sp|Q9LSA9|PUMPK_ARATH ----> Uridylate kinase PUMPKIN, chloroplastic


Intron 1 GTATGATCTT ... GTGTTTGCAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A115.6774189.5
A212.7858134
A316.1857175
A423.0840177
A513.331331
A615.791001225.5
A714.092023036.3
A816.192333555
A916.171402232
A1019.341463040



>TRINITY_DN42919_c0_g10_i2 from sample A8 / Example spliced isoform
TGAAAAATAAGATATCATAAACACACCAATGGGAGGGGACTTTCGTCCAACACCCAACCGGCAAGGTCCCACCGGTGGGAAAGCCGGAAGTTGGTAAACGGCACCGTGAACCACCGTGACCCGCCGTGACGGCAACCCAGCCCGCCGTCGACGGCGACCGTTATACCTTAAAATCTCGCGGTTCTGGCACTAACGTCGTC
CACGCCTTCCGTCTTCTCCCTTGAAACCCTAGCCCCCTTGAAACCCTAGGCCCTGGTTTCCCATCCTCTTCATTCTGCATGGCCTGCGAGGAAGATTTTGTTATGCTGGAAGCGGCTCACTCTCACCAGGCTCACCAGCTCCAACACCATCACCATCACCATCCTCAGGCCTTCCAGCCTCCTCAATTCCTTCCCAACAA
GCAGCAGCAGACCCTCCCCCACGGTCACATTGACGCCCATGGCCTCAACAGCGTGGAGAGCCGGAAGAAGGTCCCCGGGGAAGATGAAGATTATAGCGATGCCGCCTTCTGCTCTCAGGGCGATCCGAAATGCTCCCCGGACTTTGTCCAAGAGATCGCCCCCCACCACCATCATCACCACCATGAATGCTTTGGCGACG
ATGGGTTTCGAACCGGTGACGAGGGCAAGCCCTCAGGGGCTAAGAGCCGGAGTCGGGCCGGCCAGGGGAAGCTGAAGGATTCCCGCGAGGAATTAAGCGACGGTGGGACTTATTACCACAAGAAACCCAAAGGCGGCGGAGGTGGGGATTATAAGAAGGATCGCGAAGAGTGGAGCGACAGTGCCATTGGATGCCTGTTG
GATGCCTACACCGAGAAATATGTGAAGCTGAATCGGGGGAATTTGCGTGGCCGGGACTGGGAGGAGGTTGCCTGTATCGTTAGCGAGCGTTGCGAAAGGCAGAAGTCGGCGAAGAGCATTGAACAGTGTAAGAATAAGGTGGATAATTTGAAGAAAAGGTATAAGTCCGAGAGGAATAGGCTGACTAGTGGGAGTGCTAC
TGTGAGCCACTGGCCTTGGTATAAGAAGATGGATCAGATTGTCGGCTCTTCGGTTTCCAAGGCCGTTTCGGATGAAGATAAGTCTATGGGCGGTGGTAACAGTGCTATGAATATGGCAAGGCCTGCTAAGAGGTTTGCAGCAATTACACCCTCTCCTGTTGGCCTTTCCAATAATTTGAAGACTAAAACGTTACCAACCC
CAAGATGGCGTAGAGTGCTTCTAAAAATAAGTGGGACTGCTTTAGTAGGGAATGCACAAAATGTTGACCCAAAGGTGACATCGTTAATAGCCAGAGAAATTGCAGCTGTTAATCGACTTGGTGTAGAGGTTGCAATTGTTGTAGGAGGGCGGAACTTCTTTTGTGGAGCTTCATGGGTGCGATCTACAGGTCTGGATAGA
GCATCTGCAGATCAGATAGGGATGATGGCAACTGTCATGAATTCCATTATTCTTCAGGCTGATATGGAGAATTTGGGTATTCAAACTCGTGTTCAAACTGCTTTCAAAATGTCAGAGGTTGCAGAGCCATACATTCAACGGCGTGCAATCCGTCATCTTGAGAAAGGGAGAGTTGTCATATTTGGTGCAGGGACGGGCAA
TCCCTTTTTCAGCACTGATACAGCAGCTGCTCTTAGAGCTTCTGAGATTCATGCAGAGGTGGTCCTAAAAGGAACAAATGTAGATGGAGTCTATGATTGTGATCCCAGAAAGAATAATAATGCTATCCTTGATCACATAGCATATAGGGATTTTGTTACCAAAGGTATTCCAGCAACTGCTATGGACATGACGGCTATAA
