sp|P93290|M240_ARATH ----> Uncharacterized mitochondrial protein AtMg00240
Intron 1 GTTTGCAGGG ... GGATCTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 30.33 | 98.2 | 37.1 | 44.8 |
| A2 | 30.87 | 62.6 | 40 | 28.1 |
| A3 | 28.13 | 78.2 | 29.5 | 31.7 |
| A4 | 27.24 | 56.6 | 34.1 | 21.4 |
| A5 | 34 | 71.3 | 21.2 | 37 |
| A6 | 22.37 | 58 | 18.9 | 17.4 |
| A7 | 22.57 | 78.6 | 19.6 | 24.2 |
| A8 | 25.34 | 49.8 | 10.6 | 18 |
| A9 | 15.3 | 95.2 | 28.6 | 17.6 |
| A10 | 20.62 | 119 | 45.5 | 32.2 |
>TRINITY_DN118707_c7_g1_i6 from sample A1 / Example spliced isoformTTTTATAGGGACAGAAAGGGCGCACGGTGGGAAATCTCATGATTGCCAGAGTGGACTTTCCCAGAATTCCCAAACGCCACGGCAGGGCACGGCACGGCACGTCTCTAATTTTGTTTGAATAGCGAGAAGTTGGTTGTTGGGATTCAACCCATCATTAATCATTCTTCTTCAGCTCTCGTCATTTGCATTTCCCACCCGTA
AACTCAACGGATTCGCCCACGATCTTCATCTCCCATCTGAAATCATCGTACCGCCCTCAACTAATTACTGTGGATCAAGAGATTTATATTTCCTTGGGAGGGTCTCGATCCTCTGACGTCTTAAAAGGCCAGTCAGATCTATAATTTAAGAAAGCTGAGGCCGAATGGGAAATGTTTACTGATTTTTCTTTTCTTGAAAT
TCTTAGTCAGTCCGCAGTACCGCTGATAAAGCTGCTGCTCCTTCAGTCCTGACAGCAAAGCATCTTCAATCGACTCGTTCGATTATTCCCAATTTCCCAGTTGTAAAGCAGTTCAAAATTCAAAACAATAATTAGCTGAAGCGGACTCGAAACCGCAACCATTTGTGTACTTGTCTGACTGGGAATTCATACTCGTGAAT
TCGTTGCAGTAATACATTCAGCTTTATGTACTATTTATTTCCCTTTTCTCTAGAATGTTTAAATCTCAGAGACATTTAGGAGTGTAAGGGGTGTTCTCTACACAAACAAGATTGGGTTCTGTAAAGAAAAAAGGAAAGTGGGTTCGCAGCTTGTAGCTCGATAAGGAGTATCTGGAGCAATGATGTTGCTAACGGCTGCC
GCCAAGCGCAGCGGAGGTTTGAGAATGAATGAAACAATGAGGGTAATTATGACAGCAGTTTGTGGAATTGTCATAGGGTTCTTTGTCGGTGCTTCTTTTCCGCGGGATTCTCTTCCCAAGTTTACTTTTCCGCCCAGGCTGATGGCTAACCCCATTAATCTTCAATCTTCCGAGGACAACAATTCAGGAATAGCTGAACA
GGTTCTGATGAACTCTGGTCATACATCCCGGCAAATATCAAATGCCACTGGCTCTCCAACTGCTTCTAGAACTGGAAACAACTCTCAGATATATATACCAACAAACCCTCGTGGTGCAGAGACATTGGCTCCAGGCATTGTTGTGCCCGAGACTGACTTATACCTACGTAGATTGTGGGGTAAGCCCAGTGAGGACTTAC
CATTCAAGCAAAAGTATCTAGTGGTTTTCACTGTTGGGTTTGCACAGAAGGATATTGTCAATACTGCTATTTCCAAGTTTTCAGGAAATTTTACAATTCTTCTTTTCCATTATGATGGGAGGACAAGTGAATGGGATCAATTTGAGTGGTCAAAACAAGCAATTCATATCAGTGCAATGAGGCAAACTAAATGGTGAGAA
TTTACCTGCCTATCTTTATCATCTCTGTCAAGCATGTGCT
>TRINITY_DN118707_c7_g1_i1 from sample A1 / Example unspliced isoform:TTTTATAGGGACAGAAAGGGCGCACGGTGGGAAATCTCATGATTGCCAGAGTGGACTTTCCCAGAATTCCCAAACGCCACGGCAGGGCACGGCACGGCACGTCTCTAATTTTGTTTGAATAGCGAGAAGTTGGTTGTTGGGATTCAACCCATCATTAATCATTCTTCTTCAGCTCTCGTCATTTGCATTTCCCACCCGTA
AACTCAACGGATTCGCCCACGATCTTCATCTCCCATCTGAAATCATCGTACCGCCCTCAACTAATTACTGTGGATCAAGAGATTTATATTTCCTTGGGAGGGTCTCGATCCTCTGACGTCTTAAAAGGCCAGTCAGATCTATAATTTAAGAAAGCTGAGGCCGAATGGGAAATGTTTACTGATTTTTCTTTTCTTGAAAT
TCTTAGTCAGTCCGCAGTACCGCTGATAAAGCTGCTGCTCCTTCAGTCCTGACAGCAAAGCATCTTCAATCGACTCGTTCGATTATTCCCAATTTCCCAGTTGTAAAGCAGTTCAAAATTCAAAACAATAATTAGCTGAAGCGGACTCGAAACCGCAACCATTTGTGTACTTGTCTGACTGGGAATTCATACTCGTGAAT
TCGTTGCAGTAATACATTCAGCTTTATGTACTATTTATTTCCCTTTTCTCTAGAATGTTTAAATCTCAGAGACATTTAGGAGTGTAAGGGGTGTTCTCTACACAAACAAGATTGGGTTCTGTAAAGAAAAAAGGAAAGTGGGTTCGCAGCTTGTAGCTCGATAAGGAGTATCTGGAGCAATGATGTTGCTAACGGCTGCC
GCCAAGCGCAGgtttgcagggaaaaacttaaattatgaatatgttatgaagggatgagttgtatatatgtaaattgtacatctgccaggaactagacctgtatatatcatcttttaacgcactgaattaaggttagcctaaaaaaaagtatgcgcaatttatgcacttactgttttgagcaattctttgtttattactcg
ttggttttgtcactggcctaggtaccgtttacctaaataagtgattcataacagaatgcttgtgtctttctccaaatttttccatcacatatgtatttacccgcagatgtctgtggggggtaattgtcttgtgtattaggttcttattttgtgttctttttctcgggatctgcagCGGAGGTTTGAGAATGAATGAAACA
ATGAGGGTAATTATGACAGCAGTTTGTGGAATTGTCATAGGGTTCTTTGTCGGTGCTTCTTTTCCGCGGGATTCTCTTCCCAAGTTTACTTTTCCGCCCAGGCTGATGGCTAACCCCATTAATCTTCAATCTTCCGAGGACAACAATTCAGGAATAGCTGAACAGGTTCTGATGAACTCTGGTCATACATCCCGGCAAAT
ATCAAATGCCACTGGCTCTCCAACTGCTTCTAGAACTGGAAACAACTCTCAGATATATATACCAACAAACCCTCGTGGTGCAGAGACATTGGCTCCAGGCATTGTTGTGCCCGAGACTGACTTATACCTACGTAGATTGTGGGGTAAGCCCAGTGAGGTTTGTTACTTTCTTTAGCCATCAATTTCTCTTGCATTTCAGT
ATGAATTTGGCTACGCAAAGTAAAATTAAAACTGTGGAATTTGGTCTGTTTAGTATCTATCCAGAGTGACTATTTACAAGTACAGAGTTAGAGTATGAATTGTCTGTAGTGAATTATATATATTGAATTACTCTTTCTGTATATAAACATTTCCAATCCATTTCAACTTCTCTTGGGTGCACATCCTGTTTTTTGAACAT
ATGTATCAAATAGTTGTCTTATTTAATAGCTTGCCATATCATGAGAGCATTATGCTTAGGATATTCTTCTTTACTTCAACTTATGTCTTGAGTGTCTATCTGTTCATCTGATAGTGCTTTTCCTTAATTTCTGGCAGCTAATTGAAACTTGATTTATTTGTGACGGAAATGTGCAGGACTTACCATTCAAGCAAAAGTAT
CTAGTGGTTTTCACTGTTGGGTTTGCACAGAAGGATATTGTCAATACTGCTATTTCCAAGTTTTCAGGAAATTTTACAATTCTTCTTTTCCATTATGATGGGAGGACAAGTGAATGGGATCAATTTGAGTGGTCAAAACAAGCAATTCATATCAGTGCAATGAGGCAAACTAAATGGTGGTATGCAAAGCGATTTCTTCA
TCCAGATGTTGTAGCACCTTTTGAATACATATTTATTTGGGATGAAGACCTAGGAGTCGACCACTTCAATGCAGAAGAATACATAAAACTAGTAAGAAAATATGGTTTGGAGATATCGCAACCTGCTTTGGAGGCACACAGTGGTCTAACATGGCAAATGACAAGAAAGAGGGACAATGTGGAAGTGCACAAGGAAACAA
CAGAGCAACCTGGGTGGTGCCATGATCCACATCTACCGCCATGTGCAGGGTTTGTGGAGATAATGGCTCCTGTATTTTCCCGAAAGGCATGGCGCTGTGTTTGGCATATGATTCAGAATGATTTAGTTCATGGATGGGGTTTAGACCTTGCCATTGGAAGGTGTGCACAGCCTGCAAACGAGAATGTTGGAGTTGTTGAT
GCACAGTGGATTGTTCACAACGGTGTCCCTTCATTGGGAAACCAGGGTGAACCTCAACAAGGCAAGCCAGGTTGGGAAGGGGTCCGAACCAGATGTAAAGATGAGTGGACAGAATTTCAGAAGCGAATGGAGAAAGCAGAAAAGGAATACCTGCAAGAAAATTCTCATAGTTAGTGCAGTTTTTGGTGAGGCGCACTCGT
ACATTTCCTATTCCTCGATGTTTCATTGTTTACATTTGTGGCTACCATGAGCCAATTCTTTTAAAGCTTCGAGCTTGCATGTTTTTTGCAATCAAGCTTGATGGCCTTGTATTTAAACTCCCTATCGGTTTTTATGACTGGGCACTCCAGGAAATTTTAAGTGCAAACATTTCTGATGTTAAACATTTACTCTAAGCCTT
TTGGTATGGTCATTAGTTTTTCTTCCTATTCTTTAACAAACACCTGCTCTTGTTATATCTTTTAACACCGTTGACACTCGTTCTTATGTTAAATGGGTTGTCAAAACTTTTCAGACTTCAAGTGTTATAATTCTACACATTTTCCCAAACTATTCAAGTTTGAA
Intron 2 GTATGTATAC ... TTAAATTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 6.32 | 90.5 | 0 | 6 |
| A2 | 8.3 | 89.5 | 4 | 8 |
| A3 | 18.02 | 68.5 | 0 | 15 |
| A4 | 7.19 | 91 | 0 | 7 |
| A5 | 19.89 | 60.5 | 1 | 15 |
| A6 | 0 | 301 | 0 | 0 |
| A7 | 0.46 | 226 | 0 | 1 |
| A8 | 0 | 201.5 | 0 | 0 |
| A9 | 0 | 271 | 0 | 0 |
| A10 | 0 | 181 | 0 | 0 |
>TRINITY_DN108022_c5_g2_i5 from sample A5 / Example spliced isoformGTCGACCACTTCAATGCAGAAGAGTAATTCACTGCCCAATTCTTGAGAGTCTCTGACTGGTGCCTGACTTAATTTTCTGATATAATGATATTATGCTGTGTTTATTATGTCATCTTTATTCTGTGTTTGGGTAGCTAATAAGATTCATGAATTTCAGATACATAAAACTAGTAAGAAAATATGGTTTGGAGATATCGCAA
CCTGCTTTGGAGGCACACAGTGGTCTAACATGGCAAATGACAAGAAAGAGGGACAATGTGGAAGTGCACAAGGAAACAACAGAGCAACCTGGGTGGTGCCATGATCCACATCTACCGCCATGTGCAGGGTTTGTGGAGATAATGGCTCCTGTATTTTCCCGAAAGGCATGGCGCTGTGTTTGGCATATGATTCAGAATGA
TTTAGTTCATGGATGGGGTTTAGACCTTGCCATTGGAAGGTGTGCACAGGTGAGTAGGCATTATATTCTTAAAGTGCCTGTCAATGCCTTTTTACAGTTATGTTTGTAATAGGATCGTTAATTGTTGAGATATGATGTAACAGAGCCTTATATTGATAAAATTGTTAGAGTAACAAAAATAATAGCCCAGGATTTTGGCA
GATCTACTGAATATTCCATTACACATTATAAAAACAGATTTCTACCCAGATGTTGTATATATAAGCTTGACTCTTTGTGCCAATTTTTCCATGACAACACTTTGTGCATCATTGAAATTTACTTTCATTTATAACATATGCGTATCCTATTCATTGGTAATACTAGTTTGCTTTCTAATGGTAATCGTTCCTTGTCTACT
