sp|Q9C720|TMN6_ARATH ----> Transmembrane 9 superfamily member 6
Intron 1 GTAGCTTTGA ... TCTTTTATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 50 | 25 | 25 | 3 |
| A2 | 42.11 | 22 | 16 | 8 |
| A3 | 47.14 | 37 | 33 | 11 |
| A4 | 47.22 | 19 | 17 | 3 |
| A5 | 52.17 | 11 | 12 | 1 |
| A6 | 46.97 | 35 | 31 | 6 |
| A7 | 48.57 | 54 | 51 | 6 |
| A8 | 47.76 | 35 | 32 | 5 |
| A9 | 43.85 | 73 | 57 | 12 |
| A10 | 52.08 | 46 | 50 | 6 |
>TRINITY_DN32757_c0_g1_i1 from sample A8 / Example spliced isoformCGTCCCCATTACGACCTAAAATCTTTGGCAATTGCCCCACCGGTTTGGATAATTCTCCCTTTTATATATATTTACGATCTTTCTCACTAATATTCTATCAATTTTTTCACGAAACCCTTCGGCCTCCTAATAATCGATGGAAACATCCGTACAACGTGAACGGGGATTTCTACTTTTGCTAAATTAATAATCGATGGAAC
GAGAGAAGGGGAGTTGGTATGCACCCGAGTTTGTGTCTGAACAACAAAAACCTTCATCGTTCTTTCCCTGTTTGTTTCTGTGCATCCACGATGTCTGAAGTTCGAGTCTTCAAATGTCCCATTGTCGGATGAGTTCTTCTTCATAGGGTTTCTTCTATCAGATCAGATCAGATCACCCTGGAGATGGCGCACGGAAATGG
CATGGAGTGGTCTGGCAAGATCAAATGCTCATACAAGACGGCCACAATGGTCCTATGTGCCGGCAATTTGGTAGTGGCTCTTTACGTTTTGCATTCTTTACTCACTCCTTTGTACATAATAACCTCCTCTTCTCTCGCCGGCCCCGCCAATGACGGTCACAATTTATTCCAAGGAAATCATTTGAATTATGTGTACGTCT
TCAATTTATCATACGGACTTATAACTTCGCTGGCTCAGCTGCAAAGTTTACAGAGGACGAGCTTAAACAAATGAGTGAAGCTATTACAGTCCGGCGAGCGTCAGAGCCTGTCGATCTGATTCGAAGGGTGAAGGAAATTGAAGAGGAGTCTTATAGGGAAGCTGTGAGGGAGAAGCGATCGCATTCTACCATGGTGAAGC
TCGCTCACGAGCTTCTGCAACAATTGAAAGAGTTTAAGGGCGACGGCGATTCAGACGAACAAGAAGCCCTGGAAGAGTGGCGAAAGAAAAAACTTGAAGAAGCTAAGAAACAGGAAGCAATGAAAGGCAGTGTGAATTCCTCCAGGCAGGCCGAAGATACTGAGATGGTGGCCAAAGTATTGGAGACTGACTGGGGCCCT
GTGTTGGAGGAAGCTGGCTTCTCATTACCTCCTGAAGTTTCAAGCAAGGGTAGTAATGGAAAGATGCTGGAGGATGGACCTGAGATTGAAGATGGAATCATACCTGGTAGGCCACTTCCTTCTGAATGTCATGCAGAACCGCATACAGACTATGATGGAGCTGCAGTTAAATGGGGTCTGATGCACCATAAAGAAAGTGC
TGCAGATTGTTGTCAGGCTTGCTTGGACCAAGCAAAAAATGCTAAACAAGGTGAAAAGAAGTGTAACATTTGGGTTTATTGTCCATTTGAACCTGGTTGCTATTCTCCAGATATATATCAGCACAAGCATCGGGAATGCTGGCTGAAGCAGGCTGATCATCCAAAGCTCAACTTCAAGGGCAAATATAGTGAAGCATATA
GACGGGAACATCCAACTGCACCAGTGGTGGTTCCCTGGGTTTCTGGTGTGACTGGTGGTTGAATGGCATTTGGATGGATTCTATTGATAAACTGTTTGGCGAATACAGAGAGTTAGAAGCAAGCTGAGAGTTTTGGGACCAGGTTCTCCACTAAACTTGTACGGAGTTTGGATCTCATTGATAGAGTGCATATGCATGTT
CTATACAGCAGCAGCTTTATTTCTTTCCTGTCTTCAATTTTGAAATCTATTGTTGCAAGGATGTCCCAAGGATCAATTATGGTTGAAATGTGCACATATTTTATTTTTTGCTTTATTTGTTCTTACAGAAATTTATTGCAATTGGTCTTTGAGTCACATTTTCTGAGAATTGCTTGTAGTATCAGAGAGAGGTTGAATGA
CATCAATTTCAAGATGGAAGCAATTTTTTTTGTATTCTCGAACTTCATTTCTAATACCCTCATTCAAAAATGCAGATTCTTGTTTGAGAACATATCAT
>TRINITY_DN32757_c0_g1_i2 from sample A8 / Example unspliced isoform:CGTCCCCATTACGACCTAAAATCTTTGGCAATTGCCCCACCGGTTTGGATAATTCTCCCTTTTATATATATTTACGATCTTTCTCACTAATATTCTATCAATTTTTTCACGAAACCCTTCGGCCTCCTAATAATCGATGGAAACATCCGTACAACGTGAACGGGGATTTCTACTTTTGCTAAATTAATAATCGATGGAAC
GAGAGAAGGGGAGTTGGTATGCACCCGAGTTTGTGTCTGAACAACAAAAACCTTCATCGTTCTTTCCCTGTTTGTTTCTGTGCATCCACGATGTCTGAAGTTCGAGTCTTCAAATGTCCCATTGTCGGATGAGTTCTTCTTCATAGGGTTTCTTCTATCAGATCAGATCAGATCACCCTGGAGATGGCGCACGGAAATGG
CATGGAGTGGTCTGGCAAGATCAAATGCTCATACAAGACGGCCACAATGGTCCTATGTGCCGGCAATTTGGTAGTGGCTCTTTACGTTTTGCATTCTTTACTCACTCCTTTGTACATAATAACCTCCTCTTCTCTCGCCGGCCCCGCCAATGACGGTCACAATTTATTCCAAGgtagctttgaacagtctaaactgataa
tcacaagaatctgttttcttcttggattggtaatttcatttttgctggccaatggtcacgattccaacactcctgctcttttatagGAAATCATTTGAATTATGTGTACGTCTTCAATTTATCATACGGACTTATAACTTCGCTGGCTCAGCTGCAAAGTTTACAGAGGACGAGCTTAAACAAATGAGTGAAGCTATTAC
AGTCCGGCGAGCGTCAGAGCCTGTCGATCTGATTCGAAGGGTGAAGGAAATTGAAGAGGAGTCTTATAGGGAAGCTGTGAGGGAGAAGCGATCGCATTCTACCATGGTGAAGCTCGCTCACGAGCTTCTGCAACAATTGAAAGAGTTTAAGGGCGACGGCGATTCAGACGAACAAGAAGCCCTGGAAGAGTGGCGAAAGA
AAAAACTTGAAGAAGCTAAGAAACAGGAAGCAATGAAAGGCAGTGTGAATTCCTCCAGGCAGGCCGAAGATACTGAGATGGTGGCCAAAGTATTGGAGACTGACTGGGGCCCTGTGTTGGAGGAAGCTGGCTTCTCATTACCTCCTGAAGTTTCAAGCAAGGGTAGTAATGGAAAGATGCTGGAGGATGGACCTGAGATT
GAAGATGGAATCATACCTGGTAGGCCACTTCCTTCTGAATGTCATGCAGAACCGCATACAGACTATGATGGAGCTGCAGTTAAATGGGGTCTGATGCACCATAAAGAAAGTGCTGCAGATTGTTGTCAGGCTTGCTTGGACCAAGCAAAAAATGCTAAACAAGGTGAAAAGAAGTGTAACATTTGGGTTTATTGTCCATT
TGAACCTGGTTGCTATTCTCCAGATATATATCAGCACAAGCATCGGGAATGCTGGCTGAAGCAGGCTGATCATCCAAAGCTCAACTTCAAGGGCAAATATAGTGAAGCATATAGACGGGAACATCCAACTGCACCAGTGGTGGTTCCCTGGGTTTCTGGTGTGACTGGTGGTTGAATGGCATTTGGATGGATTCTATTGA
TAAACTGTTTGGCGAATACAGAGAGTTAGAAGCAAGCTGAGAGTTTTGGGACCAGGTTCTCCACTAAACTTGTACGGAGTTTGGATCTCATTGATAGAGTGCATATGCATGTTCTATACAGCAGCAGCTTTATTTCTTTCCTGTCTTCAATTTTGAAATCTATTGTTGCAAGGATGTCCCAAGGATCAATTATGGTTGAA