CCTTATGTGAAGAAAATGGAATTCCAATTGTCATTTTTAATTTGCATGAGCCAGGAAATATTTCAAGGGCTCTCACTGGAGATCTAATTGGCACTCTGATTGACCAGACGGGAAAGATTGGCTAAGTATGTTTATTTACAAGAAACGGAATGTAGAATCCATTGGAGATACAGATAGCTTCCCAAGGAATAGTGTCAAAT
GAGACATGAATCAGGATGGTTATGCATCCATGACTCAGAGACTAATGGTTACTGCAAATCATGTGGGTGTGCAAGTGTCCGATATTCAGCAAGGTGTCTACTCAACCAGGATGGAATTTGTAAATTAATATGGTCTCATCAATATGGGTGGTTTGCATCAGTTTGCCACAAGTATGGGGCCATTTTGTATATGTTAGATA
ACACTATTTTTTTGGCTCATTTGAAAGAGTCACTGGGTTGATAATGATATAAAAATTACTTCCATTTCTGTTCTGATTCTTTTGTGATGAATCCTTGTTAAGTTTTTTGCCCTCGGGTTATGCATGATGCACAAAGTAAAATCCAATATCTTATCTTTATGACATTTTTTTGGGTTTCTGATCTGTACAGAGTATCTTCA
TTGTACTCATCTGCCAATGTTGGTTTCATGATTATTATGTTTTTATAAAATTTTCAACATATTCATTATCTTTGTTATTTGCTACCATAATATTATTGGAGTTTTTTACCATAATATTATTGGAGTTTTTTACCATAATATTATTGGAGTTTT


>TRINITY_DN42919_c0_g10_i1 from sample A8 / Example unspliced isoform:
TGAAAAATAAGATATCATAAACACACCAATGGGAGGGGACTTTCGTCCAACACCCAACCGGCAAGGTCCCACCGGTGGGAAAGCCGGAAGTTGGTAAACGGCACCGTGAACCACCGTGACCCGCCGTGACGGCAACCCAGCCCGCCGTCGACGGCGACCGTTATACCTTAAAATCTCGCGGTTCTGGCACTAACGTCGTC
CACGCCTTCCGTCTTCTCCCTTGAAACCCTAGCCCCCTTGAAACCCTAGGCCCTGGTTTCCCATCCTCTTCATTCTGCATGGCCTGCGAGGAAGATTTTGTTATGCTGGAAGCGGCTCACTCTCACCAGGCTCACCAGCTCCAACACCATCACCATCACCATCCTCAGGCCTTCCAGCCTCCTCAATTCCTTCCCAACAA
GCAGCAGCAGACCCTCCCCCACGGTCACATTGACGCCCATGGCCTCAACAGCGTGGAGAGCCGGAAGAAGGTCCCCGGGGAAGATGAAGATTATAGCGATGCCGCCTTCTGCTCTCAGGGCGATCCGAAATGCTCCCCGGACTTTGTCCAAGAGATCGCCCCCCACCACCATCATCACCACCATGAATGCTTTGGCGACG
ATGGGTTTCGAACCGGTGACGAGGGCAAGCCCTCAGGGGCTAAGAGCCGGAGTCGGGCCGGCCAGGGGAAGCTGAAGGATTCCCGCGAGGAATTAAGCGACGGTGGGACTTATTACCACAAGAAACCCAAAGGCGGCGGAGGTGGGGATTATAAGAAGGATCGCGAAGAGTGGAGCGACAGTGCCATTGGATGCCTGTTG
GATGCCTACACCGAGAAATATGTGAAGCTGAATCGGGGGAATTTGCGTGGCCGGGACTGGGAGGAGGTTGCCTGTATCGTTAGCGAGCGTTGCGAAAGGCAGAAGTCGGCGAAGAGCATTGAACAGTGTAAGAATAAGGTGGATAATTTGAAGAAAAGGTATAAGTCCGAGAGGAATAGGCTGACTAGTGGGAGTGCTAC
TGTGAGCCACTGGCCTTGGTATAAGAAGATGGATCAGATTGTCGGCTCTTCGGTTTCCAAGGCCGTTTCGGATGAAGATAAGTCTATGGGCGGTGGTAACAGTGCTATGAATATGGCAAGGCCTGCTAAGAGGTTTGCAGCAATTACACCCTCTCCTGTTGGCCTTTCCAATAATTTGAAGACTAAAACGTTACCAACCC
CAAGATGGCGTAGAGTGCTTCTAAAAATAAGTGGGACTGCTTTAGTAGGGAATGCACAAAATGTTGACCCAAAGGTGACATCGTTAATAGCCAGAGAAATTGCAGCTGTTAATCGACTTGGTGTAGAGGTTGCAATTGTTGTAGGAGGGCGGAACTTCTTTTGTGGAGCTTCATGGGTGCGATCTACAGGTCTGGATAGA
