sp|O81416|GUN17_ARATH ----> Endoglucanase 17
Intron 1 GTCTGGTTTT ... CTTTTTCTAG
Found issues: Low number of reads
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 100 | 0 | 4 | 9 |
| A2 | 42.86 | 2 | 2 | 1 |
| A3 | -1 | 0 | 0 | 0 |
| A4 | -1 | 0 | 0 | 0 |
| A5 | 100 | 0 | 3 | 0 |
| A6 | -1 | 0 | 0 | 0 |
| A7 | 33.33 | 4 | 3 | 1 |
| A8 | 50 | 1 | 1 | 1 |
| A9 | 60 | 1 | 3 | 0 |
| A10 | -1 | 0 | 0 | 0 |
>TRINITY_DN46966_c0_g1_i7 from sample A7 / Example spliced isoformGGATGGCAGCATAGTAGATAAGGTGATGCCCTCCCTGCTTTTTCACTGAAACGGTCATATATCATGTTATTGTTGGCTATATATTCATATTTCTTGTTGGATGTATATCATTCAGATCTCTTTTCTTCACGTCTGTCTGTATTTGTCTCGAGGTATTTTGGGTATTTTTTGCCATGGATTTTCTTCTTTAACAGAGGCTT
TGCTGGTATGTTTGTCTGCTTCCGTTCGTTCATTTTTCTTTTCATTTGTTTGTTTTGGGTGTTGTATGTTATATGGTTTTGCAGGTTTTTTCATTTTCTTGTATGTTTTTGGGATCCACTTTCTCTGCATGCATGCATTCCTTTTCTTCCCTGCCTGGTTTGGTATTTTTTGGGTACCTGGTCCACCTCAGAGTTATATT
ACAAGTTCAAATGTTGACAATACAGAGCTGGACTTCTCTACGTCTTGGGAATCATGTTTGATTACTGATACAACATATTAACATTGGGATTGATTTTTTCATTAAGAGGCTTATTTGGTGGTAATTTTGATGGAGGTGTATCGTGTTTCACTAAAACACATTTCCTTAGTATCCTGGCAAGGATTTCTGGGAATCTCAAT
TGAGGGGACAATTGTGTGTATGGACACAACTCATATTTTCGCTACAAAAATGAAGTACACCCCATCAAAAGTGTAATCAGCCTTTTGCTTGCATTATATTTGTGTAAGGGAGACGGCTTCATGAATCTGTTGTGGGGTACATAGGTCACAGAATAATTGATAAAGAGTTGACAACCAATAAAGATTGATGATAAGCTCTA
TATTTACCTGGAATATGTGGAGTCTTTGAAGCATGCATGTACTGGTGTAGGAAGCTCATTATGATAATAAGCTCCATGGTGGAGAGTTTTTAAACCATTAATATACTGGTCAAGGTATTGATAACCAGACAGAAAGTTCAGGCCCTGGCTTCTCGAATCTTTAGAAAGTTAGAAGCATTGCTATTTTCTCATCAGGTAAA
TTTTCTGGGGCAAACCCCCAGGCACTTCCCCACATTTCGAGGATGGTGCCCAGGGTAAACCCTAGATTCTTCAGGGCACAAGGCCAATCAACAAGGG
>TRINITY_DN46966_c0_g1_i14 from sample A7 / Example unspliced isoform:GAGGGATCCAACTTTTTAGACGTCTGAATTTTTTTAATTACTTTTTATTTTTGGTAACTTATGAGCCAACATCAAATTTTTTTAATTTTTGGTACTTATGAGCCGACGTGAATTTTTTATTTACTTTTTTTTGTAACTTCACATTACATAACGTTACGTGACAATATCTCCCCCATACTGGGCTGTAGAACACCGTGCTA
CTCTTGGTGCAATAATATAGTTGAGATCCAAGTGAGTTTCTTCTGAAGTATTTAGGTTTGTTTTGAGTTATTTTGCGGCTTGCATTTGAGGATGTTGTGTATCTAGTTTATGCAGTTGAGGGTGGATACCTACTTATTCATGCCTACAAGCCTGCTCTAGTGTCTGTTCCTGAACACCAAAGTTGTTCATGGTAGCAAAT
GTGACACGAGGTATGTAATGATTCTATTATTATTTGACTCTATAGTACAATGTCTTTTCTTCTTTATATTTTTCTTGACGCATCAGTTCATTTTATACAGGCATTGTATTTTCAGTATGGGATCAAATTCAGTAATATAGTTGACACTGAGATTGATGATAAGCTCTATATTTACCTGGAATATGTGGAGTCTTTGAAGC
ATGCATGTACTGGTGTAGGAAGCTCATTATGATAATAAGCTCCATGGTGGAGAGTTTTTAAACCATTAATATACTGGTCAAGGTATTGATAACCAGACAGAAAGTTCAGGCCCTGGCTTCTCGAATCTTTAGAAAGTTAGAAGCATTGCTATTTTCTCATCAGgtctggttttctttctccatttcatgaactgtgattt