ATGTGCACATATTTTATTTTTTGCTTTATTTGTTCTTACAGAAATTTATTGCAATTGGTCTTTGAGTCACATTTTCTGAGAATTGCTTGTAGTATCAGAGAGAGGTTGAATGACATCAATTTCAAGATGGAAGCAATTTTTTTTGTATTCTCGAACTTCATTTCTAATACCCTCATTCAAAAATGCAGATTCTTGTTTGA
GAACATATCAT
Intron 2 GCAGGAAGAG ... TTTTCTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 21.91 | 139 | 39 | 12 |
| A2 | 24.72 | 67 | 22 | 7.3 |
| A3 | 15.92 | 169 | 32 | 14.4 |
| A4 | 16.67 | 80 | 16 | 6.3 |
| A5 | 18.06 | 59 | 13 | 2.5 |
| A6 | 20.46 | 377 | 97 | 43.9 |
| A7 | 19.36 | 554 | 133 | 67.3 |
| A8 | 19.04 | 489 | 115 | 70.5 |
| A9 | 18.32 | 502 | 112.6 | 74.1 |
| A10 | 20.35 | 458 | 117 | 70.3 |
>TRINITY_DN32757_c0_g1_i6 from sample A8 / Example spliced isoformCGTCCCCATTACGACCTAAAATCTTTGGCAATTGCCCCACCGGTTTGGATAATTCTCCCTTTTATATATATTTACGATCTTTCTCACTAATATTCTATCAATTTTTTCACGAAACCCTTCGGCCTCCTAATAATCGATGGAAACATCCGTACAACGTGAACGGGGATTTCTACTTTTGCTAAATTAATAATCGATGGAAC
GAGAGAAGGGGAGTTGGTATGCACCCGAGTTTGTGTCTGAACAACAAAAACCTTCATCGTTCTTTCCCTGTTTGTTTCTGTGCATCCACGATGTCTGAAGTTCGAGTCTTCAAATGTCCCATTGTCGGATGAGTTCTTCTTCATAGGGTTTCTTCTATCAGATCAGATCAGATCACCCTGGAGATGGCGCACGGAAATGG
CATGGAGTGGTCTGGCAAGATCAAATGCTCATACAAGACGGCCACAATGGTCCTATGTGCCGGCAATTTGGTAGTGGCTCTTTACGTTTTGCATTCTTTACTCACTCCTTTGTACATAATAACCTCCTCTTCTCTCGCCGGCCCCGCCAATGACGGTCACAATTTATTCCAAGCTGCAAAGTTTACAGAGGACGAGCTTA
AACAAATGAGTGAAGCTATTACAGTCCGGCGAGCGTCAGAGCCTGTCGATCTGATTCGAAGGGTGAAGGAAATTGAAGAGGAGTCTTATAGGGAAGCTGTGAGGGAGAAGCGATCGCATTCTACCATGGTGAAGCTCGCTCACGAGCTTCTGCAACAATTGAAAGAGTTTAAGGGCGACGGCGATTCAGACGAACAAGAA
GCCCTGGAAGAGTGGCGAAAGAAAAAACTTGAAGAAGCTAAGAAACAGGAAGCAATGAAAGGCAGTGTGAATTCCTCCAGGCAGGCCGAAGATACTGAGATGGTGGCCAAAGTATTGGAGACTGACTGGGGCCCTGTGTTGGAGGAAGCTGGCTTCTCATTACCTCCTGAAGTTTCAAGCAAGGGTAGTAATGGAAAGAT
GCTGGAGGATGGACCTGAGATTGAAGATGGAATCATACCTGGTAGGCCACTTCCTTCTGAATGTCATGCAGAACCGCATACAGACTATGATGGAGCTGCAGTTAAATGGGGTCTGATGCACCATAAAGAAAGTGCTGCAGATTGTTGTCAGGCTTGCTTGGACCAAGCAAAAAATGCTAAACAAGGTGAAAAGAAGTGTA
ACATTTGGGTTTATTGTCCATTTGAACCTGGTTGCTATTCTCCAGATATATATCAGCACAAGCATCGGGAATGCTGGCTGAAGCAGGCTGATCATCCAAAGCTCAACTTCAAGGGCAAATATAGTGAAGCATATAGACGGGAACATCCAACTGCACCAGTGGTGGTTCCCTGGGTTTCTGGTGTGACTGGTGGTTGAATG
GCATTTGGATGGATTCTATTGATAAACTGTTTGGCGAATACAGAGAGTTAGAAGCAAGCTGAGAGTTTTGGGACCAGGTTCTCCACTAAACTTGTACGGAGTTTGGATCTCATTGATAGAGTGCATATGCATGTTCTATACAGCAGCAGCTTTATTTCTTTCCTGTCTTCAATTTTGAAATCTATTGTTGCAAGGATGTC
CCAAGGATCAATTATGGTTGAAATGTGCACATATTTTATTTTTTGCTTTATTTGTTCTTACAGAAATTTATTGCAATTGGTCTTTGAGTCACATTTTCTGAGAATTGCTTGTAGTATCAGAGAGAGGTTGAATGACATCAATTTCAAGATGGAAGCAATTTTTTTTGTATTCTCGAACTTCATTTCTAATACCCTCATTC
AAAAATGCAGATTCTTGTTTGAGAACATATCAT
>TRINITY_DN32757_c0_g1_i4 from sample A8 / Example unspliced isoform:CGTCCCCATTACGACCTAAAATCTTTGGCAATTGCCCCACCGGTTTGGATAATTCTCCCTTTTATATATATTTACGATCTTTCTCACTAATATTCTATCAATTTTTTCACGAAACCCTTCGGCCTCCTAATAATCGATGGAAACATCCGTACAACGTGAACGGGGATTTCTACTTTTGCTAAATTAATAATCGATGGAAC
GAGAGAAGGGGAGTTGGTATGCACCCGAGTTTGTGTCTGAACAACAAAAACCTTCATCGTTCTTTCCCTGTTTGTTTCTGTGCATCCACGATGTCTGAAGTTCGAGTCTTCAAATGTCCCATTGTCGGATGAGTTCTTCTTCATAGGGTTTCTTCTATCAGATCAGATCAGATCACCCTGGAGATGGCGCACGGAAATGG
CATGGAGTGGTCTGGCAAGATCAAATGCTCATACAAGACGGCCACAATGGTCCTATGTGCCGGCAATTTGGTAGTGGCTCTTTACGTTTTGCATTCTTTACTCACTCCTTTGTACATAATAACCTCCTCTTCTCTCGCCGGCCCCGCCAATGACGGTCACAATTTATTCCAAGCTGCAAAGTTTACAGAGGACGAGCTTA
AACAAATGAGTGAAGCTATTACAGTCCGGCGAGCGTCAGAGCCTGTCGATCTGATTCGAAGGGTGAAGGAAATTGAAGAGGAGTCTTATAGGGAAGCTGTGAGGGAGAAGCGATCGCATTCTACCATGGTGAAGCTCGCTCACGAGCTTCTGCAACAATTGAAAGAGTTTAAGGGCGACGGCGATTCAGACGAACAAGAA
GCCCTGGAAGAGTGGCGAAAGAAAAAACTTGAAGAAGCTAAGAAACAGGAAGCAATGAAAGGCAGTGTGAATTCCTCCAGGCAGGCCGAAGATACTGCTCCCCAAAATTTTGGCATGTGTTTAAACTTCATACATTATGTATTGGGGGTCCCATGAACAGAGATGGTGGCCAAAGTATTGGAGACTGACTGGGGCCCTGT
GTTGGAGGAAGCTGGCTTCTCATTACCTCCTGAAGTTTCAAGCAAGGGTAGTAATGGAAAGATGCTGGAGGATGGACCTGAGATTGgcaggaagagttcagagaaatctaagttcaagatggtgctagtatagcctcatgcattgtttgatatcttttctgcagAAGATGGAATCATACCTGGTAG
Intron 3 GTAGTGGCTC ... GCTGGCTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 49.73 | 46 | 53 | 38 |
| A2 | 60.29 | 27 | 67 | 15 |
| A3 | 55.56 | 48 | 93 | 27 |
| A4 | 47.37 | 35 | 47 | 16 |
| A5 | 48.84 | 22 | 31 | 11 |
| A6 | 54.46 | 46 | 86 | 24 |
| A7 | 58.29 | 78 | 161 | 57 |
| A8 | 56.35 | 43 | 82 | 29 |
| A9 | 51.45 | 92 | 143 | 52 |
| A10 | 51.52 | 88 | 149 | 38 |
>TRINITY_DN104519_c0_g1_i1 from sample A2 / Example spliced isoformATTCTATCAATTTTTTCACGAAACCCTTCGGCCTCCTAATAATCGATGGAAACATCCGTACAACGTGAACGGGGATTTCTACTTTTGCTAAATTAATAATCGATGGAACGAGAGAAGGGGAGTTGGTATGCACCCGAGTTTGTGTCTGAACAACAAAAACCTTCATCGTTCTTTCCCTGTTTGTTTCTGTGCATCCACGA
