NA ----> NA
Intron 1 GTAAGTCATC ... TAAACCACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 57.05 | 32 | 39 | 46 |
| A2 | 49.63 | 34 | 27 | 40 |
| A3 | 37.28 | 53 | 42 | 21 |
| A4 | 60 | 9 | 13 | 14 |
| A5 | 44.68 | 13 | 10 | 11 |
| A6 | 33.33 | 2 | 1 | 1 |
| A7 | 46.34 | 11 | 11 | 8 |
| A8 | -1 | 0 | 0 | 0 |
| A9 | 27.27 | 4 | 3 | 0 |
| A10 | 75.61 | 5 | 16 | 15 |
>TRINITY_DN112654_c0_g1_i3 from sample A2 / Example spliced isoformCCCTCCCTCCAACGGCTGTATGAAAGAATTTAAATTTTGAGAACATCCACAACCGGTGGCTTTCCCGAGACGACCTGCTACAGCCGGTGTGAAGTGACCATCGATTGGGAGGAGCAGGGCAGAGGAGGAGGGCAGCAGGCCAGGGATGGTATGGTTTCTCTCTGAATCTGTACTGTATTGATGGCTAGAGAGGTGGGCGT
CGATCGATTGTAATGGATGCATTAACAGTGGAGGAACTAGCTTTACAGCGTATTTTCGACCTCAAGAATGAAGTAGCTCTCGAGTTCGAATCCCATCAGCGATTGTTTGACGAAGCATTGCTGTCCAATGTATTCCTCAAGGGCTTCGACCCTCCGCCCTGGTTATCTATCAACGGGAAGAGAGGAGAAATACCCATTTT
GTCTTGCAGGCGGCCTTCTTACAGTGTATTTAAAATTGGGTCAGGTGGGACGGAGGTTCATCGCCAGGATTCTCTTAACAGCATCAGAGAACAAGAGCAGTTTTCTGAGCTCTATGGTAGATTTTTCTGCAAGAGAAAGAGGGCTTCGTCCTCTGTTGATCGCCCTTCATGTCCCGAGGTTGTTGCCGCTAAGAAACCGA
GAGTTGAGGAAAGCGTTTTTGTGGCGCCCCGGGAAATTGATGGAGACCAAGGCAAAGGGCTAGTTACGGATGCCCAAGAGGAGGAGAAGGGGGAAGAACAGGGGTTTGTAGATGCCCAACATGGCGAAAATGAGGTGAGACGGCACTTGGTTGATGTAGCGCATGGAGGAAATGAAGGAAAGCAGGGCTTGTTTGATGCC
CAGCCGAACAGAAATGAAGAAGAAAACGTTGGTTCAAAGGTAGAAAATGTTAAAGGTGTAGAGAAAGGAGCCAGGGGTGGTCCAAGAAGGAGAGGGGCTAAGGAGAAAAACAACGATGCAGTGTCGCCGTTTGTGGGCAGAATTACGCGCTCGAGGGCGAAGCAGTGCCAGGTTCCTCTCAGTGCAAAGAAAGATATTGG
TAAGAGGAGAAACGCTGCGAGATCTAAGCAGTCTCGGGGAACAAGGAGGAATGCGAGTGCCAAGGGCGCTAGCGGGCTTGAGGTCTCTGAAGAGCCGAAGGATGTGATGGAGCTATTGTCATCTGCTGCAGTGACCAAACCACAGATTGGAGCTTGAAGGTAAGCCATCTACCTCGATGACTGCATTTGGAATAGAAGAT
CAGTTATCAGAATCACCAATGATGACCAAATCACAGATTCGAAACAAGTCATCTCTTGTTGTTGCTGAATCTCAAGTTGAAACCAAGTTATCTACTGCAATGACACAATTGCAAAATGAATATCACTTATCACCGGTAATGAACCATTGGCAAATCGAGGATAATGCTCAAAGAGATGATATTGAGTGCACAGAAAGAAC