TTATGTACCAAACAAACTAGCTTTGGTTAGCAACTTGTTAACAACTTAACACTGAAAACCGAAAAGGTTTCAAATATCAGCTAGGATATGTATCGCTGTCGTTTTGTTCAATCTGTCTACAGTTTGGGCGAGTGCTTGCTAGCCTCAGGGGGCAGTCCCTATGATCTGAAGTGTAAATATCTAATTTTTAACCCCAAAAG
ACACTTCACATTTGCAAAAAGTTTCTGCTAGGAATGTTATCAGGATAGCAAGCTAAATTCAGATTGACTCTTGGATTTATCAAATAAAGTCGGTTCTGGTGTAAATCTGCACTGTTTTACTTCAGATCTGCAATTAAAAACTTGCAGATCTGCACTTCAAAAGTTGCATATCTGCAAGTTTTTCCCTCAAAACCAGCAAA
TAAAAGTTTTGTTTTTGAAGTTTTTAACTTGTG
>TRINITY_DN108022_c5_g2_i4 from sample A5 / Example unspliced isoform:ACATCTACCGCCATGTGCAGGgtatgtatacgactataagttggcaatatattcatgtttgttgatgtgatactcttcctgacatacagctttttgttttattatgttggaaaataatgtcttactgtttcacagttcttacttccttccaatatttcttatttccatgtgagttgtaaaacttggtggtccaaatagaa
acatgattgtgatctgcttttcttaaatttagGTTTGTGGAGATAATGGCTCCTGTATTTTCCCGAAAGGCATGGCGCTGTGTTTGGCATATGATTCAGGTAAAATATCAAGTACATTTCCGTTTCTCAAGTTTTTGATGGTTCTTTCATACCCAATGGATATCTTGCTATCGTCACAGTTTGATTAGTGTTATTGCAGA
ATGATTTAGTTCATGGATGGGGTTTAGACCTTGCCATTGGAAGGTGTGCACAGGTGAGTAGGCATTATATTCTTAAAGTGCCTGTCAATGCCTTTTTACAGTTATGTTTGTAATAGGATCGTTAATTGTTGAGATATGATGTAACAGAGCCTTATATTGATAAAATTGTTAGAGTAACAAAAATAATAGCCCAGGATTTT
GGCAGATCTACTGAATATTCCATTACACATTATAAAAACAGATTTCTACCCAGATGTTGTATATATAAGCTTGACTCTTTGTGCCAATTTTTCCATGACAACACTTTGTGCATCATTGAAATTTACTTTCATTTATAACATATGCGTATCCTATTCATTGGTAATACTAGTTTGCTTTCTAATGGTAATCGTTCCTTGTC
TACTTTATGTACCAAACAAACTAGCTTTGGTTAGCAACTTGTTAACAACTTAACACTGAAAACCGAAAAGGTTTCAAATATCAGCTAGGATATGTATCGCTGTCGTTTTGTTCAATCTGTCTACAGTTTGGGCGAGTGCTTGCTAGCCTCAGGGGGCAGTCCCTATGATCTGAAGTGTAAATATCTAATTTTTAACCCCA
AAAGACACTTCACATTTGCAAAAAGTTTCTGCTAGGAATGTTATCAGGATAGCAAGCTAAATTCAGATTGACTCTTGGATTTATCAAATAAAGTCGGTTCTGGTGTAAATCTGCACTGTTTTACTTCAGATCTGCAATTAAAAACTTGCAGATCTGCACTTCAAAAGTTGCATATCTGCAAGTTTTTCCCTCAAAACCAG
CAAATAAAAGTTTTGTTTTTGAAGTTTTTAACTTGTG
Intron 3 GTGAGGCGCA ... TGTACTATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 88.99 | 5.8 | 46.3 | 0 |
| A2 | 86.79 | 11.3 | 67 | 4 |
| A3 | 92.45 | 4.9 | 57.5 | 1 |
| A4 | 84.53 | 3.7 | 20.2 | 2.6 |
| A5 | 82.12 | 8.7 | 40 | 2 |
| A6 | 89.53 | 69.3 | 551.7 | 6 |
| A7 | 92.97 | 27.5 | 335.4 | 4 |
| A8 | 90.29 | 51.1 | 442 | 19 |
| A9 | 87.88 | 56.6 | 377.5 | 4 |
| A10 | 89.47 | 26.3 | 210.1 | 3 |
>TRINITY_DN38619_c1_g1_i5 from sample A8 / Example spliced isoformGTGATCCCTCAATCCGTCTTTGTTGGTTGTAGTCCCTAGAAGTCGTAGTAGTCCCTACGATTCCCTAGGTCTTTATGCTCTCACAGACTCTGTGGCTCTCGCTGAGCTCTGATACCATATCACGGAAATAGAACACGCAAATAAACCAAGATAACTCATAAGAATTATCTGTATTGTATTGCATAAATGAGAAAGTGAAA
TTTTTTTGACAGAGTTACAATCAAGTCGAGTCAATCCACTTCATGCATGTGGGATAGATCTAGAAACACAATAAAATGAAATAAAGCATAAAAGCATAAAATAACCTAAATTCTAAGTGACTTTATTAATGCCTGTCTAATATCTAATTGACCATTATAATCTGAGATTGACTTAACACCCTCGTGAGGTTTTCCTCAAT
CATGTTTTCCAATTCTGATTTCTTATGAATGCCTTCTCAATTTTTTTGCTAGGTTTCCCTCAGTCATGTTTTCCAATGCTGATTTCTTATGAATGCCTTTTCAAGTTTTTTTATAACTTTACTATTCTATAGAAAAACATATTATTGTAACGTTTCATAAAAATAATAAACTTACACCTGTGATTCGCTGATATTGTACT
GCTTTTCATAAAGTCAACTTTGGGTTAGTGGACTAGGATGAGATTTGGTGACAGATGGGGATTTTAGGGTATGGAGTAAGCGACAGTGCCTGATAACTCCCCCATGCACATTTTTGTGTGTGTGTATATATATATATTGAAATTGAAAACTAGTCCATAAAACTAATTGCAAATGATATGTCATATAGGCATTTAGAAAT
AAAAAATAGCAATACATTTAAAGAAGTGTCAGGCTTATGGGTAATGTCAATAATTTTGAAATAGGTAAATCACAGGTCATTATAATTTACCATCGTTTTTTCCAATTTCAATTTCTTTAGAATATATTTTGAAGTTTTTTTTATAAGCTTAGTGTTCTATGAAGAATCTACTCATAGGTCAGTTGGCTTTGCAGACATTT
AAATAAAAATATGCGTGTCTGTATATATATTTATTGGGGGCAGCTGTAGGGGATGCCCAACTTAGTCTTTTTGTAGGGTATGCTGCAAGACATCCCTCTCAATCAGCGATACTGTGGGGATGTTCCCATTCCAACTCTTGTCCCTGATTTGCTGGGGACCAAGGGGGCACATTCTGGGCCCACAAAGGCATGTCCCTGAA
CTGCTGGAAGGTGTCCTCATTATTCACTGTTTTTTAACTCTTTTGAAACTTTGTAGAAGGTTAAAACCTCTCAAACTATTTCATTAAGTGATTGAGAGTGTGCTCCTATGACTTTCAAGGATGAGGGACATGGGGATTGGTGATGAGATTCCAACATAGCCGGATGCTGACCCCAGGGGGGCAGCATAAATTCTTAATAA
ATGTAGATTTAAAATTTTAAATATCTAAAAAGAATATAGAAATTAAATTTTAAAGATCTAGAACAATAGAGCTGAGTGAGTCATACAAAGAATGAACATTAAATATATTATTAGACATGCACCATAATGGATAAATCATCAATTTTCCCATTAGTAGTGAAAACGAAAATCTACTGAACTATCCGATTTATCATTCATTG
ACAGAATCATGATTCATTCAGTATATATTCCAAGTTCAATTCATTTAGGATTTTACTAATCATAATAATCTTATATGCAATCGAAATAGTACAAGTAACAGAAAGCATGCTTGCAGCATTAATAAGAAAGACAATGTTCTCTCCAAGCATTACCAAGCTGAAAATCATTCCTTGCTCAAACATCTGTCCTCCTGAGTCCT
TATTCAAAGTCTTCTCAGTTGAAAGAACAACCCTGCTAAGCTGCTGTCACCTTTTTGACAAATTGTTGATGATTATTTTTTGTGTGCTACTTTTTAATGTAAAGGACTATATTAGGCATCCAGTGTGGTTAGTGGGCAAGATAATATATAGAGGGAATGGGTTCTTTAGTGAAGTGAAACTTTGAAAAAAAGGGAAAAGT
GGATGATATTGGGATACCCAGATGTACTTGGCACTTGGGGGATGTACCCTGACCATACTAGATATGTCTTTTGATGCACTTTTACTTGGGGATGTCTCTGACGTCACTCTTCCCCTGATAACCTTGTGTTCAAATTAGTTTGTAGTATGAAGATTTTCTTCAATGGCTATGTCACATTCTCGTTGCTTTATAATGTGAAT
GGTTTTTTTGTTTCTAATCCATGCATGGTGACCTTTGCAGGGTGAACCTCAACAAGGCAAGCCAGGTTGGGAAGGGGTCCGAACCAGATGTAAAGATGAGTGGACAGAATTTCAGAAGCGAATGGAGAAAGCAGAAAAGGAATACCTGCAAGAAAATTCTCATAGTTAGTGCAGTTTTTGAGTCGTTTGATAAGCTGATG
GTGGTTGACATCTTAACTCGGAATCTATAGCTGTGGCTGCAATTATTCAGATGGGGCAGGTGAGATTAATATAATAAAAAACTAAGGGATTTTATGTGCA
>TRINITY_DN38619_c1_g1_i3 from sample A8 / Example unspliced isoform:AACCAATCCAGGTGGTTCCTTGCAGAGGGGAATGGATTGAATCTTACCAGTGTGAATTCCGTTATACTGAACTTCACTAATACTAATTTCTATTATATCAGGTGGTATGCAAAGCGATTTCTTCATCCAGATGTTGTAGCACCTTTTGAATACATATTTATTTGGGATGAAGACCTAGGAGTCGACCACTTCAATGCAGA
AGAATACATAAAACTAGTAAGAAAATATGGTTTGGAGATATCGCAACCTGCTTTGGAGGCACACAGTGGTCTAACATGGCAAATGACAAGAAAGAGGGACAATGTGGAAGTGCACAAGGAAACAACAGAGCAACCTGGGTGGTGCCATGATCCACATCTACCGCCATGTGCAGGGTTTGTGGAGATAATGGCTCCTGTAT
TTTCCCGAAAGGCATGGCGCTGTGTTTGGCATATGATTCAGAATGATTTAGTTCATGGATGGGGTTTAGACCTTGCCATTGGAAGGTGTGCACAGCCTGCAAACGAGAATGTTGGAGTTGTTGATGCACAGTGGATTGTTCACAACGGTGTCCCTTCATTGGGAAACCAGGGTGAACCTCAACAAGGCAAGCCAGGTTGG
GAAGGGGTCCGAACCAGATGTAAAGATGAGTGGACAGAATTTCAGAAGCGAATGGAGAAAGCAGAAAAGGAATACCTGCAAGAAAATTCTCATAGTTAGTGCAGTTTTTGgtgaggcgcactcgtacatttcctattcctcgatgtttcattgtttacatttgtggctaccatgagccaattcttttaaagcttcgagct
tgcatgttttttgcaatcaagcttgatggccttgtatttaaactccctatcggtttttatgactgggcactccaggaaattttaagtgcaaacatttctgatgttaaacatttactctaagccttttggtatggtcattagtttttcttcctattctttaacaaacacctgctcttgttatatcttttaacaccgttgac
actcgttcttatgttaaatgggttgtcaaaacttttcagacttcaagtgttataattctacacattttcccaaactattcaagtctgagagtaatttttatttgtactatagAGTCGTTTGATAAGCTGATGGTGGTTGACATCTTAACTCGGAATCTATAGCTGTGGCTGCAATTATTCAGATGGGGCAGGTGAGATTA
ATATAATAAAAAACTAAGGGATTTTATGTGCA
Intron 4 GTAAAATATC ... GTTATTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 41.13 | 82.3 | 57.5 | 34.2 |
| A2 | 34.67 | 76.4 | 40.5 | 14.1 |
| A3 | 50 | 45.6 | 45.6 | 22.3 |
| A4 | 38.23 | 86.3 | 53.4 | 25.4 |
| A5 | 48.31 | 58.5 | 54.8 | 19.5 |
| A6 | 22.1 | 379.2 | 106.2 | 33.5 |
| A7 | 26.3 | 277 | 98.3 | 16.8 |
| A8 | 22.98 | 294.7 | 85.8 | 24.6 |
| A9 | 25.34 | 349.5 | 118.2 | 27.7 |
| A10 | 26.14 | 211 | 74.7 | 11.1 |