ttccaggaaggcaagaattgaaagacataacaagaggatgcttctcatgtaattgtgccagtaataggcatatttttctacaaaaataagatagaaatgcttaatttgtggtgtgtagaaatatgatttgattttttgggattttcaatggatatgattatattgatatgggattttctgatacactctgggtgctattt
tgtttccgtgattttggaatccatagaggtttgcagagtagtatataatatatatcagggaccagcttctatcataaagctattgtatcatttcttccaatagaaacttttgaaacttgttgaatcatcatggtgtgtattttaaaaggcacttcttattatcttctagcttcttttgtgttcaggccttcctagcattt
caaacacaaaacaaaacctgctagtttgttaatgacctgctgttttgaatttatctgtgttattgagggtttcagtttgaggtttgaagtttgaaatttgaatagcatccagatttctaggcattttgtgtaaccttcacagatctgatattctttatttgtctttcagttgcatattgtaaatagctaaccaagtaaat
atatatttttcatgatatgatatatctaatttctaccggttgcattgtttctttttctagGTAAATTTTCTGGGGCAAACCCCCAGGCACTTCCCCACATTTCGAGGATGGTGCCCAGGGTAAACCCTAGATTCTTCAGGGCACAAGGCCAATCAACAAGGG
Intron 2 GTATGTAATG ... TTTTATACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 71.28 | 6 | 14.3 | 4.5 |
| A2 | 31.25 | 4.5 | 2 | 1.3 |
| A3 | 91 | 2.3 | 22 | 13.8 |
| A4 | 57.14 | 6 | 8 | 3 |
| A5 | 57.5 | 2.3 | 3 | 3 |
| A6 | 4.46 | 21.5 | 1 | 0.5 |
| A7 | 13.72 | 38.3 | 6 | 3.3 |
| A8 | 18.68 | 30.8 | 7 | 1.5 |
| A9 | 2.45 | 41 | 1 | 3.3 |
| A10 | 5.52 | 34.8 | 2 | 1 |
>TRINITY_DN108291_c0_g1_i6 from sample A2 / Example spliced isoformGGCAACTGGGGAAATCACCGCAAAAGAATGAATAAAGCGCATGAGGGAGTGGAGATGCCGTAACGGTCACAGGCAGCGGATGGCAGCATAGTAGATAAGGGGACAATTGTGTGTATGGACACAACTCATATTTTCGCTACAAAAATGAAGTACACCCCATCAAAAGTGTAATCAGCCTTTTGCTTGCATTATATTTGTGT
AAGGGAGACGGCTTCATGAATCTGTTGTGGGGTACATAGGTCACAGAATAATTGATAAAGAGTTGACAACCAATAAAGTTTATGCAGTTGAGGGTGGATACCTACTTATTCATGCCTACAAGCCTGCTCTAGTGTCTGTTCCTGAACACCAAAGTTGTTCATGGTAGCAAATGTGACACGAGGCATTGTATTTTCAGTAT
GGGATCAAATTCAGTAATATAGTTGACACTGAGGTGAGTTTCAATCTGGTAATACCACATCTCTTTTTTATTGTCAAGGTCCCACATCTCTTTTTTATTGTCAAGGTCTAAATATTGGGAAAAGGGAGAACCTAACTAGTTTGCATTCTTTGTTGTAAGTTTTCCATCTGACATTCCCACCATACCAACTTTTGATAATC
CCTTCTATTAAAGTATATATTTTAATAGCTATTGAAGTTATTTGGTCTTGGACATAAGAAAGGTCTATGCTTGTTTTATTACGCGATCTGAAATTATTCTTTAAGGAACACAATTGATGGGTATCATGT
>TRINITY_DN108291_c0_g1_i3 from sample A2 / Example unspliced isoform:TGAGTTTCTTCTGAAGTATTTAGGTTTGTTTTGAGTTATTTTGCGGCTTGCATTTGAGGATGTTGTGTATCTAGTTTATGCAGTTGAGGGTGGATACCTACTTATTCATGCCTACAAGCCTGCTCTAGTGTCTGTTCCTGAACACCAAAGTTGTTCATGGTAGCAAATGTGACACGAGgtatgtaatgattctattatta
tttgactctatagtacaatgtcttttcttctttatatttttcttgacgcatcagttcattttatacagGCATTGTATTTTCAGTATGGGATCAAATTCAGTAATATAGTTGACACTGAGGTGAGTTTCAATCTGGTAATACCACATCTCTTTTTTATTGTCAAGGTCCCACATCTCTTTTTTATTGTCAAGGTCTAAATA
