NA ----> NA
Intron 1 GTTCGTGCTT ... ATGAAACCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 32.76 | 25 | 12.3 | 0 |
| A2 | 30.09 | 24 | 10.7 | 5 |
| A3 | 25.88 | 28 | 10 | 2 |
| A4 | 15.38 | 11 | 2 | 2 |
| A5 | 81.11 | 1 | 4.3 | 4 |
| A6 | -1 | 0 | 0 | 0 |
| A7 | 0 | 4 | 0 | 0 |
| A8 | 51.43 | 3 | 3.3 | 0 |
| A9 | -1 | 0 | 0 | 0 |
| A10 | 20.83 | 11 | 3.3 | 0 |
>TRINITY_DN113924_c0_g1_i11 from sample A3 / Example spliced isoformGGGAGGGGAGTTTATGGAGAAATATTCATACTTATAAGAAGACCTAGCTTTACAATGTCCTCAACGCCTGGCCGACGGTGAAACACGACTGAATGATAGCATACTGGTTTTAAAAAAAATAATTTGGAGGAGCCCGGTGCATTTTATATTCACTTGTGGCTTCCCGCCAGTCCGCCATTATATTAACTCAATCCAATTGA
AGATGGAAATCGAAATGGACGGAGAAGAAGACGTGGATGAACTGTATGGAGATCTGTACGAACATCTTACAGATGGGAGGCAGGTGCCTAAGACATCGCTTTTAGAGATGGAGGAGAGGATGGATCAGCTCACCAAACAGGGAGAGGAGATGCACTTGAAAATCCAGACATTGCAGAAGCAGAACAATTCTTTACAAGAA
GAGAAGGATATCTTGATCTGTAATATTTCGAGCTTATTCAAGACTGCACAAATGGAGATTGGGAGAAAGAACAAACAAATTAATGAACTTCGACAAGAGATTTCCCAGCTGAAAATTCAGGAGCCATGTTCAAATTCTTTGATCCCAGCAACTGTGCAAATGATAGCCAAATCTGAAAAGTTGTTACATGACAAGCAATT
AAATGAAGTGCAAAATAAAAATTATAGAGAAACTAGACATGCAGGTGAAATGCAAGGGATAGCCAGGATCAGTCAAAATGATTCGAAAGGTATGAAAAACATATCAAGAGATGAAGCCACCCCTTACATAAGATCACTTGTATTGAATAATATTGAGAGAACTGTCCCATTTGCCAGGGATGCAAAGAGGCCAAAAACCA
TTGATGTTCAAGCAAGGACCTCTGAACATGTAAATGGTGCACAGAATTATGTTTCTCATAAAGGTCGACGTGTAAATGGAAAGGAAGAATGTAGTTTTGAGCATGATAGGTTGAGAGGATGTCAGTCACGTGAGAAACTGATTGAGCCGAAGATTGACAGTAGGAATGATCATCAGATAATGCACATGCAGAAGAAAGAT
AGTGTCAATCAAAATCCAATTAGGCACCGCAGTTCCCGAGGGAGTGTGGAAAGAAAAGCTGAGAAGTCTATATTAGGAAATCCTGCAATGAAATCAATAGGCGATTGTGACATTTTAAGTGGTGATGGTAACTGTATTCGTCCGAGAAACTCTGTTCTAAACAGGAAAGTCATTGATGCAGCTGATACCAGGAAACTAGA
TTCTTACAGTGAAGATCCATCTAGATGCAGAATACAGAAGAGGGATTATTTTGTTCATAGCAGGAATGACAAGAAACCATTCAGGAGTGAAGATAGTGAACAATCTGAAACACACAAGCTTTTAGGAAAGCAATACAAAAATGATTCTGGGGAAGATAAGAATTTTGGCAATGTGCAAGTCATAAATGGATTTGAGTCAA
GACAAGATCATGGAACAAGATCGTGGATGAACGAAGCATGGGCACCAGAACATGGAAACAAAGCTCACTTATCTGAGACTACAGGACCTGAAAGATTATCATTTATGTCAGATGAAACACATGAAGATTGCAGAGAAGAGGTGCAGACAAATGGAGAACAGAGGAGGAAGAGGTCAAAAGATAGTGAATTGCCAGAAATC