>TRINITY_DN118707_c7_g1_i9 from sample A1 / Example spliced isoformTTTTATAGGGACAGAAAGGGCGCACGGTGGGAAATCTCATGATTGCCAGAGTGGACTTTCCCAGAATTCCCAAACGCCACGGCAGGGCACGGCACGGCACGTCTCTAATTTTGTTTGAATAGCGAGAAGTTGGTTGTTGGGATTCAACCCATCATTAATCATTCTTCTTCAGCTCTCGTCATTTGCATTTCCCACCCGTA
AACTCAACGGATTCGCCCACGATCTTCATCTCCCATCTGAAATCATCGTACCGCCCTCAACTAATTACTGTGGATCAAGAGATTTATATTTCCTTGGGAGGGTCTCGATCCTCTGACGTCTTAAAAGGCCAGTCAGATCTATAATTTAAGAAAGCTGAGGCCGAATGGGAAATGTTTACTGATTTTTCTTTTCTTGAAAT
TCTTAGTCAGTCCGCAGTACCGCTGATAAAGCTGCTGCTCCTTCAGTCCTGACAGCAAAGCATCTTCAATCGACTCGTTCGATTATTCCCAATTTCCCAGTTGTAAAGCAGTTCAAAATTCAAAACAATAATTAGCTGAAGCGGACTCGAAACCGCAACCATTTGTGTACTTGTCTGACTGGGAATTCATACTCGTGAAT
TCGTTGCAGTAATACATTCAGCTTTATGTACTATTTATTTCCCTTTTCTCTAGAATGTTTAAATCTCAGAGACATTTAGGAGTGTAAGGGGTGTTCTCTACACAAACAAGATTGGGTTCTGTAAAGAAAAAAGGAAAGTGGGTTCGCAGCTTGTAGCTCGATAAGGAGTATCTGGAGCAATGATGTTGCTAACGGCTGCC
GCCAAGCGCAGCGGAGGTTTGAGAATGAATGAAACAATGAGGGTAATTATGACAGCAGTTTGTGGAATTGTCATAGGGTTCTTTGTCGGTGCTTCTTTTCCGCGGGATTCTCTTCCCAAGTTTACTTTTCCGCCCAGGCTGATGGCTAACCCCATTAATCTTCAATCTTCCGAGGACAACAATTCAGGAATAGCTGAACA
GGTTCTGATGAACTCTGGTCATACATCCCGGCAAATATCAAATGCCACTGGCTCTCCAACTGCTTCTAGAACTGGAAACAACTCTCAGATATATATACCAACAAACCCTCGTGGTGCAGAGACATTGGCTCCAGGCATTGTTGTGCCCGAGACTGACTTATACCTACGTAGATTGTGGGGTAAGCCCAGTGAGGTTTGTT
ACTTTCTTTAGCCATCAATTTCTCTTGCATTTCAGTATGAATTTGGCTACGCAAAGTAAAATTAAAACTGTGGAATTTGGTCTGTTTAGTATCTATCCAGAGTGACTATTTACAAGTACAGAGTTAGAGTATGAATTGTCTGTAGTGAATTATATATATTGAATTACTCTTTCTGTATATAAACATTTCCAATCCATTTC
AACTTCTCTTGGGTGCACATCCTGTTTTTTGAACATATGTATCAAATAGTTGTCTTATTTAATAGCTTGCCATATCATGAGAGCATTATGCTTAGGATATTCTTCTTTACTTCAACTTATGTCTTGAGTGTCTATCTGTTCATCTGATAGTGCTTTTCCTTAATTTCTGGCAGCTAATTGAAACTTGATTTATTTGTGAC
GGAAATGTGCAGGACTTACCATTCAAGCAAAAGTATCTAGTGGTTTTCACTGTTGGGTTTGCACAGAAGGATATTGTCAATACTGCTATTTCCAAGTTTTCAGGAAATTTTACAATTCTTCTTTTCCATTATGATGGGAGGACAAGTGAATGGGATCAATTTGAGTGGTCAAAACAAGCAATTCATATCAGTGCAATGAG
GCAAACTAAATGGTGGTATGCAAAGCGATTTCTTCATCCAGATGTTGTAGCACCTTTTGAATACATATTTATTTGGGATGAAGACCTAGGAGTCGACCACTTCAATGCAGAAGAATACATAAAACTAGTAAGAAAATATGGTTTGGAGATATCGCAACCTGCTTTGGAGGCACACAGTGGTCTAACATGGCAAATGACAA
GAAAGAGGGACAATGTGGAAGTGCACAAGGAAACAACAGAGCAACCTGGGTGGTGCCATGATCCACATCTACCGCCATGTGCAGGGTTTGTGGAGATAATGGCTCCTGTATTTTCCCGAAAGGCATGGCGCTGTGTTTGGCATATGATTCAGAATGATTTAGTTCATGGATGGGGTTTAGACCTTGCCATTGGAAGGTGT
GCACAGCCTGCAAACGAGAATGTTGGAGTTGTTGATGCACAGTGGATTGTTCACAACGGTGTCCCTTCATTGGGAAACCAGGGTGAACCTCAACAAGGCAAGCCAGGTTGGGAAGGGGTCCGAACCAGATGTAAAGATGAGTGGACAGAATTTCAGAAGCGAATGGAGAAAGCAGAAAAGGAATACCTGCAAGAAAATTC
TCATAGTTAGTGCAGTTTTTGGTGAGGCGCACTCGTACATTTCCTATTCCTCGATGTTTCATTGTTTACATTTGTGGCTACCATGAGCCAATTCTTTTAAAGCTTCGAGCTTGCATGTTTTTTGCAATCAAGCTTGATGGCCTTGTATTTAAACTCCCTATCGGTTTTTATGACTGGGCACTCCAGGAAATTTTAAGTGC
AAACATTTCTGATGTTAAACATTTACTCTAAGCCTTTTGGTATGGTCATTAGTTTTTCTTCCTATTCTTTAACAAACACCTGCTCTTGTTATATCTTTTAACACCGTTGACACTCGTTCTTATGTTAAATGGGTTGTCAAAACTTTTCAGACTTCAAGTGTTATAATTCTACACATTTTCCCAAACTATTCAAGTTTGAA
>TRINITY_DN118707_c7_g1_i18 from sample A1 / Example unspliced isoform:AATGTGGAAGTGCACAAGTAAGAGGCTGTTAATTTCTCTTTTCATTTTTGACGTTTTTCTTGATGATTCTTGGAGTTTTATCTTGTATTAAAATTTTGAAATTCTGATGTAATCTGAACAGGGAAACAACAGAGCAACCTGGGTGGTGCCATGATCCACATCTACCGCCATGTGCAGGGTTTGTGGAGATAATGGCTCCT
GTATTTTCCCGAAAGGCATGGCGCTGTGTTTGGCATATGATTCAGgtaaaatatcaagtacatttccgtttctcaagtttttgatggttctttcatacccaatggatatcttgctatcgtcacagtttgattagtgttattgcagAATGATTTAGTTCATGGATGGGGTTTAGACCTTGCCATTGGAAGGTGTGCACAG
Intron 5 GTACCTATTG ... AACAATTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 58.14 | 54 | 6 | 75 |
| A2 | 61.19 | 52 | 28 | 82 |
| A3 | 62.94 | 63 | 14 | 107 |
| A4 | 61.16 | 47 | 14 | 74 |
| A5 | 58.72 | 45 | 22 | 64 |
| A6 | 67.03 | 61 | 3 | 124 |
| A7 | 63.49 | 69 | 7 | 120 |
| A8 | 61.72 | 49 | 4 | 79 |
| A9 | 63.52 | 58 | 7 | 101 |
| A10 | 56.5 | 97 | 11 | 126 |
>TRINITY_DN112273_c2_g1_i18 from sample A2 / Example spliced isoformATCAAAACCCCGGAGAAGCCGGCTTTTACGAATTTTCAAAACCCCGGAGAAGTTGACTTGATTACTTAGAAGGAACGGGGTTCAAACTTCAGTGTACATGTTTAAACGAAACACAAATTATTATATATACATCACACACTTCGCAAGCTCAAACTGTAACGAATTTTAATAACAAGCCATGCTTTTATCGAGGCAGTGGC
ATGTCATGGAGTCTCATGGCCTCCCATGAAACTTATCCTGCGTTTTTATAGGGACTTTCCCAGAATTCCCAAACGCCACGGCAGGGCACGGCACGGCACGTCTCTAATTTTGTTTGAATAGCGAGAAGTTGGTTGTTGGGATTCAACCCATCATTAATCATTCTTCTTCAGCTCTCGTCATTTGCATTTCCCACCCGTAA
ACTCAACGGATTCGCCCACGATCTTCATCTCCCATCTGAAATCATCGTACCGCCCTCAACTAATTACTGTGGATCAAGAGATTTATATTTCCTTGGGAGGGTCTCGATCCTCTGACGTCTTAAAAGGCCAGTCAGATCTATAATTTAAGAAAGCTGAGGCCGAATGGGAAATGTTTACTGATTTTTCTTTTCTTGAAATT
CTTAGTCAGTCCGCAGTACCGCTGATAAAGCTGCTGCTCCTTCAGTCCTGACAGCAAAGCATCTTCAATCGACTCGTTCGATTATTCCCAATTTCCCAGTTGTAAAGCAGTTCAAAATTCAAAACAATAATTAGCTGAAGCGGACTCGAAACCGCAACCATTTGTGTACTTGTCTGACTGGGAATTCATACTCGTGAATT
CGTTGCAGTAATACATTCAGCTTTATGTACTATTTATTTCCCTTTTCTCTAGAATGTTTAAATCTCAGAGACATTTAGGAGTGTAAGGGGTGTTCTCTACACAAACAAGATTGGGTTCTGTAAAGAAAAAAGGAAAGTGGGTTCGCAGCTTGTAGCTCGATAAGGAGTATCTGGAGCAATGATGTTGCTAACGGCTGCCG
CCAAGCGCAGCGGAGGTTTGAGAATGAATGAAACAATGAGGGTAATTATGACAGCAGTTTGTGGAATTGTCATAGGGTTCTTTGTCGGTGCTTCTTTTCCGCGGGATTCTCTTCCCAAGGAATAGCTGAACAGGTTCTGATGAACTCTGGTCATACATCCCGGCAAATATCAAATGCCACTGGCTCTCCAACTGCTTCTA
GAACTGGAAACAACTCTCAGATATATATACCAACAAACCCTCGTGGTGCAGAGACATTGGCTCCAGGCATTGTTGTGCCCGAGACTGACTTATACCTACGTAGATTGTGGGGTAAGCCCAGTGAGGACTTACCATTCAAGCAAAAGTATCTAGTGGTTTTCACTGTTGGGTTTGCACAGAAGGATATTGTCAATACTGCT
ATTTCCAAGTTTTCAGGAAATTTTACAATTCTTCTTTTCCATTATGATGGGAGGACAAGTGAATGGGATCAATTTGAGTGGTCAAAACAAGCAATTCATATCAGTGCAATGAGGCAAACTAAATGGTGGTATGCAAAGCGATTTCTTCATCCAGATGTTGTAGCACCTTTTGAATACATATTTATTTGGGATGAAGACCT
AGGAGTCGACCACTTCAATGCAGAAGAATACATAAAACTAGTAAGAAAATATGGTTTGGAGATATCGCAACCTGCTTTGGAGGCACACAGTGGTCTAACATGGCAAATGACAAGAAAGAGGGACAATGTGGAAGTGCACAAGGAAACAACAGAGCAACCTGGGTGGTGCCATGATCCACATCTACCGCCATGTGCAGGGT
TTGTGGAGATAATGGCTCCTGTATTTTCCCGAAAGGCATGGCGCTGTGTTTGGCATATGATTCAGAATGATTTAGTTCATGGATGGGGTTTAGACCTTGCCATTGGAAGGTGTGCACAGCCTGCAAACGAGAATGTTGGAGTTGTTGATGCACAGTGGATTGTTCACAACGGTGTCCCTTCATTGGGAAACCAGGGTGAA
CCTCAACAAGGCAAGCCAGGTTGGGAAGGGGTCCGAACCAGATGTAAAGATGAGTGGACAGAATTTCAGAAGCGAATGGAGAAAGCAGAAAAGGAATACCTGCAAGAAAATTCTCATAGTTAGTGCAGTTTTTGGTGAGGCGCACTCGTACATTTCCTATTCCTCGATGTTTCATTGTTTACATTTGTGGCTACCATGAG
CCAATTCTTTTAAAGCTTCGAGCTTGCATGTTTTTTGCAATCAAGCTTGATGGCCTTGTATTTAAACTCCCTATCGGTTTTTATGACTGGGCACTCCAGGAAATTTTAAGTGCAAACATTTCTGATGTTAAACATTTACTCTAAGCCTTTTGGTATGGTCATTAGTTTTTCTTCCTATTCTTTAACAAACACCTGCTCTT
GTTATATCTTTTAACACCGTTGACACTCGTTCTTATGTTAAATGGGTTGTCAAAACTTTTCAGACTTCAAGTGTTATAATTCTACACATTTTCCCAAACTATTCAAGTTTGAGAGTAATTTTTATTTGTACTATAGAGTCGTTTGATAAGCTGACGGT
