sp|Q6XAT2|ERL2_ARATH ----> LRR receptor-like serine/threonine-protein kinase ERL2

Intron 1 GTTTGCCTAT ... TTTTTTGTAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	79.41	7	27	0
A2	40	6	4	0
A3	60	14	21	0
A4	69.23	4	9	0
A5	81.82	2	9	0
A6	35.71	9	5	0
A7	33.33	14	7	0
A8	7.14	13	1	0
A9	23.08	10	3	0
A10	61.11	7	11	0

>TRINITY_DN135015_c1_g2_i2 from sample A1 / Example spliced isoform

TTCCATTGAAGGCACTTACTTTGATGCCACCGATGAAGGCTAAACTATGAGAGCTGAGGACTTGATATTCTCATCAGTTTTTCTTTTATAGGTTTCAACTTTCTATGTTTAATTTCTTAATTAGATAAAATAATTTTGCATAAATGGGTTTCCATACATGACATCTTAAATGGATATTTTCAGTTATATCTTTCAGTAGT
TTTGTGTCTGGCTTCTCGACGGTAATATTCTATTTTGGCATGAATAGAATTGAGTGTTATAAAATAAGGGGGGGAAGGGTACTTGGCATTTATTGCACCGTGATGCTGGCTCGACTTGATAAAGGTTTGCCTATAGCTCTGTTAAGGATTTTATGCTGGTTCTTTCTGGTTTTGTTTTTATATGCAGTTTGTATATCAAA
CTTTATTCATTATAGGGACTTGTTTCAAAAGTACTTTCATCTTGTCAATCTATATTTCTTAGATATATGACTTGTACAACATATTTACAGTGAATATGTTTCTTAGTATATATCCTTCGTTTCTTATGGGTTTTTTTGTAGTGTGGATTTTCTCTTTCAGTCTTATAAAATAAGAGGGGAAGGGTGGTTGGCATTTATTG
CACCGTGATGCTGGCTCGACTTGATAAAGTGTGGATTTTCTCTGGACTTGAGTGATGATCATCTTACTCGAACAATTCCTCCCATCCTAGGCAATCTGAGTTACACTGGAAAGTTATATTTGCA

>TRINITY_DN135015_c1_g2_i9 from sample A1 / Example unspliced isoform:

TTCCATTGAAGGCACTTACTTTGATGCCACCGATGAAGGCTAAACTATGAGAGCTGAGGACTTGATATTCTCATCAGTTTTTCTTTTATAGGTTTCAACTTTCTATGTTTAATTTCTTAATTAGATAAAATAATTTTGCATAAATGGGTTTCCATACATGACATCTTAAATGGATATTTTCAGTTATATCTTTCAGTAGT
TTTGTGTCTGGCTTCTCGACGGTAATATTCTATTTTGGCATGAATAGAATTGAGGTATCATCATTCAATCTTCTTAGTTTGGCATTAATAGATTTGAGGGATCATCTATGTATTGTACTTTATTTGTTGTAAGATAACTTTTTGTTATAGAGATCTTGTGGATTTTCCCTTTCAGTGTTATAAAATAAGGGGGGGAAGGG
TACTTGGCATTTATTGCACCGTGATGCTGGCTCGACTTGATAAAGGTTTGCCTATAGCTCTGTTAAGGATTTTATGCTGGTTCTTTCTGGTTTTGTTTTTATATGCAGTTTGTATATCAAACTTTATTCATTATAGGGACTTGTTTCAAAAGTACTTTCATCTTGTCAATCTATATTTCTTAGATATATGACTTGTACAA
CATATTTACAGTGAATATGTTTCTTAGTATATATCCTTCGTTTCTTATGGGTTTTTTTGTAGTGTGGATTTTCTCTTTCAGTCTTATAAAATAAGAGGGGAAGGGTGGTTGGCATTTATTGCACCGTGATGCTGGCTCGACTTGATAAAGgtttgcctatagcattctctgcctatagctctgttaaggattctatgctg
gttcttacaatctggttttgtttttatatgtagtttgtatatcaaactttattcattatatggacttgtttcaagagtactttcatcttgtcaatctatatttctttgatatatgacttgtacaacatatttacagtgaatatgtttcttagtatattactatatatcctttcgtttcttatggactatatatccttgtt
tcttatgttttttttagtgaatatgtttcttagtatatatccttcgtttcttatgggttttttttgtagTGTGGATTTTCT