GCATCTGCAGATCAGATAGGGATGATGGCAACTGTCATGAATTCCATTATTCTTCAGGCTGATATGGAGAATTTGGGTATTCAAACTCGTGTTCAAACTGCTTTCAAAATGTCAGAGGTTGCAGAGCCATACATTCAACGGCGTGCAATCCGTCATCTTGAGAAAGGGAGAGTTGTCATATTTGGTGCAGGGACGGGCAA
TCCCTTTTTCAGCACTGATACAGCAGCTGCTCTTAGAGCTTCTGAGAgtatgatcttgtttctgttaactgaagaaataatttgaacttgaaagcatcttatgctagaggcataggaatgtacttagcgtattttgtgtttgcagTTCATGCAGAGGTGGTCCTAAAAGGAACAAATGTAGATGGAGTCTATGATTGTGA
TCCCAGAAAGAATAATAATGCTATCCTTGATCACATAGCATATAGGGATTTTGTTACCAAAGGTATTCCAGCAACTGCTATGGACATGACGGCTATAACCTTATGTGAAGAAAATGGAATTCCAATTGTCATTTTTAATTTGCATGAGCCAGGAAATATTTCAAGGGCTCTCACTGGAGATCTAATTGGCACTCTGATTG
ACCAGACGGGAAAGATTGGCTAAGTATGTTTATTTACAAGAAACGGAATGTAGAATCCATTGGAGATACAGATAGCTTCCCAAGGAATAGTGTCAAATGAGACATGAATCAGGATGGTTATGCATCCATGACTCAGAGACTAATGGTTACTGCAAATCATGTGGGTGTGCAAGTGTCCGATATTCAGCAAGGTGTCTACT
CAACCAGGATGGAATTTGTAAATTAATATGGTCTCATCAATATGGGTGGTTTGCATCAGTTTGCCACAAGTATGGGGCCATTTTGTATATGTTAGATAACACTATTTTTTTGGCTCATTTGAAAGAGTCACTGGGTTGATAATGATATAAAAATTACTTCCATTTCTGTTCTGATTCTTTTGTGATGAATCCTTGTTAAG
TTTTTTGCCCTCGGGTTATGCATGATGCACAAAGTAAAATCCAATATCTTATCTTTATGACATTTTTTTGGGTTTCTGATCTGTACAGAGTATCTTCATTGTACTCATCTGCCAATGTTGGTTTCATGATTATTATGTTTTTATAAAATTTTCAACATATTCATTATCTTTGTTATTTGCTACCATAATATTATTGGAGT
TTTTTACCATAATATTATTGGAGTTTTTTACCATAATATTATTGGAGTTTT



Intron 2 GTGAGTTATG ... TTTCTTGCAG

SampleRetention score (%)Exon junction reads5'ss reads3'ss reads
A117.48851620
A220.4139416
A322.3541912
A412.363992
A59.091011
A621792121
A720.891784648
A818.831945733
A918.31542940
A1019.531032624



>TRINITY_DN41395_c1_g3_i1 from sample A6 / Example spliced isoform
ACCACCGTGACCCGCCGTGACGGCAACACAGCCCGCCGTCGACGGCGACCGTTATAGCTTAAAATCTCGCGGTTCTGGCACTAACGTCGTCCACGCCTTCCGTCTTCTCCCTTGAAACCCTAGCCCCCTTGAAACCCTAGGCCCTGGTTTCCCATCCTCTTCATTCTGCATGGCCTGCGAGGAAGATTTTGTTATGCTGG
AAGCGGCTCACTCTCACCAGGCTCACCAGCTTCAACACCATCACCATCACCATCCTCAGGCCTTCCAGCCTCCTCAATTCCTTCCCAACAAGCAGCAGCAGACCCTCCCCCACGGTCACATTGACGCCCATGGCCTCAACAGCGTGGAGAGCCGGAAGAAGGTCCCCGGGGAAGATGAAGATTATAGCGATGCCGCCTTC
TGCTCTCAGGGCGATCCGAAATGCTCCCCGGACTTTGTCCAAGAGATCGCCCCCCACCACCATCATCACCACCATGAATGCTTTGGCGACGATGGGTTTCGAACCGGTGACGAGGGCAAGCCCTCAGGGGCTAAGAGCCGGAGTCGGGCCGGCCAGGGGAAGCTGAAGGATTCCCGCGAGGAATTAAGCGACGGTGGGAC
