sp|Q9SY02|PP301_ARATH ----> Pentatricopeptide repeat-containing protein At4g02750
Intron 1 GTAGGCAGTT ... GAGATTATAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 21.93 | 26 | 6 | 9 |
| A2 | 28.8 | 27 | 7.5 | 14.5 |
| A3 | 21.45 | 34 | 8 | 11 |
| A4 | 25.21 | 23 | 9.5 | 6.5 |
| A5 | 26.46 | 14 | 6 | 4.5 |
| A6 | 53.39 | 25 | 27.5 | 30.5 |
| A7 | 48.6 | 34 | 33 | 33.5 |
| A8 | 50 | 40 | 32.5 | 50 |
| A9 | 50.25 | 35 | 29.5 | 42 |
| A10 | 52.94 | 41 | 51 | 43.5 |
>TRINITY_DN41042_c0_g1_i4 from sample A9 / Example spliced isoformCAGACTTGTTAACAACCAAGGAGAGATTCTTCCACTTGTTAAATTGATGGTTAGAGTCGCAAGACAAGACTTCCATTAACTTGGATGAGTGAAGAGCGTACCCTGCTAGTGAACGGAGGTAGAGAACTTCATGAATATATTGCCAGAAACCTATGGTTCTCCATACGGAAAGCTAAGGATTTATTTACTATTGCAGACCG
ACAGCCAAACCAATAACCCAGGGTTTGGTTTGCTGGCTAACTAACCCTGGTTAGCCAGTATTATTTGTTCCCGCGGCGTCCTTCCATATATATATTCACTGCTGCAAATGTTCTGTTGTTCTTCTGCTACGCAAAACGCGCATTTTTTGGCTCAAAATCTCTGCAAACCATTGGCCGATGAGGGTTTTATACTCCGTTGA
ATTTGCCCAAGGTCTCTTGAACGTTTTGTGTTGCTGATAAATCTATGTTCGAATCCTGTGCCCGTGCACATCTGTGAAAATTTGTGGGGGGGTTTAACTTTTTCCTCCTCCCCCACTGCAATCTTCAGGGTTTCATAGAATCTCCGAGGGGGAGGAGGTCGCTGGAATGTCCGAAAGGGTAAGCGGGAGGCCCCCAAAAG
ATCCAGAAATGGAAAAGAGCGAAGCCGAGGAGGAACAAAAAAGGAGCCGAGGAAGGCCCAAGCGATATCCCGATAGAGAAATTCTGACTGCAAAGGAAGAAGATCCGGAGACAGTTAAAGGTACAGGGAGGCCTCGGAGAATCCTACCTTCAGCTAAAATCTCACAGAGCCATGTAAAAGCCGAGGGTTCTGAACATACG
ACTGCCAGTGCGTTGCCAGCAGCAGCCGGCGAGCAGGACGTGGTGATTTCGTCTCCGCCCGATCCGCAGAAGGAGCGAGGGCGCATACGCAACATGTTGGAGTTGGCGTCCGTGCTGAATTTTATACACGTTTTTAGACCCGTACTGAATATAAATACGGAGTTTTCAGCGGAGGAACTCGAAACTGCGCTGATTACGCC
TAATAATACTCTGAGTCAGCTGCATATACAGCTTCTGAAGGGCATACCACCAGTGAGCAGGACGTTAGGGAATAACATGTGGGTTATGAAACTGTGCAAGAAGCTTGCAGATTGGTGGCCATGGGTTGCTGAAGGTGAACTTCCACTTGTTGCATGTCATGGCGTACAAAAAGCTGAATCCTTGCACCCGTGTGTTGATT
TTGAAAGCTCTTTGTGAAATTCGTGTGGAGGAATTATAATATGAACTGGGCCATGCTAGTTTGGTCTCCCATTCGACACATCATTGTTGGATGCTCGGAGAACCTCTCTGTTGTTATTTTTTTCATGGACTCACTAAGACAACTAGGCTTGAATTTTCTAGAATGTGAGGAGTTGGCAAATAATAACTTTTCGAACGAAT
TCATGAAACCACTTGTAATTGTGATGCAAAAGAGCAACTTTGTAGAAATTAGGGAACTTGCCATTCGATGTGTTTCCAAATGGTTTTGGCTTGTGTCAACAATGTCAAGTTGGGATGGAAAAGCATGTTTTGCACTGTATGATTTTCATTCTTTGTTCAAGTTGTATACCATTTCTTTGCTTTGAATAGTACATGGGCCT
