sp|Q84MC1|GCT22_ARATH ----> Gamma-glutamylcyclotransferase 2-2
Intron 1 GTTGGTCTCT ... TTGTACACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 45.45 | 3 | 5 | 0 |
| A2 | 27.78 | 13 | 4 | 6 |
| A3 | 16.67 | 5 | 1 | 1 |
| A4 | 47.62 | 11 | 10 | 10 |
| A5 | 25 | 3 | 1 | 1 |
| A6 | 33.33 | 5 | 3 | 2 |
| A7 | 25.71 | 13 | 4 | 5 |
| A8 | 9.09 | 5 | 1 | 0 |
| A9 | 21.74 | 9 | 3 | 2 |
| A10 | 30 | 7 | 3 | 3 |
>TRINITY_DN39740_c0_g1_i1 from sample A9 / Example spliced isoformCGAGTTATGGACTATTCACATCACATGAAGATAATGTGAATGCTGGAACAATCTACAACATACTTGGCTGCCATCTCGACGCGAAATTAATGGAAATTTTTTATTGATGTGAGCAGAAATCGGCCTATAAAAACGAAGCTTTGGAGGTCACACAGATATCGGCCCTGTAATCCAATACCCCAACCACTGGGAGTGTTGGA
TATCTTCCCACAGAATTTTTTTGTGAAGTTGCCAGGTTTTGTCTGTAGACGATATTCTGGGGGGTATTGTTCATTTCCAATTTTCATTCTTCTTATGCTGTCAGTCAGATCTACAGCTGCAATTTTGTAGCTCAAACTGCATTGATCTTACCGGTTTGGATTTAGCTTTTTTATATTTCTCAGTTGGGTTCCACTGATTT
GCCTGGCATTTTCATCTTTTGATTTCTGCTGAACCACCCAATTGCAAATTCATTCATTCATTGCGCTGGAACATTCATCATCATTTGATTTGTGCTTTGTTCTGTGGGCTCAGGGGATATTCCGAGGGGCATTGTTCATTTTTAATTTTCATTCTTCTTAAGTTGTCAGTCAGATCTGCAGCTGCAATTTTACAGCTCAA
ACTGCATACAGCTTACCAGTTTGGAATTAGTTTTTTCATTTTTCTCAGTTGGGTTCGGCTGATTTGCCGGGCATCTTGAGCTCTTGATTTCTGCTGAACCACAGTTGTGCAGTTCAAAGTGGTCTGTTGAGGAAGAAAACAAGTCTTAACTGTATAATTTCTGATTCTTAAGGATGGTGCTGTGGGTTTTTGGCTATGGG
TCCTTAATATGGAATCCAGGCTTTCAGGTGGACGAAAATATCCTTGGATATATCAAGGGCTACCGAAGAGTTTTTGATTTAGCTTGTACTGACCACTGTGGGACTCCGCAGTTTCCGGCTAGGACCTTAACACTGGAAGCACAGGAGGGAGCCATCTGTTGGGGAAGAGCCTACTGTGTGAGAGGAGGGCCAGAGAAGGA
AAAATTGGCTATGGAGTATCTGGAAAAGAGGGAATGTGAATATGATATCAAGGGCTCTGTAGATTTTTACACTGAGGAAGGAGAATCTGCAACCCCATTTCTGACTGGAGTTCTATTATTCTTATCTACTCCAAACAATCGCATAAACAAGTACTACCTAGGCCCAGCTCCACTAGAAGAAATGGCAAGACAAATAGCAA
AAGCTTCTGGTCCATGTGGGAATAACCGTGACTATCTTTTCAAGTTGGAAATAACCATGGCTAGCATTGGTCATGAAGACCAGGCGGTGATCAAACTTGCAAATGAAGTGAGGAGAATTCTTGGAGGCATTCATGATGTTCAATCTACCACTGTGATTACTACTAACCTTGGGGTTTTTCTACCCAGAAAAGAAGAGCGG
CTAATTATAGCGTGAGATATACCAATTCTTATGGTTAACCATTTTTAAAATGACCATGTTTTTCAGTACACACATCCCAATTCAGGAAGCATTGCTCTGAAATTTTTGAGTCAAAATTCTATACAGGTTAAGTTGTAATAGGACCATATTCAATTGAGGATATTTGCTTATCCAGTAGCCCAGGGATAGTCATTACAAGT
TCAAATTATGGTTTTGAACCATTGTCAAGTTAAGTTGTAATGGGACCATATTGCATTGAGGATATGTTCTAATTGAGTTACCCAGTTACCCAAGGATAGCTGGTTGGATTTTTAAAGTTTTCCAAAACTTCTATTTTACGAAAAGATTTTTTTATCGAGTAACCAAGTTACCCAAGGATAGCTTGTTAGATTTTTACATT
TTTTGAAAAATTCTTTTTACAGAAGACGAGTGAATTATTTTTTAGAACTCAC
