sp|B9FI63|ERA_ORYSJ ----> GTPase ERA-like, chloroplastic
Intron 1 GTATGCTTTG ... TGAAATTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 31.25 | 12.5 | 5 | 5 |
| A2 | 39.78 | 12 | 4 | 9 |
| A3 | 32.73 | 19 | 8 | 10 |
| A4 | 24.35 | 22.3 | 5 | 7 |
| A5 | 31.25 | 10 | 2 | 6 |
| A6 | 25.62 | 32.3 | 3 | 17 |
| A7 | 30.17 | 74.5 | 12 | 45 |
| A8 | 26.02 | 66.3 | 11 | 30 |
| A9 | 31.19 | 57 | 11 | 35 |
| A10 | 31.53 | 48.3 | 10 | 29 |
>TRINITY_DN105998_c0_g1_i6 from sample A3 / Example spliced isoformGGCATTGCACTGTGAAAGGTTTAAATAGATGACATGGATGAAACAATGGATATCTTTGAATTTGAACGGATAATTACGGAAGCAGCTCTTCATTCACGAACGGAGTGAGACGCTCCTTCATTCATTCATGGAGCTCACTGCGCAGCTTCACGTTAATGCTTCTGGAACATTCTCGAAGGATTATTTCTGCATTTTCCCCT
CATTGCAGTGGGCATCGTTGCATTCTTCGACAAAATGTAAACGGCAAATTTCAGTGACCAGACTCTGCAATTTTATGCACAGTGATAAAGATTTTGCCATCCCTCTTATAAATACGTCGAAAACAGAGACACGCAATAAAACTAGGGTTTCGCCTCATGCACAGCCTTCCGAGGATAGAGTCTCACTGTCCTTAAATGAC
AAGCCCGAAAGAATGTCGAATGTCAAGGAGGAAGATGCAGATAACGCTGAAGGTTCCGATTATGGAGATCTCAGTGTTGGCCCCGATCACCGGAGCGGGTATGTAGCTGTAGTCGGCAAGCCAAATGTTGGAAAGAGTACACTTCTGAATCAGATGATTGGACAAAAGCTTTCCATAGTTACAGACAAACCCCAGACTAC
ACGGCATCGAATCCTTGGCTTGTGTTCTGCTCCTGATTATCAGATGGTTCTATATGATACACCTGGTGTGATTCAAAAAGAAATGCACAAACTAGATGCCATGATGATGAAGAATGTGCATTCTGCAACTGGCAATGCAGATTGTGTTTTGATAGTAGTTGATGTTTGCAAGGTTCCAGAGAAGGTAAATGACCTGTTTG
AAGGAGATGGAGTTGAGCTCAGCTATATTGCTCGTCCGACATCCAAATATTTTATTGAGATTGAAATTGTTGTTGAGAAAGAAGCTCAAAAGATCATTCTAATCGGAAAAGAAGGGAAGGCACTTAAGTTGTTAGCTACAGCTGCTCGCCTTGACATTGAGGACTTCATACAGAAGCAAGTATATTTGGAGGTATACTTT
TCTGTTGCGATTTGATACGAATCCCTTGAGATTTTGTGCATATAAACAAAAAACAT
>TRINITY_DN105998_c0_g1_i1 from sample A3 / Example unspliced isoform:GGCATTGCACTGTGAAAGGTTTAAATAGATGACATGGATGAAACAATGGATATCTTTGAATTTGAACGGATAATTACGGAAGCAGCTCTTCATTCACGAACGGAGTGAGACGCTCCTTCATTCATTCATGGAGCTCACTGCGCAGCTTCACGTTAATGCTTCTGGAACATTCTCGAAGGATTATTTCTGCATTTTCCCCT
CATTGCAGTGGGCATCGTTGCATTCTTCGACAAAATGTAAACGGCAAATTTCAGTGACCAGACTCTGCAATTTTATGCACAGTGATAAAGATTTTGCCATCCCTCTTATAAATACGTCGAAAACAGAGACACGCAATAAAACTAGGGTTTCGCCTCATGCACAGCCTTCCGAGGATAGAGTCTCACTGTCCTTAAATGAC
AAGCCCGAAAGAATGTCGAATGTCAAGGAGGAAGATGCAGATAACGCTGAAGGTTCCGATTATGGAGATCTCAGTGTTGGCCCCGATCACCGGAGCGGGTATGTAGCTGTAGTCGGCAAGCCAAATGTTGGAAAGAGTACACTTCTGAATCAGATGATTGGACAAAAGCTTTCCATAGTTACAGACAAACCCCAGACTAC
ACGGCATCGAATCCTTGGCTTGTGTTCTGCTCCTGATTATCAGATGGTTCTATATGATACACCTGGTGTGATTCAAAAAGAAATGCACAAACTAGATGCCATGATGATGAAGAATGTGCATTCTGCAACTGGCAATGCAGATTGTGTTTTGATAGTAGTTGATGTTTGCAAGGTTCCAGAGAAGgtatgctttgattata