Intron 2 GTTTGCCTAT ... TTTTTTGTAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	35.9	25	14	0
A2	27.27	8	3	0
A3	33.33	8	4	0
A4	36.84	12	7	0
A5	44.44	5	4	0
A6	0	22	0	0
A7	21.74	18	5	0
A8	4.76	20	1	0
A9	5	19	1	0
A10	36.36	14	8	0

>TRINITY_DN135015_c1_g2_i6 from sample A1 / Example spliced isoform

TTCCATTGAAGGCACTTACTTTGATGCCACCGATGAAGGCTAAACTATGAGAGCTGAGGACTTGATATTCTCATCACTTTTTCTTTTATAGGTTTCTATGTTTAATTTCTTAGTTAGATAATAAATAGTTTTGCATAAATGAGTTTCCATGCATGACATCTTAAATGGATGTTTTCAGTTATATCTTTCAATAGTTTTTT
GTCTGACTTATCAACGGCAATATTCTATTTTGGCATGAATAGAATTGAGGTATCATCATTCAATCTTCTTAGTTTGGCATTAATAGATTTGAGGGATCATCTATGTATTGTACTTTATTTGTTGTAAGATAACTTTTTGTTATAGAGATCTTGTGGATTTTCCCTTTCAGTGTTATAAAATAAGGGGGGGAAGGGTACTT
GGCATTTATTGCACCGTGATGCTGGCTCGACTTGATAAAGTGTGGATTTTCTCTCCCTCTTATAAAATAAGAGGGGAAGGGTGCTTGGCATTTATTGCACCTTGATGCTGGCTCGACTTGATAAAGTGTGGATTTTCTCT

>TRINITY_DN135015_c1_g2_i4 from sample A1 / Example unspliced isoform:

TTCCATTGAAGGCACTTACTTTGATGCCACCGATGAAGGCTAAACTATGAGAGCTGAGGACTTGATATTCTCATCACTTTTTCTTTTATAGGTTTCTATGTTTAATTTCTTAGTTAGATAATAAATAGTTTTGCATAAATGAGTTTCCATGCATGACATCTTAAATGGATGTTTTCAGTTATATCTTTCAATAGTTTTTT
GTCTGACTTATCAACGGCAATATTCTATTTTGGCATGAATAGAATTGAGGTATCATCATTCAATCTTCTTAGTTTGGCATTAATAGATTTGAGGGATCATCTATGTATTGTACTTTATTTGTTGTAAGATAACTTTTTGTTATAGAGATCTTGTGGATTTTCCCTTTCAGTGTTATAAAATAAGGGGGGGAAGGGTACTT
GGCATTTATTGCACCGTGATGCTGGCTCGACTTGATAAAGGTTTGCCTATAGCTCTGTTAAGGATTTTATGCTGGTTCTTTCTGGTTTTGTTTTTATATGCAGTTTGTATATCAAACTTTATTCATTATAGGGACTTGTTTCAAAAGTACTTTCATCTTGTCAATCTATATTTCTTAGATATATGACTTGTACAACATAT
TTACAGTGAATATGTTTCTTAGTATATATCCTTCGTTTCTTATGGGTTTTTTTGTAGTGTGGATTTTCTCTTTCAGTCTTATAAAATAAGAGGGGAAGGGTGCTGGCTCGACTTGATAAAGgtttgcctatagcattctctgcctatagctctgttaaggattctatgctggttcttacaatctggttttgtttttatat
gtagtttgtatatcaaactttattcattatatggacttgtttcaagagtactttcatcttgtcaacagtgaatatgtttcttagtatatactatatatccttgtttcttatgttttttttagtgaatatgtttcttagtatatatccttcgtttcttatgggttttttttgtagTGTGGATTTTCT