>TRINITY_DN39740_c0_g1_i4 from sample A9 / Example unspliced isoform:CGAGTTATGGACTATTCACATCACATGAAGATAATGTGAATGCTGGAACAATCTACAACATACTTGGCTGCCATCTCGACGCGAAATTAATGGAAATTTTTTATTGATGTGAGCAGAAATCGGCCTATAAAAACGAAGCTTTGGAGGTCACACAGATATCGGCCCTGTAATCCAATACCCCAACCACTGGGAGTGTTGGA
TATCTTCCCACAGAATTTTTTTGTGAAGTTGCCAGGTTTTGTCTGTAGACGATATTCTGGGGGGTATTGTTCATTTCCAATTTTCATTCTTCTTATGCTGTCAGTCAGATCTACAGCTGCAATTTTGTAGCTCAAACTGCATTGATCTTACCGGTTTGGATTTAGCTTTTTTATATTTCTCAGTTGGGTTCCACTGATTT
GCCTGGCATTTTCATCTTTTGATTTCTGCTGAACCACCCAATTGCAAATTCATTCATTCATTGCGCTGGAACATTCATCATCATTTGATTTGTGCTTTGTTCTGTGGGCTCAGGGGATATTCCGAGGGGCATTGTTCATTTTTAATTTTCATTCTTCTTAAGTTGTCAGTCAGATCTGCAGCTGCAATTTTACAGCTCAA
ACTGCATACAGCTTACCAGTTTGGAATTAGTTTTTTCATTTTTCTCAGTTGGGTTCGGCTGATTTGCCGGGCATCTTGAGCTCTTGATTTCTGCTGAACCACAGTTGTGCAGTTCAAAGTGGTCTGTTGAGGAAGAAAACAAGTCTTAACTGTATAATTTCTGgttggtctctgctgtatttttgtgaatattagtgcct
ctctttagtttagtgttttagaaatagaaaacggtttcaggtttgggtttccggaaattctaactggtatgatgttttgtacacagATTCTTAAGGATGGTGCTGTGGGTTTTTGGCTATGGGTCCTTAATATGGAATCCAGGCTTTCAGGTGGACGAAAATATCCTTGGATATATCAAGGGCTACCGAAGAGTTTTTGA
TTTAGCTTGTACTGACCACTGTGGGACTCCGCAGTTTCCGGCTAGGACCTTAACACTGGAAGCACAGGAGGGAGCCATCTGTTGGGGAAGAGCCTACTGTGTGAGAGGAGGGCCAGAGAAGGAAAAATTGGCTATGGAGTATCTGGAAAAGAGGGAATGTGAATATGATATCAAGGGCTCTGTAGATTTTTACACTGAGG
AAGGAGAATCTGCAACCCCATTTCTGACTGGAGTTCTATTATTCTTATCTACTCCAAACAATCGCATAAACAAGTACTACCTAGGCCCAGCTCCACTAGAAGAAATGGCAAGACAAATAGCAAAAGCTTCTGGTCCATGTGGGAATAACCGTGACTATCTTTTCAAGTTGGAAATAACCATGGCTAGCATTGGTCATGAA
GACCAGGCGGTGATCAAACTTGCAAATGAAGTGAGGAGAATTCTTGGAGGCATTCATGATGTTCAATCTACCACTGTGATTACTACTAACCTTGGGGTTTTTCTACCCAGAAAAGAAGAGCGGCTAATTATAGCGTGAGATATACCAATTCTTATGGTTAACCATTTTTAAAATGACCATGTTTTTCAGTACACACATCC
CAATTCAGGAAGCATTGCTCTGAAATTTTTGAGTCAAAATTCTATACAGGTTAAGTTGTAATAGGACCATATTCAATTGAGGATATTTGCTTATCCAGTAGCCCAGGGATAGTCATTACAAGTTCAAATTATGGTTTTGAACCATTGTCAAGTTAAGTTGTAATGGGACCATATTGCATTGAGGATATGTTCTAATTGAG
TTACCCAGTTACCCAAGGATAGCTGGTTGGATTTTTAAAGTTTTCCAAAACTTCTATTTTACGAAAAGATTTTTTTATCGAGTAACCAAGTTACCCAAGGATAGCTTGTTAGATTTTTACATTTTTTGAAAAATTCTTTTTACAGAAGACGAGTGAATTATTTTTTAGAACTCAC
Intron 2 GTGAGTATCT ... AATGCAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 12.5 | 7 | 2 | 1 |
| A2 | 0 | 1 | 0 | 0 |
| A3 | 40 | 3 | 1 | 2 |
| A4 | 37.5 | 10 | 2.7 | 6 |
| A5 | -1 | 0 | 0 | 0 |
| A6 | 22 | 24.8 | 1 | 7 |
| A7 | 25 | 18 | 0.3 | 6 |
| A8 | 5.56 | 17 | 0.5 | 1 |
| A9 | 31.91 | 32 | 3 | 15 |
| A10 | 0 | 19 | 0.8 | 0 |
