sp|Q9ZPR0|COQ4_ARATH ----> Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial
Intron 1 GTATGTCTAA ... GTTTTGGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 84.64 | 9.4 | 68 | 34 |
| A2 | 67.21 | 18.1 | 45 | 28 |
| A3 | 64.11 | 15 | 33 | 19 |
| A4 | 56.74 | 16.1 | 32 | 9 |
| A5 | 66.71 | 10.3 | 22 | 18 |
| A6 | 65.7 | 220.9 | 559 | 262 |
| A7 | 64.74 | 164.6 | 419 | 166 |
| A8 | 65.78 | 199.1 | 502 | 239 |
| A9 | 69.39 | 138.9 | 421 | 194 |
| A10 | 64.03 | 90.4 | 224 | 90 |
>TRINITY_DN46193_c0_g1_i20 from sample A7 / Example spliced isoformCAAGAGCAAGCTCAATGCTTGTCATGCCAAGTCTTATACATTGCGAAGGTGTTGGTGATGTCTCGTGGCATAAATATTTGACCAATGTAAAACTTGAAACCATATGATATATGCACCAGATGGGGACGTAGGTTGGCATTTAAGATAGCCGATGTGATGGGCAGGCATGGAGCGAATGATGAGCCTCCATGCTGGCATAT
CATTTATGCTTTGACCTGAGGTAGGGTTTTCTTCATTGGTGCTCTTTCGGGAAGGTTCCCTTGTTCATTTGATCTTCCATTTCTGGAAACGTTTGCACAGAGTCACAGCTCGGCTCTGTCTTCAGGTTTGAATTCGTGGTCCCTTGAAAGAGGCGTTGTTGTGACAGCGAAACTCCTTCTTGTGAACAGGTCTTGGATGC
TTGCAAACAACCACTATGCAATGATGTACCTTGAGAGTGGTATTATCTAGATCAAATACTGGAGAAGGGCTGAGGGGCTTTTGGTTCACATACTTTTTTGAGGAAGAAAAGAGCATTATGCATATTTTTGAAGGACATGCTCGGGTGCCTTTAAAGGGATGGCAGCAGGCAGCAGTAGCTGTTGGATCAGCTCTAGGGGC
CCTGATGAACCCAGCGAGAGCAGATCTTATTGCTGCACTTGGTGAGACAACTGGCAAACCAGCTTTTCAGAATCTTCTTTATAGGATGAAAAGAAGTCATGAGGGAAGAATAGTTCTGCAGGAGCGGCCACGAGTGATATCTTCTGTTGTTGGTCATGCATGGGATCTACCAGAAAATACGTTTGGTGCAGCCTATGCCA
AATTTATGGGTTCTAGGAACTTCTCTCCTGATGATCGCCCCCCTGTTCGTTTTATGGATACAGAAGAGCTTGCATATGTTGCAACTCGAGCCAGGGAGATTCATGATTTTTGGCATGTATTGTTTAATCTCCCAACAAACCTGTTAGGGGAATCAGCTCTTAAAGTTGTGGAATTTCAGCAGTTGTATTTGCCAATGTGC
CTCCTTTCCACAATAGGTGGTTCAGTACGAATGAAGACAAAACAACGGGAACACTTTTTTAAGTACTATTTTCCTTGGGCTGTCAGAGCTGGGATGAGCTGCACAGATATCATGTCGATATATTATGAAAAGCATTTTGATGAGGACTTGGAACTCGTACGGAACCGATGGGGCATATTACCTGCTCCTGACATTAAGAA
TTTAAGACCACCTTCGAATTCATAGTAAAATCAATGGATGTGGTTGTGGAGATTGATTTTCTGGGCTCAGGGCTCGGGACTGCGACAACTTTATTATCCTAGTTGTTGACGCTTCGGACTCTACTAGCATAGTCCATCCTCATGACAAAGGATGGATGGTTGAGGAAGAAGCCATAAAATTGACTATAAAGGACAGGGAA
CCCAAAATCTGTCAAGCCATTAAGCAACCCTCGTTTTCAGAAGTAGACCCTAAAACCAACCTTTGTAAAATATACTCATCCTTCCAGTGTTTCATTCATTTGATAATTTATAGTTGTGAAGTCTGTAGATTAAGCTTTTCAATTTCATATTAATACTTGACTGATATATTACTGGTGTTTTGAATTTATGCTAAAGAATT
TTTTTATTGTTAGCTGCCACCTTATGATATACACACC
>TRINITY_DN46193_c0_g1_i15 from sample A7 / Example unspliced isoform:CAAGAGCAAGCTCAATGCTTGTCATGCCAAGTCTTATACATTGCGAAGGTGTTGGTGATGTCTCGTGGCATAAATATTTGACCAATGTAAAACTTGAAACCATATGATATATGCACCAGATGGGGACGTAGGTTGGCATTTAAGATAGCCGATGTGATGGGCAGGCATGGAGCGAATGATGAGCCTCCATGCTGGCATAT
CATTTATGCTTTGACCTGAGGTTTGAATTCGTGGTCCCTTGAAAGAGGCGTTGTTGTGACAGCGAAACTCCTTCTTGTGAACAGGTATTGTTTGCTTCAGGCTGGGCTCTGTTCTTAAATATAGCTCTGTGTTTTGATTTATATGACCATACTAATCGTTTGACTCTGTTTTGCGTTGTGAGGTTAATGTGCATGCAAAG
CATGGCTTAGAGCTGCCACGCTTGCATTCAGAAGACGACTTCTGCTCTCTGGGTCTTGGATGCTTGCAAACAACCACTATGCAATGATGTACCTTGAGAGTGGTATTATCTAGATCAAATACTGGAGAAGGGCTGAGGGGCTTTTGGTTCACATACTTTTTTGAGGAAGAAAAGAGCATTATGCATATTTTTGAAGGACA
TGCTCGGGTGCCTTTAAAGGGATGGCAGCAGGCAGCAGTAGCTGTTGGATCAGCTCTAGGGGCCCTGATGAACCCAGCGAGAGCAGATCTTATTGCTGCACTTGGTGAGACAACTGGCAAACCAGCTTTTCAGAATCTTCTTTATAGGATGAAAAGAAGTCATGAGGGAAGAATAGTTCTGCAGGAGCGGCCACGAGTGA
TATCTTCTGTTGTTGGTCATGCATGGGATCTACCAGAAAATACGTTTGGTGCAGCCTATGCCAAATTTATGGGTTCTAGGAACTTCTCTCCTGATGATCGCCCCCCTGTTCGTTTTATGGATACAGAAGAGCTTGCATATGTTGCAACTCGAGCCAGGGAGATTCATGATTTTTGGCATGTATTGTTTAATCTCCCAACA
AACCTGTTAGGGGAATCAGCTCTTAAAGTTGTGGAATTTCAGCAGTTGTATTTGCCAATGTGCCTCCTTTCCACAATAGGTGGTTCAGTACGAATGAAGACAAAACAACGGGAACACTTTTTTAAGTACTATTTTCCTTGGGCTGTCAGAGCTGGGATGAGCTGCACAGATATCATGTCGATATATTATGAAAAGCATTT
TGATGAGGACTTGGAACTCGTACGGAACCGATGGGGCATATTACCTGCTTCCGACTTTAAGAATTTAAGACCACTTTCGAATTCATAGTAAAATCAATGgtatgtctaagcaatcattggttttagtttcacaaaaaagcaattgttaaggatctagtggttctcttgttagcctagattaactgtattagtatatgatt
tgttttggtagGATGTGGTTGTGGAGATTGATTTTCTGGGCTCAGGGCTCGGGACTGCGACAACTTTATTATCCTAGTTGTTGACGCTTCGGACTCTACTAGCATAGTCCATCCTCATGACAAAGGATGGATGGTTGAGGAAGAAGCCATAAAATTGACTATAAAGGACAGGGAACCCAAAATCTGTCAAGCCATTAAGC
AACCCTCGTTTTCAGAAGTAGACCCTAAAACCAACCTTTGTAAAATATACTCATCCTTCCAGTGTTTCATTCATTTGATAATTTATAGTTGTGAAGTCTGTAGATTAAGCTTTTCAATTTCATATTAATACTTGACTGATATATTACTGGTGTTTTGAATTTATGCTAAAGAATTTTTTTATTGTTAGCTGCCACCTTAT