TGTCTGAAGTTCGAGTCTTCAAATGTCCCATTGTCGGATGAGTTCTTCTTCATAGGGTTTCTTCTATCAGATCAGATCAGATCACCCTGGAGATGGCGCACGGAAATGGCATGGAGTGGTCTGGCAAGATCAAATGCTCATACAAGACGGCCACAATGGTCCTATGTGCCGGCAATTTGCTGCAAAGTTTACAGAGGACG
AGCTTAAACAAATGAGTGAAGCTATTACAGTCCGGCGAGCGTCAGAGCCTGTCGATCTGATTCGAAGGGTGAAGGAAATTGAAGAGGAGTCTTATAGGGAAGCTGTGAGGGAGAAGCGATCGCATTCTACCATGGTGAAGCTCGCTCACGAGCTTCTGCAACAATTGAAAGAGTTTAAGGGCGACGGCGATTCAGACGAA
CAAGAAGCCCTGGAAGAGTGGCGAAAGAAAAAACTTGAAGAAGCTAAGAAACAGGAAGCAATGAAAGGCAGTGTGAATTCCTCCAGGCAGGCCGAAGATACTGAGATGGTGGCCAAAGTATTGGAGACTGACTGGGGCCCTGTGTTGGAGGAAGCTGGCTTCTCATTACCTCCTGAAGTTTCAAGCAAGGGTAGTAATGG
AAAGATGCTGGAGGATGGACCTGAGATTGAAGATGGAATCATACCTGGTAGGCCACTTCCTTCTGAATGTCATGCAGAACCGCATACAGACTATGATGGAGCTGCAGTTAAATGGGGTCTGATGCACCATAAAGAAAGTGCTGCAGATTGTTGTCAGGCTTGCTTGGACCAAGCAAAAAATGCTAAACAAGGTGAAAAGA
AGTGTAACATTTGGGTTTATTGTCCATTTGAACCTGGTTGCTATTCTCCAGATATATATCAGCACAAGCATCGGGAATGCTGGCTGAAGCAGGCTGATCATCCAAAGCTCAACTTCAAGGGCAAATATAGTGAAGCATATAGACGGGAACATCCAACTGCACCAGTGGTGGTTCCCTGGGTTTCTGGTGTGACTGGTGGT
TGAATGGCATTTGGATGGATTCTATTGATAAACTGTTTGGCGAATACAGAGAGTTAGAAGCAAGCTGAGAGTTTTGGGACCAGGTTCTCCACTAAACTTGTACGGAGTTTGGATCTCATTGATAGAGTGCATATGCATGTTCTATACAGCAGCAGCTTTATTTCTTTCCTGTCTTCAATTTTGAAATCTATTGTTGCAAG
GATGTCCCAAGGATCAATTATGGTTGAAATGTGCACATATTTTATTTTTTGCTTTATTTGTTCTTACAGAAATTTATTGCAATTGGTCTTTGAGTCACATTTTCTGAGAATTGCTTGTAGTATCAGAGAGAGGTTGAATGACATCAATTTCAAGATGGAAGCAATTTTTTTTGTATTCTCGAACTTCATTTCTAATACCC
TCATTCAAAAATGC
>TRINITY_DN104519_c0_g1_i5 from sample A2 / Example unspliced isoform:ATTCTATCAATTTTTTCACGAAACCCTTCGGCCTCCTAATAATCGATGGAAACATCCGTACAACGTGAACGGGGATTTCTACTTTTGCTAAATTAATAATCGATGGAACGAGAGAAGGGGAGTTGGTATGCACCCGAGTTTGTGTCTGAACAACAAAAACCTTCATCGTTCTTTCCCTGTTTGTTTCTGTGCATCCACGA
TGTCTGAAGTTCGAGTCTTCAAATGTCCCATTGTCGGATGAGTTCTTCTTCATAGGGTTTCTTCTATCAGATCAGATCAGATCACCCTGGAGATGGCGCACGGAAATGGCATGGAGTGGTCTGGCAAGATCAAATGCTCATACAAGACGGCCACAATGGTCCTATGTGCCGGCAATTTGgtagtggctctttacgttttg
cattctttactcactcctttgtacataataacctcctcttctctcgccggccccgccaatgacggtcacaatttattccaaggaaatcatttgaattatgtgtacgtcttcaatttatcatacggacttataacttcgctggctcagCTGCAAAGTTTACAGAGGACGAGCTTAAACAAATGAGTGAAGCTATTACAGTC
CGGCGAGCGTCAGAGCCTGTCGATCTGATTCGAAGGGTGAAGGAAATTGAAGAGGAGTCTTATAGGGAAGCTGTGAGGGAGAAGCGATCGCATTCTACCATGGTGAAGCTCGCTCACGAGCTTCTGCAACAATTGAAAGAGTTTAAGGGCGACGGCGATTCAGACGAACAAGAAGCCCTGGAAGAGTGGCGAAAGAAAAA
ACTTGAAGAAGCTAAGAAACAGGAAGCAATGAAAGGCAGTGTGAATTCCTCCAGGCAGGCCGAAGATACTGAGATGGTGGCCAAAGTATTGGAGACTGACTGGGGCCCTGTGTTGGAGGAAGCTGGCTTCTCATTACCTCCTGAAGTTTCAAGCAAGGGTAGTAATGGAAAGATGCTGGAGGATGGACCTGAGATTGAAG
ATGGAATCATACCTGGTAGGCCACTTCCTTCTGAATGTCATGCAGAACCGCATACAGACTATGATGGAGCTGCAGTTAAATGGGGTCTGATGCACCATAAAGAAAGTGCTGCAGATTGTTGTCAGGCTTGCTTGGACCAAGCAAAAAATGCTAAACAAGGTGAAAAGAAGTGTAACATTTGGGTTTATTGTCCATTTGAA
CCTGGTTGCTATTCTCCAGATATATATCAGCACAAGCATCGGGAATGCTGGCTGAAGCAGGCTGATCATCCAAAGCTCAACTTCAAGGGCAAATATAGTGAAGCATATAGACGGGAACATCCAACTGCACCAGTGGTGGTTCCCTGGGTTTCTGGTGTGACTGGTGGTTGAATGGCATTTGGATGGATTCTATTGATAAA
CTGTTTGGCGAATACAGAGAGTTAGAAGCAAGCTGAGAGTTTTGGGACCAGGTTCTCCACTAAACTTGTACGGAGTTTGGATCTCATTGATAGAGTGCATATGCATGTTCTATACAGCAGCAGCTTTATTTCTTTCCTGTCTTCAATTTTGAAATCTATTGTTGCAAGGATGTCCCAAGGATCAATTATGGTTGAAATGT
GCACATATTTTATTTTTTGCTTTATTTGTTCTTACAGAAATTTATTGCAATTGGTCTTTGAGTCACATTTTCTGAGAATTGCTTGTAGTATCAGAGAGAGGTTGAATGACATCAATTTCAAGATGGAAGCAATTTTTTTTGTATTCTCGAACTTCATTTCTAATACCCTCATTCAAAAATGC
Intron 4 GTAGTGGCTC ... GCTGGCTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 54.46 | 46 | 55 | 39 |
| A2 | 71.28 | 27 | 67 | 17 |
| A3 | 66.2 | 48 | 94 | 27 |
| A4 | 56.25 | 35 | 45 | 18 |
| A5 | 58.49 | 22 | 31 | 12 |
| A6 | 64.89 | 46 | 85 | 24 |
| A7 | 68.55 | 78 | 170 | 52 |
| A8 | 65.6 | 43 | 82 | 29 |
| A9 | 61.02 | 92 | 144 | 46 |
| A10 | 63.18 | 88 | 151 | 41 |
>TRINITY_DN35131_c0_g1_i4 from sample A9 / Example spliced isoformAAAATATTTGCCAAATCATACTGTCCCCATTACGACCTAAAATCTTTGGCAATTGCCCCACCGGTTTGGATAATTCTCCCTTTTATATATATTTACGATCTTTCTCACTAATATTCTATCAATTTTTTCACGAAACCCTTCGGCCTCCTAATAATCGATGGAAACATCCGTACAACGTGAACGGGGATTTCTACTTTTGC
TAAATTAATAATCGATGGAACGAGAGAAGGGGAGTTGGTATGCACCCGAGTTTGTGTCTGAACAACAAAAACCTTCATCGTTCTTTCCCTGTTTGTTTCTGTGCATCCACGATGTCTGAAGTTCGAGTCTTCAAATGTCCCATTGTCGGATGAGTTCTTCTTCATAGGGTTTCTTCTATCAGATCAGATCAGATCACCCT