CACGAAGAAATCAGAGCTGAAATATGCATCCTTGGAACCTGGTTGTGGAGGTTCAGAAGATATTGATCATAAGACTACTCAAGAGGAAGACACCTTGGAAAAAGTTGAAAGATCTGCAGGAGGAGAGTCAGCTCCAAAGGATGATTGTCGAAGACGTGCTGACAGTTGTGATGCTGAACAGCTAGAGGCCTCAAATTTGA
CTGATACTGCCCAGAAGCAAGAGATCCCGAATGCAACTGAAAATTTCCAACAGCATGACATCTCGGATACTAGCGAGGCTACTCAGCTAAATCTGAGAGAAGAAGAACACCCAATGGAATTTAGGAATCAACTTAAGGATAATTTCTGTCTGGTTGAAGAAGGTGCTGAAGGAGAAGTGCCATCTGTTTTAAGGCCATTT
GAAAACAGAAAGAGCATGGATACCATACCAACAGATACAACTTTAGTCAGTAACGCAACATGTACACCTCAAGAGATGGGAGCATCCCAATGCAAAGAGATATTTTCTGGCAAGGTCGATTTACTAGAGGACAATTTGAAAAGTACACCTACTTTGGTTCAAGATATATCCTCCATTCCTCGTTACTGTGGTAAAAGTGG
CTTGTCTGATTCCCCTCGACCCTCAAAACGTAGTTATGTGTTTGAAAGGTCAGTATTCAGTGATAATGGAAGTCATCCAATTTCTGTCATTGTTAATTTGTTAGGTAATGGACTCGTTCAAGATGTTCCACACAGCCCTTTTATAGAAGGGGCAGGTCATAAGTTGTCATTGAAAGCCAATGCCAGTGACATGACTGTTA
TGGATGTTCCTTTGAGATATGAAAGAGAGGACGCCAATGCTATTGGAATAGGTCTTGGAGAAATTTCCATTTGTCCTAATGAAAAAATACCTGACCAAGATGAACTGGATACAGCATTATATGAAGACAGAGATAAATATGAGGTCAATCCTTCAAATTTGGGCTTTATTCATCATAGGACAGCGTCATTTGACTCAGCT
TTGGGATTGTCATGTCACAACCTGCACAAAAACGAAAGTGATATTACAGGAGATTTAACAAATAAATTGAGGAACAGAAGCGTGG
>TRINITY_DN112654_c0_g1_i2 from sample A2 / Example unspliced isoform:CCCTCCCTCCAACGGCTGTATGAAAGAATTTAAATTTTGAGAACATCCACAACCGGTGGCTTTCCCGAGACGACCTGCTACAGCCGGTGTGAAGTGACCATCGATTGGGAGGAGCAGGGCAGAGGAGGAGGGCAGCAGGCCAGGGATGGTATGGTTTCTCTCTGAATCTGTACTGTATTGATGGCTAGAGAGGTGGGCGT
CGATCGATTGTAATGGATGCATTAACAGTGGAGGAACTAGCTTTACAGCGTATTTTCGACCTCAAGAATGAAGTAGCTCTCGAGTTCGAATCCCATCAGCGATTGTTTGACGAAGCATTGCTGTCCAATGTATTCCTCAAGGGCTTCGACCCTCCGCCCTGGTTATCTATCAACGGGAAGAGAGGAGAAATACCCATTTT
GTCTTGCAGGCGGCCTTCTTACAGTGTATTTAAAATTGGGTCAGGTGGGACGGAGGTTCATCGCCAGGATTCTCTTAACAGCATCAGAGAACAAGAGCAGTTTTCTGAGCTCTATGGTAGATTTTTCTGCAAGAGAAAGAGGGCTTCGTCCTCTGTTGATCGCCCTTCATGTCCCGAGGTTGTTGCCGCTAAGAAACCGA