GATATACACACC
Intron 2 GTATTGTTTT ... GCGTTGTGAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 35.47 | 28.1 | 19.1 | 12.4 |
| A2 | 33.73 | 36.9 | 16.6 | 21.3 |
| A3 | 41.29 | 25.9 | 22.7 | 14.1 |
| A4 | 36.9 | 41 | 28 | 20.6 |
| A5 | 37.15 | 22.5 | 17.7 | 9.3 |
| A6 | 18.2 | 170.4 | 44.9 | 32.3 |
| A7 | 16.58 | 150.7 | 41.4 | 19.7 |
| A8 | 15.28 | 89.1 | 20.9 | 11.7 |
| A9 | 18.02 | 124.4 | 38 | 18.1 |
| A10 | 21.84 | 106.7 | 31.1 | 28.8 |
>TRINITY_DN120210_c0_g1_i11 from sample A1 / Example spliced isoformTAAAACTTGAAACCATATGATATATGCACCAGATGGGGACGTAGGTTGGCATTTAAGACAGCCGATGTGATGGGCAGGCATGGAGCGAATGATGAGCCTCCATGCTGGCATATCATTTATGCTTTGACCTGAGGTAGGGTTTTCTTCATTGGTGCTCTTTCGGGAAGGTTCCCTTGTTCATTTGATCTTCCATTTCTGGA
AACGTTTGCACAGAGTCAAAGCTCGGCTCTGTCTCAGGTTTGAATTCGTGGTCTCTTGAAAGAGGCGTTGTTGTGACAGCGAAACTCCTTCTTGTGAACAGGTTAATGTGCATGCAAAGCATGGCTTAGAGCTGCCACGCTTGCATTCAGAAGACGACTTCTGCTCTCTGGATAGTTCTGCAGGAGCGGCCACGAGTGAT
ATCTTCTGTTGTTGGTCATGCATGGGATCTACCAGAAAATACGTTTGGTGCAGCCTATGCCAAATTTATGGGTTCTAGGAACTTCTCTCCTGATGATCGCCCCCCTGTTCGTTTTATGGATACAGAAGAGCTTGCATATGTTGCAACTCGAGCCAGGGAGATTCATGATTTTTGGCATGTATTGTTTAATCTCCCAACAA
ACCTGTTAGGGGAATCAGCTCTTAAAGTTGTGGAATTTCAGCAGTTGTATTTGCCAATGTGCCTCCTTTCCACAATAGGTGGTTCAGTACGAATGAAGACAAAACAACGGGAACACTTTTTTAAGTACTATTTTCCTTGGGCTGTCAGAGCTGGGATGAGCTGCACAGATATCATGTCGATATATTATGAAAAGCATTTT
GATGAGGACTTGGAACTCGTACGGAACCGATGGGGCATATTACCTGCTTCCGACTTTAAGAATTTAAGACCACTTTCGAATTCATAGTAAAATCAATGG
>TRINITY_DN120210_c0_g1_i18 from sample A1 / Example unspliced isoform:TTGAATTCGTGGTCCCTTGAAAGAGGCGTTGTTGTGACAGCGAAACTCCTTCTTGTGAACAGgtattgttttgcttcaggctgggctctgttctttaagatagctctgtgttttgatttatatgaccatacaaatcgtttgactctgttttgcgttgtgagGTTAATGTGCATGCAAAGCATGGCTTAGAGCTGCCACGC
TTGCATTCAGAAGACGACTTCTGCTCTCTGGATAGTTCTGCAGGAGCGGCCACGAGTGATATCTTCTGTTGTTGGTCATGCATGGGATCTACCAGAAAATACGTTTGGTGCAGCCTATGCCAAATTTATGGGTTCTAGGAACTTCTCTCCTGATGATCGCCCCCCTGTTCGTTTTATGGATACAGAAGAGCTTGCATATG
TTGCAACTCGAGCCAGGGAGATTCATGATTTTTGGCATGTATTGTTTAATCTCCCAACAAACCTGTTAGGGGAATCAGCTCTTAAAGTTGTGGAATTTCAGCAGTTGTATTTGCCAATGTGCCTCCTTTCCACAATAGGTGGTTCAGTACGAATGAAGACAAAACAACGGGAACACTTTTTTAAGTACTATTTTCCTTGG
GCTGTCAGAGCTGGGATGAGCTGCACAGATATCATGTCGATATATTATGAAAAGCATTTTGATGAGGACTTGGAACTCGTACGGAACCGATGGGGCATATTACCTGCTTCCGACTTTAAGAATTTAAGACCACTTTCGAATTCATAGTAAAATCAATGG
Intron 3 GTAGGGTTTT ... TCTGTCTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 69.68 | 11.4 | 13.8 | 25.9 |
| A2 | 88.1 | 6.2 | 11 | 41.2 |
| A3 | 51.95 | 25.3 | 7 | 27.6 |
| A4 | 64.37 | 20.5 | 6.6 | 37.1 |
| A5 | 70.61 | 9.5 | 5 | 22.3 |
| A6 | 57.12 | 91.8 | 23.8 | 121.4 |
| A7 | 65.33 | 67.9 | 24.6 | 127.6 |
| A8 | 59.77 | 47.4 | 18 | 70.6 |
| A9 | 60.23 | 65.8 | 23.5 | 100.4 |
| A10 | 64.4 | 56.8 | 37.5 | 103 |
>TRINITY_DN120210_c0_g1_i17 from sample A1 / Example spliced isoformTAAAACTTGAAACCATATGATATATGCACCAGATGGGGACGTAGGTTGGCATTTAAGACAGCCGATGTGATGGGCAGGCATGGAGCGAATGATGAGCCTCCATGCTGGCATATCATTTATGCTTTGACCTGAGGTTTGAATTCGTGGTCCCTTGAAAGAGGCGTTGTTGTGACAGCGAAACTCCTTCTTGTGAACAGGTT
AATGTGCATGCAAAGCATGGCTTAGAGCTGCCACGCTTGCATTCAGAAAACGACTTCTGCTCTCTGGGTAAGCTCATGGCTCCCTATGGATTCGTTTTACTCTGTGGAGAAGCGACCTTGAAGATGGTCTTGGTTCTTGTTTGTAAGTCATTATGGTTTGGTGTTCTTATCACCGGCTTGCTTGCGCTTTCAGCAGAGAG
AGAAGGAAGTCATAGTTTCCTTAGTAGGGTTGACCCTCTTTCGATTTTCATTGCAATCTCTTCCCCATTGGGGTCTTGGATGCTTGCAAACAACCACTATGCAATGATGTACCTTGAGAGTGGTATTATCTAGATCAAATACTGGAGAAGGGCTGAGGGGCTTTTGGTTCACATACTTTTTTGAGGAAGAAAAGAGCATT
ATGCATATTTTTGAAGGACATGCTCGGGTGCCTTTAAAGGGATGGCAGCAGGCAGCAGTAGCTGTTGGATCAGCTCTAGGGGCCCTGATGAACCCAGCGAGAGCAGATCTTATTGCTGCACTTGGTGAGACAACTGGCAAACCAGCTTTTCAGAATCTTCTTTATAGGATGAAAAGAAGTCATGAGGGAAGAATAGTTCT
GCAGGAGCGGCCACGAGTGATATCTTCTGTTGTTGGTCATGCATGGGATCTACCAGAAAATACGTTTGGTGCAGCCTATGCCAAATTTATGGGTTCTAGGAACTTCTCTCCTGATGATCGCCCCCCTGTTCGTTTTATGGATACAGAAGAGCTTGCATATGTTGCAACTCGAGCCAGGGAGATTCATGATTTTTGGCATG
TATTGTTTAATCTCCCAACAAACCTGTTAGGGGAATCAGCTCTTAAAGTTGTGGAATTTCAGCAGTTGTATTTGCCAATGTGCCTCCTTTCCACAATAGGTGGTTCAGTACGAATGAAGACAAAACAACGGGAACACTTTTTTAAGTACTATTTTCCTTGGGCTGTCAGAGCTGGGATGAGCTGCACAGATATCATGTCG