GGAGATGGCGCACGGAAATGGCATGGAGTGGTCTGGCAAGATCAAATGCTCATACAAGACGGCCACAATGGTCCTATGTGCCGGCAATTTGCTGCAAAGTTTACAGAGGACGAGCTTAAACAAATGAGTGAAGCTATTACAGTCCGGCGAGCGTCAGAGCCTGTCGATCTGATTCGAAGGGTGAAGGAAATTGAAGAGGA
GTCTTATAGGGAAGCTGTGAGGGAGAAGCGATCGCATTCTACCATGGTGAAGCTCGCTCACGAGCTTCTGCAACAATTGAAAGAGTTTAAGGGCGACGGCGATTCAGACGAACAAGAAGCCCTGGAAGAGTGGCGAAAGAAAAAACTTGAAGAAGCTAAGAAACAGGAAGCAATGAAAGGCAGTGTGAATTCCTCCAGGC
AGGCCGAAGATACTGAGATGGTGGCCAAAGTATTGGAGACTGACTGGGGCCCTGTGTTGGAGGAAGCTGGCTTCTCATTACCTCCTGAAGTTTCAAGCAAGGGTAGTAATGGAAAGATGCTGGAGGATGGACCTGAGATTGAAGATGGAATCATACCTGGTAGGCCACTTCCTTCTGAATGTCATGCAGAACCGCATACA
GACTATGATGGAGCTGCAGTTAAATGGGGTCTGATGCACCATAAAGAAAGTGCTGCAGATTGTTGTCAGGCTTGCTTGGACCAAGCAAAAAATGCTAAACAAGGTGAAAAGAAGTGTAACATTTGGGTTTATTGTCCATTTGAACCTGGTTGCTATTCTCCAGATATATATCAGCACAAGCATCGGGAATGCTGGCTGAA
GCAGGCTGATCATCCAAAGCTCAACTTCAAGGGCAAATATAGTGAAGCATATAGACGGGAACATCCAACTGCACCAGTGGTGGTTCCCTGGGTTTCTGGTGTGACTGGTGGTTGAATGGCATTTGGATGGATTCTATTGATAAACTGTTTGGCGAATACAGAGAGTTAGAAGCAAGCTGAGAGTTTTGGGACCAGGTTCT
CCACTAAACTTGTACGGAGTTTGGATCTCATTGATAGAGTGCATATGCATGTTCTATACAGCAGCAGCTTTATTTCTTTCCTGTCTTCAATTTTGAAATCTATTGTTGCAAGGATGTCCCAAGGATCAATTATGGTTGAAATGTGCACATATTTTATTTTTTGCTTTATTTGTTCTTACAGAAATTTATTGCAATTGGTC
TTTGAGTCACATTTTCTGAGAATTGCTTGTAGTATCAGAGAGAGGTTGAATGACATCAATTTCAAGATGGAAGCAATTTTTTTTGTATTCTCGAACTTCATTTCTAATACCCTCATTCAAAAATGCAGATTCTTGTTTGAGAACATATCATCC
>TRINITY_DN35131_c0_g1_i5 from sample A9 / Example unspliced isoform:AAAATATTTGCCAAATCATACTGTCCCCATTACGACCTAAAATCTTTGGCAATTGCCCCACCGGTTTGGATAATTCTCCCTTTTATATATATTTACGATCTTTCTCACTAATATTCTATCAATTTTTTCACGAAACCCTTCGGCCTCCTAATAATCGATGGAAACATCCGTACAACGTGAACGGGGATTTCTACTTTTGC
TAAATTAATAATCGATGGAACGAGAGAAGGGGAGTTGGTATGCACCCGAGTTTGTGTCTGAACAACAAAAACCTTCATCGTTCTTTCCCTGTTTGTTTCTGTGCATCCACGATGTCTGAAGTTCGAGTCTTCAAATGTCCCATTGTCGGATGAGTTCTTCTTCATAGGGTTTCTTCTATCAGATCAGATCAGATCACCCT
GGAGATGGCGCACGGAAATGGCATGGAGTGGTCTGGCAAGATCAAATGCTCATACAAGACGGCCACAATGGTCCTATGTGCCGGCAATTTGgtagtggctctttacgttttgcattctttactcactcctttgtacataataacctcctcttctctcgccggccccgccaatgacggtcacaatttattccaaggtagct
ttgaacagtctaaactgataatcacaagaatctgttttcttcttggattggtaatttcatttttgctggccaatggtcacgattccaacactcctgctcttttataggaaatcatttgaattatgtgtacgtcttcaatttatcatacggacttataacttcgctggctcagCTGCAAAGTTTACAGAGGACGAGCTTAA
ACAAATGAGTGAAGCTATTACAGTCCGGCGAGCGTCAGAGCCTGTCGATCTGATTCGAAGGGTGAAGGAAATTGAAGAGGAGTCTTATAGGGAAGCTGTGAGGGAGAAGCGATCGCATTCTACCATGGTGAAGCTCGCTCACGAGCTTCTGCAACAATTGAAAGAGTTTAAGGGCGACGGCGATTCAGACGAACAAGAAG
CCCTGGAAGAGTGGCGAAAGAAAAAACTTGAAGAAGCTAAGAAACAGGAAGCAATGAAAGGCAGTGTGAATTCCTCCAGGCAGGCCGAAGATACTGAGATGGTGGCCAAAGTATTGGAGACTGACTGGGGCCCTGTGTTGGAGGAAGCTGGCTTCTCATTACCTCCTGAAGTTTCAAGCAAGGGTAGTAATGGAAAGATG
CTGGAGGATGGACCTGAGATTGAAGATGGAATCATACCTGGTAGGCCACTTCCTTCTGAATGTCATGCAGAACCGCATACAGACTATGATGGAGCTGCAGTTAAATGGGGTCTGATGCACCATAAAGAAAGTGCTGCAGATTGTTGTCAGGCTTGCTTGGACCAAGCAAAAAATGCTAAACAAGGTGAAAAGAAGTGTAA
CATTTGGGTTTATTGTCCATTTGAACCTGGTTGCTATTCTCCAGATATATATCAGCACAAGCATCGGGAATGCTGGCTGAAGCAGGCTGATCATCCAAAGCTCAACTTCAAGGGCAAATATAGTGAAGCATATAGACGGGAACATCCAACTGCACCAGTGGTGGTTCCCTGGGTTTCTGGTGTGACTGGTGGTTGAATGG
CATTTGGATGGATTCTATTGATAAACTGTTTGGCGAATACAGAGAGTTAGAAGCAAGCTGAGAGTTTTGGGACCAGGTTCTCCACTAAACTTGTACGGAGTTTGGATCTCATTGATAGAGTGCATATGCATGTTCTATACAGCAGCAGCTTTATTTCTTTCCTGTCTTCAATTTTGAAATCTATTGTTGCAAGGATGTCC
CAAGGATCAATTATGGTTGAAATGTGCACATATTTTATTTTTTGCTTTATTTGTTCTTACAGAAATTTATTGCAATTGGTCTTTGAGTCACATTTTCTGAGAATTGCTTGTAGTATCAGAGAGAGGTTGAATGACATCAATTTCAAGATGGAAGCAATTTTTTTTGTATTCTCGAACTTCATTTCTAATACCCTCATTCA
AAAATGCAGATTCTTGTTTGAGAACATATCATCC
Intron 5 GTAGTGGCTC ... TTATTCCAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 59.11 | 46 | 55 | 78 |
| A2 | 69.83 | 27 | 74 | 51 |
| A3 | 65.09 | 48 | 99 | 80 |
| A4 | 59.3 | 35 | 49 | 53 |
| A5 | 58.1 | 22 | 32 | 29 |
| A6 | 65.67 | 46 | 95 | 81 |
| A7 | 68.1 | 78 | 179 | 154 |
| A8 | 68.03 | 43 | 87 | 96 |
| A9 | 61.26 | 92 | 151 | 140 |
| A10 | 63.93 | 88 | 163 | 149 |
>TRINITY_DN104519_c0_g1_i1 from sample A2 / Example spliced isoformATTCTATCAATTTTTTCACGAAACCCTTCGGCCTCCTAATAATCGATGGAAACATCCGTACAACGTGAACGGGGATTTCTACTTTTGCTAAATTAATAATCGATGGAACGAGAGAAGGGGAGTTGGTATGCACCCGAGTTTGTGTCTGAACAACAAAAACCTTCATCGTTCTTTCCCTGTTTGTTTCTGTGCATCCACGA
TGTCTGAAGTTCGAGTCTTCAAATGTCCCATTGTCGGATGAGTTCTTCTTCATAGGGTTTCTTCTATCAGATCAGATCAGATCACCCTGGAGATGGCGCACGGAAATGGCATGGAGTGGTCTGGCAAGATCAAATGCTCATACAAGACGGCCACAATGGTCCTATGTGCCGGCAATTTGCTGCAAAGTTTACAGAGGACG