ATGGGTGCAGACAAGGGTGACATCTGGTCAAGTGATGCTGGAACACACTCACATGGAGTTGGCCATGTGCTACTTGACGATAGCTTGCAAAATACAACTGTTATTAAAGGTCAATTGATGCAAGCAAATGGCATCAAGAGTTCTATTTCATTACCAGAAGTAAAGCACACTGATAGTACAGTTCTTTCCTTTGGTAATGG
AGATGGTGCTGAGGCTGGGTTCAAGCTGCAATTAGGTGTGAATGAAACTTCAAAAGATTTAGGAATGTCAAGAGAATTGAATGCTGAGATGCCAAAGGAAGCAGGTGCAATTAACTTCGGAGCAGAGGAAATGAAGGATAGCTGTCAAGGACACCATGGAGAGTCCATGTCTGGGGACGCTAGAAAATTTCGAGTTTCCC
CTTTCAGAAGCAGGGAGAAACGACATAGCAAAAACATTTTGCAACGTGGGAAGGAAGTTATGCATGAGAAACGACATAGCAAAAACATTTTGCAACGTGGGAAGGAAGTTATGCATGAGAAATGCAGACAAGGGTGACATCTGGTCAAGTAATG
>TRINITY_DN113924_c0_g1_i1 from sample A3 / Example unspliced isoform:GCTTGCAATGTCTTTGTGTCTGTGTTGGTCAGATGGAGGAGAGGATGGATCAGCTCACCAAACAGGGAGAGGAGATGCACTTGAAAATCCAGACATTGCAGAAGCAGgttcgtgctttcatatcattctactatccaaaattctgtgacaatttaaagtcttcaatgccatttattagctgttgtcttcacgaaatgcca
aatagcgacagaaaaggaaggggaaaaagtcagaagacctgcaaaatcaacaaaaaaactaaaagataaagaaaatgaaaccagAACAATTCTTTACAAG
Intron 2 GTAAGTCTAT ... TCATTCGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 35.09 | 37 | 29 | 11 |
| A2 | 36.11 | 46 | 27 | 25 |
| A3 | 31.18 | 64 | 34 | 24 |
| A4 | 33.33 | 28 | 19 | 9 |
| A5 | 31.71 | 14 | 6 | 7 |
| A6 | 60 | 2 | 1 | 5 |
| A7 | 42.86 | 2 | 0 | 3 |
| A8 | 66.67 | 1 | 0 | 4 |
| A9 | 44.44 | 5 | 7 | 1 |
| A10 | 100 | 0 | 1 | 0 |
>TRINITY_DN117571_c0_g1_i2 from sample A1 / Example spliced isoformAAGAAGACCTAGCTTTACAATGTCCTCAACGCCTGGCCGACGGTGAAACACGACTGAATGATAGCATACTGGTTTTAAAAAAAATAATTTGGAGGAGCCCGGTGCATTTTATATTCACTTGTGGCTTCCCGCCAGTCCGCCATTATATTAACTCAATCCAATTGAAGATGGAAATCGAAATGGACGGAGAAGAAGACGTG
GATGAACTGTATGGAGATCTGTACGAACATCTTACAGATGGGAGGCAGGTGCCTAAGACATCGCTTTTAGAGATGGAGGAGAGGATGGATCAGCTCACCAAACAGGGAGAGGAGATGCACTTGAAAATCCAGACATTGCAGAAGCAGAACAATTCTTTACAAGAAGAGAAGGATATCTTGATCTGTAATATTTCGAGCTT
ATTCAAGACTGCACAAATGGAGATTGGGAGAAAGAACAAACAAATTAATGAACTTCGACAAGAGATTTCCCAGCTGAAAATTCAGGAGCCATGTTCAAATTCTTTGATCCCAGCAACTGTGCAAATGATAGCCAAATCTGAAAAGTTGTTACATGACAAGCAATTAAATGAAGTGCAAAATAAAAATTATAGAGAAACTA