ATATATTATGAAAAGCATTTTGATGAGGACTTGGAACTCGTACGGAACCGATGGGGCATATTACCTGCTTCCGACTTTAAGAATTTAAGACCACTTTCGAATTCATAGTAAAATCAATGGATGTGGTTGTGGAGATTGATTTTCTGGGCTCAGGGCTCGGGACTGCGACAACTTTATTATCCTAGTTGTTGACGCTTCGG
ACTCTACTAGCATAGTCCATCCTCATGACAAAGGATGGATGGTTGAGGAAGAAGCCATAAAATTGACTATAAAGGACAGGGAACCCAAAATCTGTCAAGCCATTAAGCAACCCTCGTTTTCAGAAGTAGACCCTAAAACCAACCTTTGTAAAATATACTCATCCTTCCAGTGTTTCATTCATTTGATAATTTATAGTTGT
GAAGTCTGTAGATTAAGCTTTTCAATTTCATATTAATACTTGACTGATATATTACTGGTGTTTTGAATTTATGCTAAAGAATTTTTTTATTGTTAGCTGC
>TRINITY_DN120210_c0_g1_i11 from sample A1 / Example unspliced isoform:TAAAACTTGAAACCATATGATATATGCACCAGATGGGGACGTAGGTTGGCATTTAAGACAGCCGATGTGATGGGCAGGCATGGAGCGAATGATGAGCCTCCATGCTGGCATATCATTTATGCTTTGACCTGAGgtagggttttcttcattggtgctctttcgggaaggttcccttgttcatttgatcttccatttctgga
aacgtttgcacagagtcaaagctcggctctgtctcagGTTTGAATTCGTGGTCTCTTGAAAGAGGCGTTGTTGTGACAGCGAAACTCCTTCTTGTGAACAGGTTAATGTGCATGCAAAGCATGGCTTAGAGCTGCCACGCTTGCATTCAGAAGACGACTTCTGCTCTCTGGATAGTTCTGCAGGAGCGGCCACGAGTGAT
ATCTTCTGTTGTTGGTCATGCATGGGATCTACCAGAAAATACGTTTGGTGCAGCCTATGCCAAATTTATGGGTTCTAGGAACTTCTCTCCTGATGATCGCCCCCCTGTTCGTTTTATGGATACAGAAGAGCTTGCATATGTTGCAACTCGAGCCAGGGAGATTCATGATTTTTGGCATGTATTGTTTAATCTCCCAACAA
ACCTGTTAGGGGAATCAGCTCTTAAAGTTGTGGAATTTCAGCAGTTGTATTTGCCAATGTGCCTCCTTTCCACAATAGGTGGTTCAGTACGAATGAAGACAAAACAACGGGAACACTTTTTTAAGTACTATTTTCCTTGGGCTGTCAGAGCTGGGATGAGCTGCACAGATATCATGTCGATATATTATGAAAAGCATTTT
GATGAGGACTTGGAACTCGTACGGAACCGATGGGGCATATTACCTGCTTCCGACTTTAAGAATTTAAGACCACTTTCGAATTCATAGTAAAATCAATGG
Intron 4 GTAGGGTTTT ... GTTTGCACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 75.14 | 9.9 | 14 | 27.8 |
| A2 | 93.75 | 2.5 | 11 | 36 |
| A3 | 85 | 3.8 | 7 | 19 |
| A4 | 72.57 | 13.1 | 6 | 32.4 |
| A5 | 85.11 | 3.5 | 5 | 19 |
| A6 | 69.16 | 52.8 | 24 | 111 |
| A7 | 74.3 | 42.9 | 25 | 112.1 |
| A8 | 76.91 | 25.9 | 18 | 75.6 |
| A9 | 75.55 | 32.6 | 23 | 90 |
| A10 | 70.49 | 46 | 38 | 99.9 |
>TRINITY_DN45043_c0_g1_i37 from sample A8 / Example spliced isoformCCAAGCTCAATGCTTGTCATGCCAAGTCTTATACATTGCGAAGGTGTTGGTGATGTCTCGTGGCATAAATATTTGACCAATGTAAAACTTGAAACCATATGATATATGCACCAGATGGGGACGTAGGTTGGCATTTAAGACAGCCGATGTGATGGGCAGGCATGGAGCGAATGATGAGCCTCCATGCTGGCATATCATTT
ATGCTTTGACCTGAGAGTCAAAGCTCGGCTCTGTCTCAGGTTTGAATTCGTGGTCTCTTGAAAGAGGCGTTGTTGTGACAGCGAAACTCCTTCTTGTGAACAGGTTAATGTGCATGCAAAGCATGGCTTAGAGCTGCCACGCTTGCATTCAGAAAACGACTTCTGCTCTCTGGGTAAGCTCATGGCTCCCTATGGATTCG
TTTTACTCTGTGGAGAAGCGACCTTGAAGATGGTCTTGGTTCTTGTTTGTAAGTCATTATGGTTTGGTGTTCTTATCACCGGCTTGCTTGCGCTTTCAGCAGAGAGAGAAGGAAGTCATAGTTTCCTTAGTAGGGTTGACCCTCTTTCGATTTTCATTGCAATCTCTTCCCCATTGGGGTACGTAACTCAGAAAAATGAT
TTGTAAATGTTTTTACAGCCATTGTGTTATAGATTAAAGCTTAACTGTGTTTGTTTTCACTGAAGCCTAAGTTTTCTGCAATTTTAACTGTATATTTCCC
>TRINITY_DN45043_c0_g1_i18 from sample A8 / Example unspliced isoform:CCAAGCTCAATGCTTGTCATGCCAAGTCTTATACATTGCGAAGGTGTTGGTGATGTCTCGTGGCATAAATATTTGACCAATGTAAAACTTGAAACCATATGATATATGCACCAGATGGGGACGTAGGTTGGCATTTAAGACAGCCGATGTGATGGGCAGGCATGGAGCGAATGATGAGCCTCCATGCTGGCATATCATTT
ATGCTTTGACCTGAGgtagggttttcttcattgatgttctttcgggaaagttcccttgttcatttgattttccatttctggaaacgtttgcacagAGTCAAAGCTCGGCTCTGTCTCAGGTTTGAATTCGTGGTCTCTTGAAAGAGGCGTTGTTGTGACAGCGAAACTCCTTCTTGTGAACAGGTTAATGTGCATGCAAA
GCATGGCTTAGAGCTGCCACGCTTGCATTCAGAAGACGACTTCTGCTCTCTGGGTCTTGGATGCTTGCAAACAACCACTATGCAATGATGTACCTTGAGAGTGGTATTATCTAGATCAAATACTGGAGAAGGGCTGAGGGGATTTTGGTTCACATACATTTTTGAGGAAGAAAAGAGCATTATGCATATTTTTGAAGGAC
ATGCTCGGGTGCCTTTAAAGGGATGGCAGCAGGCAGCAGTAGCTGTTGGATCAGCTCTAGGGGCCCTGATGAACCCAGCGAGAGCAGATCTTATTGCTGCACTTGATAGTTCTGCAGGAGCGGCCACGAGTGATATCTTCTGTTGTTGGTCATGCATGGGATCTACCAGAAAATACGTTTGGTGCAGCCTATGCCAAATT
TATGGGTTCTAGGAACTTCTCTCCTGATGATCGCCCCCCTGTTCGTTTTATGGATACAGAAGAGCTTGCATATGTTGCAACTCGAGCCAGGGAGATTCATGATTTTTGGCATGTATTGTTTAATCTCCCAACAAACCTGTTAGGGGAATCAGCTCTTAAAGTTGTGGAATTTCAGCAGTTGTATTTGCCAATGTGCCTCC
TTTCCACAATAGGTGGTTCAGTACGAATGAAGACAAAACAACGGGAACACTTTTTTAAGTACTATTTTCCTTGGGCTGTCAGAGCTGGGATGAGCTGCACAGATATCATGTCGATATATTATGAAAAGCATTTTGATGAGGACTTGGAACTCGTACGGAACCGATGGGGCATATTACCTGCTTCCGACTTTAAGAATTTA
AGACCACTTTCGAATTCATAGTAAAATCAATGGTATGTCTAAGCAATCATTGGTTTTAGTTTCACAAAAAAGCAATTGTTAAGGATCTAGTGGTTCTCTTGTTAGCCTAGATTAACTGTATTAGTATATGATTTGTTTTGGTAGGATGTGGTTGTGGAGATTGATTTTCTGGGCTCAGGGCTCGGGACTGCGACAACTTT