GAGTTGAGGAAAGCGTTTTTGTGGCGCCCCGGGAAATTGATGGAGACCAAGGCAAAGGGCTAGTTACGGATGCCCAAGAGGAGGAGAAGGGGGAAGAACAGGGGTTTGTAGATGCCCAACATGGCGAAAATGAGGTGAGACGGCACTTGGTTGATGTAGCGCATGGAGGAAATGAAGGAAAGCAGGGCTTGTTTGATGCC
CAGCCGAACAGAAATGAAGAAGAAAACGTTGGTTCAAAGGTAGAAAATGTTAAAGGTGTAGAGAAAGGAGCCAGGGGTGGTCCAAGAAGGAGAGGGGCTAAGGAGAAAAACAACGATGCAGTGTCGCCGTTTGTGGGCAGAATTACGCGCTCGAGGGCGAAGCAGTGCCAGGTTCCTCTCAGTGCAAAGAAAGATATTGG
TAAGAGGAGAAACGCTGCGAGATCTAAGCAGTCTCGGGGAACAAGGAGGAATGCGAGTGCCAAGGGCGCTAGCGGGCTTGAGGTCTCTGAAGAGCCGAAGGATGTGATGGAGCTATTGTCATCTGCTGCAGTGACCAAACCACAGATTGGAGgtaagtcatctcccttaatgactgcatttagaattaaatatcagttat
cagagctgttgccatttgctgcagcgactaaaccacagCTTGAAGGTAAGCCATCTACCTCGATGACTGCATTTGGAATAGAAGATCAGTTATCAGAATCACCAATGATGACCAAATCACAGATTCGAAACAAGTCATCTCTTGTTGTTGCTGAATCTCAAGTTGAAACCAAGTTATCTACTGCAATGACACAATTGCAA
AATGAATATCACTTATCACCGGTAATGAACCATTGGCAAATCGAGGATAATGCTCAAAGAGATGATATTGAGTGCACAGAAAGAACCACGAAGAAATCAGAGCTGAAATATGCATCCTTGGAACCTGGTTGTGGAGGTTCAGAAGATATTGATCATAAGACTACTCAAGAGGAAGACACCTTGGAAAAAGTTGAAAGATC
TGCAGGAGGAGAGTCAGCTCCAAAGGATGATTGTCGAAGACGTGCTGACAGTTGTGATGCTGAACAGCTAGAGGCCTCAAATTTGACTGATACTGCCCAGAAGCAAGAGATCCCGAATGCAACTGAAAATTTCCAACAGCATGACATCTCGGATACTAGCGAGGCTACTCAGCTAAATCTGAGAGAAGAAGAACACCCAA
TGGAATTTAGGAATCAACTTAAGGATAATTTCTGTCTGGTTGAAGAAGGTGCTGAAGGAGAAGTGCCATCTGTTTTAAGGCCATTTGAAAACAGAAAGAGCATGGATACCATACCAACAGATACAACTTTAGTCAGTAACGCAACATGTACACCTCAAGAGATGGGAGCATCCCAATGCAAAGAGATATTTTCTGGCAAG
GTCGATTTACTAGAGGACAATTTGAAAAGTACACCTACTTTGGTTCAAGATATATCCTCCATTCCTCGTTACTGTGGTAAAAGTGGCTTGTCTGATTCCCCTCGACCCTCAAAACGTAGTTATGTGTTTGAAAGGTCAGTATTCAGTGATAATGGAAGTCATCCAATTTCTGTCATTGTTAATTTGTTAGGTAATGGACT
CGTTCAAGATGTTCCACACAGCCCTTTTATAGAAGGGGCAGGTCATAAGTTGTCATTGAAAGCCAATGCCAGTGACATGACTGTTATGGATGTTCCTTTGAGATATGAAAGAGAGGACGCCAATGCTATTGGAATAGGTCTTGGAGAAATTTCCATTTGTCCTAATGAAAAAATACCTGACCAAGATGAACTGGATACAG