GACATGCAGGTGAAATGCAAGGGATAGCCAGGATCAGTCAAAATGATTCGAAAGGTATGAAAAACATATCAAGAGATGAAGCCACCCCTTACATAAGATCACTTGTATTGAATAATATTGAGAGAACTGTCCCATTTGCCAGGGATGCAAAGAGGCCAAAAACCATTGATGTTCAAGCAAGGACCTCTGAACATGTAAAT
GGTGCACAGAATTATGTTTCTCATAAAGGTCGACGTGTAAATGGAAAGGAAGAATGTAGTTTTGAGCATGATAGGTTGAGAGGATGTCAGTCACGTGAGAAACTGATTGAGCCGAAGATTGACAGTAGGAATGATCATCAGATAATGCACATGCAGAAGAAAGATAGTGTCAATCAAAATCCAATTAGGCACCGCAGTTC
CCGAGGGAGTGTGGAAAGAAAAGCTGAGAAGTCTATATTAGGAAATCCTGCAATGAAATCAATAGGCGATTGTGACATTTTAAGTGGTGATGGTAACTGTATTCGTCCGAGAAACTCTGTTCTAAACAGGAAAGTCATTGATGCAGCTGATACCAGGAAACTAGATTCTTACAGTGAAGATCCATCTAGATGCAGAATAC
AGAAGAGGGATTATTTTGTTCATAGCAGGAATGACAAGAAACCATTCAGGAGTGAAGATAGTGAACAATCTGAAACACACAAGCTTTTAGGAAAGCAATACAAAAATGATTCTGGGGAAGATAAGAATTTTGGCAATGTGCAAGTCATAAATGGATTTGAGTCAAGACAAGATCATGGAACAAGATCGTGGATGAACGAA
GCATGGGCACCAGAACATGGAAACAAAGCTCACTTATCTGAGACTACAGGACCTGAAAGATTATCATTTATGTCAGATGAAACACATGAAGATTGCAGAGAGTGGAGGAGGAAGATGTCAAAAGATAGCAAATTGCCAGAAATTGTGGGTGCAGACATCTGGTCAAGTAATGATGGAACTTATCCACGTGAAGTTGGTCA
TGTGCTACTTGATGATATCCTTCAAAATACAACTGTTATTGAAGGTCAAGGCACACCAGCAAACGACATCAAGAGTTCTATTTCATTACGAGAAGTAAACCACACTGAGAGTCCAGTTTATTCCTTTGTCAATGGAGATGGTGCTGAGGCTGGGTTCAAGCTGCAATTAGGTGTGAATGAAACTTCAAAAGATTTAGTAA
TGTCAAGAGAATTAAATGCTGAGATGCCAAAGGAAGCAGGTGCAATTAACT
>TRINITY_DN117571_c0_g1_i11 from sample A1 / Example unspliced isoform:AAGAAGACCTAGCTTTACAATGTCCTCAACGCCTGGCCGACGGTGAAACACGACTGAATGATAGCATACTGGTTTTAAAAAAAATAATTTGGAGGAGCCCGGTGCATTTTATATTCACTTGTGGCTTCCCGCCAGTCCGCCATTATATTAACTCAATCCAATTGAgtaagtctattttgctttgggatgcgcggagtgct
ctaccacgcaggatcttcagattgcttctctggttaactttcatttataaatctgaatgaaggatgagcatttgaacgcgaaccagaagattaaccctcgctaactcattcattcgcagAGATGGAAATCGAAATGGACGGAGAAGAAGACGTGGATGAACTGTATGGAGATCTGTACGAACATCTTACAGATGGGAGGC
AGGTGCCTAAGACATCGCTTTTAGAGATGGAGGAGAGGATGGATCAGCTCACCAAACAGGGAGAGGAGATGCACTTGAAAATCCAGACATTGCAGAAGCAGAACAATTCTTTACAAGAAGAGAAGGATATCTTGATCTGTAATATTTCGAGCTTATTCAAGACTGCACAAATGGAGATTGGGAGAAAGAACAAACAAATT
AATGAACTTCGACAAGAGATTTCCCAGCTGAAAATTCAGGAGCCATGTTCAAATTCTTTGATCCCAGCAACTGTGCAAATGATAGCCAAATCTGAAAAGTTGTTACATGACAAGCAATTAAATGAAGTGCAAAATAAAAATTATAGAGAAACTAGACATGCAGGTGAAATGCAAGGGATAGCCAGGATCAGTCAAAATGA