AGCTTAAACAAATGAGTGAAGCTATTACAGTCCGGCGAGCGTCAGAGCCTGTCGATCTGATTCGAAGGGTGAAGGAAATTGAAGAGGAGTCTTATAGGGAAGCTGTGAGGGAGAAGCGATCGCATTCTACCATGGTGAAGCTCGCTCACGAGCTTCTGCAACAATTGAAAGAGTTTAAGGGCGACGGCGATTCAGACGAA
CAAGAAGCCCTGGAAGAGTGGCGAAAGAAAAAACTTGAAGAAGCTAAGAAACAGGAAGCAATGAAAGGCAGTGTGAATTCCTCCAGGCAGGCCGAAGATACTGAGATGGTGGCCAAAGTATTGGAGACTGACTGGGGCCCTGTGTTGGAGGAAGCTGGCTTCTCATTACCTCCTGAAGTTTCAAGCAAGGGTAGTAATGG
AAAGATGCTGGAGGATGGACCTGAGATTGAAGATGGAATCATACCTGGTAGGCCACTTCCTTCTGAATGTCATGCAGAACCGCATACAGACTATGATGGAGCTGCAGTTAAATGGGGTCTGATGCACCATAAAGAAAGTGCTGCAGATTGTTGTCAGGCTTGCTTGGACCAAGCAAAAAATGCTAAACAAGGTGAAAAGA
AGTGTAACATTTGGGTTTATTGTCCATTTGAACCTGGTTGCTATTCTCCAGATATATATCAGCACAAGCATCGGGAATGCTGGCTGAAGCAGGCTGATCATCCAAAGCTCAACTTCAAGGGCAAATATAGTGAAGCATATAGACGGGAACATCCAACTGCACCAGTGGTGGTTCCCTGGGTTTCTGGTGTGACTGGTGGT
TGAATGGCATTTGGATGGATTCTATTGATAAACTGTTTGGCGAATACAGAGAGTTAGAAGCAAGCTGAGAGTTTTGGGACCAGGTTCTCCACTAAACTTGTACGGAGTTTGGATCTCATTGATAGAGTGCATATGCATGTTCTATACAGCAGCAGCTTTATTTCTTTCCTGTCTTCAATTTTGAAATCTATTGTTGCAAG
GATGTCCCAAGGATCAATTATGGTTGAAATGTGCACATATTTTATTTTTTGCTTTATTTGTTCTTACAGAAATTTATTGCAATTGGTCTTTGAGTCACATTTTCTGAGAATTGCTTGTAGTATCAGAGAGAGGTTGAATGACATCAATTTCAAGATGGAAGCAATTTTTTTTGTATTCTCGAACTTCATTTCTAATACCC
TCATTCAAAAATGC
>TRINITY_DN104519_c0_g1_i2 from sample A2 / Example unspliced isoform:ATTCTATCAATTTTTTCACGAAACCCTTCGGCCTCCTAATAATCGATGGAAACATCCGTACAACGTGAACGGGGATTTCTACTTTTGCTAAATTAATAATCGATGGAACGAGAGAAGGGGAGTTGGTATGCACCCGAGTTTGTGTCTGAACAACAAAAACCTTCATCGTTCTTTCCCTGTTTGTTTCTGTGCATCCACGA
TGTCTGAAGTTCGAGTCTTCAAATGTCCCATTGTCGGATGAGTTCTTCTTCATAGGGTTTCTTCTATCAGATCAGATCAGATCACCCTGGAGATGGCGCACGGAAATGGCATGGAGTGGTCTGGCAAGATCAAATGCTCATACAAGACGGCCACAATGGTCCTATGTGCCGGCAATTTGgtagtggctctttacgttttg
cattctttactcactcctttgtacataataacctcctcttctctcgccggccccgccaatgacggtcacaatttattccaagCTGCAAAGTTTACAGAGGACGAGCTTAAACAAATGAGTGAAGCTATTACAGTCCGGCGAGCGTCAGAGCCTGTCGATCTGATTCGAAGGGTGAAGGAAATTGAAGAGGAGTCTTATAG
GGAAGCTGTGAGGGAGAAGCGATCGCATTCTACCATGGTGAAGCTCGCTCACGAGCTTCTGCAACAATTGAAAGAGTTTAAGGGCGACGGCGATTCAGACGAACAAGAAGCCCTGGAAGAGTGGCGAAAGAAAAAACTTGAAGAAGCTAAGAAACAGGAAGCAATGAAAGGCAGTGTGAATTCCTCCAGGCAGGCCGAAG
ATACTGAGATGGTGGCCAAAGTATTGGAGACTGACTGGGGCCCTGTGTTGGAGGAAGCTGGCTTCTCATTACCTCCTGAAGTTTCAAGCAAGGGTAGTAATGGAAAGATGCTGGAGGATGGACCTGAGATTGAAGATGGAATCATACCTGGTAGGCCACTTCCTTCTGAATGTCATGCAGAACCGCATACAGACTATGAT
GGAGCTGCAGTTAAATGGGGTCTGATGCACCATAAAGAAAGTGCTGCAGATTGTTGTCAGGCTTGCTTGGACCAAGCAAAAAATGCTAAACAAGGTGAAAAGAAGTGTAACATTTGGGTTTATTGTCCATTTGAACCTGGTTGCTATTCTCCAGATATATATCAGCACAAGCATCGGGAATGCTGGCTGAAGCAGGCTGA
TCATCCAAAGCTCAACTTCAAGGGCAAATATAGTGAAGCATATAGACGGGAACATCCAACTGCACCAGTGGTGGTTCCCTGGGTTTCTGGTGTGACTGGTGGTTGAATGGCATTTGGATGGATTCTATTGATAAACTGTTTGGCGAATACAGAGAGTTAGAAGCAAGCTGAGAGTTTTGGGACCAGGTTCTCCACTAAAC
TTGTACGGAGTTTGGATCTCATTGATAGAGTGCATATGCATGTTCTATACAGCAGCAGCTTTATTTCTTTCCTGTCTTCAATTTTGAAATCTATTGTTGCAAGGATGTCCCAAGGATCAATTATGGTTGAAATGTGCACATATTTTATTTTTTGCTTTATTTGTTCTTACAGAAATTTATTGCAATTGGTCTTTGAGTCA
CATTTTCTGAGAATTGCTTGTAGTATCAGAGAGAGGTTGAATGACATCAATTTCAAGATGGAAGCAATTTTTTTTGTATTCTCGAACTTCATTTCTAATACCCTCATTCAAAAATGC
Intron 6 GTAGCTTTGA ... GCTGGCTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 33.33 | 78 | 18.8 | 39 |
| A2 | 25 | 51 | 12 | 17 |
| A3 | 25.23 | 80 | 25.5 | 27 |
| A4 | 25.35 | 53 | 12.8 | 18 |
| A5 | 29.27 | 29 | 9 | 12 |
| A6 | 22.86 | 81 | 23.8 | 24 |
| A7 | 25.24 | 154 | 38.3 | 52 |
| A8 | 23.2 | 96 | 24.3 | 29 |
| A9 | 24.73 | 140 | 43 | 46 |
| A10 | 21.58 | 149 | 38 | 41 |
>TRINITY_DN122064_c0_g2_i3 from sample A3 / Example spliced isoformATTACGACCTAAAATCTTTGGCAATTGCCCCACCGGTTTGGATAATTCTCCCTTTTATATATATTTACGATCTTTCTCACTAATATTCTATCAATTTTTTCACGAAACCCTTCGGCCTCCTAATAATCGATGGAAACATCCGTACAACGTGAACGGGGATTTCTACTTTTGCTAAATTAATAATCGATGGAACGAGAGAA
GGGGAGTTGGTATGCACCCGAGTTTGTGTCTGAACAACAAAAACCTTCATCGTTCTTTCCCTGTTTGTTTCTGTGCATCCACGATGTCTGAAGTTCGAGTCTTCAAATGTCCCATTGTCGGATGAGTTCTTCTTCATAGGGTTTCTTCTATCAGATCAGATCAGATCACCCTGGAGATGGCGCACGGAAATGGCATGGAG
TGGTCTGGCAAGATCAAATGCTCATACAAGACGGCCACAATGGTCCTATGTGCCGGCAATTTGGTAGTGGCTCTTTACGTTTTGCATTCTTTACTCACTCCTTTGTACATAATAACCTCCTCTTCTCTCGCCGGCCCCGCCAATGACGGTCACAATTTATTCCAAGCTGCAAAGTTTACAGAGGACGAGCTTAAACAAAT
GAGTGAAGCTATTACAGTCCGGCGAGCGTCAGAGCCTGTCGATCTGATTCGAAGGGTGAAGGAAATTGAAGAGGAGTCTTATAGGGAAGCTGTGAGGGAGAAGCGATCGCATTCTACCATGGTGAAGCTCGCTCACGAGCTTCTGCAACAATTGAAAGAGTTTAAGGGCGACGGCGATTCAGACGAACAAGAAGCCCTGG