TTATTACCACAAGAAACCCAAAGGAGGCGGAGGTGGGGATTATAAGAAGGATCGCGAAGAGTGGAGCGACAGTGCCATTGGATGCCTGTTGGATGCCTACACCGAGAAATATGTGAAGCTGAATCGGGGGAATTTGCGTGGCCGGGACTGGGAGGAGGTTGCCTGTATCGTTAGCGAGCGTTGCGAAAGGCAGAAGTCGG
CGAAGAGCATTGAACAGTGTAAGAATAAGGTGGATAATTTGAAGAAAAGGTATAAGTCCGAGAGGAATAGGCTGACTAGTGGGAGTGCTACTGTGAGCCACTGGCCTTGGTATAAGAAGATGGATCAGATTGTCGGCTCTTCGGTTTCCAAGGCCGTTTCGGATGAAGATAAGTCTATGGGCGGTGGTAACAGTGCTCTG
AATATGGCAAGGCCTGCTAAGAGGTTTGCAGCAATTACACCCTCTCCTGTTGGCCTTTCCAATAATTTGAAGACTAAAACGTTACCAACCCCAAGATGGCGTAGAGTGCTTCTAAAAATAAGTGGGACTGCTTTAGTAGGGAATGCACAAAATGTTGACCCAAAGGTGACATCGTTAATAGCCAGAGAAATTGCAGCTGT
TAATCGACTTGGTGTAGAGGTTGCAATTGTTGTAGGAGGGCGGAACTTCTTTTGTGGAGCTTCATGGGTGCGATCTACAGGTCTGGATAGAGCATCTGCAGATCAGATAGGGATGATGGCAACTGTCATGAATTCCATTATTCTTCAGGCTGATATGGAGAATTTGGGTATTCAAACTCGTGTTCAAACTGCTTTCAAAA
TGTCAGAGGTTGCAGAGCCATACATTCAACGGCGTGCAATCCGTCATCTTGAGAAAGGGAGAGTTGTCATATTTGGTGCAGGGACGGGCAATCCCTTTTTCAGCACTGATACAGCAGCTGCTCTTAGAGCTTCTGAGATTCATGCAGAGGTGGTCCTAAAAGGAACAAATGTAGATGGAGTCTATGATTGTGATCCCAGA
AAGAATAATAATGCTATCCTTGATCACATAGCATATAGGGATTTTGTTACCAAAGGTCTTCCAGCAACTGCTATGGACATGACGGCTATAACCTTATGTGAAGAAAATGGAATTCCAATTGTCATTTTTAATTTGCATGAGCCAGGAAATATTTCAAGGGCTCTCACTGGAGATCTAATTGGCACTCTGATTGACCAGAC
GGGAAAGATTGGCTAAGTATGTTTATTTACAAGAAACGGAATGTAGAATCCATTGGAGATACAGATAGCTTCCCAAGGAATAGTGTCAAATGAGACATGAATCAGGATGGTTATGCATCCATGACTCAGAGACTAATGGTTACTGCAAATCATGTGGGTGTGCAAGTGTCCGATATTCAGCAAGGTGTCTACTCAACCAG
GATGGAATTTGTAAATTAATATGGTCTCATCAATATGGGTGGTTTGCATCAGTTTGCCACAAGTATGGGGCCATTTTGTATATGTTAGATAACACTATTTTTTTGGCTCATTTGAAAGAGTCACTGGGTTGATAATGATATAAAAATTACTTCCATTTCTGTTCTGATTCTTTTGTGATGAATCCTTGTTAATTTTTTTG
CCCTCGGGTTATGCATGATGCACAAAGTAAAATCCAATATCTTATCTTTATGACATTTTTTTGGGTTTCTGATCTGTACAGAGTATCTTCATTGTACTCATCTGCCAATGTTGGTTTCATGATTATTATGTTTTTATAAAATTTTCA


>TRINITY_DN41395_c1_g3_i2 from sample A6 / Example unspliced isoform:
ACCACCGTGACCCGCCGTGACGGCAACACAGCCCGCCGTCGACGGCGACCGTTATAGCTTAAAATCTCGCGGTTCTGGCACTAACGTCGTCCACGCCTTCCGTCTTCTCCCTTGAAACCCTAGCCCCCTTGAAACCCTAGGCCCTGGTTTCCCATCCTCTTCATTCTGCATGGCCTGCGAGGAAGATTTTGTTATGCTGG