>TRINITY_DN112273_c2_g1_i6 from sample A2 / Example unspliced isoform:ATCAAAACCCCGGAGAAGCCGGCTTTTACGAATTTTCAAAACCCCGGAGAAGTTGACTTGATTACTTAGAAGGAACGGGGTTCAAACTTCAGTGTACATGTTTAAACGAAACACAAATTATTATATATACATCACACACTTCGCAAGCTCAAACTGTAACGAATTTTAATAACAAGCCATGCTTTTATCGAGGCAGTGGC
ATGTCATGGAGTCTCATGGCCTCCCATGAAACTTATCCTGCGTTTTTATAGGGACTTTCCCAGAATTCCCAAACGCCACGGCAGGGCACGGCACGGCACGTCTCTAATTTTGTTTGAATAGCGAGAAGTTGGTTGTTGGGATTCAACCCATCATTAATCATTCTTCTTCAGCTCTCGTCATTTGCATTTCCCACCCGTAA
ACTCAACGGATTCGCCCACGATCTTCATCTCCCATCTGAAATCATCGTACCGCCCTCAACTAATTACTGTGGATCAAGAGATTTATATTTCCTTGGGAGGGTCTCGATCCTCTGACGTCTTAAAAGGCCAGTCAGATCTATAATTTAAGAAAGCTGAGGCCGAATGGGAAATGTTTACTGATTTTTCTTTTCTTGAAATT
CTTAGTCAGTCCGCAGTACCGCTGATAAAGCTGCTGCTCCTTCAGTCCTGACAGCAAAGCATCTTCAATCGACTCGTTCGATTATTCCCAATTTCCCAGTTGTAAAGCAGTTCAAAATTCAAAACAATAATTAGCTGAAGCGGACTCGAAACCGCAACCATTTGTGTACTTGTCTGACTGGGAATTCATACTCGTGAATT
CGTTGCAGTAATACATTCAGCTTTATGTACTATTTATTTCCCTTTTCTCTAGAATGTTTAAATCTCAGAGACATTTAGGAGTGTAAGGGGTGTTCTCTACACAAACAAGATTGGGTTCTGTAAAGAAAAAAGGAAAGTGGGTTCGCAGCTTGTAGCTCGATAAGGAGTATCTGGAGCAATGATGTTGCTAACGGCTGCCG
CCAAGCGCAGGTTTGCAGGGAAAAACTTAAATTATGAATATGTTATGAAGGGATGAGTTGTATATATGTAAATTGTACATCTGCCAGGAACTAGACCTGTATATATCATCTTTTAACGCACTGAATTAAGGTTAGCCTAAAAAAAAGTATGCGCAATTTATGCACTTACTGTTTTGAGCAATTCTTTGTTTATTACTCGT
TGGTTTTGTCACTGGCCTAGGTACCGTTTACCTAAATAAGTGATTCATAACAGAATGCTTGTGTCTTTCTCCAAATTTTTCCATCACATATGTATTTACCCGCAGATGTCTGTGGGGGGTAATTGTCTTGTGTATTAGGTTCTTATTTTGTGTTCTTTTTCTCGGGATCTGCAGCGGAGGTTTGAGAATGAATGAAACAA
TGAGGGTAATTATGACAGCAGTTTGTGGAATTGTCATAGGGTTCTTTGTCGGTGCTTCTTTTCCGCGGGATTCTCTTCCCAAGgtacctattgtgcattggtccttctcttccaattcaaaccattaagaatttgataactccattttaagttgcgttgttgttttcattcagttgtgataatttttgaatatgagtgct
tttggttggcagtttacttttccgcccaggctgatggctaaccccattaatcttcaatcttccgaggacaacaattcagGAATAGCTGAACAGGTTCTGATGAACTCTGGTCATACATCCCGGCAAATATCAAATGCCACTGGCTCTCCAACTGCTTCTAGAACTGGAAACAACTCTCAGATATATATACCAACAAACCC
TCGTGGTGCAGAGACATTGGCTCCAGGCATTGTTGTGCCCGAGACTGACTTATACCTACGTAGATTGTGGGGTAAGCCCAGTGAGGACTTACCATTCAAGCAAAAGTATCTAGTGGTTTTCACTGTTGGGTTTGCACAGAAGGATATTGTCAATACTGCTATTTCCAAGTTTTCAGGAAATTTTACAATTCTTCTTTTCC
ATTATGATGGGAGGACAAGTGAATGGGATCAATTTGAGTGGTCAAAACAAGCAATTCATATCAGTGCAATGAGGCAAACTAAATGGTGGTATGCAAAGCGATTTCTTCATCCAGATGTTGTAGCACCTTTTGAATACATATTTATTTGGGATGAAGACCTAGGAGTCGACCACTTCAATGCAGAAGAATACATAAAACTA
GTAAGAAAATATGGTTTGGAGATATCGCAACCTGCTTTGGAGGCACACAGTGGTCTAACATGGCAAATGACAAGAAAGAGGGACAATGTGGAAGTGCACAAGGAAACAACAGAGCAACCTGGGTGGTGCCATGATCCACATCTACCGCCATGTGCAGGGTTTGTGGAGATAATGGCTCCTGTATTTTCCCGAAAGGCATG
GCGCTGTGTTTGGCATATGATTCAGAATGATTTAGTTCATGGATGGGGTTTAGACCTTGCCATTGGAAGGTGTGCACAGCCTGCAAACGAGAATGTTGGAGTTGTTGATGCACAGTGGATTGTTCACAACGGTGTCCCTTCATTGGGAAACCAGGGTGAACCTCAACAAGGCAAGCCAGGTTGGGAAGGGGTCCGAACCA
GATGTAAAGATGAGTGGACAGAATTTCAGAAGCGAATGGAGAAAGCAGAAAAGGAATACCTGCAAGAAAATTCTCATAGTTAGTGCAGTTTTTGGTGAGGCGCACTCGTACATTTCCTATTCCTCGATGTTTCATTGTTTACATTTGTGGCTACCATGAGCCAATTCTTTTAAAGCTTCGAGCTTGCATGTTTTTTGCAA
TCAAGCTTGATGGCCTTGTATTTAAACTCCCTATCGGTTTTTATGACTGGGCACTCCAGGAAATTTTAAGTGCAAACATTTCTGATGTTAAACATTTACTCTAAGCCTTTTGGTATGGTCATTAGTTTTTCTTCCTATTCTTTAACAAACACCTGCTCTTGTTATATCTTTTAACACCGTTGACACTCGTTCTTATGTTA
AATGGGTTGTCAAAACTTTTCAGACTTCAAGTGTTATAATTCTACACATTTTCCCAAACTATTCAAGTTTGAGAGTAATTTTTATTTGTACTATAGAGTCGTTTGATAAGCTGACGGT
Intron 6 GTTTGTTACT ... AAATGTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 20.11 | 69.5 | 18.3 | 17.7 |
| A2 | 13.11 | 72.9 | 5.4 | 17.6 |
| A3 | 16.3 | 63.8 | 12.6 | 13.5 |
| A4 | 25.49 | 50.6 | 14.1 | 21.7 |
| A5 | 8.31 | 61.6 | 6.1 | 5.7 |
| A6 | 12.19 | 139.1 | 14.5 | 27.5 |
| A7 | 11.34 | 127.2 | 12.6 | 22.7 |
| A8 | 13.28 | 92 | 8.2 | 22.7 |
| A9 | 12.03 | 172.6 | 16.4 | 35.1 |
| A10 | 10.53 | 125 | 10.1 | 21.5 |
>TRINITY_DN118707_c7_g1_i6 from sample A1 / Example spliced isoformTTTTATAGGGACAGAAAGGGCGCACGGTGGGAAATCTCATGATTGCCAGAGTGGACTTTCCCAGAATTCCCAAACGCCACGGCAGGGCACGGCACGGCACGTCTCTAATTTTGTTTGAATAGCGAGAAGTTGGTTGTTGGGATTCAACCCATCATTAATCATTCTTCTTCAGCTCTCGTCATTTGCATTTCCCACCCGTA
AACTCAACGGATTCGCCCACGATCTTCATCTCCCATCTGAAATCATCGTACCGCCCTCAACTAATTACTGTGGATCAAGAGATTTATATTTCCTTGGGAGGGTCTCGATCCTCTGACGTCTTAAAAGGCCAGTCAGATCTATAATTTAAGAAAGCTGAGGCCGAATGGGAAATGTTTACTGATTTTTCTTTTCTTGAAAT
TCTTAGTCAGTCCGCAGTACCGCTGATAAAGCTGCTGCTCCTTCAGTCCTGACAGCAAAGCATCTTCAATCGACTCGTTCGATTATTCCCAATTTCCCAGTTGTAAAGCAGTTCAAAATTCAAAACAATAATTAGCTGAAGCGGACTCGAAACCGCAACCATTTGTGTACTTGTCTGACTGGGAATTCATACTCGTGAAT
TCGTTGCAGTAATACATTCAGCTTTATGTACTATTTATTTCCCTTTTCTCTAGAATGTTTAAATCTCAGAGACATTTAGGAGTGTAAGGGGTGTTCTCTACACAAACAAGATTGGGTTCTGTAAAGAAAAAAGGAAAGTGGGTTCGCAGCTTGTAGCTCGATAAGGAGTATCTGGAGCAATGATGTTGCTAACGGCTGCC
GCCAAGCGCAGCGGAGGTTTGAGAATGAATGAAACAATGAGGGTAATTATGACAGCAGTTTGTGGAATTGTCATAGGGTTCTTTGTCGGTGCTTCTTTTCCGCGGGATTCTCTTCCCAAGTTTACTTTTCCGCCCAGGCTGATGGCTAACCCCATTAATCTTCAATCTTCCGAGGACAACAATTCAGGAATAGCTGAACA
GGTTCTGATGAACTCTGGTCATACATCCCGGCAAATATCAAATGCCACTGGCTCTCCAACTGCTTCTAGAACTGGAAACAACTCTCAGATATATATACCAACAAACCCTCGTGGTGCAGAGACATTGGCTCCAGGCATTGTTGTGCCCGAGACTGACTTATACCTACGTAGATTGTGGGGTAAGCCCAGTGAGGACTTAC
CATTCAAGCAAAAGTATCTAGTGGTTTTCACTGTTGGGTTTGCACAGAAGGATATTGTCAATACTGCTATTTCCAAGTTTTCAGGAAATTTTACAATTCTTCTTTTCCATTATGATGGGAGGACAAGTGAATGGGATCAATTTGAGTGGTCAAAACAAGCAATTCATATCAGTGCAATGAGGCAAACTAAATGGTGAGAA
TTTACCTGCCTATCTTTATCATCTCTGTCAAGCATGTGCT
>TRINITY_DN118707_c7_g1_i1 from sample A1 / Example unspliced isoform:TTTTATAGGGACAGAAAGGGCGCACGGTGGGAAATCTCATGATTGCCAGAGTGGACTTTCCCAGAATTCCCAAACGCCACGGCAGGGCACGGCACGGCACGTCTCTAATTTTGTTTGAATAGCGAGAAGTTGGTTGTTGGGATTCAACCCATCATTAATCATTCTTCTTCAGCTCTCGTCATTTGCATTTCCCACCCGTA
AACTCAACGGATTCGCCCACGATCTTCATCTCCCATCTGAAATCATCGTACCGCCCTCAACTAATTACTGTGGATCAAGAGATTTATATTTCCTTGGGAGGGTCTCGATCCTCTGACGTCTTAAAAGGCCAGTCAGATCTATAATTTAAGAAAGCTGAGGCCGAATGGGAAATGTTTACTGATTTTTCTTTTCTTGAAAT
TCTTAGTCAGTCCGCAGTACCGCTGATAAAGCTGCTGCTCCTTCAGTCCTGACAGCAAAGCATCTTCAATCGACTCGTTCGATTATTCCCAATTTCCCAGTTGTAAAGCAGTTCAAAATTCAAAACAATAATTAGCTGAAGCGGACTCGAAACCGCAACCATTTGTGTACTTGTCTGACTGGGAATTCATACTCGTGAAT
TCGTTGCAGTAATACATTCAGCTTTATGTACTATTTATTTCCCTTTTCTCTAGAATGTTTAAATCTCAGAGACATTTAGGAGTGTAAGGGGTGTTCTCTACACAAACAAGATTGGGTTCTGTAAAGAAAAAAGGAAAGTGGGTTCGCAGCTTGTAGCTCGATAAGGAGTATCTGGAGCAATGATGTTGCTAACGGCTGCC
GCCAAGCGCAGGTTTGCAGGGAAAAACTTAAATTATGAATATGTTATGAAGGGATGAGTTGTATATATGTAAATTGTACATCTGCCAGGAACTAGACCTGTATATATCATCTTTTAACGCACTGAATTAAGGTTAGCCTAAAAAAAAGTATGCGCAATTTATGCACTTACTGTTTTGAGCAATTCTTTGTTTATTACTCG
TTGGTTTTGTCACTGGCCTAGGTACCGTTTACCTAAATAAGTGATTCATAACAGAATGCTTGTGTCTTTCTCCAAATTTTTCCATCACATATGTATTTACCCGCAGATGTCTGTGGGGGGTAATTGTCTTGTGTATTAGGTTCTTATTTTGTGTTCTTTTTCTCGGGATCTGCAGCGGAGGTTTGAGAATGAATGAAACA
ATGAGGGTAATTATGACAGCAGTTTGTGGAATTGTCATAGGGTTCTTTGTCGGTGCTTCTTTTCCGCGGGATTCTCTTCCCAAGTTTACTTTTCCGCCCAGGCTGATGGCTAACCCCATTAATCTTCAATCTTCCGAGGACAACAATTCAGGAATAGCTGAACAGGTTCTGATGAACTCTGGTCATACATCCCGGCAAAT