AAGAGTGGCGAAAGAAAAAACTTGAAGAAGCTAAGAAACAGGAAGCAATGAAAGGCAGTGTGAATTCCTCCAGGCAGGCCGAAGATACTGAGATGGTGGCCAAAGTATTGGAGACTGACTGGGGCCCTGTGTTGGAGGAAGCTGGCTTCTCATTACCTCCTGAAGTTTCAAGCAAGGGTAGTAATGGAAAGATGCTGGAG
GATGGACCTGAGATTGAAGATGGAATCATACCTGGTAGGCCACTTCCTTCTGAATGTCATGCAGAACCGCATACAGACTATGATGGAGCTGCAGTTAAATGGGGTCTGATGCACCATAAAGAAAGTGCTGCAGATTGTTGTCAGGCTTGCTTGGACCAAGCAAAAAATGCTAAACAAGGTGAAAAGAAGTGTAACATTTG
GGTTTATTGTCCATTTGAACCTGGTTGCTATTCTCCAGATATATATCAGCACAAGCATCGGGAATGCTGGCTGAAGCAGGCTGATCATCCAAAGCTCAACTTCAAGGGCAAATATAGTGAAGCATATAGACGGGAACATCCAACTGCACCAGTGGTGGTTCCCTGGGTTTCTGGTGTGACTGGTGGTTGAATGGCATTTG
GATGGATTCTATTGATAAACTGTTTGGCGAATACAGAGAGTTAGAAGCAAGCTGAGAGTTTTGGGACCAGGTTCTCCACTAAACTTGTACGGAGTTTGGATCTCATTGATAGAGTGCATATGCATGTTCTATACAGCAGCAGCTTTATTTCTTTCCTGTCTTCAATTTTGAAATCTATTGTTGCAAGGATGTCCCAAGGA
TCAATTATGGTTGAAATGTGCACATATTTTATTTTTTGCTTTATTTGTTCTTACAGAAATTTATTGCAATTGGTCTTTGAGTCACATTTTCTGAGAATTGCTTGTAGTATCAGAGAGAGGTTGAATGACATCAATTTCAAGATGGAAGCAATTTTTTTTGTATTCTCGAACTTCATTTCTAATACCCTCATTCAAAAATG
CAGATTCTTGTTTGAGAACATATCATCCAAT
>TRINITY_DN122064_c0_g2_i1 from sample A3 / Example unspliced isoform:ATTTATTCCAAGgtagctttgaacagtctaaactgataatcacaagaatctgttttcttcttggattggtaatttcatttttgctggccaatggtcacgattccaacactcctgctcttttataggaaatcatttgaattatgtgtacgtcttcaatttatcatacggacttataacttcgctggctcagCTGCAAAGTT
TACAGAGGACGAGCTTAAACAAATGAGTGAAGCTATTACAGTCCGGCGAGCGTCAGAGCCTGTCGATCTGATTCGAAGGGTGAAGGAAATTGAAGAGGAGTCTTATAGGGAAGCTGTGAGGGAGAAGCGATCGCATTCTACCATGGTGAAGCTCGCTCACGAGCTTCTGCAACAATTGAAAGAGTTTAAGGGCGACGGCG
ATTCAGACGAACAAGAAGCCCTGGAAGAGTGGCGAAAGAAAAAACTTGAAGAAGCTAAGAAACAGGAAGCAATGAAAGGCAGTGTGAATTCCTCCAGGCAGGCCGAAGATACTGAGATGGTGGCCAAAGTATTGGAGACTGACTGGGGCCCTGTGTTGGAGGAAGCTGGCTTCTCATTACCTCCTGAAGTTTCAAGCAAG
GGTAGTAATGGAAAGATGCTGGAGGATGGACCTGAGATTGAAGATGGAATCATACCTGGTAGGCCACTTCCTTCTGAATGTCATGCAGAACCGCATACAGACTATGATGGAGCTGCAGTTAAATGGGGTCTGATGCACCATAAAGAAAGTGCTGCAGATTGTTGTCAGGCTTGCTTGGACCAAGCAAAAAATGCTAAACA
AGGTGAAAAGAAGTGTAACATTTGGGTTTATTGTCCATTTGAACCTGGTTGCTATTCTCCAGATATATATCAGCACAAGCATCGGGAATGCTGGCTGAAGCAGGCTGATCATCCAAAGCTCAACTTCAAGGGCAAATATAGTGAAGCATATAGACGGGAACATCCAACTGCACCAGTGGTGGTTCCCTGGGTTTCTGGTG
TGACTGGTGGTTGAATGGCATTTGGATGGATTCTATTGATAAACTGTTTGGCGAATACAGAGAGTTAGAAGCAAGCTGAGAGTTTTGGGACCAGGTTCTCCACTAAACTTGTACGGAGTTTGGATCTCATTGATAGAGTGCATATGCATGTTCTATACAGCAGCAGCTTTATTTCTTTCCTGTCTTCAATTTTGAAATCT
ATTGTTGCAAGGATGTCCCAAGGATCAATTATGGTTGAAATGTGCACATATTTTATTTTTTGCTTTATTTGTTCTTACAGAAATTTATTGCAATTGGTCTTTGAGTCACATTTTCTGAGAATTGCTTGTAGTATCAGAGAGAGGTTGAATGACATCAATTTCAAGATGGAAGCAATTTTTTTTGTATTCTCGAACTTCAT
TTCTAATACCCTCATTCAAAAATGCAGATTCTTGTTTGAGAACATATCATCCAAT
Intron 7 GTAACGAATA ... TTGTCCAAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 48.68 | 39 | 37 | 0 |
| A2 | 47.62 | 22 | 20 | 1 |
| A3 | 50 | 32 | 32 | 0 |
| A4 | 60.98 | 16 | 25 | 3 |
| A5 | 51.85 | 13 | 14 | 3 |
| A6 | 49.74 | 97 | 96 | 0 |
| A7 | 51.1 | 133 | 139 | 3 |
| A8 | 50.64 | 115 | 118 | 0 |
| A9 | 49.55 | 112 | 110 | 0 |
| A10 | 48.46 | 117 | 110 | 4 |
>TRINITY_DN32757_c0_g1_i4 from sample A8 / Example spliced isoformCGTCCCCATTACGACCTAAAATCTTTGGCAATTGCCCCACCGGTTTGGATAATTCTCCCTTTTATATATATTTACGATCTTTCTCACTAATATTCTATCAATTTTTTCACGAAACCCTTCGGCCTCCTAATAATCGATGGAAACATCCGTACAACGTGAACGGGGATTTCTACTTTTGCTAAATTAATAATCGATGGAAC
GAGAGAAGGGGAGTTGGTATGCACCCGAGTTTGTGTCTGAACAACAAAAACCTTCATCGTTCTTTCCCTGTTTGTTTCTGTGCATCCACGATGTCTGAAGTTCGAGTCTTCAAATGTCCCATTGTCGGATGAGTTCTTCTTCATAGGGTTTCTTCTATCAGATCAGATCAGATCACCCTGGAGATGGCGCACGGAAATGG
CATGGAGTGGTCTGGCAAGATCAAATGCTCATACAAGACGGCCACAATGGTCCTATGTGCCGGCAATTTGGTAGTGGCTCTTTACGTTTTGCATTCTTTACTCACTCCTTTGTACATAATAACCTCCTCTTCTCTCGCCGGCCCCGCCAATGACGGTCACAATTTATTCCAAGCTGCAAAGTTTACAGAGGACGAGCTTA
AACAAATGAGTGAAGCTATTACAGTCCGGCGAGCGTCAGAGCCTGTCGATCTGATTCGAAGGGTGAAGGAAATTGAAGAGGAGTCTTATAGGGAAGCTGTGAGGGAGAAGCGATCGCATTCTACCATGGTGAAGCTCGCTCACGAGCTTCTGCAACAATTGAAAGAGTTTAAGGGCGACGGCGATTCAGACGAACAAGAA
GCCCTGGAAGAGTGGCGAAAGAAAAAACTTGAAGAAGCTAAGAAACAGGAAGCAATGAAAGGCAGTGTGAATTCCTCCAGGCAGGCCGAAGATACTGCTCCCCAAAATTTTGGCATGTGTTTAAACTTCATACATTATGTATTGGGGGTCCCATGAACAGAGATGGTGGCCAAAGTATTGGAGACTGACTGGGGCCCTGT
GTTGGAGGAAGCTGGCTTCTCATTACCTCCTGAAGTTTCAAGCAAGGGTAGTAATGGAAAGATGCTGGAGGATGGACCTGAGATTGGCAGGAAGAGTTCAGAGAAATCTAAGTTCAAGATGGTGCTAGTATAGCCTCATGCATTGTTTGATATCTTTTCTGCAGAAGATGGAATCATACCTGGTAG
