sp|Q9LKA5|MORF8_ARATH ----> Multiple organellar RNA editing factor 8, chloroplastic/mitochondrial

Intron 1 GTATGTCGTT ... TGTTTAACAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	13.58	280	14	44
A2	12.8	218	5	32
A3	10.94	342	8	42
A4	12.28	200	22	28
A5	14.53	147	8	25
A6	10.45	2364	51	276
A7	12.02	1567	43	214
A8	11.4	1057	21	136
A9	10.64	1411	40	168
A10	9.16	1229	52	124

>TRINITY_DN98230_c0_g1_i2 from sample A4 / Example spliced isoform

TTAAACCCTTGGCTATAAACCCGCGTTCCACTTCTTAGGGTTTTACAACCACTCGCAGTTCTGTTATCCCCGTAGCTTGATTCGCTTATTCGTGGTCTCTACTGTCTACATTTTATCCTTCTGAAACTTTTGAAAACAATGATGATGCTGGGAAGGGCTCTTCTTCTGAGGCCAAGCCTCGGTATCTCTTCTAACAGAGG
AGCTGCATTCTTTACGACAAGGGCTGCTCTTCAGAGTGCATTCAATGGCAGAGTCTCGACCGTGGGGTTTCGCGGTGGGAGATTTCTCGGAGCGGTTTCGATCCCAAGAACTCCGTCTTTTGTCCTGCACAACACGCGGTCCTTTGCGTCTAATCCCACAACTTCGTCAATGACGGATCCTTCACCGAACTGGAGCAATC
GGCCACCGAAGGAGACCATTCTGCTGGACGGCTGCGATTATGAGCACTGGCTCATTGTCATGGAGCCTCCGGAGGGTAACCCTACGAGGGATGAAATCATTGATAGCTATATTAAGACCCTCGCCCAGGTCGTTGGAAGTGAGGAGGAAGCAAGGATGAAGATCTATTCGGTCTCTACAAAGCACTACTTTGCATTTGGC
TGCCTAGTATCAGAAGAGCTGTCTTACAAGCTCAAGCCCATGGAGAATGTCCGCTGGGTGCTCCCTGATTCCTACCTGGACCCTCGATCTAAGTCATATGGAGGGGAACCTTTCATTAATGGACAAGCGGTTCCCTATGATCCCAAGTACCATGAAGACTGGGTAAGGAACAATGCACGATGCAATGAAAGACGCTCCAA
TGATAGACCACGAAACTTTGACCGATCAAGGAATTTTGAAAGGCGAAGAGAAATGCAGCAGCAAGCAAGGCAGAATTACCAGCGTCCTCCACCTCCCCCTTCCTCTGCAGCAGCAGATGGCAATGCACAACCTGCACCATCTACTCAGGGTCGTTGAAAATGTGAACTTTGGGTCAGCCAATGTCTCTAGGTACTTGGAT
GATTATTCAGGGCGAATTTTGGACGAATTGGCATAAATTCTTCTCTATTTTTGGCTTATATAGTAAATACGTCTAGGGTGGGCTCAAAGCACTAGAGCAGGATATTTCTAGATGGCCTATAACTGAAAAAATCAGAAGTAGGATAGGTGTGTAGGTAGTGTGTGTTTGTGTAGAAAACTTCTTTCTCATCGATGTGGTTT
TCTGTCCCTACTGTAGGGCAGCCTAAACTACTTAAATGTAAAATATCTGGAAAACAGTTTTTGGGTTTTTGAATTTTATGTGAATGGTAGCTATAATTGGAAGGCAGTACTCTCCATATGTAGTAGGCAGTGTGTGTTTGTCTAGAAAACTTCTTTCTCATCGATGTGGTTTTCTGTCCCTACTGTAGGGCATCCTAAAC
TACTTAAATGTAAAATATCTGGAAAACAGTTTTTGGGTTTTTGAATTTTATGTGAATGGTAGCTATAATTGGAAGGCAGTACTCTCCATATGTAGTAGGCAGTGTGTGTTTGTCTAGAAAACTTCTTTCTCATCGATGTGGTTTTCTGTCCCTACTGTAGGGCATCCTAAACTACTTAAATATAAAATATCTGGAAAACA
GTTTT