ATTATCCTAGTTGTTGACGCTTCGGACTCTACTAGCATAGTCCATCCTCATGACAAAGGATGGATGGTTGAGGAAGAAGCCATAAAATTGACTATAAAGGACAGGGAACCCAAAATCTGTCAAGCCATTAAGCAACCCTCGTTTTCAGAAGTAGACCCTAAAACCAACCTTTGTAAAATATACTCATCCTTCCAGTGTTT
CATTCATTTGATAATTTATAGTTGTGAAGTCTGTAGATTAAGCTTTTCAATTTCATATTAATACTTGACTGATATATTACTGGTGTTTTGAATTTATGCTAAAGAATTTTTTTATTGTTAGCTGCCACCTTATGATATACACATCCTTCCAG
Intron 5 GTTAATGTGC ... TCTCTGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 53.66 | 19 | 32 | 12 |
| A2 | 51.79 | 27 | 41 | 17 |
| A3 | 41.18 | 25 | 24 | 11 |
| A4 | 49.38 | 41 | 47 | 33 |
| A5 | 48.78 | 21 | 25 | 15 |
| A6 | 57.78 | 118 | 193 | 130 |
| A7 | 58.76 | 100 | 167 | 118 |
| A8 | 60 | 52 | 102 | 54 |
| A9 | 53.02 | 105 | 140 | 97 |
| A10 | 53.25 | 90 | 114 | 91 |
>TRINITY_DN106591_c0_g1_i14 from sample A4 / Example spliced isoformGCCAAGTCTTATACATTGCGAAGGTGTTGGTGATGTCTCGTGGCATAAATATTTGACCTTATGTAAAACTTGAAACCATATGATATATGCACCAGATGGGGACGTAGGTTGGCATTTAAGACAGCCGATGTGATGGGCAGGCATGGAGCGAATGATGAGCCTCCATGCTGGCATATCATTTATGCTTTGACCTGAGGTAG
GGTTTTCTTCATTGGTGCTCTTTCGGGAAGGTTCCCTTGTTCATTTGATCTTCCATTTCTGGAAACGTTTGCACAGAGTCACAGCTCGGCTCTGTCTTCAGGTTTGAATTCGTGGTCCCTTGAAAGAGGCGTTGTTGTGACAGCGAAACTCCTTCTTGTGAACAGGTCTTGGATGCTTGCAAACAACCACTATGCAATGA
TGTACATTGAGAGTGGTATTATCTAGATCAAATACTGGAGAAGGGCTGAGGGGCTTTTGGTTCACATACTTTTTTGAGGAAGAAAAGAGCATTATGCATATTTTTGAAGGACATGCTCGGGTGCCTTTAAAGGGATGGCAGCAGGCAGCAGTAGCTGTTGGATCAGCTCTAGGGGCCCTGATGAACCCAGCGAGAGCAGA
TCTTATTGCTGCACTTGGTGAGACAACTGGCAAACCAGCTTTTCAGAATCTTCTTTATAGGATGAAAAGAAGTCATGAGGGAAGAATAGTTCTGCAGGAGCGGCCACGAGTGATATCTTCTGTTGTTGGTCATGCATGGGATCTACCAGAAAATACGTTTGGTGCAGCCTATGCCAAATTTATGGGTTCTAGGAACTTCT
CTCCTGATGATCGCCCCCCTGTTCGTTTTATGGATACAGAAGAGCTTGCATATGTTGCAACTCGAGCCAGGGAGATTCATGATTTTTGGCATGTATTGTTTAATCTCCCAACAAACCTGTTAGGGGAATCAGCTCTTAAAGTTGTGGAATTTCAGCAGTTGTATTTGCCAATGTGCCTCCTTTCCACAATAGGTGGTTCA
GTACGAATGAAGACAAAACAACGGGAACACTTTTTTAAGTACTATTTTCCTTGGGCTGTCAGAGCTGGGATGAGCTGCACAGATATCATGTCGATATATTATGAAAAGCATTTTGATGAGGACTTGGAACTCGTACGGAACCGATGGGGCATATTACCTGCTTCCGACTTTAAGAATTTAAGACCACTTTCGAATTCATA
GTAAAATCAATGGTATGTCTAAGCAATCATTGGTTTTAGTTTCACAAAAAAGCAATTGTTAAGGATCTAGTGGTTCTCTTGTTAGCCTAGATTAACTGTATATGATTTGTTTTGGTAGGATATGGTTGTGGAGATCGATTTTCTGGGCTCAGGGCTTAGGACTGCGACAACTTCAAAGTTTATTTTTATAGATCTGATCC
GATCCTTCTTATATTCTAAATCTGTTCATGCAAGCTTCTTAATGATAGGAAATCTATATGCTGTGATTTTTATTCATAAATATGTTGATTATGTTCATTAAAAATCTGATTGAGAAACTAACAGATAGATCCATTTCTGTTGAATTAAATTCTAATAAATCTTATATTTCCAAGTTCGATATACAGTACTATTTTATATA
TGCTGCATTACCTGTTTTAAATTCTGAATATGTTCATTGGCAGAATTATTTAGTCATGACTCATGGGTTTTAAACCTTATTATTTTCATCATTATTTAGTATTGCTTTTAATTCCAAAATTATAATTACTTATCATATCATAGGTTGTTTAGCCTATGGAGAAACCTCCCATTATTTCTAAATAGGGAGAGGGTCTTAGA
TCTGGATCCCTAGACCAAGTGCCTAAACCCTAGATAGGTTATT
>TRINITY_DN106591_c0_g1_i7 from sample A4 / Example unspliced isoform:GCCAAGTCTTATACATTGCGAAGGTGTTGGTGATGTCTCGTGGCATAAATATTTGACCTTATGTAAAACTTGAAACCATATGATATATGCACCAGATGGGGACGTAGGTTGGCATTTAAGACAGCCGATGTGATGGGCAGGCATGGAGCGAATGATGAGCCTCCATGCTGGCATATCATTTATGCTTTGACCTGAGGTAG
GGTTTTCTTCATTGGTGCTCTTTCGGGAAGGTTCCCTTGTTCATTTGATCTTCCATTTCTGGAAACGTTTGCACAGAGTCACAGCTCGGCTCTGTCTTCAGGTTTGAATTCGTGGTCCCTTGAAAGAGGCGTTGTTGTGACAGCGAAACTCCTTCTTGTGAACAGgttaatgtgcatgcaaagcatggcttagagctgcc
acgcttgcattcagaaaacgacttctgctctctggcagGTCTTGGATGCTTGCAAACAACCACTATGCAATGATGTACATTGAGAGTGGTATTATCTAGATCAAATACTGGAGAAGGGCTGAGGGGCTTTTGGTTCACATACTTTTTTGAGGAAGAAAAGAGCATTATGCATATTTTTGAAGGACATGCTCGGGTGCCTT
TAAAGGGATGGCAGCAGGCAGCAGTAGCTGTTGGATCAGCTCTAGGGGCCCTGATGAACCCAGCGAGAGCAGATCTTATTGCTGCACTTGGTGAGACAACTGGCAAACCAGCTTTTCAGAATCTTCTTTATAGGATGAAAAGAAGTCATGAGGGAAGAATAGTTCTGCAGGAGCGGCCACGAGTGATATCTTCTGTTGTT
GGTCATGCATGGGATCTACCAGAAAATACGTTTGGTGCAGCCTATGCCAAATTTATGGGTTCTAGGAACTTCTCTCCTGATGATCGCCCCCCTGTTCGTTTTATGGATACAGAAGAGCTTGCATATGTTGCAACTCGAGCCAGGGAGATTCATGATTTTTGGCATGTATTGTTTAATCTCCCAACAAACCTGTTAGGGGA
ATCAGCTCTTAAAGTTGTGGAATTTCAGCAGTTGTATTTGCCAATGTGCCTCCTTTCCACAATAGGTGGTTCAGTACGAATGAAGACAAAACAACGGGAACACTTTTTTAAGTACTATTTTCCTTGGGCTGTCAGAGCTGGGATGAGCTGCACAGATATCATGTCGATATATTATGAAAAGCATTTTGATGAGGACTTGG
AACTCGTACGGAACCGATGGGGCATATTACCTGCTTCCGACTTTAAGAATTTAAGACCACTTTCGAATTCATAGTAAAATCAATGGTATGTCTAAGCAATCATTGGTTTTAGTTTCACAAAAAAGCAATTGTTAAGGATCTAGTGGTTCTCTTGTTAGCCTAGATTAACTGTATATGATTTGTTTTGGTAGGATATGGTT
