NA ----> NA
Intron 1 GTACACAACA ... TTTTTTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 68.18 | 14 | 0 | 30 |
| A2 | 78.13 | 14 | 0 | 50 |
| A3 | 60.92 | 34 | 3 | 53 |
| A4 | 60.98 | 16 | 0 | 25 |
| A5 | 76.47 | 8 | 0 | 26 |
| A6 | 64.16 | 100 | 0 | 179 |
| A7 | 66.06 | 93 | 0 | 181 |
| A8 | 67.87 | 80 | 0 | 169 |
| A9 | 67.25 | 93 | 0 | 191 |
| A10 | 72.43 | 67 | 0 | 176 |
>TRINITY_DN107563_c0_g1_i3 from sample A3 / Example spliced isoformGTGAAATTGAAGGACATGTAGTGTATGATAACCATTTCCCATTGTTTTTACACGAATGGTTATTGCTTTCGCTGCGTTAAGGAGAGCGGGGAATAACTGTAATAGCTCCATGAAAACACTTCAGTAGTATTTAAGAAGGGAAATTCGCAGGCTATTATTTAAGAGGTCGAAATGGCAGTGCGAATAGCAGTGCAAAAGCT
GCTGGTACGTGCGGGGTTCAACACCTCCCCCATACAATCTTCATCTATTTTCTCAGAAATCTCCTCTACATCGAGTCCGATTAGCAGGCCTTCATTTGACCGGTTTCTAGGAACCTTGTCTCAGATCAATTGCATTTCATCGTCAAAGGCCAATGTACTTTCCCCCTTATCCCTCGAATTAGTAAGAAACGGGTTTCCCC
GGGAATCGATCCTTGGTCGTCGCCCACCATGGAATGTGAAGAACGAGGGGTTCCATAGCCTGGGAGATGAGCGTTTGCCTAAGCGGAGGCCCAGTATGAAGAATCGCAGGAAACGAGCCGCCCTGAGACCGAAAGGTCCATACTACTGGGTACAGTACACTCCCGGTGAGCCCATACCACACAGTCGGCCAAATGAGGGC
AGCGTCCGGGGAAGAAATCATCGCAAGCGGATGGAGCAACGATCTGCTTTTCGATCGGGAGAAGCTAAAAAACGGAAGGACCAGTTGGCAGGAGCTAGAAGAAGGAAAGCAATTAAAAAAATAGAGAGCAAAATGGCTGCTGTTGCAAGGGAGAGAGCCTGGGCTGAAAGGCTTGTGCAATTGCAGCAAGCTGAAGCTGA
GGCAGGAAGGTCCACAGATTGATACCACCTGGAGGAAACTTTCTTAACAACTTTCTATATTCACAGATAGATCCATGGCAGGACTTGTGGGATTATATGAATGCTCGATTTTGAGAGATGGATAAACATCGTCTTGGTATTATCTTGTACATTGATGATTCAACTTTTTGGCTACTATTGTGGTCCTCACTATGTTTATA
AGAAGGCAGTTGTTCAATGATTTGCCACGGAATTATTATATTATAGCTGTTTTCACACAACCAGTATATTCCATCCTTCAAAAGTGACTTTGTGCACAGATCACAATTTTTATTTTTAATTACTTCTGCAATACATACCACTAT
>TRINITY_DN107563_c0_g1_i2 from sample A3 / Example unspliced isoform:TCGCAGGCTATTATTTAAGAGgtacacaacaatttatttctgtccgatttttcacccgataatcgaatttaaatttgtgtgtgtttttattttatttttaaaatcgtactgtattcaaattcgaactccgtaactcagcatacatgatatgctattctctgatacaggctgaaatgccagctcgtagtcgaacttggtaa
ctaactatacatacatgtaatcgatttgctattctctgataattttttacagGTCGAAATGGCAGTGCGAATAGCAGTGCAAAAGCTGCTGGTACGTGCGGGGTTCAACACCTCCCCCATACAATCTTCATCTATTTTCTCAGAAATCTCCTCTACATCGAGTCCGATTAGCAGGCCTTCATTTGACCGGTTTCTAGGAA
CCTTGTCTCAGATCAATTGCATTTCATCGTCAAAGGCCAATGTACTTTCCCCCTTATCCCTCGAATTAGTAAGAAACGGGTTTCCCCGGGAATCGATCCTTGGTCGTCGCCCACCATGGAATGTGAAGAACGAGGGGTTCCATAGCCTGGGAGATGAGCGTTTGCCTAAGCGGAGGCCCAGTATGAAGAATCGCAGGAAA
CGAGCCGCCCTGAGACCGAAAGGTCCATACTACTGGGTACAGTACACTCCCGGTGAGCCCATACCACACAGTCGGCCAAATGAGGGCAGCGTCCGGGGAAGAAATCATCGCAAGCGGATGGAGCAACGATCTGCTTTTCGATCGGGAGAAGCTAAAAAACGGAAGGACCAGTTGGCAGGAGCTAGAAGAAGGAAAGCAAT
TAAAAAAATAGAGAGCAAAATGGCTGCTGTTGCAAGGGAGAGAGCCTGGGCTGAAAGGCTTGTGCAATTGCAGCAAGCTGAAGCTGAGGCAGGAAGGTCCACAGATTGATACCACCTGGAGGAAACTTTCTTAACAACTTTCTATATTCACAGATAGATCCATGGCAGGACTTGTGGGATTATATGAATGCTCGATTTTG