TTCGAAAGGTATGAAAAACATATCAAGAGATGAAGCCACCCCTTACATAAGATCACTTGTATTGAATAATATTGAGAGAACTGTCCCATTTGCCAGGGATGCAAAGAGGCCAAAAACCATTGATGTTCAAGCAAGGACCTCTGAACATGTAAATGGTGCACAGAATTATGTTTCTCATAAAGGTCGACGTGTAAATGGAA
AGGAAGAATGTAGTTTTGAGCATGATAGGTTGAGAGGATGTCAGTCACGTGAGAAACTGATTGAGCCGAAGATTGACAGTAGGAATGATCATCAGATAATGCACATGCAGAAGAAAGATAGTGTCAATCAAAATCCAATTAGGCACCGCAGTTCCCGAGGGAGTGTGGAAAGAAAAGCTGAGAAGTCTATATTAGGAAAT
CCTGCAATGAAATCAATAGGCGATTGTGACATTTTAAGTGGTGATGGTAACTGTATTCGTCCGAGAAACTCTGTTCTAAACAGGAAAGTCATTGATGCAGCTGATACCAGGAAACTAGATTCTTACAGTGAAGATCCATCTAGATGCAGAATACAGAAGAGGGATTATTTTGTTCATAGCAGGAATGACAAGAAACCATT
CAGGAGTGAAGATAGTGAACAATCTGAAACACACAAGCTTTTAGGAAAGCAATACAAAAATGATTCTGGGGAAGATAAGAATTTTGGCAATGTGCAAGTCATAAATGGATTTGAGTCAAGACAAGATCATGGAACAAGATCGTGGATGAACGAAGCATGGGCACCAGAACATGGAAACAAAGCTCACTTATCTGAGACTA
CAGGACCTGAAAGATTATCATTTATGTCAGATGAAACACATGAAGATTGCAGAGAGTGGAGGAGGAAGATGTCAAAAGATAGCAAATTGCCAGAAATTGTGGGTGCAGACATCTGGTCAAGTAATGATGGAACTTATCCACGTGAAGTTGGTCATGTGCTACTTGATGATATCCTTCAAAATACAACTGTTATTGAAGGT
CAAGGCACACCAGCAAACGACATCAAGAGTTCTATTTCATTACGAGAAGTAAACCACACTGAGAGTCCAGTTTATTCCTTTGTCAATGGAGATGGTGCTGAGGCTGGGTTCAAGCTGCAATTAGGTGTGAATGAAACTTCAAAAGATTTAGTAATGTCAAGAGAATTAAATGCTGAGATGCCAAAGGAAGCAGGTGCAAT
TAACT
Intron 3 GTCGGGTTTT ... TTCACCGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 14.9 | 28.7 | 5 | 5 |
| A2 | 12.46 | 19.7 | 0 | 5 |
| A3 | 14.5 | 21 | 5 | 2 |
| A4 | 13.47 | 13.7 | 0 | 4 |
| A5 | -1 | 0 | 0 | 0 |
| A6 | -1 | 0 | 0 | 0 |
| A7 | 0 | 4 | 0 | 0 |
| A8 | 0 | 1 | 0 | 0 |
| A9 | -1 | 0 | 0 | 0 |
| A10 | 0 | 5 | 0 | 0 |
>TRINITY_DN117571_c0_g1_i4 from sample A1 / Example spliced isoformATTTGATTTACTAATATTTTATCCCTGCAAATGAAATATTTGTTTTAGAATTCAATACTGTTATTAGTCCAAAAGAGAAAAAACTTGCTTCACATTTTTGTTGTTCTTATATGCAACTTTATTCCAGCTTTCTATAAAATGAACCTTTGTAATTAATAAAATAGAACATTTCCTTTAAGGTATAAGAACATTAAATATTT
TTTGATTGCAAGCAAAATGGTTACATTCATTATACTGGAATGCAATATGAGAGGAAAGGTAGGAGGGATGTAGGAGTTTGTAATTGTTTCAATGTTATATTGATATAGATCGGGTTTTGTGCAGAACAATTCTTTACAAGAAGAGAAGGATATCTTGATCTGTAATATTTCGAGCTTATTCAAGACTGCACAAATGGAGA