GTGGAGATCGATTTTCTGGGCTCAGGGCTTAGGACTGCGACAACTTCAAAGTTTATTTTTATAGATCTGATCCGATCCTTCTTATATTCTAAATCTGTTCATGCAAGCTTCTTAATGATAGGAAATCTATATGCTGTGATTTTTATTCATAAATATGTTGATTATGTTCATTAAAAATCTGATTGAGAAACTAACAGATA
GATCCATTTCTGTTGAATTAAATTCTAATAAATCTTATATTTCCAAGTTCGATATACAGTACTATTTTATATATGCTGCATTACCTGTTTTAAATTCTGAATATGTTCATTGGCAGAATTATTTAGTCATGACTCATGGGTTTTAAACCTTATTATTTTCATCATTATTTAGTATTGCTTTTAATTCCAAAATTATAATT
ACTTATCATATCATAGGTTGTTTAGCCTATGGAGAAACCTCCCATTATTTCTAAATAGGGAGAGGGTCTTAGATCTGGATCCCTAGACCAAGTGCCTAAACCCTAGATAGGTTATT
Intron 6 GTAGGGTTTT ... CTGTCTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 66.13 | 11.3 | 13 | 21.5 |
| A2 | 84.77 | 7.1 | 11 | 35.8 |
| A3 | 54.87 | 24.8 | 6.9 | 30 |
| A4 | 66.17 | 20.3 | 7.4 | 39.5 |
| A5 | 68.25 | 10.4 | 5 | 21.8 |
| A6 | 53.28 | 95.6 | 23.7 | 104.8 |
| A7 | 61.64 | 70.1 | 25.4 | 109.3 |
| A8 | 54 | 49.6 | 18 | 55.8 |
| A9 | 56.7 | 66.8 | 22.7 | 84.9 |
| A10 | 62.64 | 56.9 | 37.5 | 93.3 |
>TRINITY_DN120210_c0_g1_i17 from sample A1 / Example spliced isoformTAAAACTTGAAACCATATGATATATGCACCAGATGGGGACGTAGGTTGGCATTTAAGACAGCCGATGTGATGGGCAGGCATGGAGCGAATGATGAGCCTCCATGCTGGCATATCATTTATGCTTTGACCTGAGGTTTGAATTCGTGGTCCCTTGAAAGAGGCGTTGTTGTGACAGCGAAACTCCTTCTTGTGAACAGGTT
AATGTGCATGCAAAGCATGGCTTAGAGCTGCCACGCTTGCATTCAGAAAACGACTTCTGCTCTCTGGGTAAGCTCATGGCTCCCTATGGATTCGTTTTACTCTGTGGAGAAGCGACCTTGAAGATGGTCTTGGTTCTTGTTTGTAAGTCATTATGGTTTGGTGTTCTTATCACCGGCTTGCTTGCGCTTTCAGCAGAGAG
AGAAGGAAGTCATAGTTTCCTTAGTAGGGTTGACCCTCTTTCGATTTTCATTGCAATCTCTTCCCCATTGGGGTCTTGGATGCTTGCAAACAACCACTATGCAATGATGTACCTTGAGAGTGGTATTATCTAGATCAAATACTGGAGAAGGGCTGAGGGGCTTTTGGTTCACATACTTTTTTGAGGAAGAAAAGAGCATT
ATGCATATTTTTGAAGGACATGCTCGGGTGCCTTTAAAGGGATGGCAGCAGGCAGCAGTAGCTGTTGGATCAGCTCTAGGGGCCCTGATGAACCCAGCGAGAGCAGATCTTATTGCTGCACTTGGTGAGACAACTGGCAAACCAGCTTTTCAGAATCTTCTTTATAGGATGAAAAGAAGTCATGAGGGAAGAATAGTTCT
GCAGGAGCGGCCACGAGTGATATCTTCTGTTGTTGGTCATGCATGGGATCTACCAGAAAATACGTTTGGTGCAGCCTATGCCAAATTTATGGGTTCTAGGAACTTCTCTCCTGATGATCGCCCCCCTGTTCGTTTTATGGATACAGAAGAGCTTGCATATGTTGCAACTCGAGCCAGGGAGATTCATGATTTTTGGCATG
TATTGTTTAATCTCCCAACAAACCTGTTAGGGGAATCAGCTCTTAAAGTTGTGGAATTTCAGCAGTTGTATTTGCCAATGTGCCTCCTTTCCACAATAGGTGGTTCAGTACGAATGAAGACAAAACAACGGGAACACTTTTTTAAGTACTATTTTCCTTGGGCTGTCAGAGCTGGGATGAGCTGCACAGATATCATGTCG
ATATATTATGAAAAGCATTTTGATGAGGACTTGGAACTCGTACGGAACCGATGGGGCATATTACCTGCTTCCGACTTTAAGAATTTAAGACCACTTTCGAATTCATAGTAAAATCAATGGATGTGGTTGTGGAGATTGATTTTCTGGGCTCAGGGCTCGGGACTGCGACAACTTTATTATCCTAGTTGTTGACGCTTCGG
ACTCTACTAGCATAGTCCATCCTCATGACAAAGGATGGATGGTTGAGGAAGAAGCCATAAAATTGACTATAAAGGACAGGGAACCCAAAATCTGTCAAGCCATTAAGCAACCCTCGTTTTCAGAAGTAGACCCTAAAACCAACCTTTGTAAAATATACTCATCCTTCCAGTGTTTCATTCATTTGATAATTTATAGTTGT
GAAGTCTGTAGATTAAGCTTTTCAATTTCATATTAATACTTGACTGATATATTACTGGTGTTTTGAATTTATGCTAAAGAATTTTTTTATTGTTAGCTGC
>TRINITY_DN120210_c0_g1_i24 from sample A1 / Example unspliced isoform:TAAAACTTGAAACCATATGATATATGCACCAGATGGGGACGTAGGTTGGCATTTAAGACAGCCGATGTGATGGGCAGGCATGGAGCGAATGATGAGCCTCCATGCTGGCATATCATTTATGCTTTGACCTGAGgtagggttttcttcattggtgctctttcgggaaggttcccttgttcatttgatcttccatttctgga
aacgtttgcacagagtcacagctcggctctgtcttcagGTTTGAATTCGTGGTCCCTTGAAAGAGGCGTTGTTGTGACAGCGAAACTCCTTCTTGTGAACAGGTCTTGGATGCTTGCAAACAACCACTATGCAATGATGTACCTTGAGAGTGGTATTATCTAGATCAAATACTGGAGAAGGGCTGAGGGGCTTTTGGTTC
ACATACTTTTTTGAGGAAGAAAAGAGCATTATGCATATTTTTGAAGGACATGCTCGGGTGCCTTTAAAGGGATGGCAGCAGGCAGCAGTAGCTGTTGGATCAGCTCTAGGGGCCCTGATGAACCCAGCGAGAGCAGATCTTATTGCTGCACTTGGTGAGACAACTGGCAAACCAGCTTTTCAGAATCTTCTTTATAGGAT
GAAAAGAAGTCATGAGGGAAGAATAGTTCTGCAGGAGCGGCCACGAGTGATATCTTCTGTTGTTGGTCATGCATGGGATCTACCAGAAAATACGTTTGGTGCAGCCTATGCCAAATTTATGGGTTCTAGGAACTTCTCTCCTGATGATCGCCCCCCTGTTCGTTTTATGGATACAGAAGAGCTTGCATATGTTGCAACTC
GAGCCAGGGAGATTCATGATTTTTGGCATGTATTGTTTAATCTCCCAACAAACCTGTTAGGGGAATCAGCTCTTAAAGTTGTGGAATTTCAGCAGTTGTATTTGCCAATGTGCCTCCTTTCCACAATAGGTGGTTCAGTACGAATGAAGACAAAACAACGGGAACACTTTTTTAAGTACTATTTTCCTTGGGCTGTCAGA
GCTGGGATGAGCTGCACAGATATCATGTCGATATATTATGAAAAGCATTTTGATGAGGACTTGGAACTCGTACGGAACCGATGGGGCATATTACCTGCTTCCGACTTTAAGAATTTAAGACCACTTTCGAATTCATAGTAAAATCAATGGTATGTCTAAGCAATCATTGGTTTTAGTTTCACAAAAAAGCAATTGTTAAG