>TRINITY_DN32757_c0_g1_i3 from sample A8 / Example unspliced isoform:GTCCATTAGTTGTGGTGGTACAGTATTTTCTTGTGACATCAGGTTCTTTTCCTCTCTGTTGCTTTTGGTCCATAGCTCCCCAAAATTTTGGCATGTGTTTAAACTTCATACATTATGTATTGGGGGTCCCATGAACAGAGATGGTGGCCAAAGTATTGGAGACTGACTGGGGCCCTGTGTTGGAGGAAGCTGGCTTCTCA
TTACCTCCTGAAGTTTCAAGCAAGGGTAGTAATGGAAAGATGCTGGAGGATGGACCTGAGATTGgtaacgaatagattgcccattttagtttggtgttttcacgtttgctttcttgagattttgactactaggttaatgccatgaaattgatttggccacttcgctgcattacatctagaatacagtgtgtttacagaat
atttatattgcagtcttatctatttctaagtatatgagtcatgacttgagaattgtggcttccttacaattttctaggttccatttttcagcatctttaaggttattaccaatttgctaaatttaacaatttgattacctatgtgctagaaaatggactttagtattttgcagtgaagaactgttaaaatgcaaacttaa
gcattttttgcaaaatcctctcttttcttttctacttttccccaagtgtgttattttgaataatttttttcttttgttacttttatttgtccaaagGCAGGAAGAGTTCAGAGAAATCTAAGTTCAAGATGGTGCTAGTATAGCCTCATGCATTGTTTGATATCTTTTCTGCAGAAGATGGAATCATACCTGGTAG
Intron 8 GTATGCATTT ... CCATGAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 24.55 | 83 | 15 | 39 |
| A2 | 20.55 | 87 | 19 | 26 |
| A3 | 21.66 | 123 | 20 | 48 |
| A4 | 21.85 | 59 | 13 | 20 |
| A5 | 19.05 | 51 | 13 | 11 |
| A6 | 22.24 | 257 | 40 | 107 |
| A7 | 21.53 | 390 | 80 | 134 |
| A8 | 21.26 | 274 | 40 | 108 |
| A9 | 20.84 | 357 | 62 | 126 |
| A10 | 18.73 | 345 | 54 | 105 |
>TRINITY_DN104519_c0_g1_i4 from sample A2 / Example spliced isoformGTTTTCTTCTTGGATTGGTAATTTCATTTTTGCTGGCCAATGGTCACGATTCCAACACTCCTGCTCTTTTATAGGAAATCATTTGAATTATGTGTACGTCTTCAATTTATCATACGGACTTATAACTTCGCTGGCTCAGCTGCAAAGTTTACAGAGGACGAGCTTAAACAAATGAGTGAAGCTATTACAGTCCGGCGAGC
GTCAGAGCCTGTCGATCTGATTCGAAGGGTGAAGGAAATTGAAGAGGAGTCTTATAGGGAAGCTGTGAGGGAGAAGCGATCGCATTCTACCATGGTGAAGCTCGCTCACGAGCTTCTGCAACAATTGAAAGAGTTTAAGGGCGACGGCGATTCAGACGAACAAGAAGCCCTGGAAGAGTGGCGAAAGAAAAAACTTGAAG
AAGCTAAGAAACAGGAAGCAATGAAAGGCAGTGTGAATTCCTCCAGGCAGGCCGAAGATACTGAGATGGTGGCCAAAGTATTGGAGACTGACTGGGGCCCTGTGTTGGAGGAAGCTGGCTTCTCATTACCTCCTGAAGTTTCAAGCAAGGGTAGTAATGGAAAGATGCTGGAGGATGGACCTGAGATTGAAGATGGAATC
ATACCTGGTAGGCCACTTCCTTCTGAATGTCATGCAGAACCGCATACAGACTATGATGGAGCTGCAGTTAAATGGGGTCTGATGCACCATAAAGAAAGTGCTGCAGATTGTTGTCAGGCTTGCTTGGACCAAGCAAAAAATGCTAAACAAGGTGAAAAGAAGTGTAACATTTGGGTTTATTGTCCATTTGAACCTGGTTG
CTATTCTCCAGATATATATCAGCACAAGCATCGGGAATGCTGGCTGAAGCAGGCTGATCATCCAAAGCTCAACTTCAAGGGCAAATATAGTGAAGCATATAGACGGGAACATCCAACTGCACCAGTGGTGGTTCCCTGGGTTTCTGGTGTGACTGGTGGTTGAATGGCATTTGGATGGATTCTATTGATAAACTGTTTGG
CGAATACAGAGAGTTAGAAGCAAGCTGAGAGTTTTGGGACCAGGTTCTCCACTAAACTTGTACGGAGTTTGGATCTCATTGATAGAGTGCATATGCATGTTCTATACAGCAGCAGCTTTATTTCTTTCCTGTCTTCAATTTTGAAATCTATTGTTGCAAGGATGTCCCAAGGATCAATTATGGTTGAAATGTGCACATAT
TTTATTTTTTGCTTTATTTGTTCTTACAGAAATTTATTGCAATTGGTCTTTGAGTCACATTTTCTGAGAATTGCTTGTAGTATCAGAGAGAGGTTGAATGACATCAATTTCAAGATGGAAGCAATTTTTTTTGTATTCTCGAACTTCATTTCTAATACCCTCATTCAAAAATGC
>TRINITY_DN104519_c0_g1_i3 from sample A2 / Example unspliced isoform:GTAGTGGCTCTTTACGTTTTGCATTCTTTACTCACTCCTTTGTACATAATAACCTCCTCTTCTCTCGCCGGCCCCGCCAATGACGGTCACAATTTATTCCAAGCTGCAAAGTTTACAGAGGACGAGCTTAAACAAATGAGTGAAGCTATTACAGTCCGGCGAGCGTCAGAGCCTGTCGATCTGATTCGAAGGGTGAAGGA
AATTGAAGAGGAGTCTTATAGGGAAGCTGTGAGGGAGAAGCGATCGCATTCTACCATGGTGAAGCTCGCTCACGAGCTTCTGCAACAATTGAAAGAGTTTAAGGGCGACGGCGATTCAGACGAACAAGAAGCCCTGGAAGAGTGGCGAAAGAAAAAACTTGAAGAAGCTAAGAAACAGGAAGCAATGAAAGGCAGTGTGA
ATTCCTCCAGGCAGGCCGAAGATACTGgtatgcattttttctatgcagcttatgtgtggctttaactgaagacttgtccattagttgtggtggtacagtattttcttgtgacatcaggttcttttcctctctgttgcttttggtccatagctccccaaaattttggcatgtgtttaaacttcatacattatgtattgggg
gtcccatgaacagAGATGGTGGCCAAAGTATTGGAGACTGACTGGGGCCCTGTGTTGGAGGAAGCTGGCTTCTCATTACCTCCTGAAGTTTCAAGCAAGGGTAGTAATGGAAAGATGCTGGAGGATGGACCTGAGATTGAAGATGGAATCATACCTGGTAGGCCACTTCCTTCTGAATGTCATGCAGAACCGCATACAGA
CTATGATGGAGCTGCAGTTAAATGGGGTCTGATGCACCATAAAGAAAGTGCTGCAGATTGTTGTCAGGCTTGCTTGGACCAAGCAAAAAATGCTAAACAAGGTGAAAAGAAGTGTAACATTTGGGTTTATTGTCCATTTGAACCTGGTTGCTATTCTCCAGATATATATCAGCACAAGCATCGGGAATGCTGGCTGAAGC
AGGCTGATCATCCAAAGCTCAACTTCAAGGGCAAATATAGTGAAGCATATAGACGGGAACATCCAACTGCACCAGTGGTGGTTCCCTGGGTTTCTGGTGTGACTGGTGGTTGAATGGCATTTGGATGGATTCTATTGATAAACTGTTTGGCGAATACAGAGAGTTAGAAGCAAGCTGAGAGTTTTGGGACCAGGTTCTCC
ACTAAACTTGTACGGAGTTTGGATCTCATTGATAGAGTGCATATGCATGTTCTATACAGCAGCAGCTTTATTTCTTTCCTGTCTTCAATTTTGAAATCTATTGTTGCAAGGATGTCCCAAGGATCAATTATGGTTGAAATGTGCACATATTTTATTTTTTGCTTTATTTGTTCTTACAGAAATTTATTGCAATTGGTCTT
TGAGTCACATTTTCTGAGAATTGCTTGTAGTATCAGAGAGAGGTTGAATGACATCAATTTCAAGATGGAAGCAATTTTTTTTGTATTCTCGAACTTCATTTCTAATACCCTCATTCAAAAATGC
Intron 9 GTAGCTTTGA ... AAGTTTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 30.68 | 87 | 25 | 52 |