ATAATGTTGTTGTAGATAAATATTAAAAACCCCTTTTAGAAGTTAGTTTGTATGATTGAACCTTCATTTTTTTCATTATGTAGATGGGTTTCTTAAACACTTTAAAATATAATTCTATG
>TRINITY_DN41042_c0_g1_i3 from sample A9 / Example unspliced isoform:GCTACAATGGTTGTTGTCCACAATTGGTTGACAGAATTTGTCAAACAAGTCGCGTGCCTTCTTTATGCTTCCACTTGTTGCATGTCATGGgtaggcagttcgatcttggaataaatcactttcattcttgatgtggaacaaaatagtgatacaattgtatcttttccatgcaaggaggagattatagCGTACAAAAAGCT
GAATCCTTGCACCCGTGTGTTGATTTTGAAAGCTCTTTGTGAAATTCGTGTGGAGGAATTATAATATGAACTGGGCCATGCTAGTTTGGTCTCCCATTCGACACATCATTGTTGGATGCTCGGAGAACCTCTCTGTTGTTATTTTTTTCATGGACTCACTAAGACAACTAGGCTTGAATTTTCTAGAATGTGAGGAGTTG
GCAAATAATAACTTTTCGAACGAATTCATGAAACCACTTGTAATTGTGATGCAAAAGAGCAACTTTGTAGAAATTAGGGAACTTGCCATTCGATGTGTTTCCAAATGGTTTTGGCTTGTGTCAACAATGTCAAGTTGGGATGGAAAAGCATGTTTTGCACTGTATGATTTTCATTCTTTGTTCAAGTTGTATACCATTTC
TTTGCTTTGAATAGTACATGGGCCTATAATGTTGTTGTAGATAAATATTAAAAACCCCTTTTAGAAGTTAGTTTGTATGATTGAACCTTCATTTTTTTCATTATGTAGATGGGTTTCTTAAACACTTTAAAATATAATTCTATG
Intron 2 GTAAAAATAT ... CTGTTTTAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 23.08 | 45 | 17 | 10 |
| A2 | 16.67 | 30 | 4 | 8 |
| A3 | 19.44 | 29 | 10 | 4 |
| A4 | 33.33 | 12 | 8 | 4 |
| A5 | 29.03 | 11 | 7 | 2 |
| A6 | 25 | 6 | 4 | 0 |
| A7 | 16.46 | 33 | 7 | 6 |
| A8 | 19.4 | 27 | 7 | 6 |
| A9 | 22.35 | 33 | 9 | 10 |
| A10 | 18.52 | 33 | 5 | 10 |
>TRINITY_DN117096_c3_g1_i2 from sample A1 / Example spliced isoformTCTCACTTTAGAGTTGCAAGCCCAGACTTGTTAACAACCAAGGAGAGATTCTTCCACTTGTTAAATTGATGGTTAGAGTCGCAAGACAAGACTTCCATTAACTTGGATGAGTGAAGAGCGTACCCTGCTAGTGAACGGAGGTAGAGAACTTCATGAATATATTGCCAGAAACCTATGGTTCTCCATACGGAAAGCTAAGG
ATTTATTTACTATTGCAGACCGACAGCCAAACCAATAACCCAGGGTTTGGTTTGCTGGCTAACTAACCCTGGTTAGCCAGTATTATTTGTTCCCGCGGCGTCCTTCCATATATATATTCACTGCTGCAAATGTTCTGTTGTTCTTCTGCTACGCAAAACGCGCATTTTTTGGCTCAAAATCTCTGCAAACCATTGGCCGA
TGAGGGTTTTATACTCCGTTGAATTTGCCCAAGGTCTCTTGAACGTTTTGTGTTGCTGATAAATCTATGTTCGAATCCTGTGCCCGTGCACATCTGTGAAAATTTGTGGGGGGGTTTAACTTTTTCCTCCTCCCCCACTGCAATCTTCAGGGTTTCATAGAATCTCCGAGGGGGAGGAGGTCGCTGGAATGTCCGAAAGG
GTAAGCGGGAGGCCCCCAAAAGATCCAGAAATGGAAAAGAGCGAAGCCGAGGAGGAACAAAAAAGGAGCCGAGGAAGGCCCAAGCGATATCCCGATAGAGAAATTCTGACTGCAAAGGAAGAAGATCCGGAGACAGTTAAAGGTACAGGGAGGCCTCGGAGAATCCTACCTTCAGCTAAAATCTCACAGAGCCATGTAAA