GATCTAGTGGTTCTCTTGTTAGCCTAGATTAACTGTATATGATTTGTTTTGGTAGGATATGGTTGTGGAGATCGATTTTCTGGGCTCAGGGCTTAGGACTGCGACAACTTCAAAGTTTATTTTTATAGATCTGATCCGATCCTTCTTATATTCTAAATCTGTTCATGCAAGCTTCTTAATGATAGGAAATCTATATGCTG
TGATTTTTATTCATAAATATGTTGATTATGTTCATTAAAAATCTGATTGAGAAACTAACAGATAGATCCATTTCTGTTGAATTAAATTCTAATAAATCTTATATTTCCAAGTTCGATATACAGTACTATTTTATATATGCTGCATTACCTGTTTTAAATTCTGGATATGGTCATTGGCAGAATTATTTAGTCATGACTCA
TGGGTTTTAAATCTTATTATTTTCATCATTATTTAGTATTGCTTTTAATTCCAAAATTATAATTACTTATCATATCATAGGTTGTTTAGCCTATGGAGAAACCTCCCATTATTTCTAAATAGGGAGAGGGTCTTAGATGTGGATCCCTAGACCTAGTGCCT
Intron 7 GTAAGCTCAT ... GCGCTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 78.56 | 5.7 | 18.7 | 23 |
| A2 | 69.89 | 9.8 | 27.9 | 17.4 |
| A3 | 68.41 | 7 | 17 | 13.1 |
| A4 | 65.53 | 13.7 | 34.3 | 17.2 |
| A5 | 31.99 | 13.2 | 11.3 | 1 |
| A6 | 35.54 | 82.3 | 47.4 | 43.1 |
| A7 | 32.67 | 71.8 | 39.8 | 29 |
| A8 | 39.03 | 28.6 | 15.4 | 20.9 |
| A9 | 39.47 | 44.5 | 32.1 | 24.8 |
| A10 | 40.32 | 44.4 | 36.1 | 22.4 |
>TRINITY_DN119699_c3_g3_i6 from sample A2 / Example spliced isoformGCAGCCGATGTGATGGGCAGGCATGGAGCGAATGATGAGCCTCCATGCTGGCATATCATTTATGCTTTGACCTGAGGTAGGGTTTTCTTCATTGATGTTCTTTCGGGAAAGTTCCCTTGTTCATTTGATTTTCCATTTCTGGAAACGTTTGCACAGAGTCAAAGCTCGGCTCTGTCTCAGGTTTGAATTCGTGGTCTCTT
GAAAGAGGCGTTGTTGTGACAGCGAAACTCCTTCTTGTGAACAGGTTAATGTGCATGCAAAGCATGGCTTAGAGCTGCCACGCTTGCATTCAGAAGACGACTTCTGCTCTCTGGCAGAGAGAGAAGGAAGTCATAGTTTCCTTAGTAGGGTTGACCCTCTTTCGATTTTCATTGCAATCTCTTCCCCATTGGGATAGTTC
TGCAGGAGCGGCCACGAGTGATATCTTCTGTTGTTGGTCATGCATGGGATCTACCAGAAAATACGTTTGGTGCAGCCTATGCCAAATTTATGGGTTCTAGGAACTTCTCTCCTGATGATCGCCCCCCTGTTCGTTTTATGGATACAGAAGAGCTTGCATATGTTGCAACTCGAGCCAGGGAGATTCATGATTTTTGGCAT
GTATTGTTTAATCTCCCAACAAACCTGTTAGGGGAATCAGCTCTTAAAGTTGTGGAATTTCAGCAGTTGTATTTGCCAATGTGCCTCCTTTCCACAATAGGTGGTTCAGTACGAATGAAGACAAAACAACGGGAACACTTTTTTAAGTACTATTTTCCTTGGGCTGTCAGAGCTGGGATGAGCTGCACAGATATCATGTC
GATATATTATGAAAAGCATTTTGATGAGGACTTGGAACTCGTACGGAACCGATGGGGCATATTACCTGCTTCCGACTTTAAGAATTTAAGACCACTTTCGAATTCATAGTAAAATCAATGG
>TRINITY_DN119699_c3_g3_i12 from sample A2 / Example unspliced isoform:GCAGCCGATGTGATGGGCAGGCATGGAGCGAATGATGAGCCTCCATGCTGGCATATCATTTATGCTTTGACCTGAGGTAGGGTTTTCTTCATTGGTGCTCTTTCGGGAAGGTTCCCTTGTTCATTTGATCTTCCATTTCTGGAAACGTTTGCACAGAGTCACAGCTCGGCTCTGTCTTCAGGTTTGAATTCGTGGTCCCT
TGAAAGAGGCGTTGTTGTGACAGCGAAACTCCTTCTTGTGAACAGGTATTGTTTTGCTTCAGGCTGGGCTCTGTTCTTTAAGATAGCTCTGTGTTTTGATTTATATGACCATACAAATCGTTTGACTCTGTTTTGCGTTGTGAGGTTAATGTGCATGCAAAGCATGGCTTAGAGCTGCCACGCTTGCATTCAGAAAACGA
CTTCTGCTCTCTGGgtaagctcatggctccctatggattcgttttactctgtggagaagcgaccttgaagatggtcttggttcttgtttgtaagtcattatggtttggtgttcttatcaccggcttgcttgcgctttcagCAGAGAGAGAAGGAAGTCATAGTTTCCTTAGTAGGGTTGACCCTCTTTCGATTTTCATTG
CAATCTCTTCCCCATTGGGATAGTTCTGCAGGAGCGGCCACGAGTGATATCTTCTGTTGTTGGTCATGCATGGGATCTACCAGAAAATACGTTTGGTGCAGCCTATGCCAAATTTATGGGTTCTAGGAACTTCTCTCCTGATGATCGCCCCCCTGTTCGTTTTATGGATACAGAAGAGCTTGCATATGTTGCAACTCGAG
CCAGGGAGATTCATGATTTTTGGCATGTATTGTTTAATCTCCCAACAAACCTGTTAGGGGAATCAGCTCTTAAAGTTGTGGAATTTCAGCAGTTGTATTTGCCAATGTGCCTCCTTTCCACAATAGGTGGTTCAGTACGAATGAAGACAAAACAACGGGAACACTTTTTTAAGTACTATTTTCCTTGGGCTGTCAGAGCT
GGGATGAGCTGCACAGATATCATGTCGATATATTATGAAAAGCATTTTGATGAGGACTTGGAACTCGTACGGAACCGATGGGGCATATTACCTGCTTCCGACTTTAAGAATTTAAGACCACTTTCGAATTCATAGTAAAATCAATGGTATGTCTAAGCAATCATTGGTTTTAGTTTCACAAAAAAGTAATTGTTAAGGAT
CTAGTGGTTCTCTTGTTAGCCTAGATTAACTGTATATGATTTGTTTTGGTAGGATATGGTTGTGGAGATCGATTTTCTGGGCTCAGGGCTTAGGACTGCGACAACTTCAAAGTTTATTTTTATAGATCTGATCCGATCCTTCTTATATTCTAAATCTGTTCATGCA
Intron 8 GTATGTCTAA ... GTTTTGGTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 74.51 | 20.2 | 68 | 49.5 |
| A2 | 64.27 | 21.6 | 45 | 32.6 |
| A3 | 50.26 | 34 | 33 | 35.4 |
| A4 | 45.45 | 36.2 | 32 | 28.2 |
| A5 | 53.97 | 18.7 | 22 | 21.8 |
| A6 | 52.93 | 503.1 | 558.6 | 571.4 |
| A7 | 51.91 | 367.2 | 420.6 | 371.3 |
| A8 | 51.46 | 489.3 | 501.6 | 534.3 |
| A9 | 54.47 | 351.2 | 421 | 418.6 |
| A10 | 54.07 | 175.7 | 223.4 | 190.1 |
>TRINITY_DN120210_c0_g1_i2 from sample A1 / Example spliced isoformTAAAACTTGAAACCATATGATATATGCACCAGATGGGGACGTAGGTTGGCATTTAAGACAGCCGATGTGATGGGCAGGCATGGAGCGAATGATGAGCCTCCATGCTGGCATATCATTTATGCTTTGACCTGAGGTTTGAATTCGTGGTCCCTTGAAAGAGGCGTTGTTGTGACAGCGAAACTCCTTCTTGTGAACAGGTT