ATCAAATGCCACTGGCTCTCCAACTGCTTCTAGAACTGGAAACAACTCTCAGATATATATACCAACAAACCCTCGTGGTGCAGAGACATTGGCTCCAGGCATTGTTGTGCCCGAGACTGACTTATACCTACGTAGATTGTGGGGTAAGCCCAGTGAGgtttgttactttctttagccatcaatttctcttgcatttcagt
atgaatttggctacgcaaagtaaaattaaaactgtggaatttggtctgtttagtatctatccagagtgactatttacaagtacagagttagagtatgaattgtctgtagtgaattatatatattgaattactctttctgtatataaacatttccaatccatttcaacttctcttgggtgcacatcctgttttttgaacat
atgtatcaaatagttgtcttatttaatagcttgccatatcatgagagcattatgcttaggatattcttctttacttcaacttatgtcttgagtgtctatctgttcatctgatagtgcttttccttaatttctggcagctaattgaaacttgatttatttgtgacggaaatgtgcagGACTTACCATTCAAGCAAAAGTAT
CTAGTGGTTTTCACTGTTGGGTTTGCACAGAAGGATATTGTCAATACTGCTATTTCCAAGTTTTCAGGAAATTTTACAATTCTTCTTTTCCATTATGATGGGAGGACAAGTGAATGGGATCAATTTGAGTGGTCAAAACAAGCAATTCATATCAGTGCAATGAGGCAAACTAAATGGTGGTATGCAAAGCGATTTCTTCA
TCCAGATGTTGTAGCACCTTTTGAATACATATTTATTTGGGATGAAGACCTAGGAGTCGACCACTTCAATGCAGAAGAATACATAAAACTAGTAAGAAAATATGGTTTGGAGATATCGCAACCTGCTTTGGAGGCACACAGTGGTCTAACATGGCAAATGACAAGAAAGAGGGACAATGTGGAAGTGCACAAGGAAACAA
CAGAGCAACCTGGGTGGTGCCATGATCCACATCTACCGCCATGTGCAGGGTTTGTGGAGATAATGGCTCCTGTATTTTCCCGAAAGGCATGGCGCTGTGTTTGGCATATGATTCAGAATGATTTAGTTCATGGATGGGGTTTAGACCTTGCCATTGGAAGGTGTGCACAGCCTGCAAACGAGAATGTTGGAGTTGTTGAT
GCACAGTGGATTGTTCACAACGGTGTCCCTTCATTGGGAAACCAGGGTGAACCTCAACAAGGCAAGCCAGGTTGGGAAGGGGTCCGAACCAGATGTAAAGATGAGTGGACAGAATTTCAGAAGCGAATGGAGAAAGCAGAAAAGGAATACCTGCAAGAAAATTCTCATAGTTAGTGCAGTTTTTGGTGAGGCGCACTCGT
ACATTTCCTATTCCTCGATGTTTCATTGTTTACATTTGTGGCTACCATGAGCCAATTCTTTTAAAGCTTCGAGCTTGCATGTTTTTTGCAATCAAGCTTGATGGCCTTGTATTTAAACTCCCTATCGGTTTTTATGACTGGGCACTCCAGGAAATTTTAAGTGCAAACATTTCTGATGTTAAACATTTACTCTAAGCCTT
TTGGTATGGTCATTAGTTTTTCTTCCTATTCTTTAACAAACACCTGCTCTTGTTATATCTTTTAACACCGTTGACACTCGTTCTTATGTTAAATGGGTTGTCAAAACTTTTCAGACTTCAAGTGTTATAATTCTACACATTTTCCCAAACTATTCAAGTTTGAA
Intron 7 GTTACCCTAA ... GGATCTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 83.33 | 8 | 25 | 55 |
| A2 | 73.33 | 10 | 25 | 30 |
| A3 | 87.1 | 4 | 17 | 37 |
| A4 | 75 | 7 | 18 | 24 |
| A5 | 69.05 | 13 | 18 | 40 |
| A6 | 84.62 | 2 | 1 | 21 |
| A7 | 94.29 | 1 | 3 | 30 |
| A8 | 87.1 | 2 | 5 | 22 |
| A9 | 78.57 | 3 | 1 | 21 |
| A10 | 76.92 | 6 | 1 | 39 |
>TRINITY_DN39136_c2_g1_i5 from sample A9 / Example spliced isoformCTAACGGCTGCCGCCAAGCGCAGGTTTGCAGGGAAAAACTTAAATTATGAATATGTTATGAAGGGATGAGTTGTATATATGTAAATTGTACATCTGCCAGGAACTAGACCTGTATATATCATCTTTTAACGCACTGAATTAAGCGGAGGTTTGAGAATGAATGAAACAATGAGGGTAATTATGACAGCAGTTTGTGGAAT
TGTCATAGGGTTCTTTGTCGGTGCTTCTTTTCCGCGGGATTCTCTTCCCAAGGAATAGCTGAACAGGTTCTGATGAACTCTGGTCATACATCCCGGCAAATATCAAATGCCACTGGCTCTCCAACTGCTTCTAGAACTGGAAACAACTCTCAGATATATATACCAACAAACCCTCGTGGTGCAGAGACATTGGCTCCAGG
CATTGTTGTGCCCGAGACTGACTTATACCTACGTAGATTGTGGGGTAAGCCCAGTGAGGACTTACCATTCAAGCAAAAGTATCTAGTGGTTTTCACTGTTGGGTTTGCACAGAAGGATATTGTCAATACTGCTATTTCCAAGTTTTCAGGAAATTTTACAATTCTTCTTTTCCATTATGATGGGAGGACAAGTGAATGGG
ATCAATTTGAGTGGTCAAAACAAGCAATTCATATCAGTGCAATGAGGCAAACTAAATGGTGGTATGCAAAGCGATTTCTTCATCCAGATGTTGTAGCACCTTTTGAATACATATTTATTTGGGATGAAGACCTAGGAGTCGACCACTTCAATGCAGAAGAATACATAAAACTAGTAAGAAAATATGGTTTGGAGATATCG
CAACCTGCTTTGGAGGCACACAGTGGTCTAACATGGCAAATGACAAGAAAGAGGGACAATGTGGAAGTGCACAAGGAAACAACAGAGCAACCTGGGTGGTGCCATGATCCACATCTACCGCCATGTGCAGGGTTTGTGGAGATAATGGCTCCTGTATTTTCCCGAAAGGCATGGCGCTGTGTTTGGCATATGATTCAGAA
TGATTTAGTTCATGGATGGGGTTTAGACCTTGCCATTGGAAGGTGTGCACAGCCTGCAAACGAGAATGTTGGAGTTGTTGATGCACAGTGGATTGTTCACAACGGTGTCCCTTCATTGGGAAACCAGGGTGAACCTCAACAAGGCAAGCCAGGTTGGGAAGGGGTCCGAACCAGATGTAAAGATGAGTGGACAGAATTTC
AGAAGCGAATGGAGAAAGCAGAAAAGGAATACCTGCAAGAAAATTCTCATAGTTAGTGCAGTTTTTGGTGAGGCGCACTCGTACATTTCCTATTCCTCGATGTTTCATTGTTTACATTTGTGGCTACCATGAGCCAATTCTTTTAAAGCTTCGAGCTTGCATGTTTTTTGCAATCAAGCTTGATGGCCTTGTATTTAAAC
TCCCTATCGGTTTTTATGACTGGGCACTCCAGGAAATTTTAAGTGCAAACATTTCTGATGTTAAACATTTACTCTAAGCCTTTTGGTATGGTCATTAGTTTTTCTTCCTATTCTTTAACAAACACCTGCTCTTGTTATATCTTTTAACACCGTTGACACTCGTTCTTATGTTAAATGGGTTGTCAAAACTTTTCAGACTT
CAAGTGTTATAATTCTACACATTTTCCCAAACTATTCAAGTCTGAGAGTAATTTTTATTTGTACTATAGAGTCGTTTGATAAGCTGATGGTGGTTGACATCTTAACTCGGAATCTATAGCTGTGGCTGCAATTATTCAGATGGGGCAGGTGAGATTAATATAATAAAAAACTAAGGGATTTTATGTGCATGAATGTGAAA
ATGGCCCGTCGCCTTGAGAAACTAGTTAGATCTATCTTTTGAAGTCAAGTTACCTTATTTGAGAATTCCCAGATTTCCC
>TRINITY_DN39136_c2_g1_i4 from sample A9 / Example unspliced isoform:CTAACGGCTGCCGCCAAGCGCAGGTTTGCAGGGAAAAACTTAAATTATGAATATGTTATGAAGGGATGAGTTGTATATATGTAAATTGTACATCTGCCAGGAACTAGACCTGTATATATCATCTTTTAACGCACTGAATTAAGgttaccctaaaaaaaagtatgcgcaatttatgcacttactgttttgagcaattcttt
gtttattactcgttggttttgtcactggcctaggtaccgtttacctaaataagtgattcataacagaatgcttgtgtctttctccaaatttttccatcacatatgtatttacccgcagatgtctgtggggggtaattgtcttgtgtattaggttcttattttgtgttctttttctcgggatctgcagCGGAGGTTTGAGA
ATGAATGAAACAATGAGGGTAATTATGACAGCAGTTTGTGGAATTGTCATAGGGTTCTTTGTCGGTGCTTCTTTTCCGCGGGATTCTCTTCCCAAGTTTACTTTTCCGCCCAGGCTGATGGCTAACCCCATTAATCTTCAATCTTCCGAGGACAACAATTCAGGAATAGCTGAACAGGTTCTGATGAACTCTGGTCATAC
ATCCCGGCAAATATCAAATGCCACTGGCTCTCCAACTGCTTCTAGAACTGGAAACAACTCTCAGATATATATACCAACAAACCCTCGTGGTGCAGAGACATTGGCTCCAGGCATTGTTGTGCCCGAGACTGACTTATACCTACGTAGATTGTGGGGTAAGCCCAGTGAGGACTTACCATTCAAGCAAAAGTATCTAGTGG
TTTTCACTGTTGGGTTTGCACAGAAGGATATTGTCAATACTGCTATTTCCAAGTTTTCAGGAAATTTTACAATTCTTCTTTTCCATTATGATGGGAGGACAAGTGAATGGGATCAATTTGAGTGGTCAAAACAAGCAATTCATATCAGTGCAATGAGGCAAACTAAATGGTGGTATGCAAAGCGATTTCTTCATCCAGAT
GTTGTAGCACCTTTTGAATACATATTTATTTGGGATGAAGACCTAGGAGTCGACCACTTCAATGCAGAAGAATACATAAAACTAGTAAGAAAATATGGTTTGGAGATATCGCAACCTGCTTTGGAGGCACACAGTGGTCTAACATGGCAAATGACAAGAAAGAGGGACAATGTGGAAGTGCACAAGGAAACAACAGAGCA
ACCTGGGTGGTGCCATGATCCACATCTACCGCCATGTGCAGGGTTTGTGGAGATAATGGCTCCTGTATTTTCCCGAAAGGCATGGCGCTGTGTTTGGCATATGATTCAGAATGATTTAGTTCATGGATGGGGTTTAGACCTTGCCATTGGAAGGTGTGCACAGCCTGCAAACGAGAATGTTGGAGTTGTTGATGCACAGT
GGATTGTTCACAACGGTGTCCCTTCATTGGGAAACCAGGGTGAACCTCAACAAGGCAAGCCAGGTTGGGAAGGGGTCCGAACCAGATGTAAAGATGAGTGGACAGAATTTCAGAAGCGAATGGAGAAAGCAGAAAAGGAATACCTGCAAGAAAATTCTCATAGTTAGTGCAGTTTTTGGTGAGGCGCACTCGTACATTTC
CTATTCCTCGATGTTTCATTGTTTACATTTGTGGCTACCATGAGCCAATTCTTTTAAAGCTTCGAGCTTGCATGTTTTTTGCAATCAAGCTTGATGGCCTTGTATTTAAACTCCCTATCGGTTTTTATGACTGGGCACTCCAGGAAATTTTAAGTGCAAACATTTCTGATGTTAAACATTTACTCTAAGCCTTTTGGTAT
GGTCATTAGTTTTTCTTCCTATTCTTTAACAAACACCTGCTCTTGTTATATCTTTTAACACCGTTGACACTCGTTCTTATGTTAAATGGGTTGTCAAAACTTTTCAGACTTCAAGTGTTATAATTCTACACATTTTCCCAAACTATTCAAGTCTGAGAGTAATTTTTATTTGTACTATAGAGTCGTTTGATAAGCTGATG
GTGGTTGACATCTTAACTCGGAATCTATAGCTGTGGCTGCAATTATTCAGATGGGGCAGGTGAGATTAATATAATAAAAAACTAAGGGATTTTATGTGCATGAATGTGAAAATGGCCCGTCGCCTTGAGAAACTAGTTAGATCTATCTTTTGAAGTCAAGTTACCTTATTTGAGAATTCCCAGATTTCCC
Intron 8 GTAATTCACT ... TGAATTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 13.96 | 109.3 | 12 | 19.9 |