>TRINITY_DN91552_c0_g2_i2 from sample A4 / Example spliced isoformAGGGAATACTAGATATTTGCATTAGGCACTATATGTAAAGACTGTCTGAACGCATATCGTTTTATTTATGATGTGAAGGGCATTGTTCTGCATCTCCTTTGTTCTTTTCTGCATGTACTTACACTTGTTTTTCCATTGATCTTCTTAGTGGGGAAGAGCCTACTGTGTGAGAGGAGGGCCAGAGAAGGAAAAATTGGCTA
TGGAGGTGAGATAAAGGGGGAGGTGCACTGTTTTGTTTAGCATGGCTTTTTTTTGTCAATGTATTGGTGAAAGGCTGATTGATTTTAATTTAACTATGTGATGTTCAGTATCTGGAAAAGAGGGAATGTGAATATGATATCAAGGGCTCTGTAGATTTTTACACTGAGGAAGGAGAATCTGCAACCCCATTTCTGACTGG
AGTTCTATTATTCTTATCTACTCCAAACAATCGCATAAACAAGTACTACCTAGGCCCAGCTCCACTAGAAGAAATGGCAAGACAAATAGCAAAAGCTTCTGGTCCATGTGGGAATAACCGTGACTATCTTTTCAAGTTGGAAATAACCATGGCTAGCATTGGTCATGAAGACCAGGCGGTGATCAAACTTGCAAATGAAG
TGAGGAGAATTCTTGGAGGCATTCATGATGTTCAATCTACCACTGTGATTACTACTAACCTTGGGGTTTTTCTACCCAGAAAAGAAGAGCGGCTAATTATAGCGTGAGATATACCAATTCTTATGGTTAACCATTTTTAAAATGACCATGTTTTTCAGTACACACATCCCAATTCAGGAAGCATTGCTCTGAAATTTTTG
AGTCAAAATTCTATACAGGTTAAGTTGTAATAGGACCATATTCAATTGAGGATATTTGCTTATCCAGTAGCCCAGGGATAGTCATTACAAGTTCAAATTATGGTTTTGAACCATTGTCAAGTTAAGTTGTAATGGGACCATATTGCATTGAG
>TRINITY_DN91552_c0_g2_i4 from sample A4 / Example unspliced isoform:ATATAAAAGCTATTAGTTTTTGACCTCTTTTTTCACAAAATACCTGATTTTTAGAAGATTTGTCATTGCAGGAGGAAGGAGAATCTGCAACCCCATTTCTGACTGGAGTTCTATTGTGAGTCCCAGCAGCATTGATGTCAAGATTTTTGTTAGCTTGGTCTTATAACCTTGATATATGTTTCTATTGCATTTCAGACAAA
ATGATGAAAGCACTGAGTCATTTTTATTGCTTCTTGCAGATTCTTATCTACTCCAAACAATCGCATAAACAAGTACTACCTAGGCCCAGCTCCACTAGAAGAAATGGCAAGACAAATAGCAAAAGCTTCTGGTCCATGTGGGAATAACCGTGACTATCTTTTCAAGTTGGAAATAACCATGGCTAGCATTGgtgagtatc
tgtgaagttaccattgacatacccatccttcatatgtccatgctttgagaattcatgacttattattgcaatgcaacagGTCATGAAGACCAGGCGGTGATCAAACTTGCAAATGAAGTGAGGAGAATTCTTGGAGGCATTCATGATGTTCAATCTACCACTGTGATTACTACTAACCTTGGGGTTTTTCTACCCAGAAA
AGAAGAGCGGCTAATTATAGCGTGAGATATACCAATTCTTATGGTTAACCATTTTTAAAATGACCATGTTTTTCAGTACACACATCCCAATTCAGGAAGCATTGCTCTGAAATTTTTGAGTCAAAATTCTATACAGGTTAAGTTGTAATAGGACCATATTCAATTGAGGATATTTGCTTATCCAGTAGCCCAGGGATAGT
CATTACAAGTTCAAATTATGGTTTTGAACCATTGTCAAGTTAAGTTGTAATGGGACCATATTGCATTGAG
Intron 3 GTAAGAAAAG ... ATCTTCTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 100 | 0 | 0 | 2 |
| A2 | 22.22 | 7 | 0 | 2 |
| A3 | 0 | 5 | 0 | 0 |
| A4 | 93.33 | 1 | 0 | 14 |
| A5 | 42.86 | 4 | 0 | 3 |
| A6 | 8.33 | 11 | 0 | 1 |
| A7 | 8.11 | 34 | 0 | 3 |
| A8 | 18.18 | 9 | 0 | 2 |
| A9 | 12.12 | 29 | 0 | 4 |
| A10 | 20 | 16 | 0 | 4 |