Intron 3 GTTTGCCTAT ... TTTTTTGTAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	56.25	7	9	1
A2	0	6	0	0
A3	6.67	14	1	0
A4	55.56	4	5	1
A5	50	2	2	0
A6	0	9	0	0
A7	6.67	14	1	1
A8	0	13	0	0
A9	9.09	10	1	0
A10	30	7	3	2

>TRINITY_DN135015_c1_g2_i2 from sample A1 / Example spliced isoform

TTCCATTGAAGGCACTTACTTTGATGCCACCGATGAAGGCTAAACTATGAGAGCTGAGGACTTGATATTCTCATCAGTTTTTCTTTTATAGGTTTCAACTTTCTATGTTTAATTTCTTAATTAGATAAAATAATTTTGCATAAATGGGTTTCCATACATGACATCTTAAATGGATATTTTCAGTTATATCTTTCAGTAGT
TTTGTGTCTGGCTTCTCGACGGTAATATTCTATTTTGGCATGAATAGAATTGAGTGTTATAAAATAAGGGGGGGAAGGGTACTTGGCATTTATTGCACCGTGATGCTGGCTCGACTTGATAAAGGTTTGCCTATAGCTCTGTTAAGGATTTTATGCTGGTTCTTTCTGGTTTTGTTTTTATATGCAGTTTGTATATCAAA
CTTTATTCATTATAGGGACTTGTTTCAAAAGTACTTTCATCTTGTCAATCTATATTTCTTAGATATATGACTTGTACAACATATTTACAGTGAATATGTTTCTTAGTATATATCCTTCGTTTCTTATGGGTTTTTTTGTAGTGTGGATTTTCTCTTTCAGTCTTATAAAATAAGAGGGGAAGGGTGGTTGGCATTTATTG
CACCGTGATGCTGGCTCGACTTGATAAAGTGTGGATTTTCTCTGGACTTGAGTGATGATCATCTTACTCGAACAATTCCTCCCATCCTAGGCAATCTGAGTTACACTGGAAAGTTATATTTGCA

>TRINITY_DN135015_c1_g2_i5 from sample A1 / Example unspliced isoform:

AATATTCTATTTTGGCATGAATAGAATTGAGTGTTATAAAATAAGGGGGGGAAGGGTACTTGGCATTTATTGCACCGTGATGCTGGCTCGACTTGATAAAGGTTTGCCTATAGCTCTGTTAAGGATTTTATGCTGGTTCTTTCTGGTTTTGTTTTTATATGCAGTTTGTATATCAAACTTTATTCATTATAGGGACTTGT
TTCAAAAGTACTTTCATCTTGTCAATCTATATTTCTTAGATATATGACTTGTACAACATATTTACAGTGAATATGTTTCTTAGTATATATCCTTCGTTTCTTATGGGTTTTTTTGTAGCTGGCTCGACTTGATAAAGgtttgcctatagcattctctgcctatagctctgttaaggattctatgctggttcttacaatct
ggttttgtttttatatgtagtttgtatatcaaactttattcattatatggacttgtttcaagagtactttcatcttgtcaactatatatcttagatatatgacttgtagtatgtacaacatatttgcagtgaatatgtttcttagtatatactatatatccttgtttcttatgttttttttagtgaatatgtttcttagt
atatatccttcgtttcttatgggttttttttgtagTGTGGATTTTCT

Intron 4 GTATCATCAT ... TCCCTTTCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	74.87	12.3	34.5	37
A2	81.13	4	21	13
A3	89.24	3	27	15.5
A4	82.32	2.8	9.3	16
A5	88.25	1.5	9	10
A6	47.86	9.5	5.5	2
A7	74.36	5	10	9
A8	55.9	5.8	5	8
A9	35.65	6.5	2.8	2
A10	19.71	10.3	3.5	1