AAGCGGCTCACTCTCACCAGGCTCACCAGCTTCAACACCATCACCATCACCATCCTCAGGCCTTCCAGCCTCCTCAATTCCTTCCCAACAAGCAGCAGCAGACCCTCCCCCACGGTCACATTGACGCCCATGGCCTCAACAGCGTGGAGAGCCGGAAGAAGGTCCCCGGGGAAGATGAAGATTATAGCGATGCCGCCTTC
TGCTCTCAGGGCGATCCGAAATGCTCCCCGGACTTTGTCCAAGAGATCGCCCCCCACCACCATCATCACCACCATGAATGCTTTGGCGACGATGGGTTTCGAACCGGTGACGAGGGCAAGCCCTCAGGGGCTAAGAGCCGGAGTCGGGCCGGCCAGGGGAAGCTGAAGGATTCCCGCGAGGAATTAAGCGACGGTGGGAC
TTATTACCACAAGAAACCCAAAGGAGGCGGAGGTGGGGATTATAAGAAGGATCGCGAAGAGTGGAGCGACAGTGCCATTGGATGCCTGTTGGATGCCTACACCGAGAAATATGTGAAGCTGAATCGGGGGAATTTGCGTGGCCGGGACTGGGAGGAGGTTGCCTGTATCGTTAGCGAGCGTTGCGAAAGGCAGAAGTCGG
CGAAGAGCATTGAACAGTGTAAGAATAAGGTGGATAATTTGAAGAAAAGGTATAAGTCCGAGAGGAATAGGCTGACTAGTGGGAGTGCTACTGTGAGCCACTGGCCTTGGTATAAGAAGATGGATCAGATTGTCGGCTCTTCGGTTTCCAAGGCCGTTTCGGATGAAGATAAGTCTATGGGCGGTGGTAACAGTGCTCTG
AATATGGCAAGGCCTGCTAAGAGGTTTGCAGCAATTACACCCTCTCCTGTTGGCCTTTCCAATAATTTGAAGACTAAAACGTTACCAACCCCAAGATGGCGTAGAGTGCTTCTAAAAATAAGTGGGACTGCTTTAGTAGGGAATGCACAAAATGTTGACCCAAAGGTGACATCGTTAATAGCCAGAGAAATTGCAGCTGT
TAATCGACTTGGTGTAGAGGTTGCAATTGTTGTAGGAGGGCGGAACTTCTTTTGTGGAGCTTCATGGGTGCGATCTACAGGTCTGGATAGAGCATCTGCAGATCAGATAGGGATGATGGCAACTGTCATGAATTCCATTATTCTTCAGGCTGATATGGAGAATTTGGGTATTCAAACTCGTGTTCAAACTGCTTTCAAAA
TGTCAGAGGTTGCAGAGCCATACATTCAACGGCGTGCAATCCGTCATCTTGAGAAAGGGAGAGTTGTCATATTTGGTGCAGGGACGGGCAATCCCTTTTTCAGCACTGATACAGCAGCTGCTCTTAGAGCTTCTGAGATTCATGCAGAGGTGGTCCTAAAAGGAACAAATGTAGATGGAGTCTATGATTGTGATCCCAGA
AAGAATAATAATGCTATCCTTGATCACATAGCATATAGGGATTTTGTTACCAAAGGTCTTCCAGCAACTGCTATGGACATGACGGCTATAACCTTATGTGAAGAAAATGGAATTCCAAgtgagttatggtgtatattttttgctttctgtattgttttgacacattgtatgtaacatgtgaatggaataatgctttcctt
cctctgaaattgaagatcgttttcttgcagTTGTCATTTTTAATTTGCATGAGCCAGGAAATATTTCAAGGGCTCTCACTGGAGATCTAATTGGCACTCTGATTGACCAGACGGGAAAGATTGGCTAAGTATGTTTATTTACAAGAAACGGAATGTAGAATCCATTGGAGATACAGATAGCTTCCCAAGGAATAGTGTCA
AATGAGACATGAATCAGGATGGTTATGCATCCATGACTCAGAGACTAATGGTTACTGCAAATCATGTGGGTGTGCAAGTGTCCGATATTCAGCAAGGTGTCTACTCAACCAGGATGGAATTTGTAAATTAATATGGTCTCATCAATATGGGTGGTTTGCATCAGTTTGCCACAAGTATGGGGCCATTTTGTATATGTTAG
ATAACACTATTTTTTTGGCTCATTTGAAAGAGTCACTGGGTTGATAATGATATAAAAATTACTTCCATTTCTGTTCTGATTCTTTTGTGATGAATCCTTGTTAATTTTTTTGCCCTCGGGTTATGCATGATGCACAAAGTAAAATCCAATATCTTATCTTTATGACATTTTTTTGGGTTTCTGATCTGTACAGAGTATCT
TCATTGTACTCATCTGCCAATGTTGGTTTCATGATTATTATGTTTTTATAAAATTTTCA