sp|S4UX02|CYPH1_SALMI ----> Ferruginol synthase

Intron 1 GTAAGCAATT ... GACGATACAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	32.87	48	21	26
A2	30.43	24	13	8
A3	19.61	41	13	7
A4	34.52	55	21	37
A5	58.62	12	21	13
A6	5.26	18	0	2
A7	7.87	41	3	4
A8	9.76	37	4	4
A9	8	23	3	1
A10	5.26	27	2	1

>TRINITY_DN110816_c2_g1_i1 from sample A3 / Example spliced isoform

CTGAGAGGGAGGCCGACGGTTTCTTTCTTATTTGTTTTTTCAATCCAATTAAGGCCTGCTCTACTCTTCGTCCATGCTTCCTGAGGGCTGCGTTTCCTTCTTTTCAGCATAGGATGCTATGTATAGGAGCTTGTGTGTGGTCATAGTTACTTGCGAAACCTAAGACTTGAGAGGGAGGAGGGAGGTCTGGCGTGGTCTCG
GTTTGGAGCGTGAGATCTGAGACTATTTTCGTGGATTCATGGCGTTGCTTACTTTAGTTGGACACTGTATGGTGGATCCAGTGGTAGATCCAGCATCAGGTGCAGGTACGGATCCATAGCAAGCACCTCCAGTCCCAGGCGTTTAGGACTGCTACCAAGATTGAATGGCAAGGCAGGATGGAATTAATGGCTTTAATGGC
TTTCTGTGATCGATTTAATGGCTTTTTTTTCTGTCTTTCATGAATTGTTTTAATCTTTCATGATAATCATGTATGATTTATGAAGAACAAAAACTATAGGTGAAGAATTTATTCAATCTCGTGTCTAATTGTCAAGGATTCTTTTATTTATCTTCTTTGGTGGATTCTTCTGGCATATATATTTGTTTTAGGGTTTGATT
TTTTTTTTTGTCTAGTGTCTAATTTGTTTAGGGTTTATCCTTCTTTTAGGCGTAGGGTGCTATGTTTCCCTATTTCTGTTGCATACGTTGGTTAGACTCTTGGTTTTTTTATGTGTGGAGGAGAAAGAGGTACTTCAGGCTTCCTCCCGGTCCTGTTGGGTGGCCTATTCTGGTAAATCTGTTGCAGGTGGGTAACGAAG
CCCCTCA

>TRINITY_DN110816_c2_g1_i2 from sample A3 / Example unspliced isoform:

CTGAGAGGGAGGCCGACGGTTTCTTTCTTATTTGTTTTTTCAATCCAATTAAGGCCTGCTCTACTCTTCGTCCATGCTTCCTGAGGGCTGCGTTTCCTTCTTTTCAGCATAGGATGCTATGTATAGGAGCTTGTGTGTGGTCATAGTTACTTGCGAAACCTAAGACTTGAGAGGGAGGAGGGAGGTCTGGCGTGGTCTCG
GTTTGGAGCGTGAGATCTGAGACTATTTTCGTGGATTCATGGCGTTGCTTACTTTAGTTGGACACTGTATGGgtaagcaattcatacacatgaaaattcaatttggctgtgtcttgatgatatcttttatttaattaattttgctgttgtcttgatgacgatacagTGGATCCAGTGGTAGATCCAGCATCAGGTGCAGG
TACGGATCCATAGCAAGCACCTCCAGTCCCAGGCGTTTAGGACTGCTACCAAGATTGAATGGCAAGGCAGGATGGAATTAATGGCTTTAATGGCTTTCTGTGATCGATTTAATGGCTTTTTTTTCTGTCTTTCATGAATTGTTTTAATCTTTCATGATAATCATGTATGATTTATGAAGAACAAAAACTATAGGTGAAGA
ATTTATTCAATCTCGTGTCTAATTGTCAAGGATTCTTTTATTTATCTTCTTTGGTGGATTCTTCTGGCATATATATTTGTTTTAGGGTTTGATTGTGGACCGTTTTGATTTTTTTAGGGTTTATTCTTCTTTTCGGCGTAGGGTTTGATTTTGGACCATTTTGATTTTTTTAGGGTTTATCCTTCTTCTTGGGAAATCTG
TTGCAGGTGATCTCGTCTTTCACCATGGCAAAGGAGGTTCTCAAAACCCATAATCGTGACGCAGGAAGCCAAGGTTCTTTTCTGTGTAGAGGCGGGAAGCTCTGC

Intron 2 GCAGGATGGA ... ATTTTTTTAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	75.44	7	17	26
A2	45.45	3	3	2
A3	72.88	8	24	19
A4	69.81	8	20	17
A5	77.78	2	6	8
A6	62.5	3	4	6
A7	44.44	10	12	4
A8	63.64	6	12	9
A9	52	6	8	5
A10	47.83	6	9	2

>TRINITY_DN44631_c0_g2_i7 from sample A9 / Example spliced isoform

CTGAGAGGGAGGCCGACGGTTTCTTTCTTATTTGTTTTTTCAATCCAATTAAGGCCTGCTCTACTCTTCGTCCATGCTTCCTGAGGGCTGCGTTTCCTTCTTTTCAGCATAGGATGCTATGTATAGGAGCTTGTGTGTGGTCATAGTTACTTGCGAAACCTAAGACTTGAGAGGGAGGAGGGAGGTCTGGCGTGGTCTCG
GTTTGGAGCGTGAGATCTGAGACTATTTTCGTGGAGTCATGGCGTTGCTTACTTTACTTGGACACTTGGATCCAGTGGTAGATCCAGCATCAGGTGCAGGTACGGATCCATAGCAAGCACCTCCAGTCCCAGGCGTTTAGGACTGCTACCAAGATTGAATGGCAAGGGTTTATCCTTCTTCTTGGGAAATCTGTTGCAGG
TGATCTCGTCTTTCACCATGGCAAAGGAGGTTCTCAAAACCCAGTTCCCTGC

>TRINITY_DN44631_c0_g2_i3 from sample A9 / Example unspliced isoform:

CTGAGAGGGAGGCCGACGGTTTCTTTCTTATTTGTTTTTTCAATCCAATTAAGGCCTGCTCTACTCTTCGTCCATGCTTCCTGAGGGCTGCGTTTCCTTCTTTTCAGCATAGGATGCTATGTATAGGAGCTTGTGTGTGGTCATAGTTACTTGCGAAACCTAAGACTTGAGAGGGAGGAGGGAGGTCTGGCGTGGTCTCG
GTTTGGAGCGTGAGATCTGAGACTATTTTCGTGGAGTCATGGCGTTGCTTACTTTACTTGGACACTTGGATCCAGTGGTAGATCCAGCATCAGGTGCAGGTACGGATCCATAGCAAGCACCTCCAGTCCCAGGCGTTTAGGACTGCTACCAAGATTGAATGGCAAGgcaggatggaattaatggctttaatggctttctg
tgatcgatttaatggcttttttttctgtctttcatgaattgttttaatctttcatgataatcatgtatgatttatgaagaacaaaaactataggtgaagaatttattcaatctcgtgtctaattgtcaaggattcttttatttatcttctttggtggattcttctggcatatatatttgttttagggtttgattgtggac
cgttttgatttttttagggtttattcttcttttcggcgtagggtttgattttggaccattttgatttttttagGGTTTATCCTTCTTCTTGGGAAATCTGTTGCAGGTGATCTCGTCTTTCACCATGGCAAAGGAGGTTCTCAAAACCCAGTTCCCTGC