TTGGGAAAAGGGAGAACCTAACTAGTTTGCATTCTTTGTTGTAAGTTTTCCATCTGACATTCCCACCATACCAACTTTTGATAATCCCTTCTATTAAAGTATATATTTTAATAGCTATTGAAGTTATTTGGTCTTGGACATAAGAAAGGTCTATGCTTGTTTTATTACGCGATCTGAAATTATTCTTTAAGGAACACAAT
TGATGGGTATCATGT
Intron 3 GTGATGCCCT ... CTCAATTGAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 50.16 | 25.8 | 0 | 26 |
| A2 | 59.46 | 15 | 4.2 | 22 |
| A3 | 58.62 | 12 | 0.2 | 17 |
| A4 | 56.67 | 13 | 2 | 17 |
| A5 | 66.67 | 3 | 0 | 6 |
| A6 | 40.78 | 50.8 | 1 | 35 |
| A7 | 43.16 | 32.9 | 1 | 25 |
| A8 | 38.43 | 46.5 | 0.1 | 29 |
| A9 | 38.01 | 51.8 | 1 | 31.8 |
| A10 | 32.15 | 52.8 | 0 | 25 |
>TRINITY_DN108291_c0_g1_i6 from sample A2 / Example spliced isoformGGCAACTGGGGAAATCACCGCAAAAGAATGAATAAAGCGCATGAGGGAGTGGAGATGCCGTAACGGTCACAGGCAGCGGATGGCAGCATAGTAGATAAGGGGACAATTGTGTGTATGGACACAACTCATATTTTCGCTACAAAAATGAAGTACACCCCATCAAAAGTGTAATCAGCCTTTTGCTTGCATTATATTTGTGT
AAGGGAGACGGCTTCATGAATCTGTTGTGGGGTACATAGGTCACAGAATAATTGATAAAGAGTTGACAACCAATAAAGTTTATGCAGTTGAGGGTGGATACCTACTTATTCATGCCTACAAGCCTGCTCTAGTGTCTGTTCCTGAACACCAAAGTTGTTCATGGTAGCAAATGTGACACGAGGCATTGTATTTTCAGTAT
GGGATCAAATTCAGTAATATAGTTGACACTGAGGTGAGTTTCAATCTGGTAATACCACATCTCTTTTTTATTGTCAAGGTCCCACATCTCTTTTTTATTGTCAAGGTCTAAATATTGGGAAAAGGGAGAACCTAACTAGTTTGCATTCTTTGTTGTAAGTTTTCCATCTGACATTCCCACCATACCAACTTTTGATAATC
CCTTCTATTAAAGTATATATTTTAATAGCTATTGAAGTTATTTGGTCTTGGACATAAGAAAGGTCTATGCTTGTTTTATTACGCGATCTGAAATTATTCTTTAAGGAACACAATTGATGGGTATCATGT
>TRINITY_DN108291_c0_g1_i1 from sample A2 / Example unspliced isoform:GGCAACTGGGGAAATCACCGCAAAAGAATGAATAAAGCGCATGAGGGAGTGGAGATGCCGTAACGGTCACAGGCAGCGGATGGCAGCATAGTAGATAAGgtgatgccctccctgctttttcactgaaacggtcatatatcatgttattgttggctatatattcatatttcttgttggatgtatatcattcagatctcttt
tcttcacgtctgtctgtatttgtctcgaggtattttgggtattttttgccatggattttcttctttaacagaggctttgctggtatgtttgtctgcttccgttcgttcatttttcttttcatttgtttgttttgggtgttgtatgttatatggttttgcaggttttttcattttcttgtatgtttttgggatccactttc
tctgcatgcatgcattccttttcttccctgcctggtttggtattttttgggtacctggtccacctcagagttatattacaagttcaaatgttgacaatacagagctggacttctctacgtcttgggaatcatgtttgattactgatacaacatattaacattgggattgattttttcattaagaggcttatttggtggta
attttgatggaggtgtatcgtgtttcactaaaacacatttccttagtatcctggcaaggatttctgggaatctcaattgagGGGACAATTGTGTGTATGGACACAACTCATATTTTCGCTACAAAAATGAAGTACACCCCATCAAAAGTGTAATCAGCCTTTTGCTTGCATTATATTTGTGTAAGGGAGACGGCTTCATG
AATCTGTTGTGGGGTACATAGGTCACAGAATAATTGATAAAGAGTTGACAACCAATAAAGGTGGATTTGGCAGGAGGATATTACTACTCACGAAACAATGTAAAGTTTGATTTTTCAATAGATTTCACT