATGCTGTCTTGGGAAGACAGACTATGGAAGAATCCCTGGTTGCGTGCACTAATGATCCTCAGCAAAGCCCTCCATTTCCTGAAACAGGAACTGAAGCTGTTGAAACCGGTGGCAATTCTGTTCTGAAAAGACCGGT
TGAAATGACTGCACACATGCATGTGGTCTCTGATGATGACGGACTTCCAGATGGGTTGTGCATGGAAGACAAATCCTTGCAAAATTGTCAGGCTAATGTTAATGATGGCCATTCAACTGGAATAACTATGGCAAAGGTGCAGAAGTGGTACTCAAAACTATACACAAAATATAAAGAGTTAAAGGCAAGGAAACTCGATG
ATGTGGAAGCTTATATCG
>TRINITY_DN101214_c0_g1_i9 from sample A4 / Example unspliced isoform:GACCGATTTAAAGCTGATGAATATGATTTGTAAATTGTTCATAATAAACTTGTTGAGCGAGATTAAGAgttatgcacataagttggataaaattgaaattgaattcaaatacttgtttcttctttctgtccaacgtctctaaactccgatggtctgtgtgtcacccaatacagGCAGCCTTCTGGCACACATTTAAGCGG
TTTCTTCACTTTTCGCCAGGTTTCGATCTTCTGATCTGTTTTGCTTGCCCTTGTTTTTTTCTCATTTCAATTCAAACCCATCGGTTTACTCTAACGGTATCGTATACTCAGCTCACCTGCGCCCTAGCATTTCTATCGAATCTTGCATGGCTGCCCGCAGTTGGAAGGAACTGTGGCTGGACTGAACAGCTTTCTACCCA
GGATATGGCTGGTGATAACATACATCAGCTTCGCTGGACTTTGTACTCTTTTCTAATGTGCAGAAATGGGCCAGAGAAGAAAGAACCAGAAAACTACAGGCATTGCAATGGGAGTAACTCTCACATCTGCATTGAATTCCAATACTAATAGTAACAACGATGATTGGATTGAGGAGGATTCGTGCCAGTCTAACAACTCT
GGGGGCAAGTTCACTGGTAAAGACAATGTCACCCCTTTGGTCGATGTCCGAAACAATAGTATTCCAACAAGGCAAAGAAGCAGGGGCAAGGGATTGCGTGATGGGCTCCGGGTTGATTGTGCAAGTGAAAATGTAGCCGCTGGCGAGAAACCGCCGAAAAGGAGAAGCAATAGAATTAAAGCTAAAAATCTTCAAGGCTT
TCTGGACAAAGAAAATAAAGATAACATTAATACCTCTGAGCCTGTGGTTTTAGAAGATGTCAATTGTGCATTAAATCTATCGGAGCTGCCTAATCAGAAACGAACATCCAAAAGGCGATTCGTTGCAGACGATGGTACTCAACTGAGAATAAGTAAGCGCATCTGTGTCCAAAATAGTAATGTTGCCAGGTCTCCGACGG
AAAAGAGCAGCGTTAACAAAGAGGATACGGCTGATGCTGTCTTGGGAAGACATACAATGGAAGAATCCCGGGTTATGCCCTCTATTGACCCTTTACAAAAACCTCCATCATCTGAAACGGGAACTGATGCTGCTGAAACGGGCAGCAATTCTATTCGGAACAGCCTGGATAAAATGAGAACTAAGCAGGATTGTGTCCCA
AATAGTAGTGTTGCCAGATCTCCGACAGCAAAGAGCAGTGTTAACGAAGAGGACATGATTGATGCTGTCTTGGGAAGACAGACTATGGAAGAATCCCTGGTTGCGTGCACTAATGATCCTCAGCAAAGCCCTCCATTTCCTGAAACAGGAACTGAAGCTGTTGAAACCGGTGGCAATTCTGTTCTGAAAAGACCGGTTGA