>TRINITY_DN39740_c0_g1_i1 from sample A9 / Example spliced isoformCGAGTTATGGACTATTCACATCACATGAAGATAATGTGAATGCTGGAACAATCTACAACATACTTGGCTGCCATCTCGACGCGAAATTAATGGAAATTTTTTATTGATGTGAGCAGAAATCGGCCTATAAAAACGAAGCTTTGGAGGTCACACAGATATCGGCCCTGTAATCCAATACCCCAACCACTGGGAGTGTTGGA
TATCTTCCCACAGAATTTTTTTGTGAAGTTGCCAGGTTTTGTCTGTAGACGATATTCTGGGGGGTATTGTTCATTTCCAATTTTCATTCTTCTTATGCTGTCAGTCAGATCTACAGCTGCAATTTTGTAGCTCAAACTGCATTGATCTTACCGGTTTGGATTTAGCTTTTTTATATTTCTCAGTTGGGTTCCACTGATTT
GCCTGGCATTTTCATCTTTTGATTTCTGCTGAACCACCCAATTGCAAATTCATTCATTCATTGCGCTGGAACATTCATCATCATTTGATTTGTGCTTTGTTCTGTGGGCTCAGGGGATATTCCGAGGGGCATTGTTCATTTTTAATTTTCATTCTTCTTAAGTTGTCAGTCAGATCTGCAGCTGCAATTTTACAGCTCAA
ACTGCATACAGCTTACCAGTTTGGAATTAGTTTTTTCATTTTTCTCAGTTGGGTTCGGCTGATTTGCCGGGCATCTTGAGCTCTTGATTTCTGCTGAACCACAGTTGTGCAGTTCAAAGTGGTCTGTTGAGGAAGAAAACAAGTCTTAACTGTATAATTTCTGATTCTTAAGGATGGTGCTGTGGGTTTTTGGCTATGGG
TCCTTAATATGGAATCCAGGCTTTCAGGTGGACGAAAATATCCTTGGATATATCAAGGGCTACCGAAGAGTTTTTGATTTAGCTTGTACTGACCACTGTGGGACTCCGCAGTTTCCGGCTAGGACCTTAACACTGGAAGCACAGGAGGGAGCCATCTGTTGGGGAAGAGCCTACTGTGTGAGAGGAGGGCCAGAGAAGGA
AAAATTGGCTATGGAGTATCTGGAAAAGAGGGAATGTGAATATGATATCAAGGGCTCTGTAGATTTTTACACTGAGGAAGGAGAATCTGCAACCCCATTTCTGACTGGAGTTCTATTATTCTTATCTACTCCAAACAATCGCATAAACAAGTACTACCTAGGCCCAGCTCCACTAGAAGAAATGGCAAGACAAATAGCAA
AAGCTTCTGGTCCATGTGGGAATAACCGTGACTATCTTTTCAAGTTGGAAATAACCATGGCTAGCATTGGTCATGAAGACCAGGCGGTGATCAAACTTGCAAATGAAGTGAGGAGAATTCTTGGAGGCATTCATGATGTTCAATCTACCACTGTGATTACTACTAACCTTGGGGTTTTTCTACCCAGAAAAGAAGAGCGG
CTAATTATAGCGTGAGATATACCAATTCTTATGGTTAACCATTTTTAAAATGACCATGTTTTTCAGTACACACATCCCAATTCAGGAAGCATTGCTCTGAAATTTTTGAGTCAAAATTCTATACAGGTTAAGTTGTAATAGGACCATATTCAATTGAGGATATTTGCTTATCCAGTAGCCCAGGGATAGTCATTACAAGT
TCAAATTATGGTTTTGAACCATTGTCAAGTTAAGTTGTAATGGGACCATATTGCATTGAGGATATGTTCTAATTGAGTTACCCAGTTACCCAAGGATAGCTGGTTGGATTTTTAAAGTTTTCCAAAACTTCTATTTTACGAAAAGATTTTTTTATCGAGTAACCAAGTTACCCAAGGATAGCTTGTTAGATTTTTACATT
TTTTGAAAAATTCTTTTTACAGAAGACGAGTGAATTATTTTTTAGAACTCAC
>TRINITY_DN39740_c0_g1_i3 from sample A9 / Example unspliced isoform:AAGCACAGGAGGGAGCCATCTGTgtaagaaaagatactttccttagactggcatatatattcagagtatataccatatacattgcagggaatactagatatttgcattaggcactatatgtaaagactgtctgaacgcatatcgttttatttatgatgtgaagggcattgttctgcatctcctttgttcttttctgcatg
tacttacacttgtttttccattgatcttcttagTGGGGAAGAGCCTACTGTGTGAGAGGAGGGCCAGAGAAGGAAAAATTGGCTATGGAGTATCTGGAAAAGAGGGAATGTGAATATGATATCAAGGGCTCTGTAGATTTTTACACTGAGGAAGGAGAATCTGCAACCCCATTTCTGACTGGAGTTCTATTATTCTTATC