>TRINITY_DN98230_c0_g1_i3 from sample A4 / Example unspliced isoform:

TTAAACCCTTGGCTATAAACCCGCGTTCCACTTCTTAGGGTTTTACAACCACTCGCAGTTCTGTTATCCCCGTAGCTTGATTCGCTTATTCGTGGTCTCTACTGTCTACATTTTATCCTTCTGAAACTTTTGAAAACAATGATGATGCTGGGAAGGGCTCTTCTTCTGAGGCCAAGCCTCGGTATCTCTTCTAACAGAGG
AGCTGCATTCTTTACGACAAGGGCTGCTCTTCAGAGTGCATTCAATGGCAGAGTCTCGACCGTGGGGTTTCGCGGTGGGAGATTTCTCGGAGCGGTTTCGATCCCAAGAACTCCGTCTTTTGTCCTGCACAACACGCGGTCCTTTGCGTCTAATCCCACAACTTCGTCAATGACGGATCCTTCACCGAACTGGAGCAATC
GGCCACCGAAGGAGACCATTCTGCTGGACGGCTGCGATTATGAGCACTGGCTCATTGTCATGGAGCCTCCGGAGGGTAACCCTACGAGGGATGAAATCATTGATAGCTATATTAAGACCCTCGCCAAGGTCGTTGGAAGGTGAGGGTTTCGAGTCTCTCCACACGGTTTTCTTGGCTTCGTTTTGCACTTGTTTTCATGG
CGGATTTATCGAACGGTTACCTTTTTAAAAGTGTTTATTGGAGTGTCAAGGGGTTTATGTTTATTGGAGTGTCAAGGGGTTTATGGTTTTTGGATTCGAGGGTTAGAGGGCATTCGCGGATTTATGCATTTTGTTTCGGGGGTTTTAAGTATTTATGGGTTTAGGTTTTAAGGACTCAGCACTTTAGAAGTTGGATTTGT
GTATAATGAAATTGGGTTTGTTTTCTTTTTGGTTTTGCAGTGAGGAGGAAGCAAGGATGAAGATCTATTCGGTCTCTACAAAGCACTACTTTGCATTTGGCTGCCTAGTATCAGAAGAGCTGTCTTACAAGCTCAAGCgtatgtcgttcttttactgatattgttatgtttctctgtctatattgtaataatatctcttt
gtgttttaatgaactgtttatattgtttaacagCCATGGAGAATGTCCGCTGGGTGCTCCCTGATTCCTACCTGGACCCTCGATCTAAGTCATATGGAGGGGAACCTTTCATTAATGGACAAGCGGTTCCCTATGATCCCAAGTACCATGAAGACTGGGTAAGGAACAATGCACGATGCAATGAAAGACGCTCCAATGAT
AGACCACGAAACTTTGACCGATCAAGGAATTTTGAAAGGCGAAGAGAAATGCAGCAGCAAGCAAGGCAGAATTACCAGCGTCCTCCACCTCCCCCTTCCTCTGCAGCAGCAGATGGCAATGCACAACCTGCACCATCTACTCAGGGTCGTTGAAAATGTGAACTTTGGGTCAGCCAATGTCTCTAGGTACTTGGATGATT
ATTCAGGGCGAATTTTGGACGAATTGGCATAAATTCTTCTCTATTTTTGGCTTATATAGTAAATACGTCTAGGGTGGGCTCAAAGCACTAGAGCAGGATATTTCTAGATGGCCTATAACTGAAAAAATCAGAAGTAGGATAGGTGTGTAGGTAGTGTGTGTTTGTGTAGAAAACTTCTTTCTCATCGAT

Intron 2 GTATGAATCA ... GATTTTGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	6.12	184	12	2
A2	3.01	161	5	0
A3	0.4	246	1	0
A4	4.05	142	6	0
A5	3.33	116	4	2
A6	3.78	1731	68	1
A7	2.43	1123	28	0
A8	5.68	831	50	1
A9	4.79	1094	55	1
A10	4.65	902	44	0