| A2 | 20.05 | 131.3 | 8 | 35.4 |
| A3 | 22.34 | 82.8 | 7 | 24.4 |
| A4 | 21.72 | 133 | 8 | 38.4 |
| A5 | 18.43 | 77.5 | 5 | 17.8 |
| A6 | 11.75 | 297.5 | 5 | 43.1 |
| A7 | 13.47 | 312.3 | 0 | 52.3 |
| A8 | 11.15 | 225.8 | 0 | 31.4 |
| A9 | 11.35 | 264 | 7 | 37.9 |
| A10 | 8.57 | 232 | 6 | 23.4 |
>TRINITY_DN112273_c2_g1_i2 from sample A2 / Example spliced isoformATCAAAACCCCGGAGAAGCCGGCTTTTACGAATTTTCAAAACCCCGGAGAAGTTGACTTGATTACTTAGAAGGAACGGGGTTCAAACTTCAGTGTACATGTTTAAACGAAACACAAATTATTATATATACATCACACACTTCGCAAGCTCAAACTGTAACGAATTTTAATAACAAGCCATGCTTTTATCGAGGCAGTGGC
ATGTCATGGAGTCTCATGGCCTCCCATGAAACTTATCCTGCGTTTTTATAGGGACTTTCCCAGAATTCCCAAACGCCACGGCAGGGCACGGCACGGCACGTCTCTAATTTTGTTTGAATAGCGAGAAGTTGGTTGTTGGGATTCAACCCATCATTAATCATTCTTCTTCAGCTCTCGTCATTTGCATTTCCCACCCGTAA
ACTCAACGGATTCGCCCACGATCTTCATCTCCCATCTGAAATCATCGTACCGCCCTCAACTAATTACTGTGGATCAAGAGATTTATATTTCCTTGGGAGGGTCTCGATCCTCTGACGTCTTAAAAGGCCAGTCAGATCTATAATTTAAGAAAGCTGAGGCCGAATGGGAAATGTTTACTGATTTTTCTTTTCTTGAAATT
CTTAGTCAGTCCGCAGTACCGCTGATAAAGCTGCTGCTCCTTCAGTCCTGACAGCAAAGCATCTTCAATCGACTCGTTCGATTATTCCCAATTTCCCAGTTGTAAAGCAGTTCAAAATTCAAAACAATAATTAGCTGAAGCGGACTCGAAACCGCAACCATTTGTGTACTTGTCTGACTGGGAATTCATACTCGTGAATT
CGTTGCAGTAATACATTCAGCTTTATGTACTATTTATTTCCCTTTTCTCTAGAATGTTTAAATCTCAGAGACATTTAGGAGTGTAAGGGGTGTTCTCTACACAAACAAGATTGGGTTCTGTAAAGAAAAAAGGAAAGTGGGTTCGCAGCTTGTAGCTCGATAAGGAGTATCTGGAGCAATGATGTTGCTAACGGCTGCCG
CCAAGCGCAGCGGAGGTTTGAGAATGAATGAAACAATGAGGGTAATTATGACAGCAGTTTGTGGAATTGTCATAGGGTTCTTTGTCGGTGCTTCTTTTCCGCGGGATTCTCTTCCCAAGTTTACTTTTCCGCCCAGGCTGATGGCTAACCCCATTAATCTTCAATCTTCCGAGGACAACAATTCAGGAATAGCTGAACAG
GTTCTGATGAACTCTGGTCATACATCCCGGCAAATATCAAATGCCACTGGCTCTCCAACTGCTTCTAGAACTGGAAACAACTCTCAGATATATATACCAACAAACCCTCGTGGTGCAGAGACATTGGCTCCAGGCATTGTTGTGCCCGAGACTGACTTATACCTACGTAGATTGTGGGGTAAGCCCAGTGAGGACTTACC
ATTCAAGCAAAAGTATCTAGTGGTTTTCACTGTTGGGTTTGCACAGAAGGATATTGTCAATACTGCTATTTCCAAGTTTTCAGGAAATTTTACAATTCTTCTTTTCCATTATGATGGGAGGACAAGTGAATGGGATCAATTTGAGTGGTCAAAACAAGCAATTCATATCAGTGCAATGAGGCAAACTAAATGGTGGTATG
CAAAGCGATTTCTTCATCCAGATGTTGTAGCACCTTTTGAATACATATTTATTTGGGATGAAGACCTAGGAGTCGACCACTTCAATGCAGAAGAATACATAAAACTAGTAAGAAAATATGGTTTGGAGATATCGCAACCTGCTTTGGAGGCACACAGTGGTCTAACATGGCAAATGACAAGAAAGAGGGACAATGTGGAA
GTGCACAAGGAAACAACAGAGCAACCTGGGTGGTGCCATGATCCACATCTACCGCCATGTGCAGGGTTTGTGGAGATAATGGCTCCTGTATTTTCCCGAAAGGCATGGCGCTGTGTTTGGCATATGATTCAGAATGATTTAGTTCATGGATGGGGTTTAGACCTTGCCATTGGAAGGTGTGCACAGCCTGCAAACGAGAA
TGTTGGAGTTGTTGATGCACAGTGGATTGTTCACAACGGTGTCCCTTCATTGGGAAACCAGGGTGAACCTCAACAAGGCAAGCCAGGTTGGGAAGGGGTCCGAACCAGATGTAAAGATGAGTGGACAGAATTTCAGAAGCGAATGGAGAAAGCAGAAAAGGAATACCTGCAAGAAAATTCTCATAGTTAGTGCAGTTTTT
GGTGAGGCGCACTCGTACATTTCCTATTCCTCGATGTTTCATTGTTTACATTTGTGGCTACCATGAGCCAATTCTTTTAAAGCTTCGAGCTTGCATGTTTTTTGCAATCAAGCTTGATGGCCTTGTATTTAAACTCCCTATCGGTTTTTATGACTGGGCACTCCAGGAAATTTTAAGTGCAAACATTTCTGATGTTAAAC
ATTTACTCTAAGCCTTTTGGTATGGTCATTAGTTTTTCTTCCTATTCTTTAACAAACACCTGCTCTTGTTATATCTTTTAACACCGTTGACACTCGTTCTTATGTTAAATGGGTTGTCAAAACTTTTCAGACTTCAAGTGTTATAATTCTACACATTTTCCCAAACTATTCAAGTTTGAGAGTAATTTTTATTTGTACTA
TAGAGTCGTTTGATAAGCTGACGGT
>TRINITY_DN112273_c2_g1_i12 from sample A2 / Example unspliced isoform:GAATCAGAGATCAAAGTTATGGTGCGGACTCATGTCAGATCCCAGATGGATTTGGGCGTGGAACCAATCCAGGTGGTTCCTTGCAGAGGGGAATGGATTGAATCTTACCAGTGTGAATTCCGTTATACTGAACTTCACTAATACTAATTTCTATTATATCAGGTGGTATGCAAAGCGATTTCTTCATCCAGATGTTGTAG
CACCTTTTGAATACATATTTATTTGGGATGAAGACCTAGGAGTCGACCACTTCAATGCAGAAGAgtaattcactgcccaattcttgagagtctctgactggtgcctgacttaattttctgatataatgatattatgctgtgtttattatgtcatctttattctgtgtttgggtagctaataagattcatgaatttcagAT
ACATAAAACTAGTAAGAAAATATGGTTTGGAGATATCGCAACCTGCTTTGGAGGCACACAGTGGTCTAACATGGCAAATGACAAGAAAGAGGGACAATGTGGAAGTGCACAAGGAAACAACAGAGCAACCTGGGTGGTGCCATGATCCACATCTACCGCCATGTGCAGGGTTTGTGGAGATAATGGCTCCTGTATTTTCC
CGAAAGGCATGGCGCTGTGTTTGGCATATGATTCAG
Intron 9 GTAGGCAATT ... CCTTCACCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 14.35 | 71.2 | 7.5 | 10 |
| A2 | 26.74 | 79.4 | 7.9 | 27 |
| A3 | 19.59 | 66.2 | 4.5 | 15 |
| A4 | 24.94 | 32.5 | 6.9 | 10 |
| A5 | 23.74 | 60.6 | 4 | 17 |
| A6 | 21.27 | 543.8 | 3.7 | 135 |
| A7 | 18.41 | 287.2 | 5.7 | 59 |
| A8 | 19.48 | 490.7 | 5.4 | 107 |
| A9 | 21.34 | 424.6 | 1.5 | 106 |
| A10 | 18.32 | 233.3 | 8.7 | 47.3 |
>TRINITY_DN118707_c7_g1_i9 from sample A1 / Example spliced isoformTTTTATAGGGACAGAAAGGGCGCACGGTGGGAAATCTCATGATTGCCAGAGTGGACTTTCCCAGAATTCCCAAACGCCACGGCAGGGCACGGCACGGCACGTCTCTAATTTTGTTTGAATAGCGAGAAGTTGGTTGTTGGGATTCAACCCATCATTAATCATTCTTCTTCAGCTCTCGTCATTTGCATTTCCCACCCGTA
AACTCAACGGATTCGCCCACGATCTTCATCTCCCATCTGAAATCATCGTACCGCCCTCAACTAATTACTGTGGATCAAGAGATTTATATTTCCTTGGGAGGGTCTCGATCCTCTGACGTCTTAAAAGGCCAGTCAGATCTATAATTTAAGAAAGCTGAGGCCGAATGGGAAATGTTTACTGATTTTTCTTTTCTTGAAAT
TCTTAGTCAGTCCGCAGTACCGCTGATAAAGCTGCTGCTCCTTCAGTCCTGACAGCAAAGCATCTTCAATCGACTCGTTCGATTATTCCCAATTTCCCAGTTGTAAAGCAGTTCAAAATTCAAAACAATAATTAGCTGAAGCGGACTCGAAACCGCAACCATTTGTGTACTTGTCTGACTGGGAATTCATACTCGTGAAT
TCGTTGCAGTAATACATTCAGCTTTATGTACTATTTATTTCCCTTTTCTCTAGAATGTTTAAATCTCAGAGACATTTAGGAGTGTAAGGGGTGTTCTCTACACAAACAAGATTGGGTTCTGTAAAGAAAAAAGGAAAGTGGGTTCGCAGCTTGTAGCTCGATAAGGAGTATCTGGAGCAATGATGTTGCTAACGGCTGCC
GCCAAGCGCAGCGGAGGTTTGAGAATGAATGAAACAATGAGGGTAATTATGACAGCAGTTTGTGGAATTGTCATAGGGTTCTTTGTCGGTGCTTCTTTTCCGCGGGATTCTCTTCCCAAGTTTACTTTTCCGCCCAGGCTGATGGCTAACCCCATTAATCTTCAATCTTCCGAGGACAACAATTCAGGAATAGCTGAACA
GGTTCTGATGAACTCTGGTCATACATCCCGGCAAATATCAAATGCCACTGGCTCTCCAACTGCTTCTAGAACTGGAAACAACTCTCAGATATATATACCAACAAACCCTCGTGGTGCAGAGACATTGGCTCCAGGCATTGTTGTGCCCGAGACTGACTTATACCTACGTAGATTGTGGGGTAAGCCCAGTGAGGTTTGTT
ACTTTCTTTAGCCATCAATTTCTCTTGCATTTCAGTATGAATTTGGCTACGCAAAGTAAAATTAAAACTGTGGAATTTGGTCTGTTTAGTATCTATCCAGAGTGACTATTTACAAGTACAGAGTTAGAGTATGAATTGTCTGTAGTGAATTATATATATTGAATTACTCTTTCTGTATATAAACATTTCCAATCCATTTC
AACTTCTCTTGGGTGCACATCCTGTTTTTTGAACATATGTATCAAATAGTTGTCTTATTTAATAGCTTGCCATATCATGAGAGCATTATGCTTAGGATATTCTTCTTTACTTCAACTTATGTCTTGAGTGTCTATCTGTTCATCTGATAGTGCTTTTCCTTAATTTCTGGCAGCTAATTGAAACTTGATTTATTTGTGAC
GGAAATGTGCAGGACTTACCATTCAAGCAAAAGTATCTAGTGGTTTTCACTGTTGGGTTTGCACAGAAGGATATTGTCAATACTGCTATTTCCAAGTTTTCAGGAAATTTTACAATTCTTCTTTTCCATTATGATGGGAGGACAAGTGAATGGGATCAATTTGAGTGGTCAAAACAAGCAATTCATATCAGTGCAATGAG
GCAAACTAAATGGTGGTATGCAAAGCGATTTCTTCATCCAGATGTTGTAGCACCTTTTGAATACATATTTATTTGGGATGAAGACCTAGGAGTCGACCACTTCAATGCAGAAGAATACATAAAACTAGTAAGAAAATATGGTTTGGAGATATCGCAACCTGCTTTGGAGGCACACAGTGGTCTAACATGGCAAATGACAA
GAAAGAGGGACAATGTGGAAGTGCACAAGGAAACAACAGAGCAACCTGGGTGGTGCCATGATCCACATCTACCGCCATGTGCAGGGTTTGTGGAGATAATGGCTCCTGTATTTTCCCGAAAGGCATGGCGCTGTGTTTGGCATATGATTCAGAATGATTTAGTTCATGGATGGGGTTTAGACCTTGCCATTGGAAGGTGT