tttattagaaagtgaaaagaaactgtatatttattttttcattgactgtagtgtttgaaattcagGTAAATGACCTGTTTGAAGGAGATGGAGTTGAGCTCAAGGAGAAACCACCGACATTGCTGGTATTAAACAAAAAGGACCTGATCAAGCCTGGGGAAATTGCAAAGAGAATGGAGTGGTATGAAGAGTTTGGTGGA
GCAGATCATATTCTGCCCATAAGCGCCAAATATGGACATGGGGTAGAGGATGTAAAGAATTGGATTGTTTCCAAGCTACCATACGGGCCTGCATATTATCCTAAGGACATCATCAGTGAGCATCCAGAGAGATTTTTTGTTGCTGAGATAGTTCGTGAAAAAGTTTTCATGCAATATCGCCAAGAAATTCCATATGCATG
CCAGGTCAATGTGGTCAGCTATATTGCTCGTCCGACATCCAAATATTTTATTGAGATTGAAATTGTTGTTGAGAAAGAAGCTCAAAAGATCATTCTAATCGGAAAAGAAGGGAAGGCACTTAAGTTGTTAGCTACAGCTGCTCGCCTTGACATTGAGGACTTCATACAGAAGCAAGTATATTTGGAGATCAAAGTCAAAG
TCAAACCAAATTGGCGCCAGAATGTAGATTTGCTGAAGCGATTCGGATATAGTGGAGCAATCAGGCCTTATTGATCAATTTTCCCATAATTTTGTAATTTGTACATATAAATTTTGTAAAATTTTGGGATTTCATTTGAGAGATGGATGACTCAATTGAAAGAGGTTTATAACCAAACAATTTTTAAATGTAGTTTTTAT
GTTAATTTTCAAGCCAATCCATCTCAAGGATAACCAAAATAGAATCTGAATCTATATGATATGTGAACACGATTGAATATGTGCTCCATGGTTGTAATTCTTTCGATTGTTACAACAAATTGTAG
Intron 2 GTGAACATTG ... GTGATTGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 33.33 | 27 | 15 | 12 |
| A2 | 24.14 | 33 | 7 | 14 |
| A3 | 25.81 | 46 | 10 | 22 |
| A4 | 26.88 | 34 | 9 | 16 |
| A5 | 34.48 | 19 | 10 | 10 |
| A6 | 24.73 | 105 | 17 | 52 |
| A7 | 25 | 159 | 48 | 58 |
| A8 | 21.99 | 133 | 32 | 43 |
| A9 | 23.76 | 138 | 31 | 55 |
| A10 | 24.52 | 137 | 28 | 61 |
>TRINITY_DN100105_c0_g1_i2 from sample A5 / Example spliced isoformCATGGATGAAACAATGGATATCTTTGAATTTGAACGGATAATTACGGAAGCAGCTCTTCATTCACGAAAGGAGTGAGACGCTCCTTCATTCATTCATGGAGCTCACTGCGCAGCTTCACGTTAATGCTTCTGGAACATTCTCGAAGGATTATTTCTGCATTTTCCCCTCATTGCAGTGGGCATCGTTGCATTCTTCGACA
AAATGTAAACGGCAAATTTCAGTGACCAGACTCTGCAATTTTATGCACAGTGATAAAGATTTTGCCATCCCTCTTATAAATACGTCGAAAACAGAGACACGCAATAAAACTAGGGTTTCGCCTCATGCACAGCCTTCCGAGGATAGAGTCTCACTGTCCTTAAATGACAAGCCCGAAAGAATGTCGAATGTCAAGGAGGA
AGATGCAGATAACGCTGAAGGTTCCGATTATGGAGATCTCAGTGTTGGCCCCGATCACCGGAGCGGGTATGTAGCTGTAGTCGGCAAGCCAAATGTTGGAAAGAGTACACTTCTGAATCAGATGATTGGACAAAAGCTTTCCATAGTTACAGACAAACCCCAGACTACACGGCATCGAATCCTTGGCTTGTGTTCTGCTC
CTGATTATCAGATGGTTCTATATGATACACCTGGTGTGATTCAAAAAGAAATGCACAAACTAGATGCCATGATGATGAAGAATGTGCATTCTGCAACTGGCAATGCAGATTGTGTTTTGATAGTAGTTGATGTTTGCAAGGTTCCAGAGAAGGTAAATGACCTGTTTGAAGGAGATGGAGTTGAGCTCAAGGAGAAACCA
CCGACATTGCTGGTATTAAACAAAAAGGACCTGATCAAGCCTGGGGAAATTGCAAAGAGAATGGAGTGGTATGAAGAGTTTGGTGGAGCAGATCATATTCTGCCCATAAGCGCCAAATATGGACATGGGGTAGAGGATGTAAAGAATTGGATTGTTTCCAAGCTACCATACGGGCCTGCATATTATCCTAAGGACATCAT
