sp|Q9M0B9|IBL1_ARATH ----> Transcription factor IBH1-like 1

Intron 1 GTAACTGGGT ... CGTTGCTCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	85.96	4	30	19
A2	83.87	5	30	22
A3	78.26	10	46	26
A4	55.56	12	12	18
A5	93.55	1	12	17
A6	77.78	19	57	76
A7	62.64	34	58	56
A8	65.48	29	56	54
A9	70.21	28	72	60
A10	78.67	16	60	58

>TRINITY_DN48408_c3_g2_i8 from sample A10 / Example spliced isoform

TTTGTCATGAGGGTTTCCTCTGGAGTTCTCGGCTCAATGCTCTTTGTTTCTTCCGTCGCCTTGTTTTTCTGGTGGAGGAGAACATCACTCCCAATCAAATACTCAATCTTGAAGCAAGCACAACACAATCTTACTAGGTTAGAAATATAGCCTTGTTTTTCTCGGCTCAATGCTCTTTGTTTCTTAGCCTTGTCTTTCGG
GTGGAGGAGAACATCACTCCCAAGCAAATACTCAATCTTGAAGTAAGCACAGCACAGGAGGAAAAGATTCTCTCGAGGTTCATAAGAAGGAAAAGGAGGACTCTTCGGGTTGGCTCTTCACAGTGATGCAGCGTTTATATGTTATGACCTCCTCTTTCAAGCTAATCCTCCTCAAGCGAGCTTGGCAGACGGTTTTATGG
ATCTCAGCAAGCCGGATATGATCAATGCCTCTGCTGGAGTCGGTGACACAAAGGGTATCCTGTCTCATCCGGGCT

>TRINITY_DN48408_c3_g2_i14 from sample A10 / Example unspliced isoform:

TTTGTCATGAGGGTTTCCTCTGGAGTTCTCGGCTCAATGCTCTTTGTTTCTTCCGTCGCCTTGTTTTTCTGGTGGAGGAGAACATCACTCCCAATCAAATACTCAATCTTGAAGCAAGCACAACACAATCTTACTAGGTTAGAAATATAGCCTTGTTTTTCTCGGCTCAATGCTCTTTGTTTCTTAGCCTTGTCTTTCGG
GTGGAGGAGAACATCACTCCCAAGCAAATACTCAATCTTGAAGTAAGCACAGCACAGGAGGAAAAGATTCTCTCGAGGTTCATAAGAAGGAAAAGGAGGACTCTTCGGGTTGGCTCTTCACAGgtaactgggttcaacaggtaacagtgaatagggttcaacagtgaaatatcttgacagcaaaagattctcgcatggga
aaaaaagagattcaatgacatgatgagaatcgttgctcagTGATGCAGCGTTTATATGTTATGACCTCCTCTTTCAAGCTAATCCTCCTCAAGCGAGCTTGGCAGACGGTTTTATGGATCTCAGCAAGCCGGATATGATCAATGCCTCTGCTGGAGTCGGTGACACAAAGGGTATCCTGTCTCATCCGGGCT

Intron 2 GTAACTGGGT ... CGTTGCTCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	77.07	7	30	12.5
A2	79.48	6	30	17.5
A3	86.96	5	46	19.5
A4	48.28	12.5	12	11
A5	91.22	1	12	10.5
A6	68.8	24	57	52
A7	61.36	31	58	42.5
A8	66.39	22	56	33.5
A9	68.09	27.5	71	47.5
A10	79.22	12.5	60	40

>TRINITY_DN115579_c1_g1_i2 from sample A2 / Example spliced isoform

GTAATCCTGTAGATAGAATTTGGCCACGCGCGATGGGAGCCCTAGCTCTGTCACGAGGGTTTCCTCTGAAGTTCTCGGCTGAATGCTCTTTGTTTCTTCCTTTGCCTTGTTTTTCTGGTGGAGGAGAACATCACTCCCAATCAAATACTCAATCTTGAAGCAAGCACAACACAATCTTACTAGGTTAGAAATATAGCCTT
GTTTTTCTCGGCTCAATGCTCTTTGTTTCTTAGCCTTGTCTTTCGGGTGGAGGAGAACATCACTCCCAAGAAAATACTCAATCTTGAAGTAAGCACAGCACAGGAGGAAAAGATTCTCTCAAGGTTTATAAGAAGGAAAAGGAGGACTCTTCGGGTTGGCTCTTCACAGTGATGCAGCGTTTATATGTTATGACCTCCTC
TTTCAAGCTAATCCTCCTCAAGCGAGCTTGGCAGACGGTTTTATGGATCTCAGCAAGCCGGGTGAAGTATCAACTGCCAACATGTCTTCTTTTAATCCCAATATTTATTTTTTCTAACCCTTCCCTGCTATGAAATGTTATGACGTTGCATTGTTCTATATAGACAAAATGAATCCATACAGAAATTACTGTTTGATACT
AGAAATTCAAGATAGCTATAAGTTTTTGTTCCGTAAGACATACTTCACTATGGCAAAGAATGTCTTCAATTCCTATACATATCCCTCTATCCTCTGATTTTCTAGAGTACCGTCCGAAAAGGATGACTCTTCGGGTTGGCTCTTCACAG

>TRINITY_DN115579_c1_g1_i3 from sample A2 / Example unspliced isoform:

GTAATCCTGTAGATAGAATTTGGCCACGCGCGATGGGAGCCCTAGCTCTGTCACGAGGGTTTCCTCTGAAGTTCTCGGCTGAATGCTCTTTGTTTCTTCCTTTGCCTTGTTTTTCTGGTGGAGGAGAACATCACTCCCAATCAAATACTCAATCTTGAAGCAAGCACAACACAATCTTACTAGGTTAGAAATATAGCCTT
GTTTTTCTCGGCTCAATGCTCTTTGTTTCTTAGCCTTGTCTTTCGGGTGGAGGAGAACATCACTCCCAAGCAAATACTCAATCTTGAAGTAAGCATAGCACAGGAGGAAAAGATTCTCTCGAGGTTCATAAGAAGGAAAAGGAGGACTCTTCGGGTTGGCTCTTCACAGgtaactgggttcaacaggtaacagtgaatag
ggttcaacagtgaaatatcttgacagcaaaagattctcgcatgggaaaaaagagattcaatgacatgatgagaatcgttgctcagTGATGCAGCGTTTATATGTT