CATTATATGAAGACAGAGATAAATATGAGGTCAATCCTTCAAATTTGGGCTTTATTCATCATAGGACAGCGTCATTTGACTCAGCTTTGGGATTGTCATGTCACAACCTGCACAAAAACGAAAGTGATATTACAGGAGATTTAACAAATAAATTGAGGAACAGAAGCGTGG
Intron 2 GTAAGTTATC ... TTTGCTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 61.37 | 29 | 38.2 | 54 |
| A2 | 53.19 | 28 | 24.7 | 39 |
| A3 | 38.47 | 51 | 37.8 | 26 |
| A4 | 61.9 | 8 | 13 | 13 |
| A5 | 61.29 | 6 | 10 | 9 |
| A6 | 33.33 | 2 | 1 | 1 |
| A7 | 56.69 | 7 | 10.3 | 8 |
| A8 | -1 | 0 | 0 | 0 |
| A9 | 27.27 | 4 | 3 | 0 |
| A10 | 83.33 | 3 | 16 | 14 |
>TRINITY_DN127085_c0_g3_i2 from sample A1 / Example spliced isoformCTTACAAGCAGATGGGTTAATTAAGAGGATGGGTGTAAAAGGACAATGGGTAAGTAAGATTTTTACGGCTATATTTCGAAAGCGTTTGAATTTTGGGACCTTCTCCAACGGGCGGCATTTTTTCAAAGACGACCTGCTACAGCCGGTGTGAAGTGACCATCGATTGGGAGGAGCAGGGCAGAGGAGGAGGGCAGCAGGCC
AGGGATGGTATGGTTTCTCTCTGAATCTGTACTGTATTGATGGCTAGAGAGGTGGGCGTCGATCGATTGTAATGGATGCATTAACAGTGGAGGAACTAGCTTTACAGCGTATTTTCGACCTCAAGAATGAAGTAGCTCTCGAGTTCGAATCCCATCAGCGATTGTTTGACGAAGCATTGCTGTCCAATGTATTCCTCAAG
GGCTTCGACCCTCCGCCCTGGTTATCTATCAACGGGAAGAGAGGAGAAATACCCATTTTGTCTTGCAGGCGGCCTTCTTACAGTGTATTTAAAATTGGGTCAGGTGGGACGGAGGTTCATCGCCAGGATTCTCTTAACAGCATCAGAGAACAAGAGCAGTTTTCTGAGCTCTATGGTAGATTTTTCTGCAAGAGAAAGAG
GGCTTCGTCCTCTGTTGATCGCCCTTCATGTCCCGAGGTTGTTGCCGCTAAGAAACCGAGAGTTGAGGAAAGCGTTTTTGTGGCGCCCCGGGAAATTGATGGAGACCAAGGCAAAGGGCTAGTTACGGATGCCCAAGAGGAGGAGAAGGGGGAAGAACAGGGGTTTGTAGATGCCCAACATGGCGAAAATGAGGTGAGAC
GGCACTTGGTTGATGTAGCGCATGGAGGAAATGAAGGAAAGCAGGGCTTGTTTGATGCCCAGCCGAACAGAAATGAAGAAGAAAACGTTGGTTCAAAGGTAGAAAATGTTAAAGGTGTAGAGAAAGGAGCCAGGGGTGGTCCAAGAAGGAGAGGGGCTAAGGAGAAAAACAACGATGCAGTGTCGCCGTTTGTGGGCAGA
ATTACGCGCTCGAGGGCGAAGCAGTGCCAGGTTCCTCTCAGTGCAAAGAAAGATATTGGTAAGAGGAGAAACGCTGCGAGATCTAAGCAGTCTCGGGGAACAAGGAGGAATGCGAGTGCCAAGGGCGCTAGCGGGCGTGAGGTCTCTGAAGAGCCGAAGGATGTGATGGAGCTATTGTCATCTGCTGCAGTGACCAAACC