AGAGATGGATAAACATCGTCTTGGTATTATCTTGTACATTGATGATTCAACTTTTTGGCTACTATTGTGGTCCTCACTATGTTTATAAGAAGGCAGTTGTTCAATGATTTGCCACGGAATTATTATATTATAGCTGTTTTCACACAACCAGTATATTCCATCCTTCAAAAGTGACTTTGTGCACAGATCACAATTTTTAT
TTTTAATTACTTCTGCAATACATACCACTAT
Intron 2 GTACGTGCGG ... CTTGTCTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 80.6 | 5 | 25.6 | 17 |
| A2 | 75.59 | 12 | 41.1 | 35 |
| A3 | 83.31 | 9 | 54.5 | 36 |
| A4 | 82.89 | 6.6 | 38.9 | 25 |
| A5 | 79 | 7 | 22.5 | 31 |
| A6 | 75.63 | 79.9 | 232.9 | 265 |
| A7 | 83.58 | 34.9 | 184.3 | 175 |
| A8 | 76.03 | 55.6 | 165.9 | 191 |
| A9 | 78.55 | 56.2 | 195.2 | 220 |
| A10 | 72.3 | 64.9 | 156.9 | 186 |
>TRINITY_DN107858_c0_g1_i2 from sample A2 / Example spliced isoformGAATAGCAGTGCAAAAGCTGCTGATCAATTGCATTTCATCGTCAAAGGCCAATGTACTTTCCCCCTTATCCCTCGAATTAGTAAGAAACGGGTTTCCCCGGGAATCGATCCTTGGTCGTCGCCCACCATGGAATGTGAAGAACGAGGGGTTCCATAGCCTGGGAGATGAGCGTTTGCCTAAGCGGAGGCCCAGTATGAAG
AATCGCAGGAAACGAGCCGCCCTGAGACCGAAAGGTCCATACTACTGGGTACAGTACACTCCCGGTGAGCCCATACCACACAGTCGGCCAAATGAGGGCAGCGTCCGGGGAAGAAATCATCGCAAGCGGATGGAGCAAAGATCTGCTTTTCGATCGGGAGAAGCTAAAAAACGGAAGGACCAGTTGGCAGGAGCTAGAAG
AAGGAAAGCAATTAAAAAAATAGAGAGCAAAATGGCTGCTGTTGCAAGGGAGAGAGCCTGGGCTGAAAGGCTTGTGCAATTGCAGCAAGCTGAAGCTGAGGCAGGAAGGTCCACAGATTGATACCACCTGGAGGAAACTTTCTTAACAACTTTCTATATTCACAGATAGATCCATGGCAGGACTTGTGGGATTATATGAA
TGCTCGATTTTGAGAGATGGATAAACATCGTCTTGGTATTATCTTGTACATTGATGATTCAACTTTTTGGCTACTATTGTGGTCCTCACTATGTTTATAAGAAGGCAGTTGTTCAATGATTTGCCAAGGAATTATTATATTATAGCTGTTTTCACACAACCAGTATATTCCATCCTTCAAAAGTGACTTTGTGCACAGAT
CACAATTTTTATTTTTAAATACTTCTGCAATACGTACCAC
>TRINITY_DN107858_c0_g1_i3 from sample A2 / Example unspliced isoform:AGGACATGTAGTGTATGATAACCATTTCCCATTGTTTTTACACGAATGGTTATTGCTTTCGCTGCGTCGAGAGGAGCGGGGAATAACTGTAATAGCTTATATAAGAGGTCGAAATGGCAGTGCGAATAGCAGTGCAAAAGCTGCTGgtacgtgcggggttcaacacctcccccatacaatcttcatctattttctcagaa
atctcctctacatcgagtccgattagcaggccttcatttgaccggtttctaggaaccttgtctcagATCAATTGCATTTCATCGTCAAAGGCCAATGTACTTTCCCCCTTATCCCTCGAATTAGTAAGAAACGGGTTTCCCCGGGAATCGATCCTTGGTCGTCGCCCACCATGGAATGTGAAGAACGAGGGGTTCCATAG
CCTGGGAGATGAGCGTTTGCCTAAGCGGAGGCCCAGTATGAAGAATCGCAGGAAACGAGCCGCCCTGAGACCGAAAGGTCCATACTACTGGGTACAGTACACTCCCGGTGAGCCCATACCACACAGTCGGCCAAATGAGGGCAGCGTCCGGGGAAGAAATCATCGCAAGCGGATGGAGCAAAGATCTGCTTTTCGATCGG
GAGAAGCTAAAAAACGGAAGGACCAGTTGGCAGGAGCTAGAAGAAGGAAAGCAATTAAAAAAATAGAGAGCAAAATGGCTGCTGTTGCAAGGGAGAGAGCCTGGGCTGAAAGGCTTGTGCAATTGCAGCAAGCTGAAGCTGAGGCAGGAAGGTCCACAGATTGATACCACCTGGAGGAAACTTTCTTAACAACTTTCTAT
ATTCACAGATAGATCCATGGCAGGACTTGTGGGATTATATGAATGCTCGATTTTGAGAGATGGATAAACATCGTCTTGGTATTATCTTGTACATTGATGATTCAACTTTTTGGCTACTATTGTGGTCCTCACTATGTTTATAAGAAGGCAGTTGTTCAATGATTTGCCAAGGAATTATTATATTATAGCTGTTTTCACAC
AACCAGTATATTCCATCCTTCAAAAGTGACTTTGTGCACAGATCACAATTTTTATTTTTAAATACTTCTGCAATACGTACCAC