>TRINITY_DN101775_c0_g1_i3 from sample A5 / Example spliced isoform

GAAAACTCCATATTGTTGGGCCGGACAACCGACTGTTTGTTTATAAACCCTTACCCCTCGGACCGTAGGGTTTTTGTCTGGTTTTCTCGGTTCTGTAATTGCCACTACCATATTATCCATCCATCTTCATCTTCTGCTTCTCAGACAGAATATTGAAAAAAATGAAAATGATGAATATGGGTAGGACTCTTCTTCGGATC
CCGAGCAGGCTTGGCCGCTCCACTAACAGCAAAGCGGCGCTTTTTACAACAAGGGCTGAGCCGCTTCAGACTGCCTTCCATGGCAGAGTAACATCCCTCGTCGAGTTTCGGAGTATGCGTTTTCTTGGAGCGGTTTCTATCCCGCAACTTCCTGCTCGTGCCCCATTAAGGTGTTTTTCGGCCATACCCACCAATTCGTC
GATGACGGATCCTTCTCCCAACTGGAGCAACCGCCCCCCCAAGGAGACGATTCTGCTAGATGGCTGCGATTACGAGCATTGGCTCATTGTCATGGAACCCCCGGAAGGCGAGCCCACCAGGGATGAAATTATCGATAGCTATATAAAGACTCTCGCTCAGATTGTAGGAAGCGAGGAGGAAGCAAGGATGAAGATTTATT
CTGTATCTACAAAACACTACTTTGCTTTTGGCTGCCTCGTATCGGAAGAGCTGTCTTACAAGATTAAGCCCCTGCCTAATGTCCGCTGGGTGCTCCCTGATTCCTACCTGGACCCCCGAACTAAGGACTACGGAGGGGAACCTTTCATTAATGGACAAGCGGTTCCCTATGATCCGAAATACCATGAAGATTGGGTAAGG
AACAATGCACGATGTAATGAAAGACGGTCCAATGATAGACCGCGAAACTTTGACCGATCAAGGAACTTTGAGAGGCGAAGAGAAATGCAGCAGCAAGCAAGGCAGAATTACCAGCGCCCTCCACCACCTCCACCAGCCCCTCGAGCAGCAGATAGCACTATGCCGCCTGCACGAAATACCCAGGGTTAAGTTGTTGAAAA
TAGACCACTAGGCCAGCATACCCATGCCGCATATTTACAACAGATTGACTACATTTATTCATTAACCTCAGAAGGAGATGCCATGTACTGCACTACTTGCTTTGCAGCACGAATATACATTACTAGAGTCGAATATTTATGGACGGTACATGACAGAAATAGCATAAATAGAGTAGGTGTCTAGGCAAGGCGTTTTTGTG
TCAAAGACTTGTTAAACAACAATGTGGTTTTTTGTCCATAATGCAGGGCATGCTAAACTACATGTATACATTATTTTGGATATTGTCTATGGCTAATGAATTTCTATGTGAACAGTGGCTTTAACTGGAAAACAATACTTTCTTTTATATATTGAGCTAAAATGAAG

>TRINITY_DN101775_c0_g1_i2 from sample A5 / Example unspliced isoform:

GAAAACTCCATATTGTTGGGCCGGACAACCGACTGTTTGTTTATAAACCCTTACCCCTCGGACCGTAGGGTTTTTGTCTGGTTTTCTCGGTTCTGTAATTGCCACTACCATATTATCCATCCATCTTCATCTTCTGCTTCTCAGACAGAATATTGAAAAAAATGAAAATGATGAATATGGGTAGGACTCTTCTTCGGATC
CCGAGCAGGCTTGGCCGCTCCACTAACAGCAAAGCGGCGCTTTTTACAACAAGGGCTGAGCCGCTTCAGACTGCCTTCCATGGCAGAGTAACATCCCTCGTCGAGTTTCGGAGTATGCGTTTTCTTGGAGCGGTTTCTATCCCGCAACTTCCTGCTCGTGCCCCATTAAGGTGTTTTTCGGCCATACCCACCAATTCGTC
GATGACGGATCCTTCTCCCAACTGGAGCAACCGCCCCCCCAAGGAGACGATTCTGCTAGATGGCTGCGATTACGAGCATTGGCTCATTGTCATGGAACCCCCGGAAGGCGAGCCCACCAGGGATGAAATTATCGATAGCTATATAAAGACTCTCGCTCAGATTGTAGGAAGCGAGGAGGAAGCAAGGATGAAGATTTATT
CTGTATCTACAAAACACTACTTTGCTTTTGGCTGCCTCGTATCGGAAGAGCTGTCTTACAAGATTAAGCgtatgaatcagttctcattaatctctattgattttgtaggccgtatcataattttgctttctgatggttgcacttgggggtttactgaggtttttgtatgattttgcagCCCTGCCTAATGTCCGCTGGGT
GCTCCCTGATTCCTACCTGGACCCCCGAACTAAGGACTACGGAGGTAAGGACTTTTTTGTCATGGAGTTCCAGCGGAGTCGTTGTATTGTGTTTTCCGGCCGTAGGATGGAATTCAATTGGTAGCCCTTTGATTTACTTAGTTTGAAACATTCATGCTATTGTTCAGGAT

Intron 3 GTTAAGTAAA ... GGTAATGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	25.69	188	1	65
A2	23.08	110	0	33
A3	19.42	195	1	47
A4	19.05	85	0	20
A5	21.43	99	0	27
A6	21.23	1666	2	449
A7	20.68	928	0	242
A8	21.79	1163	2	324
A9	21.04	1002	2	267
A10	20.39	699	0	179

>TRINITY_DN40093_c1_g2_i2 from sample A6 / Example spliced isoform

GCGGGCCTTAAACCCTTGGCTATAAACCCGCGTTCCACTTCTTAGGGTTTTACAACCACTCGCAGTTCTGTTATCCCCGTAGCTTGATTCGCTTATTCGTGGTCTCTACTGTCTACATTTTATCCTTCTGAAACTTTTGAAAACAATGATGATGCTGGGAAGGGCTCTTCTTCTGAGGCCAAGCCTCGGTATCTCTTCTA
ACAGAGGAGCTGCATTCTTTACGACAAGGGCTGCTCTTCAGAGTGCATTCAATGGCAGAGTCTCGACCGTGGGGTTTCGCGGCGGGAGATTTCTCGGAGCGGTTTCGATCCCAAGAACTCCGTCTTTTGTCCTGCACAACACGCGGTCCTTTGCGTCTAATCCCACAACTTCGTCAATGACGGATCCTTCACCGAACTGG
AGCAATCGGCCACCGAAGGAGACCATTCTGCTGGACGGCTGCGATTATGAGCACTGGCTCATTGTCATGGAGCCTCCGGAGGGTAACCCTACGAGGGATGAAATCATTGATAGCTATATTAAGACCCTCGCCCAGGTCGTTGGAAGTGAGGAGGAAGCAAGGATGAAGATCTATTCGGTCTCTACAAAGCACTACTTTGC
ATTTGGCTGCCTAGTATCAGAAGAGCTGTCTTACAAGCTCAAGCCCATGGAGAATGTCCGCTGGGTGCTCCCTGATTCCTACCTGGACCCTCGATCTAAGTCATATGGAGGGGAACCTTTCATTAATGGACAAGCGGTTCCCTATGATCCCAAGTACCATGAAGACTGGGTAAGGAACAATGCACGATGCAATGAAAGAC
GCTCCAATGATAGACCACGAAACTTTGACCGATCAAGGAATTTTGAAAGGCGAAGAGAAATGCAGCAGCAAGCAAGGCAGAATTACCAGCGTCCTCCACCTCCCCCTTCCTCTGCAGCAGCAGATGGCAATGCACAACCTGCACCATCTACTCAGGGTCGTTGAAAATGTGAACTTTGGGTCAGCCAATGTCTCTAGGTA
CTTGGATGATTATTCAGGGCGAATTTTGGACGAATTGGCATAAATTCTTCTCTATTTTTGGCTTATATAGTAAATACGTCTAGGGTGGGCTCAAAGCACTAGAGCAGGATATTTCTAGATGGCCTATAACTGAAAAAATCAGAAGTAGGATAGGTGTGTAGGTAGTGTGTGTTTGTGTAGAAAACTTCTTTCTCATCGAT
GTGGTTTTCTGTCCCTACTGTAGGGCAGCCTAAACTACTTAAATGTAAAATATCTGGAAAACAGTTTTTGGGTTTTTGAATTTTATGTGAATGGTAGCTATAATTGGAAGGCAGTACTCTCCATATGTAGTAGGCAGTGTGTGTTTGTCTAGAAAACTTCTTTCTCATCGATGTGGTTTTCTGTCCCTACTGTAGGGCAT
CCTAAACTACTTAAATATAAAATATCTGGAAAACAGTTTTTGGGTTTTTGAATTTTATGTGAATGGCAGCTATAATTGGAAGGCAGTACTCTCCATATGTAGTAGGCAGTGTGTGTTTGTCTAGAAAACTTCTTTCTCATCGATGTGGTTTTCTGTCCCTACTGTAGGGCATCCTAAACTACTTAAATATAAAATATCTG
GAAAACAGTTTTTGGGTTTTTGAATTTTATGTGAATGGTAGCTATAATTGGAAGGCAGTACTCTCCATATGTAGTAAGCAGTGTGTGTTTGTGTAGAAAACTTCTTTCTCATCGATGTGGTTTTCTGTCCCTACTGTAGGGCACCCTAAACTACTTAAATGTAAAATATCTGGAAAACGGTTTTTGGATTTTTGAATTTT
ATGTGAATGGCAGCTATAATTGGAAGGCAGTACTCTCCATATGTAGTTGGCTAATGTTTGGCAAAATCGCATTATTCATGCTGCTTGTGATCCCGAGCTTGTTTTATATTGGATATCAGGG