AATGTGCATGCAAAGCATGGCTTAGAGCTGCCACGCTTGCATTCAGAAAACGACTTCTGCTCTCTGGGTAAGCTCATGGCTCCCTATGGATTCGTTTTACTCTGTGGAGAAGCGACCTTGAAGATGGTCTTGGTTCTTGTTTGTAAGTCATTATGGTTTGGTGTTCTTATCACCGGCTTGCTTGCGCTTTCAGCAGAGAG
AGAAGGAAGTCATAGTTTCCTTAGTAGGGTTGACCCTCTTTCGATTTTCATTGCAATCTCTTCCCCATTGGGGTCTTGGATGCTTGCAAACAACCACTATGCAATGATGTACCTTGAGAGTGGTATTATCTAGATCAAATACTGGAGAAGGGCTGAGGGGCTTTTGGTTCACATACTTTTTTGAGGAAGAAAAGAGCATT
ATGCATATTTTTGAAGGACATGCTCGGGTGCCTTTAAAGGGATGGCAGCAGGCAGCAGTAGCTGTTGGATCAGCTCTAGGGGCCCTGATGAACCCAGCGAGAGCAGATCTTATTGCTGCACTTGGTGAGACAACTGGCAAACCAGCTTTTCAGAATCTTCTTTATAGGATGAAAAGAAGTCATGAGGGAAGAATAGTTCT
GCAGGAGCGGCCACGAGTGATATCTTCTGTTGTTGGTCATGCATGGGATCTACCAGAAAATACGTTTGGTGCAGCCTATGCCAAATTTATGGGTTCTAGGAACTTCTCTCCTGATGATCGCCCCCCTGTTCGTTTTATGGATACAGAAGAGCTTGCATATGTTGCAACTCGAGCCAGGGAGATTCATGATTTTTGGCATG
TATTGTTTAATCTCCCAACAAACCTGTTAGGGGAATCAGCTCTTAAAGTTGTGGAATTTCAGCAGTTGTATTTGCCAATGTGCCTCCTTTCCACAATAGGTGGTTCAGTACGAATGAAGACAAAACAACGGGAACACTTTTTTAAGTACTATTTTCCTTGGGCTGTCAGAGCTGGGATGAGCTGCACAGATATCATGTCG
ATATATTATGAAAAGCATTTTGATGAGGACTTGGAACTCGTACGGAACCGATGGGGCATATTACCTGCTTCCGACTTTAAGAATTTAAGACCACTTTCGAATTCATAGTAAAATCAATGGATATGGTTGTGGAGATCGATTTTCTGGGCTCAGGGCTTAGGACTGCGACAACTTCAAAGTTTATTTTTATAGATCTGATC
CGATCCTTCTTATATTCTAAATCTGTTCATGCAAGCTTCTTAATGATAGGAAATCTATATGCTGTGATTTTTATTCATAAATATGTTGATTATGTTCATTAAAAATCTGATTGAGAAACTAACAGATAGATCCATTTCTGTTGAATTAAATTCTAATAAATCTTATATTTCCAAGTTCGATATACAGTACTATTTTATAT
ATGCTGCATTACCTGTTTTAAATTCTGGATATGGTCATTGGCAGAATTATTTAGTCATGACTCATGGGTTTTAAATCTTATTATTTTCATCATTATTTAGTATTGCTTTTAATTCCAAAATTATAATTACTTATCATATCATAGGTTGTTTAGCCTATGGAGAAACCTCCCATTATTTCTAAATAGGGAGAGGGTCTTAG
ATGTGGATCCCTAGACCTAGTGCCT
>TRINITY_DN120210_c0_g1_i6 from sample A1 / Example unspliced isoform:TTTGGGCTTTATGGCCAACACCACCACAAGTGTAGCACCTTTGTGTGTGACAGTTAGCAGCGAGTATGAGGGTAAAAACACTGTAAAAGTAATATTCATTTGTAAATTCTTGCCTGACAGAGTACACAATATTTTGTCCCAAAGCAGGTCTTGGATGCTTGCAAACAACCACTATGCAATGATGTACCTTGAGAGTGGTA
TTATCTAGATCAAATACTGGAGAAGGGCTGAGGGGCTTTTGGTTCACATACTTTTTTGAGGAAGAAAAGAGCATTATGCATATTTTTGAAGGACATGCTCGGGTGCCTTTAAAGGGATGGCAGCAGGCAGCAGTAGCTGTTGGATCAGCTCTAGGGGCCCTGATGAACCCAGCGAGAGCAGATCTTATTGCTGCACTTGG
TGAGACAACTGGCAAACCAGCTTTTCAGAATCTTCTTTATAGGATGAAAAGAAGTCATGAGGGAAGAATAGTTCTGCAGGAGCGGCCACGAGTGATATCTTCTGTTGTTGGTCATGCATGGGATCTACCAGAAAATACGTTTGGTGCAGCCTATGCCAAATTTATGGGTTCTAGGAACTTCTCTCCTGATGATCGCCCCC
CTGTTCGTTTTATGGATACAGAAGAGCTTGCATATGTTGCAACTCGAGCCAGGGAGATTCATGATTTTTGGCATGTATTGTTTAATCTCCCAACAAACCTGTTAGGGGAATCAGCTCTTAAAGTTGTGGAATTTCAGCAGTTGTATTTGCCAATGTGCCTCCTTTCCACAATAGGTGGTTCAGTACGAATGAAGACAAAA
CAACGGGAACACTTTTTTAAGTACTATTTTCCTTGGGCTGTCAGAGCTGGGATGAGCTGCACAGATATCATGTCGATATATTATGAAAAGCATTTTGATGAGGACTTGGAACTCGTACGGAACCGATGGGGCATATTACCTGCTTCCGACTTTAAGAATTTAAGACCACTTTCGAATTCATAGTAAAATCAATGgtatgt
ctaagcaatcattggttttagtttcacaaaaaagcaattgttaaggatctagtggttctcttgttagcctagattaactgtatatgatttgttttggtagGATATGGTTGTGGAGATCGATTTTCTGGGCTCAGGGCTTAGGACTGCGACAACTTCAAAGTTTATTTTTATAGATCTGATCCGATCCTTCTTATATTCTA
AATCTGTTCATGCAAGCTTCTTAATGATAGGAAATCTATATGCTGTGATTTTTATTCATAAATATGTTGATTATGTTCATTAAAAATCTGATTGAGAAACTAACAGATAGATCCATTTCTGTTGAATTAAATTCTAATAAATCTTATATTTCCAAGTTCGATATACAGTACTATTTTATATATGCTGCATTACCTGTTTT
AAATTCTGGATATGGTCATTGGCAGAATTATTTAGTCATGACTCATGGGTTTTAAATCTTATTATTTTCATCATTATTTAGTATTGCTTTTAATTCCAAAATTATAATTACTTATCATATCATAGGTTGTTTAGCCTATGGAGAAACCTCCCATTATTTCTAAATAGGGAGAGGGTCTTAGATGTGGATCCCTAGACCTA
GTGCCT
Intron 9 GTATTGTTTG ... GCGTTGTGAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 41.38 | 26.9 | 24.9 | 13.2 |
| A2 | 37.61 | 36.2 | 20.9 | 22.5 |
| A3 | 48.45 | 24.2 | 29.4 | 15.3 |
| A4 | 42.72 | 37.8 | 32.9 | 22.8 |
| A5 | 39.63 | 22.3 | 20 | 9.1 |
| A6 | 20.25 | 171.1 | 56.3 | 30.5 |
| A7 | 19.27 | 150.3 | 51.5 | 20.2 |
| A8 | 17.16 | 93.4 | 27.9 | 10.8 |
| A9 | 21.62 | 126 | 50.9 | 18.3 |
| A10 | 23.81 | 108.3 | 38.5 | 29.3 |
>TRINITY_DN114112_c4_g2_i20 from sample A3 / Example spliced isoformGAACCTCGCTGGTGTGGAAAACAGAAGACCGTGCGGGCAGAAGGCCTGAAGCGATACCAGAAAGAGGTACTGGATTAACCTACACTATGCTCAAAGGCACAAGAACATGATACATCATGTCCTAAGTTTGAAAACGAAGACATAACATAACTTATGGTAAATATCAAACATAGAATATTATAAACAAAGCTTGTGTTAAG