TACTCCAAACAATCGCATAAACAAGTACTACCTAGGCCCAGCTCCACTAGAAGAAATGGCAAGACAAATAGCAAAAGCTTCTGGTCCATGTGGGAATAACCGTGACTATCTTTTCAAGTTGGAAATAACCATGGCTAGCATTGGTCATGAAGACCAGGCGGTGATCAAACTTGCAAATGAAGTGAGGAGAATTCTTGGAG
GCATTCATGATGTTCAATCTACCACTGTGATTACTACTAACCTTGGGGTTTTTCTACCCAGAAAAGAAGAGCGGCTAATTATAGCGTGAGATATACCAATTCTTATGGTTAACCATTTTTAAAATGACCATGTTTTTCAGTACACACATCCCAATTCAGGAAGCATTGCTCTGAAATTTTTGAGTCAAAATTCTATACAG
GTTAAGTTGTAATAGGACCATATTCAATTGAGGATATTTGCTTATCCAGTAGCCCAGGGATAGTCATTACAAGTTCAAATTATGGTTTTGAACCATTGTCAAGTTAAGTTGTAATGGGACCATATTGCATTGAGGATATGTTCTAATTGAGTTACCCAGTTACCCAAGGATAGCTGGTTGGATTTTTAAAGTTTTCCAAA
ACTTCTATTTTACGAAAAGATTTTTTTATCGAGTAACCAAGTTACCCAAGGATAGCTTGTTAGATTTTTACATTTTTTGAAAAATTCTTTTTACAGAAGACGAGTGAATTATTTTTTAGAACTCAC
Intron 4 GTGAGTCCCA ... CTTCTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 6.67 | 14 | 0 | 1 |
| A2 | 6.67 | 14 | 0 | 1 |
| A3 | 14.29 | 12 | 2 | 2 |
| A4 | 12.5 | 7 | 4 | 1 |
| A5 | 0 | 6 | 0 | 0 |
| A6 | 8.57 | 32 | 0 | 3 |
| A7 | 2.94 | 33 | 0 | 1 |
| A8 | 8.57 | 32 | 0 | 3 |
| A9 | 14.49 | 59 | 0 | 10 |
| A10 | 2.44 | 40 | 0 | 1 |
>TRINITY_DN91552_c0_g2_i2 from sample A4 / Example spliced isoformAGGGAATACTAGATATTTGCATTAGGCACTATATGTAAAGACTGTCTGAACGCATATCGTTTTATTTATGATGTGAAGGGCATTGTTCTGCATCTCCTTTGTTCTTTTCTGCATGTACTTACACTTGTTTTTCCATTGATCTTCTTAGTGGGGAAGAGCCTACTGTGTGAGAGGAGGGCCAGAGAAGGAAAAATTGGCTA
TGGAGGTGAGATAAAGGGGGAGGTGCACTGTTTTGTTTAGCATGGCTTTTTTTTGTCAATGTATTGGTGAAAGGCTGATTGATTTTAATTTAACTATGTGATGTTCAGTATCTGGAAAAGAGGGAATGTGAATATGATATCAAGGGCTCTGTAGATTTTTACACTGAGGAAGGAGAATCTGCAACCCCATTTCTGACTGG
AGTTCTATTATTCTTATCTACTCCAAACAATCGCATAAACAAGTACTACCTAGGCCCAGCTCCACTAGAAGAAATGGCAAGACAAATAGCAAAAGCTTCTGGTCCATGTGGGAATAACCGTGACTATCTTTTCAAGTTGGAAATAACCATGGCTAGCATTGGTCATGAAGACCAGGCGGTGATCAAACTTGCAAATGAAG
TGAGGAGAATTCTTGGAGGCATTCATGATGTTCAATCTACCACTGTGATTACTACTAACCTTGGGGTTTTTCTACCCAGAAAAGAAGAGCGGCTAATTATAGCGTGAGATATACCAATTCTTATGGTTAACCATTTTTAAAATGACCATGTTTTTCAGTACACACATCCCAATTCAGGAAGCATTGCTCTGAAATTTTTG
AGTCAAAATTCTATACAGGTTAAGTTGTAATAGGACCATATTCAATTGAGGATATTTGCTTATCCAGTAGCCCAGGGATAGTCATTACAAGTTCAAATTATGGTTTTGAACCATTGTCAAGTTAAGTTGTAATGGGACCATATTGCATTGAG
>TRINITY_DN91552_c0_g2_i4 from sample A4 / Example unspliced isoform:ATATAAAAGCTATTAGTTTTTGACCTCTTTTTTCACAAAATACCTGATTTTTAGAAGATTTGTCATTGCAGGAGGAAGGAGAATCTGCAACCCCATTTCTGACTGGAGTTCTATTgtgagtcccagcagcattgatgtcaagatttttgttagcttggtcttataaccttgatatatgtttctattgcatttcagacaaa