| A2 | 25.49 | 57 | 16 | 23 |
| A3 | 27.66 | 85 | 33 | 32 |
| A4 | 25.61 | 61 | 17 | 25 |
| A5 | 29.41 | 30 | 12 | 13 |
| A6 | 27.27 | 92 | 31 | 38 |
| A7 | 26.48 | 161 | 51 | 65 |
| A8 | 24.36 | 104 | 32 | 35 |
| A9 | 27.78 | 156 | 57 | 63 |
| A10 | 25 | 162 | 50 | 58 |
>TRINITY_DN35131_c0_g1_i6 from sample A9 / Example spliced isoformAAAATATTTGCCAAATCATACTGTCCCCATTACGACCTAAAATCTTTGGCAATTGCCCCACCGGTTTGGATAATTCTCCCTTTTATATATATTTACGATCTTTCTCACTAATATTCTATCAATTTTTTCACGAAACCCTTCGGCCTCCTAATAATCGATGGAAACATCCGTACAACGTGAACGGGGATTTCTACTTTTGC
TAAATTAATAATCGATGGAACGAGAGAAGGGGAGTTGGTATGCACCCGAGTTTGTGTCTGAACAACAAAAACCTTCATCGTTCTTTCCCTGTTTGTTTCTGTGCATCCACGATGTCTGAAGTTCGAGTCTTCAAATGTCCCATTGTCGGATGAGTTCTTCTTCATAGGGTTTCTTCTATCAGATCAGATCAGATCACCCT
GGAGATGGCGCACGGAAATGGCATGGAGTGGTCTGGCAAGATCAAATGCTCATACAAGACGGCCACAATGGTCCTATGTGCCGGCAATTTGGTAGTGGCTCTTTACGTTTTGCATTCTTTACTCACTCCTTTGTACATAATAACCTCCTCTTCTCTCGCCGGCCCCGCCAATGACGGTCACAATTTATTCCAAGAGGACG
AGCTTAAACAAATGAGTGAAGCTATTACAGTCCGGCGAGCGTCAGAGCCTGTCGATCTGATTCGAAGGGTGAAGGAAATTGAAGAGGAGTCTTATAGGGAAGCTGTGAGGGAGAAGCGATCGCATTCTACCATGGTGAAGCTCGCTCACGAGCTTCTGCAACAATTGAAAGAGTTTAAGGGCGACGGCGATTCAGACGAA
CAAGAAGCCCTGGAAGAGTGGCGAAAGAAAAAACTTGAAGAAGCTAAGAAACAGGAAGCAATGAAAGGCAGTGTGAATTCCTCCAGGCAGGCCGAAGATACTGAGATGGTGGCCAAAGTATTGGAGACTGACTGGGGCCCTGTGTTGGAGGAAGCTGGCTTCTCATTACCTCCTGAAGTTTCAAGCAAGGGTAGTAATGG
AAAGATGCTGGAGGATGGACCTGAGATTGAAGATGGAATCATACCTGGTAGGCCACTTCCTTCTGAATGTCATGCAGAACCGCATACAGACTATGATGGAGCTGCAGTTAAATGGGGTCTGATGCACCATAAAGAAAGTGCTGCAGATTGTTGTCAGGCTTGCTTGGACCAAGCAAAAAATGCTAAACAAGGTGAAAAGA
AGTGTAACATTTGGGTTTATTGTCCATTTGAACCTGGTTGCTATTCTCCAGATATATATCAGCACAAGCATCGGGAATGCTGGCTGAAGCAGGCTGATCATCCAAAGCTCAACTTCAAGGGCAAATATAGTGAAGCATATAGACGGGAACATCCAACTGCACCAGTGGTGGTTCCCTGGGTTTCTGGTGTGACTGGTGGT
TGAATGGCATTTGGATGGATTCTATTGATAAACTGTTTGGCGAATACAGAGAGTTAGAAGCAAGCTGAGAGTTTTGGGACCAGGTTCTCCACTAAACTTGTACGGAGTTTGGATCTCATTGATAGAGTGCATATGCATGTTCTATACAGCAGCAGCTTTATTTCTTTCCTGTCTTCAATTTTGAAATCTATTGTTGCAAG
GATGTCCCAAGGATCAATTATGGTTGAAATGTGCACATATTTTATTTTTTGCTTTATTTGTTCTTACAGAAATTTATTGCAATTGGTCTTTGAGTCACATTTTCTGAGAATTGCTTGTAGTATCAGAGAGAGGTTGAATGACATCAATTTCAAGATGGAAGCAATTTTTTTTGTATTCTCGAACTTCATTTCTAATACCC
TCATTCAAAAATGCAGATTCTTGTTTGAGAACATATCATCC
>TRINITY_DN35131_c0_g1_i5 from sample A9 / Example unspliced isoform:AAAATATTTGCCAAATCATACTGTCCCCATTACGACCTAAAATCTTTGGCAATTGCCCCACCGGTTTGGATAATTCTCCCTTTTATATATATTTACGATCTTTCTCACTAATATTCTATCAATTTTTTCACGAAACCCTTCGGCCTCCTAATAATCGATGGAAACATCCGTACAACGTGAACGGGGATTTCTACTTTTGC
TAAATTAATAATCGATGGAACGAGAGAAGGGGAGTTGGTATGCACCCGAGTTTGTGTCTGAACAACAAAAACCTTCATCGTTCTTTCCCTGTTTGTTTCTGTGCATCCACGATGTCTGAAGTTCGAGTCTTCAAATGTCCCATTGTCGGATGAGTTCTTCTTCATAGGGTTTCTTCTATCAGATCAGATCAGATCACCCT
GGAGATGGCGCACGGAAATGGCATGGAGTGGTCTGGCAAGATCAAATGCTCATACAAGACGGCCACAATGGTCCTATGTGCCGGCAATTTGGTAGTGGCTCTTTACGTTTTGCATTCTTTACTCACTCCTTTGTACATAATAACCTCCTCTTCTCTCGCCGGCCCCGCCAATGACGGTCACAATTTATTCCAAGgtagct
ttgaacagtctaaactgataatcacaagaatctgttttcttcttggattggtaatttcatttttgctggccaatggtcacgattccaacactcctgctcttttataggaaatcatttgaattatgtgtacgtcttcaatttatcatacggacttataacttcgctggctcagctgcaaagtttacagAGGACGAGCTTAA
ACAAATGAGTGAAGCTATTACAGTCCGGCGAGCGTCAGAGCCTGTCGATCTGATTCGAAGGGTGAAGGAAATTGAAGAGGAGTCTTATAGGGAAGCTGTGAGGGAGAAGCGATCGCATTCTACCATGGTGAAGCTCGCTCACGAGCTTCTGCAACAATTGAAAGAGTTTAAGGGCGACGGCGATTCAGACGAACAAGAAG
CCCTGGAAGAGTGGCGAAAGAAAAAACTTGAAGAAGCTAAGAAACAGGAAGCAATGAAAGGCAGTGTGAATTCCTCCAGGCAGGCCGAAGATACTGAGATGGTGGCCAAAGTATTGGAGACTGACTGGGGCCCTGTGTTGGAGGAAGCTGGCTTCTCATTACCTCCTGAAGTTTCAAGCAAGGGTAGTAATGGAAAGATG
CTGGAGGATGGACCTGAGATTGAAGATGGAATCATACCTGGTAGGCCACTTCCTTCTGAATGTCATGCAGAACCGCATACAGACTATGATGGAGCTGCAGTTAAATGGGGTCTGATGCACCATAAAGAAAGTGCTGCAGATTGTTGTCAGGCTTGCTTGGACCAAGCAAAAAATGCTAAACAAGGTGAAAAGAAGTGTAA
CATTTGGGTTTATTGTCCATTTGAACCTGGTTGCTATTCTCCAGATATATATCAGCACAAGCATCGGGAATGCTGGCTGAAGCAGGCTGATCATCCAAAGCTCAACTTCAAGGGCAAATATAGTGAAGCATATAGACGGGAACATCCAACTGCACCAGTGGTGGTTCCCTGGGTTTCTGGTGTGACTGGTGGTTGAATGG
CATTTGGATGGATTCTATTGATAAACTGTTTGGCGAATACAGAGAGTTAGAAGCAAGCTGAGAGTTTTGGGACCAGGTTCTCCACTAAACTTGTACGGAGTTTGGATCTCATTGATAGAGTGCATATGCATGTTCTATACAGCAGCAGCTTTATTTCTTTCCTGTCTTCAATTTTGAAATCTATTGTTGCAAGGATGTCC
CAAGGATCAATTATGGTTGAAATGTGCACATATTTTATTTTTTGCTTTATTTGTTCTTACAGAAATTTATTGCAATTGGTCTTTGAGTCACATTTTCTGAGAATTGCTTGTAGTATCAGAGAGAGGTTGAATGACATCAATTTCAAGATGGAAGCAATTTTTTTTGTATTCTCGAACTTCATTTCTAATACCCTCATTCA
AAAATGCAGATTCTTGTTTGAGAACATATCATCC