ACCAATCTTTAAGTCTCATGCATAGCGTTAAGTTCCTATTAAAAAAAACTTATTACCCAAGCTTTATGGCAAGACCAAGCTCAACGCTTGTCATGTCAAGTCTCACACATAGCGAAGGTGTTGAATGTCTCGTGGCATAAACGTTGATCTTATGTAAACCTGAAACCATATGTTATATGCGCCTATAGTGGAGGTAGGTT
GGCATTTAAGATAGCCGATGTGATGGGCAGGCATGGAGCGAATGATGAGCCTCCATGCTGGCATATCATTTATGCTTTGACCTGAGGTAGGGTTTTCTTCATTGATGTTCTTTCGGGAAAGTTCCCTTGTTCATTTGATTTTCCATTTCTGGAAACGTTTGCACAGAGTCAAAGCTCGGCTCTGTCTCAGGTTTGAATTC
GTGGTCTCTTGAAAGAGGCGTTGTTGTGACAGCGAAACTCCTTCTTGTGAACAGGTTAATGTGCATGCAAAGCATGGCTTAGAGCTGCCACGCTTGCATTCAGAAGACGACTTCTGCTCTCTGGGTCTTGGATGCTTGCAAACAACCACTATGCAATGATGTACCTTGAGAGTGGTATTATCTAGATCAAATACTGGAGA
AGGGCTGAGGGGATTTTGGTTCACATACATTTTTGAGGAAGAAAAGAGCATTATGCATATTTTTGAAGGACATGCTCGGGTGCCTTTAAAGGGATGGCAGCAGGCAGCAGTAGCTGTTGGATCAGCTCTAGGGGCCCTGATGAACCCAGCGAGAGCAGATCTTATTGCTGCACTTGGTGAGACAACTGGCAAACCAGCAT
TTCAGAATCTTCTTTATAGGATGAAAAGAAGTCATGAGGGAAGAATAGTTCTGCAGGAGCGGCCACGAGTGATATCTTCTGTTGTTGGTCATGCATGGGATCTACCAGAAAATACGTTTGGTGCAGCCTATGCCAAATTTATGGGTTCTAGGAACTTCTCTCCTGATGATCGCCCCCCTGTTCGTTTTATGGATACAGAA
GAGCTTGCATATGTTGCAACTCGAGCCAGGGAGATTCATGATTTTTGGCATGTATTGTTTAATCTCCCAACAAACCTGTTAGGGGAATCAGCTCTTAAAGTTGTGGAATTTCAGCAGTTGTATTTGCCAATGTGCCTCCTTTCCACAATAGGTGGTTCAGTACGAATGAAGACAAAACAACGGGAACACTTTTTTAAGTA
CTATTTTCCTTGGGCTGTCAGAGCTGGGATGAGCTGCACAGATATCATGTCGATATATTATGAAAAGCATTTTGATGAGGACTTGGAACTCGTACGGAACCGATGGGGCATATTACCTGCTTCCGACTTTAAGAATTTAAGACCACTTTCGAATTCATAGTAAAATCAATGGTATGTCTAAGCAATCATTGGTTTTAGTT
TCACAAAAAAGTAATTGTTAAGGATCTAGTGGTTCTCTTGTTAGCCTAGATTAACTGTATATGATTTGTTTTGGTAGGATATGGTTGTGGAGATCGATTTTCTGGGCTCAGGGCTTAGGACTGCGACAACTTCAAAGTTTATTTTTATAGATCTGATCCGATCCTTCTTATATTCTAAATCTGTTCATGCAAGCTTCTTA
ATGATAGGAAATCTATATGCTGTGATTTTTATTCATAAATATGTTGATTATGTTCATTAAAAATCTGATTGAGAAACTAACAGATAGATCCATTTCTGTTGAATTAAATTCTTATAAATCTTATATTTCCAAGTTCGATATACAGTACTATTTTATATATGCTGCATTACCTGTTTTAAATTCTGGATATGGTCATTGGC
AGAATTATTTAGTCATGACTCATGGGTTTTAAATCTTATTATTTTCATCATTATTTAGTATTGCTTTTAATTCCAAAATTATAATTACTTATCATATCATAGGTTGTTTAGCCTATGGAGAAACCTCCCATTATTTCTAAATAGGGAGAGGGTCTTAGATGTGGATCCCTAGACCTAGTGCCTAAACCCTAGATAGGTTA
TTTAATATGTATTTATAAATTATATATATTAAATAAACCAAGTATTATTATATTACAAATCATGTTATATAAGATAAATCATATTATAAACCAAACTCCATTATTAAAGACCATAACATATCATATGCAATCGAATAGAGATCAAGCACTCATATTATCCATGCAAAACTCATACCAACTATAACTCTTTAAAAGTCAAC
>TRINITY_DN114112_c4_g2_i7 from sample A3 / Example unspliced isoform:GAACCTCGCTGGTGTGGAAAACAGAAGACCGTGCGGGCAGAAGGCCTGAAGCGATACCAGAAAGAGGTACTGGATTAACCTACACTATGCTCAAAGGCACAAGAACATGATACATCATGTCCTAAGTTTGAAAACGAAGACATAACATAACTTATGGTAAATATCAAACATAGAATATTATAAACAAAGCTTGTGTTAAG
ACCAATCTTTAAGTCTCATGCATAGCGTTAAGTTCCTATTAAAAAAAACTTATTACCCAAGCTTTATGGCAAGACCAAGCTCAACGCTTGTCATGTCAAGTCTCACACATAGCGAAGGTGTTGAATGTCTCGTGGCATAAACGTTGATCTTATGTAAACCTGAAACCATATGTTATATGCGCCTATAGTGGAGGTAGGTT
GGCATTTAAGATAGCCGATGTGATGGGCAGGCATGGAGCGAATGATGAGCCTCCATGCTGGCATATCATTTATGCTTTGACCTGAGGTAGGGTTTTCTTCATTGATGTTCTTTCGGGAAAGTTCCCTTGTTCATTTGATTTTCCATTTCTGGAAACGTTTGCACAGAGTCAAAGCTCGGCTCTGTCTCAGGTTTGAATTC
GTGGTCTCTTGAAAGAGGCGTTGTTGTGACAGCGAAACTCCTTCTTGTGAACAGgtattgtttgcttcaggctgggctctgttcttaaatatagctctgtgttttgatttatatgaccatactaatcgtttgactctgttttgcgttgtgagGTTAATGTGCATGCAAAGCATGGCTTAGAGCTGCCACGCTTGCATTCA
GAAGACGACTTCTGCTCTCTGGGTAAGCTCATGGCTCCCTATGGATTCGTTTTACTCTGTGGAGAAGCGACCTTGAAGATGGTCTTGGTTCTTGTTTGTAAGTCATTATGGTTTGGTGTTCTTATCACCGGCTTGCTTGCGCTTTCAGCAGAGAGAGAAGGAAGTCATAGTTTCCTTAGTAGGGTTGACCCTCTTTCGAT
TTTCATTGCAATCTCTTCCCCATTGGGGTACGTAACTCAGAAAAATGATTTGTAAATGTTTTTACAGCCATTGTGTTATAGATTAAAGCTTAACTGTGTTTGTTTTCACTGAAGCCTAAGTTTTCTGCAATTTTAACTGTATATTTCCCCATAGTTATTTTATGGACCATTCGGGCATGTTTTGAAATATGTTACCAGGC
CCTGTTTATCTGCCATTTTCTTTGCCTGGTAAACACTATATCAAATCTTGTACTTGTTACTGTACTAAGTTTTCTGTAGTTTTAAATGCATATTTCCGCATAGTTATTTTACGGACCGTTTGGGCATATTTTGAAATATTTTACCAGGCCCTGTTTATCTGGCATTTACTCAGGTCGGTAACGGTAACTACAATAACAAG
TGCAAGATTTGATATAGTTTTTAATGGGACCTAATTAGACAACATTAAGATTCAGTTATTGCAGGTGAGAAATATTTGATAGATCCATCTATTACAAAAGTTCATTTCCCAGCAAATATCGAGCACAGAAACTATAATAAACAGGAATCCATAGAGGACAAATAAAATCTATATATAATATATGTGTTTATTAGGTAATG
TCACATGAAGTTATATACAATGCCATTAATTAATTAATTCATTAATGAAGTGACATGACCTAATGAAGTAAGATGATTGCTGTTTATTATCATTC