atgatgaaagcactgagtcatttttattgcttcttgcagATTCTTATCTACTCCAAACAATCGCATAAACAAGTACTACCTAGGCCCAGCTCCACTAGAAGAAATGGCAAGACAAATAGCAAAAGCTTCTGGTCCATGTGGGAATAACCGTGACTATCTTTTCAAGTTGGAAATAACCATGGCTAGCATTGGTGAGTATC
TGTGAAGTTACCATTGACATACCCATCCTTCATATGTCCATGCTTTGAGAATTCATGACTTATTATTGCAATGCAACAGGTCATGAAGACCAGGCGGTGATCAAACTTGCAAATGAAGTGAGGAGAATTCTTGGAGGCATTCATGATGTTCAATCTACCACTGTGATTACTACTAACCTTGGGGTTTTTCTACCCAGAAA
AGAAGAGCGGCTAATTATAGCGTGAGATATACCAATTCTTATGGTTAACCATTTTTAAAATGACCATGTTTTTCAGTACACACATCCCAATTCAGGAAGCATTGCTCTGAAATTTTTGAGTCAAAATTCTATACAGGTTAAGTTGTAATAGGACCATATTCAATTGAGGATATTTGCTTATCCAGTAGCCCAGGGATAGT
CATTACAAGTTCAAATTATGGTTTTGAACCATTGTCAAGTTAAGTTGTAATGGGACCATATTGCATTGAG
Intron 5 GTATGTACTG ... TTGTATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 0 | 6.8 | 0 | 1 |
| A2 | 0 | 5 | 0 | 0 |
| A3 | 0 | 5.2 | 0 | 0 |
| A4 | 32.57 | 6.4 | 3 | 0 |
| A5 | 0 | 1.4 | 0 | 0 |
| A6 | 5.35 | 18.4 | 1 | 0 |
| A7 | 0 | 11.4 | 0 | 0 |
| A8 | 0 | 22.6 | 0 | 0 |
| A9 | 0 | 40.2 | 0 | 0 |
| A10 | 0 | 25.6 | 0 | 0 |
>TRINITY_DN39740_c0_g1_i1 from sample A9 / Example spliced isoformCGAGTTATGGACTATTCACATCACATGAAGATAATGTGAATGCTGGAACAATCTACAACATACTTGGCTGCCATCTCGACGCGAAATTAATGGAAATTTTTTATTGATGTGAGCAGAAATCGGCCTATAAAAACGAAGCTTTGGAGGTCACACAGATATCGGCCCTGTAATCCAATACCCCAACCACTGGGAGTGTTGGA
TATCTTCCCACAGAATTTTTTTGTGAAGTTGCCAGGTTTTGTCTGTAGACGATATTCTGGGGGGTATTGTTCATTTCCAATTTTCATTCTTCTTATGCTGTCAGTCAGATCTACAGCTGCAATTTTGTAGCTCAAACTGCATTGATCTTACCGGTTTGGATTTAGCTTTTTTATATTTCTCAGTTGGGTTCCACTGATTT
GCCTGGCATTTTCATCTTTTGATTTCTGCTGAACCACCCAATTGCAAATTCATTCATTCATTGCGCTGGAACATTCATCATCATTTGATTTGTGCTTTGTTCTGTGGGCTCAGGGGATATTCCGAGGGGCATTGTTCATTTTTAATTTTCATTCTTCTTAAGTTGTCAGTCAGATCTGCAGCTGCAATTTTACAGCTCAA
ACTGCATACAGCTTACCAGTTTGGAATTAGTTTTTTCATTTTTCTCAGTTGGGTTCGGCTGATTTGCCGGGCATCTTGAGCTCTTGATTTCTGCTGAACCACAGTTGTGCAGTTCAAAGTGGTCTGTTGAGGAAGAAAACAAGTCTTAACTGTATAATTTCTGATTCTTAAGGATGGTGCTGTGGGTTTTTGGCTATGGG
TCCTTAATATGGAATCCAGGCTTTCAGGTGGACGAAAATATCCTTGGATATATCAAGGGCTACCGAAGAGTTTTTGATTTAGCTTGTACTGACCACTGTGGGACTCCGCAGTTTCCGGCTAGGACCTTAACACTGGAAGCACAGGAGGGAGCCATCTGTTGGGGAAGAGCCTACTGTGTGAGAGGAGGGCCAGAGAAGGA
AAAATTGGCTATGGAGTATCTGGAAAAGAGGGAATGTGAATATGATATCAAGGGCTCTGTAGATTTTTACACTGAGGAAGGAGAATCTGCAACCCCATTTCTGACTGGAGTTCTATTATTCTTATCTACTCCAAACAATCGCATAAACAAGTACTACCTAGGCCCAGCTCCACTAGAAGAAATGGCAAGACAAATAGCAA
AAGCTTCTGGTCCATGTGGGAATAACCGTGACTATCTTTTCAAGTTGGAAATAACCATGGCTAGCATTGGTCATGAAGACCAGGCGGTGATCAAACTTGCAAATGAAGTGAGGAGAATTCTTGGAGGCATTCATGATGTTCAATCTACCACTGTGATTACTACTAACCTTGGGGTTTTTCTACCCAGAAAAGAAGAGCGG