AATGACTGCACACATGCATGTGGTCTCTGATGATGACGGACTTCCAGATGGGTTGTGCATGGAAGACAAATCCTTGCAAAATTGTCAGGCTAATGTTAATGATGGCCATTCAACTGGAATAACTATGGCAAAGGTTTTGTTATGCTTTTTAACCTAAATATGTTTTGGATTCACCATATTTCAAATTTATTTCCTATGCT
TTATGGCCTCTTCGAAGTTTCATTTGTTTGCTATGCTTTTAAGCCT
Intron 6 GTTTTGTTAC ... TTCGGTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 30.22 | 46.5 | 18 | 22 |
| A2 | 33.86 | 27.5 | 12 | 16 |
| A3 | 24.29 | 59.5 | 4 | 34 |
| A4 | 26.74 | 60.8 | 13 | 31 |
| A5 | 31.61 | 35.8 | 12 | 21 |
| A6 | 27.13 | 11.3 | 3 | 5 |
| A7 | 29.59 | 26.3 | 8 | 14 |
| A8 | 11.36 | 12 | 1 | 2 |
| A9 | 25.7 | 51 | 8 | 27 |
| A10 | 23.43 | 44.5 | 2 | 25 |
>TRINITY_DN101214_c0_g1_i2 from sample A4 / Example spliced isoformGACCGATTTAAAGCTGATGAATATGATTTGTAAATTGTTCATAATAAACTTGTTGAGCGAGATTAAGAGCAGCCTTCTGGCACACATTTAAGCGGTTTCTTCACTTTTCGCCAGCTCACCTGCGCCCTAGCATTTCTATCGAATCTTGCATGGCTGCCCGCAGTTGGAAGGAACTGTGGCTGGACTGAACAGCTTTCTAC
CCAGGATATGGCTGGTGATAACATACATCAGCTTCGCTGGACTTTGTACTCTTTTCTAATGTGCAGAAATGGGCCAGAGAAGAAAGAACCAGAAAACTACAGGCATTGCAATGGGAGTAACTCTCACATCTGCATTGAATTCCAATACTAATAGTAACAACGATGATTGGATTGAGGAGGATTCGTGCCAGTCTAACAAC
TCTGGGGGCAAGTTCACTGGTAAAGACAATGTCACCCCTTTGGTCGATGTCCGAAACAATAGTATTCCAACAAGGCAAAGAAGCAGGGGCAAGGGATTGCGTGATGGGCTCCGGGTTGATTGTGCAAGTGAAAATGTAGCCGCTGGCGAGAAACCGCCGAAAAGGAGAAGCAATAGAATTAAAGCTAAAAATCTTCAAGG
CTTTCTGGACAAAGAAAATAAAGATAACATTAATACCTCTGAGCCTGTGGTTTTAGAAGATGTCAATTGTGCATTAAATCTATCGGAGCTGCCTAATCAGAAACGAACATCCAAAAGGCGATTCGTTGCAGACGATGGTACTCAACTGAGAATAAGTAAGCGCATCTGTGTCCAAAATAGTAATGTTGCCAGGTCTCCGA
CGGAAAAGAGCAGCGTTAACAAAGAGGATACGGCTGATGCTGTCTTGGGAAGACATACAATGGAAGAATCCCGGGTTATGCCCTCTATTGACCCTTTACAAAAACCTCCATCATCTGAAACGGGAACTGATGCTGCTGAAACGGGCAGCAATTCTATTCGGAACAGCCTGGATAAAATGAGAACTAAGCAGGATTGTGTC
CCAAATAGTAGTGTTGCCAGATCTCCGACAGCAAAGAGCAGTGTTAACGAAGAGGACATGATTGATGCTGTCTTGGGAAGACAGACTATGGAAGAATCCCTGGTTGCGTGCACTAATGATCCTCAGCAAAGCCCTCCATTTCCTGAAACAGGAACTGAAGCTGTTGAAACCGGTGGCAATTCTGTTCTGAAAAGACCGGT