CAGTGAGCATCCAGAGAGATTTTTTGTTGCTGAGATAGTTCGTGAAAAAGTTTTCATGCAATATCGCCAAGAAATTCCATATGCATGCCAGGTCAATGTGGTCAGCTATATTGCTCGTCCGACATCCAAATATTTTATTGAGATTGAAATTGTTGTTGAGAAAGAAGCTCAAAAGATCATTCTAATCGGAAAAGAAGGGA
AGGCACTTAAGTTGTTAGCTACAGCTGCTCGCCTTGACATTGAGGACTTCATACAGAAGCAAGTATATTTGGAGATCAAAGTCAAAGTCAAACCAAATTGGCGCCAGAATGTAGATTTGCTGAAGCGATTCGGATATAGTGGAGCAATCAGGCCTTATTGATCAATTTTCCCATAATTTTGTAATTTGTACATATAAATT
TTGTAAAATTTTGGGATTTCATTTGAGAGATGGATGACTCAATTGAAAGAGGTTTATAACCAAACAATTTTTAAATGTAGTTTTTATGTTAATTTTCAAGCCAATCCATCTCAAGGATAACCAAAATAGAATCTGAATCTAT
>TRINITY_DN100105_c0_g1_i1 from sample A5 / Example unspliced isoform:CATGGATGAAACAATGGATATCTTTGAATTTGAACGGATAATTACGGAAGCAGCTCTTCATTCACGAAAGGAGTGAGACGCTCCTTCATTCATTCATGGAGCTCACTGCGCAGCTTCACGTTAATGCTTCTGGAACATTCTCGAAGGATTATTTCTGCATTTTCCCCTCATTGCAGTGGGCATCGTTGCATTCTTCGACA
AAATGTAAACGGCAAATTTCAGTGACCAGACTCTGCAATTTTATGCACAGTGATAAAGATTTTGCCATCCCTCTTATAAATACGTCGAAAACAGAGACACGCAATAAAACTAGGGTTTCGCCTCATGCACAGCCTTCCGAGGATAGAGTCTCACTGTCCTTAAATGACAAGCCCGAAAGAATGTCGAATGTCAAGGAGGA
AGATGCAGATAACGCTGAAGGTTCCGATTATGGAGATCTCAGTGTTGGCCCCGATCACCGGAGCGGGTATGTAGCTGTAGTCGGCAAGCCAAATGTTGGAAAGAGTACACTTCTGAATCAGATGATTGGACAAAAGCTTTCCATAGTTACAGACAAACCCCAGACTACACGGCATCGAATCCTTGGCTTGTGTTCTGCTC
CTGATTATCAGATGGTTCTATATGATACACCTGGTGTGATTCAAAAAGAAATGCACAAACTAGATGCCATGATGATGAAGAATGTGCATTCTGCAACTGGCAATGCAGATTGTGTTTTGATAGTAGTTGATGTTTGCAAGGTTCCAGAGAAGGTAAATGACCTGTTTGAAGGAGATGGAGTTGAGCTCAAGGAGAAACCA
CCGACATTGCTGGTATTAAACAAAAAGGACCTGATCAAGCCTGGGGAAATTGCAAAGAGAATGGAGgtgaacattgatggtggcatagatatcatgattgatttcacataatgagtaattgtataggcttatatctcaaaatgtgaacatgcttaagccttagggtggttgatgcagtctgtgtttatacatatactgta
ctcattttggatttctgagacacagttatcgctacattccactcatactgtgattgtagTGGTATGAAGAGTTTGGTGGAGCAGATCATATTCTGCCCATAAGTGCCAAATATGGAAATGGGGTAGAGGATGTAAAGAATTGGATTGTTTCCAAGCTACCATACGGGCCTGCATATTATCCTAAGGACATCATCAGTGAG
CATCCAGAGAGATTTTTTGTTGCTGAGATAGTTCGTGAAAAAGTTTTCATGCAATATCGCCAAGAAATTCCATATGCATGCCAGGTCAATGTGGTCAGCTATATTGCTCGTCCGACATCCAAATATTTTATTGAGATTGAAATTGTTGTTGAGAAAGAAGCTCAAAAGATCATTCTAATCGGAAAAGAAGGGAAGGCACT
TAAGTTGTTAGCTACAGCTGCTCGCCTTGACATTGAGGACTTCATACAGAAGCAAGTATATTTGGAGATCAAAGTCAAAGTCAAACCAAATTGGCGCCAGAATGTAGATTTGCTGAAGCGATTCGGATATAGTGGAGCAATCAGGCCTTATTGATCAATTTTCCCATAATTTTGTAATTTGTACATATAAATTTTGTAAA
ATTTTGGGATTTCATTTGAGAGATGGATGACTCAATTGAAAGAGGTTTATAACCAAACAATTTTTAAATGTAGTTTTTATGTTAATTTTCAAGCCAATCCATCTCAAGGATAACCAAAATAGAATCTGAATCTAT