CTAATTATAGCGTGAGATATACCAATTCTTATGGTTAACCATTTTTAAAATGACCATGTTTTTCAGTACACACATCCCAATTCAGGAAGCATTGCTCTGAAATTTTTGAGTCAAAATTCTATACAGGTTAAGTTGTAATAGGACCATATTCAATTGAGGATATTTGCTTATCCAGTAGCCCAGGGATAGTCATTACAAGT
TCAAATTATGGTTTTGAACCATTGTCAAGTTAAGTTGTAATGGGACCATATTGCATTGAGGATATGTTCTAATTGAGTTACCCAGTTACCCAAGGATAGCTGGTTGGATTTTTAAAGTTTTCCAAAACTTCTATTTTACGAAAAGATTTTTTTATCGAGTAACCAAGTTACCCAAGGATAGCTTGTTAGATTTTTACATT
TTTTGAAAAATTCTTTTTACAGAAGACGAGTGAATTATTTTTTAGAACTCAC
>TRINITY_DN39740_c0_g1_i8 from sample A9 / Example unspliced isoform:GCTCCACTAGAAGAAATGGCAAGgtatgtactgttcatttttaaggaatttttagttatcacaatgagattaaaaagacatttttgttcaaacactagatgtctttaggctgatacatctatacttaacatatagattggcattatcttgtatgcagACAAATAGCAAAAGCTTCTGGTCCATGTGGGAATAACCGTGAC
TATCTTTTCAAGTTGGAAATAACCATGGCTAGCATTGGTGAGTATCTGTGAAGTTACCATTGACATACCCATCCTTCATATGTCCATGCTTTGAGAATTCATGACTTATTATTGCAATGCAACAGGTCATGAAGACCAGGCGGTGATCAAACTTGCAAATGAAGTGAGGAGAATTCTTGGAGGCATTCATGATGTTCAAT
CTACCACTGTGATTACTACTAACCTTGGGGTTTTTCTACCCAGAAAAGAAGAGCGGCTAATTATAGCGTGAGATATACCAATTCTTATGGTTAACCATTTTTAAAATGACCATGTTTTTCAGTACACACATCCCAATTCAGGAAGCATTGCTCTGAAATTTTTGAGTCAAAATTCTATACAGGTTAAGTTGTAATAGGAC
CATATTCAATTGAGGATATTTGCTTATCCAGTAGCCCAGGGATAGTCATTACAAGTTCAAATTATGGTTTTGAACCATTGTCAAGTTAAGTTGTAATGGGACCATATTGCATTGAGGATATGTTCTAATTGAGTTACCCAGTTACCCAAGGATAGCTGGTTGGATTTTTAAAGTTTTCCAAAACTTCTATTTTACGAAAA
GATTTTTTTATCGAGTAACCAAGTTACCCAAGGATAGCTTGTTAGATTTTTACATTTTTTGAAAAATTCTTTTTACAGAAGACGAGTGAATTATTTTTTAGAACTCAC
Intron 6 GTGAGATAAA ... TGATGTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 50 | 1 | 0 | 1 |
| A2 | 30.72 | 11.3 | 2 | 5 |
| A3 | 45 | 4 | 1 | 3 |
| A4 | 64.29 | 6 | 4 | 9 |
| A5 | 24.44 | 3.3 | 0 | 1 |
| A6 | 38.52 | 21 | 0 | 13 |
| A7 | 26.39 | 32 | 0 | 11 |
| A8 | 29.06 | 19.7 | 0 | 8 |
| A9 | 35.95 | 25 | 1 | 14 |
| A10 | 23.75 | 16.3 | 0 | 5 |
>TRINITY_DN39740_c0_g1_i1 from sample A9 / Example spliced isoformCGAGTTATGGACTATTCACATCACATGAAGATAATGTGAATGCTGGAACAATCTACAACATACTTGGCTGCCATCTCGACGCGAAATTAATGGAAATTTTTTATTGATGTGAGCAGAAATCGGCCTATAAAAACGAAGCTTTGGAGGTCACACAGATATCGGCCCTGTAATCCAATACCCCAACCACTGGGAGTGTTGGA
TATCTTCCCACAGAATTTTTTTGTGAAGTTGCCAGGTTTTGTCTGTAGACGATATTCTGGGGGGTATTGTTCATTTCCAATTTTCATTCTTCTTATGCTGTCAGTCAGATCTACAGCTGCAATTTTGTAGCTCAAACTGCATTGATCTTACCGGTTTGGATTTAGCTTTTTTATATTTCTCAGTTGGGTTCCACTGATTT
GCCTGGCATTTTCATCTTTTGATTTCTGCTGAACCACCCAATTGCAAATTCATTCATTCATTGCGCTGGAACATTCATCATCATTTGATTTGTGCTTTGTTCTGTGGGCTCAGGGGATATTCCGAGGGGCATTGTTCATTTTTAATTTTCATTCTTCTTAAGTTGTCAGTCAGATCTGCAGCTGCAATTTTACAGCTCAA