GCACAGCCTGCAAACGAGAATGTTGGAGTTGTTGATGCACAGTGGATTGTTCACAACGGTGTCCCTTCATTGGGAAACCAGGGTGAACCTCAACAAGGCAAGCCAGGTTGGGAAGGGGTCCGAACCAGATGTAAAGATGAGTGGACAGAATTTCAGAAGCGAATGGAGAAAGCAGAAAAGGAATACCTGCAAGAAAATTC
TCATAGTTAGTGCAGTTTTTGGTGAGGCGCACTCGTACATTTCCTATTCCTCGATGTTTCATTGTTTACATTTGTGGCTACCATGAGCCAATTCTTTTAAAGCTTCGAGCTTGCATGTTTTTTGCAATCAAGCTTGATGGCCTTGTATTTAAACTCCCTATCGGTTTTTATGACTGGGCACTCCAGGAAATTTTAAGTGC
AAACATTTCTGATGTTAAACATTTACTCTAAGCCTTTTGGTATGGTCATTAGTTTTTCTTCCTATTCTTTAACAAACACCTGCTCTTGTTATATCTTTTAACACCGTTGACACTCGTTCTTATGTTAAATGGGTTGTCAAAACTTTTCAGACTTCAAGTGTTATAATTCTACACATTTTCCCAAACTATTCAAGTTTGAA
>TRINITY_DN118707_c7_g1_i14 from sample A1 / Example unspliced isoform:GGCAAGCCAGGTTGGGAAGGGgtaggcaattttcttaacttctctttctcctaatatattcagactattttggtctaatgttaatcttccatgtttacagtttcatgcattgtatatgcatattccttaattgaacttgtaaatccaccttcaccagGTCCGAACCAGATGTAAAGATGAGTGGACAGAATTTCAGAAGC
GAATGGAGAAAGCAGAAAAGGAATACCTGCAAGAAAATTCTCATAGTTAGTGCAGTTTTTGGTGAGGCGCACTCGTACATTTCCTATTCCTCGATGTTTCATTGTTTACATTTGTGGCTACCATGAGCCAATTCTTTTAAAGCTTCGAGCTTGCATGTTTTTTGCAATCAAGCTTGATGGCCTTGTATTTAAACTCCCTA
TCGGTTTTTATGACTGGGCACTCCAGGAAATTTTAAGTGCAAACATTTCTGATGTTAAACATTTACTCTAAGCCTTTTGGTATGGTCATTAGTTTTTCTTCCTATTCTTTAACAAACACCTGCTCTTGTTATATCTTTTAACACCGTTGACACTCGTTCTTATGTTAAATGGGTTGTCAAAACTTTTCAGACTTCAAGTG
TTATAATTCTACACATTTTCCCAAACTATTCAAGTTTGAA
Intron 10 GTACCTATTG ... TGGTTGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 10.21 | 162.7 | 16.4 | 21 |
| A2 | 22.63 | 100.7 | 32 | 27 |
| A3 | 19.22 | 122 | 22.4 | 36 |
| A4 | 14.89 | 112 | 15.2 | 24 |
| A5 | 19.43 | 126.4 | 26 | 35 |
| A6 | 13.81 | 148.4 | 6.6 | 41 |
| A7 | 11.12 | 202.4 | 13.8 | 37 |
| A8 | 16.08 | 130.7 | 12.4 | 38 |
| A9 | 10.29 | 187.1 | 13 | 30 |
| A10 | 13.26 | 185.4 | 21 | 36 |
>TRINITY_DN118707_c7_g1_i6 from sample A1 / Example spliced isoformTTTTATAGGGACAGAAAGGGCGCACGGTGGGAAATCTCATGATTGCCAGAGTGGACTTTCCCAGAATTCCCAAACGCCACGGCAGGGCACGGCACGGCACGTCTCTAATTTTGTTTGAATAGCGAGAAGTTGGTTGTTGGGATTCAACCCATCATTAATCATTCTTCTTCAGCTCTCGTCATTTGCATTTCCCACCCGTA
AACTCAACGGATTCGCCCACGATCTTCATCTCCCATCTGAAATCATCGTACCGCCCTCAACTAATTACTGTGGATCAAGAGATTTATATTTCCTTGGGAGGGTCTCGATCCTCTGACGTCTTAAAAGGCCAGTCAGATCTATAATTTAAGAAAGCTGAGGCCGAATGGGAAATGTTTACTGATTTTTCTTTTCTTGAAAT
TCTTAGTCAGTCCGCAGTACCGCTGATAAAGCTGCTGCTCCTTCAGTCCTGACAGCAAAGCATCTTCAATCGACTCGTTCGATTATTCCCAATTTCCCAGTTGTAAAGCAGTTCAAAATTCAAAACAATAATTAGCTGAAGCGGACTCGAAACCGCAACCATTTGTGTACTTGTCTGACTGGGAATTCATACTCGTGAAT
TCGTTGCAGTAATACATTCAGCTTTATGTACTATTTATTTCCCTTTTCTCTAGAATGTTTAAATCTCAGAGACATTTAGGAGTGTAAGGGGTGTTCTCTACACAAACAAGATTGGGTTCTGTAAAGAAAAAAGGAAAGTGGGTTCGCAGCTTGTAGCTCGATAAGGAGTATCTGGAGCAATGATGTTGCTAACGGCTGCC
GCCAAGCGCAGCGGAGGTTTGAGAATGAATGAAACAATGAGGGTAATTATGACAGCAGTTTGTGGAATTGTCATAGGGTTCTTTGTCGGTGCTTCTTTTCCGCGGGATTCTCTTCCCAAGTTTACTTTTCCGCCCAGGCTGATGGCTAACCCCATTAATCTTCAATCTTCCGAGGACAACAATTCAGGAATAGCTGAACA
GGTTCTGATGAACTCTGGTCATACATCCCGGCAAATATCAAATGCCACTGGCTCTCCAACTGCTTCTAGAACTGGAAACAACTCTCAGATATATATACCAACAAACCCTCGTGGTGCAGAGACATTGGCTCCAGGCATTGTTGTGCCCGAGACTGACTTATACCTACGTAGATTGTGGGGTAAGCCCAGTGAGGACTTAC
CATTCAAGCAAAAGTATCTAGTGGTTTTCACTGTTGGGTTTGCACAGAAGGATATTGTCAATACTGCTATTTCCAAGTTTTCAGGAAATTTTACAATTCTTCTTTTCCATTATGATGGGAGGACAAGTGAATGGGATCAATTTGAGTGGTCAAAACAAGCAATTCATATCAGTGCAATGAGGCAAACTAAATGGTGAGAA
TTTACCTGCCTATCTTTATCATCTCTGTCAAGCATGTGCT
>TRINITY_DN118707_c7_g1_i8 from sample A1 / Example unspliced isoform:TTTTATAGGGACAGAAAGGGCGCACGGTGGGAAATCTCATGATTGCCAGAGTGGACTTTCCCAGAATTCCCAAACGCCACGGCAGGGCACGGCACGGCACGTCTCTAATTTTGTTTGAATAGCGAGAAGTTGGTTGTTGGGATTCAACCCATCATTAATCATTCTTCTTCAGCTCTCGTCATTTGCATTTCCCACCCGTA
AACTCAACGGATTCGCCCACGATCTTCATCTCCCATCTGAAATCATCGTACCGCCCTCAACTAATTACTGTGGATCAAGAGATTTATATTTCCTTGGGAGGGTCTCGATCCTCTGACGTCTTAAAAGGCCAGTCAGATCTATAATTTAAGAAAGCTGAGGCCGAATGGGAAATGTTTACTGATTTTTCTTTTCTTGAAAT
TCTTAGTCAGTCCGCAGTACCGCTGATAAAGCTGCTGCTCCTTCAGTCCTGACAGCAAAGCATCTTCAATCGACTCGTTCGATTATTCCCAATTTCCCAGTTGTAAAGCAGTTCAAAATTCAAAACAATAATTAGCTGAAGCGGACTCGAAACCGCAACCATTTGTGTACTTGTCTGACTGGGAATTCATACTCGTGAAT
TCGTTGCAGTAATACATTCAGCTTTATGTACTATTTATTTCCCTTTTCTCTAGAATGTTTAAATCTCAGAGACATTTAGGAGTGTAAGGGGTGTTCTCTACACAAACAAGATTGGGTTCTGTAAAGAAAAAAGGAAAGTGGGTTCGCAGCTTGTAGCTCGATAAGGAGTATCTGGAGCAATGATGTTGCTAACGGCTGCC
GCCAAGCGCAGCGGAGGTTTGAGAATGAATGAAACAATGAGGGTAATTATGACAGCAGTTTGTGGAATTGTCATAGGGTTCTTTGTCGGTGCTTCTTTTCCGCGGGATTCTCTTCCCAAGgtacctattgtgcattggtccttctcttccaattcaaaccattaagaatttgataactccattttaagttgcgttgttgt
tttcattcagttgtgataatttttgaatatgagtgcttttggttggcagTTTACTTTTCCGCCCAGGCTGATGGCTAACCCCATTAATCTTCAATCTTCCGAGGACAACAATTCAGGAATAGCTGAACAGGTTCTGATGAACTCTGGTCATACATCCCGGCAAATATCAAATGCCACTGGCTCTCCAACTGCTTCTAGAA
CTGGAAACAACTCTCAGGTATCTGGAAGTCACTCTACTTATATCCCCTCCGATGAATTATATAATTTGATTTTTTTGTAGCATAAACATTCCTAAAACATGATACGCGGGGAACCTTATTTTCTATTCCTGGAAGCTCTGTCTCTTATCGAAATCAGATCAATTAAAGTTAGGTTTTAAACCAGGTTGATCAGTCTTGAA
TGTAGAATTTGTATCAACTAATTAAAGGAATACAAAGTTATTGGAACAAATAGATGCCCTAGAGAAGCTTTTTGATACCTATCGTTAATATGTCCTTTTTTACTTTTTCATTATCAGTCTTAACAGGGAGAATCACAGTTTTTGTCATTAAGGAAGTCCAACTAAACAAAACCATTTCTATAGGCAGCGGAAGGAATAGA
TATTTTGAAATTATTCGTTGCTATGTTGTACTTTGAAGTAGATCCCCATTCTTGCATTTCATGAAGAACTATCAGGAGCAAGTGTAGAAAATTTACATTGTATTTCTCTTTGGAAACAAAAGACAGAATCACGGATTATAATTTACATTGTTCTCTACAAAATAGGCATTCCTATTTACATATCTTTCCATTACACAACT
CTTCCTGTTTGGCCGGAGACTATGTACTAATATACCATATATACAAATCTAGGAAATTACAGTACTAGAGTGATAACAAAAGTTTGAAAATAGAGTTCTGTCAGCTCTAATTCCGTGGGTTTCATTTTGTCATTTAATGATAGAGGCCAATTCCATCTCTCTCAAGTTGCTTGCTTGTCACTTCTTAGCACACATAGCTT
TGGAGTCAACTTTTCAAACAAATATGAAAAGGTCTTTAACAATCTTTTCAGTCCAAGAAATTGAAATGTTAAAAAAAAGAATTGATTGTTAGTGGATGATGAAACCTGCAAAATTAAAATGTGGAAAAGGATTGTTGTTTGTGGGCTAATGATTCCACAAAATTAAAATGCAAGAAAAAATCGCACCATAAGAATTGTTT
GCTATGTCACGTTGAAACTCATATAATTGGAAGTGTGGAAAATGACAGTCCATTATGGGTCTTTGCTTATCATTTCTCACCT
Intron 11 GTGTATATTT ... TAGTTACCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 20.05 | 91.8 | 14.2 | 23 |
| A2 | 23.28 | 72.6 | 14.6 | 22 |
| A3 | 29.49 | 71.8 | 7.4 | 30 |
| A4 | 27.16 | 64.4 | 8.2 | 24 |
| A5 | 24.97 | 45.3 | 11.2 | 15 |
| A6 | 25.76 | 164.3 | 13.8 | 57 |
| A7 | 23 | 154.1 | 9 | 46 |
| A8 | 21.73 | 140.5 | 6.8 | 39 |
| A9 | 17 | 190.5 | 20.1 | 39 |
| A10 | 20.04 | 123.7 | 5.1 | 31 |
>TRINITY_DN112273_c2_g1_i2 from sample A2 / Example spliced isoformATCAAAACCCCGGAGAAGCCGGCTTTTACGAATTTTCAAAACCCCGGAGAAGTTGACTTGATTACTTAGAAGGAACGGGGTTCAAACTTCAGTGTACATGTTTAAACGAAACACAAATTATTATATATACATCACACACTTCGCAAGCTCAAACTGTAACGAATTTTAATAACAAGCCATGCTTTTATCGAGGCAGTGGC
ATGTCATGGAGTCTCATGGCCTCCCATGAAACTTATCCTGCGTTTTTATAGGGACTTTCCCAGAATTCCCAAACGCCACGGCAGGGCACGGCACGGCACGTCTCTAATTTTGTTTGAATAGCGAGAAGTTGGTTGTTGGGATTCAACCCATCATTAATCATTCTTCTTCAGCTCTCGTCATTTGCATTTCCCACCCGTAA