>TRINITY_DN40093_c1_g2_i1 from sample A6 / Example unspliced isoform:

AACCTGCACCATCTACTCAGGgttaagtaaattattcttctttccccataattaaaacataatttgatctcaagaagtaggcttattttatctgttgtcgctggtaatgcagGTCGTTGAAAATGTGAACTTTGGGTCAGCCAATGTCTCTAGGTACTTGGATGATTATTCAGGGCGAATTTTGGACGAATTGGCATAAA
TTCTTCTCTATTTTTGGCTTATATAGTAAATACGTCTAGGGTGGGCTCAAAGCACTAGAGCAGGATATTTCTAGATGGCCTATAACTGAAAAAATCAGAAGTAGGATAGGTGTGTAGGTAGTGTGTGTTTGTGTAGAAAACTTCTTTCTCATCGATGTGGTTTTCTGTCCCTACTGTAGGGCAGCCTAAACTACTTAAAT
GTAAAATATCTGGAAAACAGTTTTTGGGTTTTTGAATTTTATGTGAATGGTAGCTATAATTGGAAGGCAGTACTCTCCATATGTAGTAGGCAGTGTGTGTTTGTCTAGAAAACTTCTTTCTCATCGATGTGGTTTTCTGTCCCTACTGTAGGGCATCCTAAACTACTTAAATATAAAATATCTGGAAAACAGTTTTTGGG
TTTTTGAATTTTATGTGAATGGCAGCTATAATTGGAAGGCAGTACTCTCCATATGTAGTAGGCAGTGTGTGTTTGTCTAGAAAACTTCTTTCTCATCGATGTGGTTTTCTGTCCCTACTGTAGGGCATCCTAAACTACTTAAATATAAAATATCTGGAAAACAGTTTTTGGGTTTTTGAATTTTATGTGAATGGTAGCTA
TAATTGGAAGGCAGTACTCTCCATATGTAGTAAGCAGTGTGTGTTTGTGTAGAAAACTTCTTTCTCATCGATGTGGTTTTCTGTCCCTACTGTAGGGCACCCTAAACTACTTAAATGTAAAATATCTGGAAAACGGTTTTTGGATTTTTGAATTTTATGTGAATGGCAGCTATAATTGGAAGGCAGTACTCTCCATATGT
AGTTGGCTAATGTTTGGCAAAATCGCATTATTCATGCTGCTTGTGATCCCGAGCTTGTTTTATATTGGATATCAGGG