ACAGATTGGAGCGACTAAACCACAGCTTGAAGGTAAGCCATCTACCTCGATGACTGCATTTGGAATAGAAGATCAGTTATCAGAATCACCAATGATGACCAAATCACAGATTCGAAACAAGTCATCTCTTGTTGTTGCTGAATCTCAAGTTGAAACCAAGTTATCTACTGCAATGACACAATTGCAAAATGAATATCACT
TATCACCGGTAATGAACCATTGGCAAATCGAGGATAATGCTCAAAGAGATGATATTGAGTGCACAGAAAGAACCACGAAGAAATCAGAGCTGAAATATGCATCCTTGGAACCTGGTTGTGGAGGTTCAGAAGATATTGATCATAAGACTACTCAAGAGGAAGACACCTTGGAAAAAGTTGAAAGATCTGCAGGAGGAGAG
TCAGCTCCAAAGGATGATTGTCGAAGACGTGCTGACAGTTGTGATGCTGAACAGCTAGAGGCCTCAAATTTGACTGATACTGCCCAGAAGCAAGAGATCCCGAATGCAACTGAAAATTTCCAACAGCATGACATCTCGGATACTAGCGAGGCTACTCAGCTAAATCTGAGAGAAGAAGAACACCCAATGGAATTTAGGAA
TCAACTTAAGGATAATTTCTGTCTGGTTGAAGAAGGTGCTGAAGGAGAAGTGCCATCTGTTTTAAGGCCATTTGAAAACAGAAAGAGCATGGATACCATACCAACAGATACAACTTTAGTCAGTAACGCAACATGTACACCTCAAGAGATGGGAGCATCCCAATGCAAAGAGATATTTTCTGGCAAGGTCGATTTACTAG
AGGACAATTTGAAAAGTACACCTACTTTGGTTCAAGATATATCCTCCATTCCTCGTTACTGTGGTAAAAGTGGCTTGTCTGATTCCCCTCGACCCTCAAAACGTAGTTATTTGTTTGAAAGGTCAGTATTCAGTGATAATGGAAGTCATCCAATTTCTGTCATTGTTAATTTGTTAGGTAATGGACTCGTTCAAGATGTT
CCACACAGCCCTTTTATAGAAGGGGCAGGTCATAAGTTGTCATTGAAAGCCAATGCCAGTGACATGACTGTTATGGATGTTCCTTTGAGATATGAAAGAGAGGACGCCAATGCTATTGGAATAGGACTTGGAGAAATTTCCATTTGTCCTAATGAAAAAA
>TRINITY_DN127085_c0_g3_i1 from sample A1 / Example unspliced isoform:CTTACAAGCAGATGGGTTAATTAAGAGGATGGGTGTAAAAGGACAATGGGTAAGTAAGATTTTTACGGCTATATTTCGAAAGCGTTTGAATTTTGGGACCTTCTCCAACGGGCGGCATTTTTTCAAAGACGACCTGCTACAGCCGGTGTGAAGTGACCATCGATTGGGAGGAGCAGGGCAGAGGAGGAGGGCAGCAGGCC
AGGGATGGTATGGTTTCTCTCTGAATCTGTACTGTATTGATGGCTAGAGAGGTGGGCGTCGATCGATTGTAATGGATGCATTAACAGTGGAGGAACTAGCTTTACAGCGTATTTTCGACCTCAAGAATGAAGTAGCTCTCGAGTTCGAATCCCATCAGCGATTGTTTGACGAAGCATTGCTGTCCAATGTATTCCTCAAG
GGCTTCGACCCTCCGCCCTGGTTATCTATCAACGGGAAGAGAGGAGAAATACCCATTTTGTCTTGCAGGCGGCCTTCTTACAGTGTATTTAAAATTGGGTCAGGTGGGACGGAGGTTCATCGCCAGGATTCTCTTAACAGCATCAGAGAACAAGAGCAGTTTTCTGAGCTCTATGGTAGATTTTTCTGCAAGAGAAAGAG