TGAAATGACTGCACACATGCATGTGGTCTCTGATGATGACGGACTTCCAGATGGGTTGTGCATGGAAGACAAATCCTTGCAAAATTGTCAGGCTAATGTTAATGATGGCCATTCAACTGGAATAACTATGGCAAAGGTGCAGAAGTGGTACTCAAAACTATACACAAAATATAAAGAGTTAAAGGCAAGGAAACTCGATG
ATGTGGAAGCTTATATCG
>TRINITY_DN101214_c0_g1_i13 from sample A4 / Example unspliced isoform:GACCGATTTAAAGCTGATGAATATGATTTGTAAATTGTTCATAATAAACTTGTTGAGCGAGATTAAGAGCAGCCTTCTGGCACACATTTAAGCGGTTTCTTCACTTTTCGCCAGGTTTCGATCTTCTGATCTGTTTTGCTTGCCCTTGTTTTTTTCTCATTTCAATTCAAACCCATCCGTTTACTCTAACGGTATCGTAT
ACTCAGCTCACCTGCGCCCTAGCATTTCTATCGAATCTTGCATGGCTGCCCGCAGTTGGAAGgttttgttacagttgccgtaatgctgtgctgggaaggctttgtttatttctaatttcggtgcagGAACTGTGGCTGGACTGAACAGCTTTCTACCCAGGATATGGCTGGTGATAACATACATCAGCTTCGCTGGACTT
TGTACTCTTTTCTAATGTGCAGAAATGGGCCAGAGAAGAAAGAACCAGAAAACTACAGGCATTGCAATGGGAGTAACTCTCACATCTGCATTGAATTCCAATACTAATAGTAACAACGATGATTGGATTGAGGAGGATTCGTGCCAGTCTAACAACTCTGGGGGCAAGTTCACTGGTAAAGACAATGTCACCCCTTTGGT
CGATGTCCGAAACAATAGTATTCCAACAAGGCAAAGAAGCAGGGGCAAGGGATTGCGTGATGGGCTCCGGGTTGATTGTGCAAGTGAAAATGTAGCCGCTGGCGAGAAACCGCCGAAAAGGAGAAGCAATAGAATTAAAGCTAAAAATCTTCAAGGCTTTCTGGACAAAGAAAATAAAGATAACATTAATACCTCTGAGC
CTGTGGTTTTAGAAGATGTCAATTGTGCATTAAATCTATCGGAGCTGCCTAATCAGAAACGAACATCCAAAAGGCGATTCGTTGCAGACGATGGTACTCAACTGAGAATAAGTAAGCGCATCTGTGTCCAAAATAGTAATGTTGCCAGGTCTCCGACGGAAAAGAGCAGCGTTAACAAAGAGGATACGGCTGATGCTGTC
TTGGGAAGACATACAATGGAAGAATCCCGGGTTATGCCCTCTATTGACCCTTTACAAAAACCTCCATCATCTGAAACGGGAACTGATGCTGCTGAAACGGGCAGCAATTCTATTCGGAACAGCCTGGATAAAATGAGAACTAAGCAGGATTGTGTCCCAAATAGTAGTGTTGCCAGATCTCCGACAGCAAAGAGCAGTGT
TAACGAAGAGGACATGATTGATGCTGTCTTGGGAAGACAGACTATGGAAGAATCCCTGGTTGCGTGCACTAATGATCCTCAGCAAAGCCCTCCATTTCCTGAAACAGGAACTGAAGCTGTTGAAACCGGTGGCAATTCTGTTCTGAAAAGACCGGTTGAAATGACTGCACACATGCATGTGGTCTCTGATGATGACGGAC
TTCCAGATGGGTTGTGCATGGAAGACAAATCCTTGCAAAATTGTCAGGCTAATGTTAATGATGGCCATTCAACTGGAATAACTATGGCAAAGGTGCAGAAGTGGTACTCAAAACTATACACAAAATATAAAGAGTTAAAGGCAAGGAAACTCGATGATGTGGAAGCTTATATCG