sp|Q9LUN4|CHX19_ARATH ----> Cation/H(+) antiporter 19

Intron 1 GTGGTTTCTT ... ATGGTTTCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	24.26	103	44	22
A2	11.89	107.5	19	10
A3	13.29	166.5	33	18
A4	20.17	95	31	17
A5	18.52	55	15	10
A6	5.27	135	14	1
A7	8.75	255.5	43	6
A8	4.88	156	13	3
A9	7.6	219	23	13
A10	3.57	284	20	1

>TRINITY_DN111026_c0_g2_i8 from sample A4 / Example spliced isoform

TTCTCAACAAGATCAGATAGTAGTTGCTTTGGAGGCAGAAGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGATACCACTTGACAGATTGTGAGGTGGAGGCAGAGGCAGAGGCAGAGACAGAGGCAGGCATACCGCTTGACAGATCGAGCCGGGCACTCTGCATCACGCCGTGTTTGATTCAAACGTAGCCCCTC
TCTTCGAAGAGGACGTCAATAGGCTCTGGCTGTGGCTGTGGCTGTGTTATGGTGGTTTCTTGATGTGTTATGGTCCTGAATGACGAAGTTTTTGCGATGCTGTTGCTCATGGCTCTATTGACTACATTCATTACAACCCCATTGGTAACAACCATATACATGCCAGCAAGAAAAGTAGATCCGTACAGAGAGAAGCCGGA
AGACGAGCTCAGAATCCTGGCCTGTCTGCACAGTACGAGGAACATACCAGCGATGATGAACCCGGTAGAGGCCTCCAGGGGGATTCGAAAGCCTGCCCTACGCCTCTACATTATGCACCTGGTCGAGCTGTTAGAGAGGTCATCTGCGATCATGATGGTTCACAAGGCCAGGAAAAACGGCCTCCCCTTCTGGAACCGCA
GCCATTCTCAACAAGATCAGATAGTAGTTGCTTTGGAGGCGTATGGGATACTATTAGTAATGGCATGAAGGAGTTGTCCATTTGTTATACAGAAAGTGCATTGAATCCATCATATGCAGAACAGATAAATAAATGTTGTATCGATTGGCGATTAGAGATAGAAGCACTGAGAATAATTTCAGAAGTGATCAATGAATGCT
GTATTCAAATTTAGAGGAAAATTGAATGCAGCACTGACCTCTCAATATTCGTCAAGATTCAATTAGGGTTTAACTTGCGTTAGCTGGCTGCTTCTCCTTAACATTTATGGCAGACATTGGGAGAAAATCGCTAATCCCAACTTACGGGAGAACATAAATCTGTTCCATGTTCGCATTTAAATTTACTTCTGGATGCATAG
GAGGTTTGGTTGAAGGTGTAAGTGGCCTTTAATTGTACGCCTAGTGCGCAGATCCTATATGGGTTGGCACGCTCCTGTATTTAGGTCTGCAGACGAGAGATCATAAGCAGCAGGGAGTGGGAAGATGGAAGATTATCCTGAGTTATTTAGGTATGTGGCAATGGAGGAGAAGGTATCCAGGGTATGGGCCTTGATATTGG
GTAGTATGGAAGCATTTACATGGTTGGAAATGGGTATGAT

>TRINITY_DN111026_c0_g2_i1 from sample A4 / Example unspliced isoform:

GTATGAGTCTGGTTGTGGTCTGTATGAGTCTGGTTGTGGTCTGTATGAGTCTGGTTGTGGTCTGTATGAGTCTGGATTGTGTGTTGTTATGTCTATCTTGTTGTGTCATCTGTTTGAGAGGTGGAGGTGGAGGCAGAGGCAGAGGCAGAGACAGAGGCAGGCATACCGCTTGACAGATCGAGCCGGGCACTCTGCATCAC
GCCGTGTTTGATTCAAACGTAGCCCCTCTCTTCGAAGAGGACGTCAATAGGCTCTGGCTGTGGCTGTGGCTGTGTTATGGTGGTTTCTTGATGTGTTATGgtggtttcttgatctgataactattatttactgataactgttcctgttaatgttttttcattgaagtcttatttactgataactgttctgttaatggttt
cagGTCCTGAATGACGAAGTTTTTGCGATGCTGTTGCTCATGGCTCTATTGACTACATTCATTACAACCCCATTGGTAACA