TTGGGAGAAAGAACAAACAAATTAATGAACTTCGACAAGAGATTTCCCAGCTGAAAATTCAGGAGCCATGTTCAAATTCTTTGATCCCAGCAACTGTGCAAATGATAGCCAAATCTGAAAAGTTGTTACATGACAAGCAATTAAATGAAGTGCAAAATAAAAATTATAGAGAAACTAGACATGCAGGTGAAATGCAAGGG
ATAGCCAGGATCAGTCAAAATGATTCGAAAGGTATGAAAAACATATCAAGAGATGAAGCCACCCCTTACATAAGATCACTTGTATTGAATAATATTGAGAGAACTGTCCCATTTGCCAGGGATGCAAAGAGGCCAAAAACCATTGATGTTCAAGCAAGGACCTCTGAACATGTAAATGGTGCACAGAATTATGTTTCTCA
TAAAGGTCGACGTGTAAATGGAAAGGAAGAATGTAGTTTTGAGCATGATAGGTTGAGAGGATGTCAGTCACGTGAGAAACTGATTGAGCCGAAGATTGACAGTAGGAATGATCATCAGATAATGCACATGCAGAAGAAAGATAGTGTCAATCAAAATCCAATTAGGCACCGCAGTTCCCGAGGGAGTGTGGAAAGAAAAG
CTGAGAAGTCTATATTAGGAAATCCTGCAATGAAATCAATAGGCGATTGTGACATTTTAAGTGGTGATGGTAACTGTATTCGTCCGAGAAACTCTGTTCTAAACAGGAAAGTCATTGATGCAGCTGATACCAGGAAACTAGATTCTTACAGTGAAGATCCATCTAGATGCAGAATACAGAAGAGGGATTATTTTGTTCAT
AGCAGGAATGACAAGAAACCATTCAGGAGTGAAGATAGTGAACAATCTGAAACACACAAGCTTTTAGGAAAGCAATACAAAAATGATTCTGGGGAAGATAAGAATTTTGGCAATGTGCAAGTCATAAATGGATTTGAGTCAAGACAAGATCATGGAACAAGATCGTGGATGAACGAAGCATGGGCACCAGAACATGGAAA
CAAAGCTCACTTATCTGAGACTACAGGACCTGAAAGATTATCATTTATGTCAGATGAAACACATGAAGATTGCAGAGA
>TRINITY_DN117571_c0_g1_i13 from sample A1 / Example unspliced isoform:ATTTGATTTACTAATATTTTATCCCTGCAAATGAAATATTTGTTTTAGAATTCAATACTGTTATTAGTCCAAAAGAGAAAAAACTTGCTTCACATTTTTGTTGTTCTTATATGCAACTTTATTCCAGCTTTCTATAAAATGAACCTTTGTAATTAATAAAATAGAACATTTCCTTTAAGGTATAAGAACATTAAATATTT
TTTGATTGCAAGCAAAATGGTTACATTCATTATACTGGAATGCAATATGAGAGGAAAGGTAGGAGGGATGTAGGAGTTTGTAATTGTTTCAATGTTATATTGATATAGATCGGGTTTTGTGCAGAACAATTCTTTACAAGAAGAGAAGGATATCTTGATCTGTAATATTTCGAGCTTATTCAAGgtcgggttttgtcttt
acccttgcacatgtgtttgaattaattttgttgacttgtcatcatgaatctctttctttgttaggtgtgaaattattagatcctaatgcaagtgttcaccgcagACTGCACAAATGGAGATTGGGAGAAAGAACAAACAAATTAATGAACTTCGACAAGAGATTTCCCAGCTGAAAATTCAGGAGCCATGTTCAAATTCT
TTGATCCCAGCAACTGTGCAAATGATAGCCAAATCTGAAAAGTTGTTACATGACAAGCAATTAAATGAAGTGCAAAATAAAAATTATAGAGAAACTAGACATGCAGGTGAAATGCAAGGGATAGCCAGGATCAGTCAAAATGATTCGAAAGGTATGAAAAACATATCAAGAGATGAAGCCACCCCTTACATAAGATCACT