ACTCAACGGATTCGCCCACGATCTTCATCTCCCATCTGAAATCATCGTACCGCCCTCAACTAATTACTGTGGATCAAGAGATTTATATTTCCTTGGGAGGGTCTCGATCCTCTGACGTCTTAAAAGGCCAGTCAGATCTATAATTTAAGAAAGCTGAGGCCGAATGGGAAATGTTTACTGATTTTTCTTTTCTTGAAATT
CTTAGTCAGTCCGCAGTACCGCTGATAAAGCTGCTGCTCCTTCAGTCCTGACAGCAAAGCATCTTCAATCGACTCGTTCGATTATTCCCAATTTCCCAGTTGTAAAGCAGTTCAAAATTCAAAACAATAATTAGCTGAAGCGGACTCGAAACCGCAACCATTTGTGTACTTGTCTGACTGGGAATTCATACTCGTGAATT
CGTTGCAGTAATACATTCAGCTTTATGTACTATTTATTTCCCTTTTCTCTAGAATGTTTAAATCTCAGAGACATTTAGGAGTGTAAGGGGTGTTCTCTACACAAACAAGATTGGGTTCTGTAAAGAAAAAAGGAAAGTGGGTTCGCAGCTTGTAGCTCGATAAGGAGTATCTGGAGCAATGATGTTGCTAACGGCTGCCG
CCAAGCGCAGCGGAGGTTTGAGAATGAATGAAACAATGAGGGTAATTATGACAGCAGTTTGTGGAATTGTCATAGGGTTCTTTGTCGGTGCTTCTTTTCCGCGGGATTCTCTTCCCAAGTTTACTTTTCCGCCCAGGCTGATGGCTAACCCCATTAATCTTCAATCTTCCGAGGACAACAATTCAGGAATAGCTGAACAG
GTTCTGATGAACTCTGGTCATACATCCCGGCAAATATCAAATGCCACTGGCTCTCCAACTGCTTCTAGAACTGGAAACAACTCTCAGATATATATACCAACAAACCCTCGTGGTGCAGAGACATTGGCTCCAGGCATTGTTGTGCCCGAGACTGACTTATACCTACGTAGATTGTGGGGTAAGCCCAGTGAGGACTTACC
ATTCAAGCAAAAGTATCTAGTGGTTTTCACTGTTGGGTTTGCACAGAAGGATATTGTCAATACTGCTATTTCCAAGTTTTCAGGAAATTTTACAATTCTTCTTTTCCATTATGATGGGAGGACAAGTGAATGGGATCAATTTGAGTGGTCAAAACAAGCAATTCATATCAGTGCAATGAGGCAAACTAAATGGTGGTATG
CAAAGCGATTTCTTCATCCAGATGTTGTAGCACCTTTTGAATACATATTTATTTGGGATGAAGACCTAGGAGTCGACCACTTCAATGCAGAAGAATACATAAAACTAGTAAGAAAATATGGTTTGGAGATATCGCAACCTGCTTTGGAGGCACACAGTGGTCTAACATGGCAAATGACAAGAAAGAGGGACAATGTGGAA
GTGCACAAGGAAACAACAGAGCAACCTGGGTGGTGCCATGATCCACATCTACCGCCATGTGCAGGGTTTGTGGAGATAATGGCTCCTGTATTTTCCCGAAAGGCATGGCGCTGTGTTTGGCATATGATTCAGAATGATTTAGTTCATGGATGGGGTTTAGACCTTGCCATTGGAAGGTGTGCACAGCCTGCAAACGAGAA
TGTTGGAGTTGTTGATGCACAGTGGATTGTTCACAACGGTGTCCCTTCATTGGGAAACCAGGGTGAACCTCAACAAGGCAAGCCAGGTTGGGAAGGGGTCCGAACCAGATGTAAAGATGAGTGGACAGAATTTCAGAAGCGAATGGAGAAAGCAGAAAAGGAATACCTGCAAGAAAATTCTCATAGTTAGTGCAGTTTTT
GGTGAGGCGCACTCGTACATTTCCTATTCCTCGATGTTTCATTGTTTACATTTGTGGCTACCATGAGCCAATTCTTTTAAAGCTTCGAGCTTGCATGTTTTTTGCAATCAAGCTTGATGGCCTTGTATTTAAACTCCCTATCGGTTTTTATGACTGGGCACTCCAGGAAATTTTAAGTGCAAACATTTCTGATGTTAAAC
ATTTACTCTAAGCCTTTTGGTATGGTCATTAGTTTTTCTTCCTATTCTTTAACAAACACCTGCTCTTGTTATATCTTTTAACACCGTTGACACTCGTTCTTATGTTAAATGGGTTGTCAAAACTTTTCAGACTTCAAGTGTTATAATTCTACACATTTTCCCAAACTATTCAAGTTTGAGAGTAATTTTTATTTGTACTA
TAGAGTCGTTTGATAAGCTGACGGT
>TRINITY_DN112273_c2_g1_i19 from sample A2 / Example unspliced isoform:ATTGTGGGGTAAGCCCAGTGAGGTTTGTTACTTTCTTTAGCCATCAATTTCTCTTGCATTTCAGTATGAATTTGGCTACGCAAAGTAAAATTAAAACTGTGGAATTTGGTCTGTTTAGTATCTATCCAGAGTGACTATTTACAAGTACAGAGTTAGAGTATGAATTGTCTGTAGTGAATTATATATATTGAATTACTCTT
TCTGTATATAAACATTTCCAATCCATTTCAACTTCTCTTGGGTGCACATCCTGTTTTTTGAACATATGTATCAAATAGTTGTCTTATTTAATAGCTTGCCATATCATGAGAGCATTATGCTTAGGATATTCTTCTTTACTTCAACTTATGTCTTGAGTGTCTATCTGTTCATCTGATAGTGCTTTTCCTTAATTTCTGGC
AGCTAATTGAAACTTGATTTATTTGTGACGGAAATGTGCAGGACTTACCATTCAAGCAAAAGTATCTAGTGGTTTTCACTGTTGGGTTTGCACAGAAGGATATTGTCAATACTGCTATTTCCAAGgtgtatatttatattgtttactaattagttgactgtgcttacccatttctaattctgagtctgaaaatttacaac
ttcaacattagtttctactgtagagattataaatattaattactgacaacactattcattatttcttcccccaaattgccactcgtttttctaatttgatcttagttaccagTTTTCAGGAAATTTTACAATTCTTCTTTTCCATTATGATGGGAGGACAAGTGAATGGGATCAATTTGAGTGGTCAAAACAAGCAATTC
ATATCAGTGCAATGAGGCAAACTAAATGGTGAGAATTTACCTGCCTATCTTTATCATCTCTGTCAAGCATGTGCTGTACTGTATACTGC
Intron 12 GTAAGAGGCT ... ATCTGAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 5.25 | 121 | 6.7 | 29.3 |
| A2 | 4.07 | 139.9 | 6 | 31.3 |
| A3 | 7.01 | 88.8 | 6.7 | 20 |
| A4 | 5.82 | 136.7 | 8.7 | 32.7 |
| A5 | 6.32 | 66.7 | 4.7 | 19 |
| A6 | 1.49 | 347.9 | 5 | 84.7 |
| A7 | 1.62 | 310.7 | 5 | 68 |
| A8 | 1.12 | 247.8 | 2.7 | 62 |
| A9 | 1.32 | 316.4 | 4 | 88 |
| A10 | 1.91 | 211.9 | 4 | 52.7 |
>TRINITY_DN118707_c7_g1_i13 from sample A1 / Example spliced isoformTTTTATAGGGACAGAAAGGGCGCACGGTGGGAAATCTCATGATTGCCAGAGTGGACTTTCCCAGAATTCCCAAACGCCACGGCAGGGCACGGCACGGCACGTCTCTAATTTTGTTTGAATAGCGAGAAGTTGGTTGTTGGGATTCAACCCATCATTAATCATTCTTCTTCAGCTCTCGTCATTTGCATTTCCCACCCGTA
AACTCAACGGATTCGCCCACGATCTTCATCTCCCATCTGAAATCATCGTACCGCCCTCAACTAATTACTGTGGATCAAGAGATTTATATTTCCTTGGGAGGGTCTCGATCCTCTGACGTCTTAAAAGGCCAGTCAGATCTATAATTTAAGAAAGCTGAGGCCGAATGGGAAATGTTTACTGATTTTTCTTTTCTTGAAAT
TCTTAGTCAGTCCGCAGTACCGCTGATAAAGCTGCTGCTCCTTCAGTCCTGACAGCAAAGCATCTTCAATCGACTCGTTCGATTATTCCCAATTTCCCAGTTGTAAAGCAGTTCAAAATTCAAAACAATAATTAGCTGAAGCGGACTCGAAACCGCAACCATTTGTGTACTTGTCTGACTGGGAATTCATACTCGTGAAT
TCGTTGCAGTAATACATTCAGCTTTATGTACTATTTATTTCCCTTTTCTCTAGAATGTTTAAATCTCAGAGACATTTAGGAGTGTAAGGGGTGTTCTCTACACAAACAAGATTGGGTTCTGTAAAGAAAAAAGGAAAGTGGGTTCGCAGCTTGTAGCTCGATAAGGAGTATCTGGAGCAATGATGTTGCTAACGGCTGCC
GCCAAGCGCAGGTTTGCAGGGAAAAACTTAAATTATGAATATGTTATGAAGGGATGAGTTGTATATATGTAAATTGTACATCTGCCAGGAACTAGACCTGTATATATCATCTTTTAACGCACTGAATTAAGGTTAGCCTAAAAAAAAGTATGCGCAATTTATGCACTTACTGTTTTGAGCAATTCTTTGTTTATTACTCG
TTGGTTTTGTCACTGGCCTAGGTACCGTTTACCTAAATAAGTGATTCATAACAGAATGCTTGTGTCTTTCTCCAAATTTTTCCATCACATATGTATTTACCCGCAGATGTCTGTGGGGGGTAATTGTCTTGTGTATTAGGTTCTTATTTTGTGTTCTTTTTCTCGGGATCTGCAGCGGAGGTTTGAGAATGAATGAAACA
ATGAGGGTAATTATGACAGCAGTTTGTGGAATTGTCATAGGGTTCTTTGTCGGTGCTTCTTTTCCGCGGGATTCTCTTCCCAAGTTTACTTTTCCGCCCAGGCTGATGGCTAACCCCATTAATCTTCAATCTTCCGAGGACAACAATTCAGGAATAGCTGAACAGGTTCTGATGAACTCTGGTCATACATCCCGGCAAAT
ATCAAATGCCACTGGCTCTCCAACTGCTTCTAGAACTGGAAACAACTCTCAGATATATATACCAACAAACCCTCGTGGTGCAGAGACATTGGCTCCAGGCATTGTTGTGCCCGAGACTGACTTATACCTACGTAGATTGTGGGGTAAGCCCAGTGAGGACTTACCATTCAAGCAAAAGTATCTAGTGGTTTTCACTGTTG
GGTTTGCACAGAAGGATATTGTCAATACTGCTATTTCCAAGTTTTCAGGAAATTTTACAATTCTTCTTTTCCATTATGATGGGAGGACAAGTGAATGGGATCAATTTGAGTGGTCAAAACAAGCAATTCATATCAGTGCAATGAGGCAAACTAAATGGTGGTATGCAAAGCGATTTCTTCATCCAGATGTTGTAGCACCT
TTTGAATACATATTTATTTGGGATGAAGACCTAGGAGTCGACCACTTCAATGCAGAAGAATACATAAAACTAGTAAGAAAATATGGTTTGGAGATATCGCAACCTGCTTTGGAGGCACACAGTGGTCTAACATGGCAAATGACAAGAAAGAGGGACAATGTGGAAGTGCACAAGGAAACAACAGAGCAACCTGGGTGGTG
CCATGATCCACATCTACCGCCATGTGCAGGGTTTGTGGAGATAATGGCTCCTGTATTTTCCCGAAAGGCATGGCGCTGTGTTTGGCATATGATTCAGGTAAAATATCAAGTACATTTCCGTTTCTCAAGTTTTTGATGGTTCTTTCATACCCAATGGATATCTTGCTATCGTCACAGTTTGATTAGTGTTATTGCAGAAT
GATTTAGTTCATGGATGGGGTTTAGACCTTGCCATTGGAAGGTGTGCACAGGTGAGTAGGCATTATATTCTTAAAGTGCCTGTCAATGCCTTTTTACAGTTATGTTTGTAATA
>TRINITY_DN118707_c7_g1_i18 from sample A1 / Example unspliced isoform:AATGTGGAAGTGCACAAgtaagaggctgttaatttctcttttcatttttgacgtttttcttgatgattcttggagttttatcttgtattaaaattttgaaattctgatgtaatctgaacagGGAAACAACAGAGCAACCTGGGTGGTGCCATGATCCACATCTACCGCCATGTGCAGGGTTTGTGGAGATAATGGCTCCT
GTATTTTCCCGAAAGGCATGGCGCTGTGTTTGGCATATGATTCAGGTAAAATATCAAGTACATTTCCGTTTCTCAAGTTTTTGATGGTTCTTTCATACCCAATGGATATCTTGCTATCGTCACAGTTTGATTAGTGTTATTGCAGAATGATTTAGTTCATGGATGGGGTTTAGACCTTGCCATTGGAAGGTGTGCACAG