NA ----> NA

Intron 1 GCAGGGACTA ... TTTATTGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	33.33	10	3	5
A2	46.15	7	1	6
A3	42.86	12	9	9
A4	66.67	5	1	10
A5	58.33	5	0	7
A6	47.46	31	4	28
A7	38.25	42	4	26
A8	30.77	45	7	20
A9	29.63	19	3	8
A10	34.09	29	1	15

>TRINITY_DN105409_c0_g1_i4 from sample A1 / Example spliced isoform

CCAGGACGGATGGCAATTAACCTAAACATGAGTGATGGCAGTAACCTGAAGATGCCGCGCATAAGATCAGAGGTTCCGAAGGAGTTAAGGTGTTAAGGTCCATGCACACACGGCCATGGAAGCGATGGAGCGCCGTCGGATTACAGGCGAGGGACAATACCAAGAAATAGTTTTGACGGGTTGATCCGTGCCAGCCACGG
TTATATCTTCCAGTTATGCGCGCTCCTCGCGCATGTGTGTATCAGCGCTGACAGCTTGCAAACTTGCTTTGAACGTGAAATGCAATGCCTCTCAGAGCCACTCCTTTGTTCAATTCTCTCAGTTTTTTGTTTAAATTGCATTGATTTTAATGCCCG

>TRINITY_DN105409_c0_g1_i3 from sample A1 / Example unspliced isoform:

CCAGGACGGATGGCAATTAACCTAAACATGAGTGATGGCAGTAACCTGAAGATGCCGCGCATAAGATCAGAGgcagggactacatgtttaggttaattgcatagatcaaaggcagggatgaaaaagactgagaggagaccaggtattgactattttgctgttttttattgcagGTTCCGAAGGAGTTAAGGTGTTAAGGT
CCATGCACACACGGCCATGGAAGCGATGGAGCGCCGTCGGATTACAGGCGAGGGACAATACCAAGAAATAGTTTTGACGGGTTGATCCGTGCCAGCCACGGTTATATCTTCCAGTTATGCGCGCTCCTCGCGCATGTGTGTATCAGCGCTGACAGCTTGCAAACTTGCTTTGAACGTGAAATGCAATGCCTCTCAGAGCC
ACTCCTTTGTTCAATTCTCTCAGTTTTTTGTTTAAATTGCATTGATTTTAATGCCCG