TGTATTGAATAATATTGAGAGAACTGTCCCATTTGCCAGGGATGCAAAGAGGCCAAAAACCATTGATGTTCAAGCAAGGACCTCTGAACATGTAAATGGTGCACAGAATTATGTTTCTCATAAAGGTCGACGTGTAAATGGAAAGGAAGAATGTAGTTTTGAGCATGATAGGTTGAGAGGATGTCAGTCACGTGAGAAAC
TGATTGAGCCGAAGATTGACAGTAGGAATGATCATCAGATAATGCACATGCAGAAGAAAGATAGTGTCAATCAAAATCCAATTAGGCACCGCAGTTCCCGAGGGAGTGTGGAAAGAAAAGCTGAGAAGTCTATATTAGGAAATCCTGCAATGAAATCAATAGGCGATTGTGACATTTTAAGTGGTGATGGTAACTGTATT
CGTCCGAGAAACTCTGTTCTAAACAGGAAAGTCATTGATGCAGCTGATACCAGGAAACTAGATTCTTACAGTGAAGATCCATCTAGATGCAGAATACAGAAGAGGGATTATTTTGTTCATAGCAGGAATGACAAGAAACCATTCAGGAGTGAAGATAGTGAACAATCTGAAACACACAAGCTTTTAGGAAAGCAATACAA
AAATGATTCTGGGGAAGATAAGAATTTTGGCAATGTGCAAGTCATAAATGGATTTGAGTCAAGACAAGATCATGGAACAAGATCGTGGATGAACGAAGCATGGGCACCAGAACATGGAAACAAAGCTCACTTATCTGAGACTACAGGACCTGAAAGATTATCATTTATGTCAGATGAAACACATGAAGATTGCAGAGAAG
AGGTGCAGACAAATGGAGAACAGAGGAGGAAGAGGTCAAAAGATAGAGAATTGCCAGAAATCATGGGTGCAGACAAGGGTGACATCTGGTCAAGTGATGCTGGAACACACTCACATGGAGTTGGCCATGTGCTACTTGACGATAGCTTGCAAAATACAACTGTTATTAAAGGTCAATTGATGCAAGCAAATGGCATCAAG
AGTTCTATTTCATTACCAGAAGTAAAGCACACTGATAGTACAGTTCTTTCCTTTGGTAATGGAGATGGTGCTGAGGCTGGGTTCAAGCTGCAATTAGGTGTGAATGAAACTTCAAAAGATTTAGTAATGTCAAGAGAATTAAATGCTGAGATGCCAAAGGAAGCAGGTGCAATTAACTTCGGAGCAGAGGAAATGAAGGA
TAGCTGTCAAGGACACCATGGAGAGTCCATGTCTGGGGACGCTAGAAAATTTCGAGTTTCCCCTTTCAGAAGCAGGGAGAAACGACATAGCAAAAACATTTTGCAACGTGGGAAGGAAGTTATGCATGAGAAAAAAGAAAGGTGTTTTGATCTTTCATTTAGCAGGAAAAGAGGAATAGAGGAAATGAAAGGCATACATA
CACATACAGACAATGGTAGCAGGCAAGCCTATGGCAACATCTGCAATGATCACGGCAGGAAAAGTAGTAGTTTTTCTTCTGATATGGATAAAAAAGGGAGGAGAGGACATGCACATCAAGTGCAGGCTAGAAATGGATTTGAGTCAGGTCAAGATCTTGAAACAGGATCATGGATGAATGAAGCAAGGGTGCCAGAACAT
GGCAGTAAAGCACACTTATCCAAGACTACGGGACCTGAAAGCCTATCATTTATTTCAGATGAAACACATGAAGTTTGTAGAGAGCAGAGGAGGGAGATGTCAAAAGATAGCAAATTGTCAGAAATTGTGGCTGCAGACAAGGGTGACATCTGGTCAAGTAATGATGGAACTTATTCACGTGAAGTTGGTCATGTTCTACT
TGACGATAGCCTTCAAAATACAACTGTTATTAATGGTCAAGGCACGCCAGCAAACAACATCAAGAGTTCTATTTCCTTACCAGCATTAAATCACACTGATAGTACAGTTTATTCCTTTGCCAATGAAGATGGTGCTGAGGCTGGGTTTAAGCTGCAATTAGGTGTGGATGAA