GGCTTCGTCCTCTGTTGATCGCCCTTCATGTCCCGAGGTTGTTGCCGCTAAGAAACCGAGAGTTGAGGAAAGCGTTTTTGTGGCGCCCCGGGAAATTGATGGAGACCAAGGCAAAGGGCTAGTTACGGATGCCCAAGAGGAGGAGAAGGGGGAAGAACAGGGGTTTGTAGATGCCCAACATGGCGAAAATGAGGTGAGAC
GGCACTTGGTTGATGTAGCGCATGGAGGAAATGAAGGAAAGCAGGGCTTGTTTGATGCCCAGCCGAACAGAAATGAAGAAGAAAACGTTGGTTCAAAGGTAGAAAATGTTAAAGGTGTAGAGAAAGGAGCCAGGGGTGGTCCAAGAAGGAGAGGGGCTAAGGAGAAAAACAACGATGCAGTGTCGCCGTTTGTGGGCAGA
ATTACGCGCTCGAGGGCGAAGCAGTGCCAGGTTCCTCTCAGTGCAAAGAAAGATATTGGTAAGAGGAGAAACGCTGCGAGATCTAAGCAGTCTCGGGGAACAAGGAGGAATGCGAGTGCCAAGGGCGCTAGCGGGCGTGAGGTCTCTGAAGAGCCGAAGGATGTGATGGAGCTATTGTCATCTGCTGCAGTGACCAAACC
ACAGATTGGAGgtaagtcatctcccttaatgactgcatttagaattaaatatcagttatcagagctgttgccatttgctgcagCGACTAAACCACAGCTTGAAGGTAAGCCATCTACCTCGATGACTGCATTTGGAATAGAAGATCAGTTATCAGAATCACCAATGATGACCAAATCACAGATTCGAAACAAGTCATCTC
TTGTTGTTGCTGAATCTCAAGTTGAAACCAAGTTATCTACTGCAATGACACAATTGCAAAATGAATATCACTTATCACCGGTAATGAACCATTGGCAAATCGAGGATAATGCTCAAAGAGATGATATTGAGTGCACAGAAAGAACCACGAAGAAATCAGAGCTGAAATATGCATCCTTGGAACCTGGTTGTGGAGGTTCA
GAAGATATTGATCATAAGACTACTCAAGAGGAAGACACCTTGGAAAAAGTTGAAAGATCTGCAGGAGGAGAGTCAGCTCCAAAGGATGATTGTCGAAGACGTGCTGACAGTTGTGATGCTGAACAGCTAGAGGCCTCAAATTTGACTGATACTGCCCAGAAGCAAGAGATCCCGAATGCAACTGAAAATTTCCAACAGCA
TGACATCTCGGATACTAGCGAGGCTACTCAGCTAAATCTGAGAGAAGAAGAACACCCAATGGAATTTAGGAATCAACTTAAGGATAATTTCTGTCTGGTTGAAGAAGGTGCTGAAGGAGAAGTGCCATCTGTTTTAAGGCCATTTGAAAACAGAAAGAGCATGGATACCATACCAACAGATACAACTTTAGTCAGTAACG
CAACATGTACACCTCAAGAGATGGGAGCATCCCAATGCAAAGAGATATTTTCTGGCAAGGTCGATTTACTAGAGGACAATTTGAAAAGTACACCTACTTTGGTTCAAGATATATCCTCCATTCCTCGTTACTGTGGTAAAAGTGGCTTGTCTGATTCCCCTCGACCCTCAAAACGTAGTTATTTGTTTGAAAGGTCAGTA
TTCAGTGATAATGGAAGTCATCCAATTTCTGTCATTGTTAATTTGTTAGGTAATGGACTCGTTCAAGATGTTCCACACAGCCCTTTTATAGAAGGGGCAGGTCATAAGTTGTCATTGAAAGCCAATGCCAGTGACATGACTGTTATGGATGTTCCTTTGAGATATGAAAGAGAGGACGCCAATGCTATTGGAATAGGACT
TGGAGAAATTTCCATTTGTCCTAATGAAAAAA