>TRINITY_DN135015_c1_g2_i2 from sample A1 / Example spliced isoform

TTCCATTGAAGGCACTTACTTTGATGCCACCGATGAAGGCTAAACTATGAGAGCTGAGGACTTGATATTCTCATCAGTTTTTCTTTTATAGGTTTCAACTTTCTATGTTTAATTTCTTAATTAGATAAAATAATTTTGCATAAATGGGTTTCCATACATGACATCTTAAATGGATATTTTCAGTTATATCTTTCAGTAGT
TTTGTGTCTGGCTTCTCGACGGTAATATTCTATTTTGGCATGAATAGAATTGAGTGTTATAAAATAAGGGGGGGAAGGGTACTTGGCATTTATTGCACCGTGATGCTGGCTCGACTTGATAAAGGTTTGCCTATAGCTCTGTTAAGGATTTTATGCTGGTTCTTTCTGGTTTTGTTTTTATATGCAGTTTGTATATCAAA
CTTTATTCATTATAGGGACTTGTTTCAAAAGTACTTTCATCTTGTCAATCTATATTTCTTAGATATATGACTTGTACAACATATTTACAGTGAATATGTTTCTTAGTATATATCCTTCGTTTCTTATGGGTTTTTTTGTAGTGTGGATTTTCTCTTTCAGTCTTATAAAATAAGAGGGGAAGGGTGGTTGGCATTTATTG
CACCGTGATGCTGGCTCGACTTGATAAAGTGTGGATTTTCTCTGGACTTGAGTGATGATCATCTTACTCGAACAATTCCTCCCATCCTAGGCAATCTGAGTTACACTGGAAAGTTATATTTGCA

>TRINITY_DN135015_c1_g2_i9 from sample A1 / Example unspliced isoform:

TTCCATTGAAGGCACTTACTTTGATGCCACCGATGAAGGCTAAACTATGAGAGCTGAGGACTTGATATTCTCATCAGTTTTTCTTTTATAGGTTTCAACTTTCTATGTTTAATTTCTTAATTAGATAAAATAATTTTGCATAAATGGGTTTCCATACATGACATCTTAAATGGATATTTTCAGTTATATCTTTCAGTAGT
TTTGTGTCTGGCTTCTCGACGGTAATATTCTATTTTGGCATGAATAGAATTGAGgtatcatcattcaatcttcttagtttggcattaatagatttgagggatcatctatgtattgtactttatttgttgtaagataactttttgttatagagatcttgtggattttccctttcagTGTTATAAAATAAGGGGGGGAAGGG
TACTTGGCATTTATTGCACCGTGATGCTGGCTCGACTTGATAAAGGTTTGCCTATAGCTCTGTTAAGGATTTTATGCTGGTTCTTTCTGGTTTTGTTTTTATATGCAGTTTGTATATCAAACTTTATTCATTATAGGGACTTGTTTCAAAAGTACTTTCATCTTGTCAATCTATATTTCTTAGATATATGACTTGTACAA
CATATTTACAGTGAATATGTTTCTTAGTATATATCCTTCGTTTCTTATGGGTTTTTTTGTAGTGTGGATTTTCTCTTTCAGTCTTATAAAATAAGAGGGGAAGGGTGGTTGGCATTTATTGCACCGTGATGCTGGCTCGACTTGATAAAGGTTTGCCTATAGCATTCTCTGCCTATAGCTCTGTTAAGGATTCTATGCTG
GTTCTTACAATCTGGTTTTGTTTTTATATGTAGTTTGTATATCAAACTTTATTCATTATATGGACTTGTTTCAAGAGTACTTTCATCTTGTCAATCTATATTTCTTTGATATATGACTTGTACAACATATTTACAGTGAATATGTTTCTTAGTATATTACTATATATCCTTTCGTTTCTTATGGACTATATATCCTTGTT
TCTTATGTTTTTTTTAGTGAATATGTTTCTTAGTATATATCCTTCGTTTCTTATGGGTTTTTTTTGTAGTGTGGATTTTCT