ACTGCATACAGCTTACCAGTTTGGAATTAGTTTTTTCATTTTTCTCAGTTGGGTTCGGCTGATTTGCCGGGCATCTTGAGCTCTTGATTTCTGCTGAACCACAGTTGTGCAGTTCAAAGTGGTCTGTTGAGGAAGAAAACAAGTCTTAACTGTATAATTTCTGATTCTTAAGGATGGTGCTGTGGGTTTTTGGCTATGGG
TCCTTAATATGGAATCCAGGCTTTCAGGTGGACGAAAATATCCTTGGATATATCAAGGGCTACCGAAGAGTTTTTGATTTAGCTTGTACTGACCACTGTGGGACTCCGCAGTTTCCGGCTAGGACCTTAACACTGGAAGCACAGGAGGGAGCCATCTGTTGGGGAAGAGCCTACTGTGTGAGAGGAGGGCCAGAGAAGGA
AAAATTGGCTATGGAGTATCTGGAAAAGAGGGAATGTGAATATGATATCAAGGGCTCTGTAGATTTTTACACTGAGGAAGGAGAATCTGCAACCCCATTTCTGACTGGAGTTCTATTATTCTTATCTACTCCAAACAATCGCATAAACAAGTACTACCTAGGCCCAGCTCCACTAGAAGAAATGGCAAGACAAATAGCAA
AAGCTTCTGGTCCATGTGGGAATAACCGTGACTATCTTTTCAAGTTGGAAATAACCATGGCTAGCATTGGTCATGAAGACCAGGCGGTGATCAAACTTGCAAATGAAGTGAGGAGAATTCTTGGAGGCATTCATGATGTTCAATCTACCACTGTGATTACTACTAACCTTGGGGTTTTTCTACCCAGAAAAGAAGAGCGG
CTAATTATAGCGTGAGATATACCAATTCTTATGGTTAACCATTTTTAAAATGACCATGTTTTTCAGTACACACATCCCAATTCAGGAAGCATTGCTCTGAAATTTTTGAGTCAAAATTCTATACAGGTTAAGTTGTAATAGGACCATATTCAATTGAGGATATTTGCTTATCCAGTAGCCCAGGGATAGTCATTACAAGT
TCAAATTATGGTTTTGAACCATTGTCAAGTTAAGTTGTAATGGGACCATATTGCATTGAGGATATGTTCTAATTGAGTTACCCAGTTACCCAAGGATAGCTGGTTGGATTTTTAAAGTTTTCCAAAACTTCTATTTTACGAAAAGATTTTTTTATCGAGTAACCAAGTTACCCAAGGATAGCTTGTTAGATTTTTACATT
TTTTGAAAAATTCTTTTTACAGAAGACGAGTGAATTATTTTTTAGAACTCAC
>TRINITY_DN39740_c0_g1_i6 from sample A9 / Example unspliced isoform:AGAAGGAAAAATTGGCTATGGAGgtgagataaagggggaggtgcactgttttgtttagcatggcttttttttgtcaatgtattggtgaaaggctgattgattttaatttaactatgtgatgttcagTATCTGGAAAAGAGGGAATGTGAATATGATATCAAGGGCTCTGTAGATTTTTACACTGAGGAAGGAGAATCTGC
AACCCCATTTCTGACTGGAGTTCTATTATTCTTATCTACTCCAAACAATCGCATAAACAAGTACTACCTAGGCCCAGCTCCACTAGAAGAAATGGCAAGACAAATAGCAAAAGCTTCTGGTCCATGTGGGAATAACCGTGACTATCTTTTCAAGTTGGAAATAACCATGGCTAGCATTGGTCATGAAGACCAGGCGGTGA
TCAAACTTGCAAATGAAGTGAGGAGAATTCTTGGAGGCATTCATGATGTTCAATCTACCACTGTGATTACTACTAACCTTGGGGTTTTTCTACCCAGAAAAGAAGAGCGGCTAATTATAGCGTGAGATATACCAATTCTTATGGTTAACCATTTTTAAAATGACCATGTTTTTCAGTACACACATCCCAATTCAGGAAGC
ATTGCTCTGAAATTTTTGAGTCAAAATTCTATACAGGTTAAGTTGTAATAGGACCATATTCAATTGAGGATATTTGCTTATCCAGTAGCCCAGGGATAGTCATTACAAGTTCAAATTATGGTTTTGAACCATTGTCAAGTTAAGTTGTAATGGGACCATATTGCATTGAGGATATGTTCTAATTGAGTTACCCAGTTACC
CAAGGATAGCTGGTTGGATTTTTAAAGTTTTCCAAAACTTCTATTTTACGAAAAGATTTTTTTATCGAGTAACCAAGTTACCCAAGGATAGCTTGTTAGATTTTTACATTTTTTGAAAAATTCTTTTTACAGAAGACGAGTGAATTATTTTTTAGAACTCAC