Intron 2 GTCTGGTGTA ... TCTGTATGAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	60.11	86	96	163.3
A2	56.95	85	85.3	140
A3	63.58	106	135	235.3
A4	62.82	75	98.5	155
A5	65.32	44	68.8	97.3
A6	50.52	103	85.8	124.8
A7	51.27	166	124.3	225.3
A8	53.47	111	97.8	158.3
A9	47.84	137	95	156.8
A10	46.08	205	138.8	212

>TRINITY_DN135324_c2_g1_i22 from sample A1 / Example spliced isoform

TCTCAGGGTCTAGTCTGGTCTGTTCTGTATGAGTCTGGTATGGAGCTCCATGTATGAGTCTGGTTGTGGTCCATGTATGAGTCTGGTTGTGGTCTGTATGAGTCTGTCTGGTTGTGGTCTGTGATTGTGTGTTGTTATGTCTATGTTGTTGTGTCATCTGTTTGAGAGTGGAGGTGGAGGCAGAGGGAGAGGCAGGGGCA
GGCATACCGCTTGACAGATCGAGCCGGGCACTCTGCAAACGTAGACCCTCTCTTCGAAGAGGACGTCAATAGGCTGTGGCTGTGGCTGTGGTGGTTTCTTGATGTGTTATGGTCCTGAATGACGAAGTTTTTGCGATGCTGGTGCTCCTAGCTCTATTGACTACATTCATTACAACCCCATTGGTAACAGCCATATACAT
ACCAGCAAGAAAAGTAGCTCCGTACAGAGAGAAGCCGGAAGACAAGCTCAAAATCTTGTCCTGTCTGCACAGTTTGAGGAACATACCAGCGATGATAAACCCGGTAGAGGCCTCCAGGGGGATTCGAAAGCCTGCCCTACGCCTCTACATTATGCACCTGGTCGAGCTGTTAGAGAGGTCATCTGCGATCATGATGGTTC
ACAAGGCCAGGAAAAACGGCCTCCCCTTCTGGAACCGCAGCCATTCTCAACAAGATCAGATAGTAGTTGCTTTGGAGGCGTATGGGATACTATTAGTAATGGCATGAAGGAGTTGTCCATTTGTTATACAGAAAGTGCATTGAATCCATCATATGCAGAACAGATAAATAAATGTTGTATCGATTGGCGATTAGAGATAG
AAGCGAATAATTTCAGAAGTGATCAATGAATGCTGTATTCAAATTTAGAGGAAAATTGAATGCAGCACTGACCTCTCAATATTCGTCAAGATTCAATTAGGGTTTAACTTGCGTTAGCTGGCTGCTTCTCCTTAACATTTATGGCAGACATTGGGAGAAAATCGATAATCCCAACTTACGGGAGAACATAAATCTGTTCC
ATGTTCGCATTTAAATTTACTTCTGGATGCATAGGAGGTTTGGTTGAAGGTGTAAGTGGCCTTTAATTGTACGCCTAGTGCGCAGATCCTATATGGGTTGGCACGCTCCTGTATTTAGGTCTGCAGACGAGAGATCATGAGCAGCAGGGAGTGGGAAGATGGAAGATTATCCTGAGTTATTTAGGTATGTGGCAATGGAG
GAGAAGGTATCCAGGGTATGGACCTTGATATTGGGTAGTATGGAAGC

>TRINITY_DN135324_c2_g1_i20 from sample A1 / Example unspliced isoform:

TTTCCTAATAAAATTGTCAGTCTCCCCCAAATCAATTTCAATGTGCAGTTTACAGTTGCAATTCGTAATGATTATCAAACCGAGAGTGGCTCTGGGATCCATTGCAACGGTCCATTGATACTTTTCGTTGTCCAAACTCCCATTGGCATTGGCATTCCCCGGCGTCTCCTCCACCTCTCAGGCTGTCTGCGTTCTGGTCT
GTATGAGTCTGGTCTGGAGCTCCATGTATGAGTCTGGTTGTGGTCCATGTATGAGTCTGGTTGTGGTCTGTATGAGTCTGgtctggtgtatgggtctggttgtggtctgtatgagTCTGGTTGTGGTCTGTGATTGTGTGTTGTTATGTCTATCTTGTTGTGTCATCTGTTTGAGAGGTGGAGGTGGAGGCAGAGGCAGA
GGCAGAGACAGAGGCAGGCATACCGCTTGACAGATCGAGCCGGGCACTCTGCATCACGCCGTGTTTGATTCAAACGTAGACCCTCTCTTCGAAGAGGACGTCAATAGGCTGTGGCTGTGGCTGTGGTGGTTTCTTGATGTGTTATGGTCCTGAATGACGAAGTTTTTGCGATGCTGGTGCTCCTAGCTCTATTGACTACA
TTCATTACAACCCCATTGGTAACAGCCATATACATACCAGCAAGAAAAGTAGCTCCGTACAGAGAGAAGCCGGAAGACAAGCTCAAAATCTTGTCCTGTCTGCACAGTTTGAGGAACATACCAGCGATGATAAACCCGGTAGAGGCCTCCAGGGGGATTCGAAAGCCTGCCCTACGCCTCTACATTATGCACCTGGTCGA
GCTGTTAGAGAGGTCATCTGCGATCATGATGGTTCACAAGGCCAGGAAAAACGGCCTCCCCTTCTGGAACCGCAGCCATTCTCAACAAGATCAGATAGTAGTTGCTTTGGAGGCGTATGGGATACTATTAGTAATGGCATGAAGGAGTTGTCCATTTGTTATACAGAAAGTGCATTGAATCCATCATATGCAGAACAGAT
AAATAAATGTTGTATCGATTGGCGATTAGAGATAGAAGCACTGAGAATAATTTCAGAAGTGATCAATGAATGCTGTATTCAAATTTAGAGGAAAATTGAATGCAGCACTGACCTCTCAATATTCGTCAAGATTCAATTAGGGTTTAACTTGCGTTAGCTGGCTGCTTCTCCTTAACATTTATGGCAGACATTGGGAGAAA
ATCGATAATCCCAACTTACGGGAGAACATAAATCTGTTCCATGTTCGCATTTAAATTTACTTCTGGATGCATAGGAGGTTTGGTTGAAGGTGTAAGTGGCCTTTAATTGTACGCCTAGTGCGCAGATCCTATATGGGTTGGCACGCTCCTGTATTTAGGTCTGCAGACGAGAGATCATGAGCAGCAGGGAGTGGGAAGAT
GGAAGATTATCCTGAGTTATTTAGGTATGTGGCAATGGAGGAGAAGGTATCCAGGGTATGGACCTTGATATTGGGTAGTATGGAAGCATTTACATGGTTGGAAATGGGTATGATGGTGGGGTTCTTGATGGCTCTAAATATATGGTCACGGAGGAATTCAAACGGAGCTGTAAAATGGCCTGTGTCGGGCAATCTGTTAC
TCTGGTTCATGTTTACGCACAAGTAAAATCGATCCCAACACCAAGTATCAAGCATTTTTTTAACATTGATTCAATGTTATTTACAATGTGATGTACAATAAGTTAACCTATCATTAAAGAGACCTTTCATTTTCTTATATAATTTGTTTCCTATTGTGATTATTAGATGATGAATAAGTTGACTTGTATA