AGCCGAGGGTTCTGAACATACGACTGCCAGTGCGTTGCCAGCAGCAGCCGGCGAGCAGGACGTGGTGATTTCGTCTCCGCCCGATCCGCAGAAGGAGCGAGGGCGCATACGCAACATGTTGGAGTTGGCGTCCGTGCTGAATTTTATACACGTTTTTAGACCCGTACTGAATATAAATACGGAGTTTTCAGCGGAGGAAC
TCGAAACTGCGCTGATTACGCCTAATAATACTCTGAGTCAGCTGCATATACAGCTTCTGAAGGGCATACCACCAGTGAGCAGGACATTAGGGAATAACGTGTGGGTTACGGCACTTTGCAAGAAGCTTGCAGATTGGTGGCCATGGGTTGCTGAAGGTGAACTTCCACTTGTTGCATGTCATGGGGAGGAGATTATAGCG
TACAAAAAGCTGGATCCTTGCACTCGTGTGTTGGTTTTGAAAGCTCTTTGTGAAATTCGTCTAGAGCAAGATGACATTTGGAAGTTTATTGATGATTCATTAAAGCACAACAACTTCCAGCTTTCTAGTTTCCGCAAAGCACGGTTAGGGGGTGATGCACATGGAACTTCATACTGGTATGATGCAGATTCCATTATTGG
GCATAGATTATATAGGGAAATACAGAAAATTGAAGTTAAAATCAAGCCAAAAGGAAAGGGTCGTTCAACAGAACCTTTAGTGAGTTGTCAGTGGGAAGCCATTGCGACTAACCTTGATGAATTCCTGGCAGTATCGGTATGTAGCTGGAAAAAATTGACCATTTTATGAACTTTTGTAAAGCTTTTCATGAGGTTTACAT
ATTGCAATCTTTCAAACTTTTATTTTTCCTTTTTCCTCCCTAGATAAAGTACTTACTATTATTTAGCAATGGTATTCATTTTATTTTCCAATGTGGTGCACAGAATAAAGAAAATAATTTATATTATAGATATGGCATGTATTGCTGTATATCTCTTGTAACATCTTGACGACTTGCAGGAAAAATTTGCTTCCAGTAGA
AATAAGGTAGAGGCAGGGATTGGAAAGAAAATTAAGAATGATATTGTTCCTGTTCTTGAAGAACTTCAGAAGGTTTGTAATTCTCAGCGTATTCAAGATGAGTGCAAAAACAGTAATCAGTAAAAGGGGCAAGGGGTCAAAATTCATAATTACTCATTCTTTAATCAAGATTTATCTGCGTAATACATATCTATTTATTT
TGGTTTAACTTGTCCAGGGAGATAGAGGATGTCATACTTCAATTTTATGGTTTATTGACTGTCATTATCTGCAATATTTAAGAAGCCTGAATCTATGGTTACTTTTAATTTATTTGTTGTGAGGAGTCCTCATATGTCTAATCCAAAATTCGTGTCTTTACGAGATGTGTGGCTTAAGATCTTTTTCTTATACTGTCATT
ACTAACAGAAGAAAGAACGAGCACTGAAAAAACAGCAGAGGCAAGCCACACTTCTAGATAGCTTTTTTGTTGCACAAGGAGAGGCTATTGGTCGTTCCCGTCGTGACCGCAAACCTGTTAAGTACACATTTGGTATGCAATCTCTCCTTTCATGTCATATTATGTAAGATTAGGTCTATTTAGTACTTGCTATGAAGGTT
GGATATATCATATTAATAAGAATGTCTGCA
>TRINITY_DN117096_c3_g1_i8 from sample A1 / Example unspliced isoform:TCTCACTTTAGAGTTGCAAGCCCAGACTTGTTAACAACCAAGGAGAGATTCTTCCACTTGTTAAATTGATGGTTAGAGTCGCAAGACAAGACTTCCATTAACTTGGATGAGTGAAGAGCGTACCCTGCTAGTGAACGGAGGTAGAGAACTTCATGAATATATTGCCAGAAACCTATGGTTCTCCATACGGAAAGCTAAGG
ATTTATTTACTATTGCAGACCGACAGCCAAACCAATAACCCAGGGTTTGGTTTGCTGGCTAACTAACCCTGGTTAGCCAGTATTATTTGTTCCCGCGGCGTCCTTCCATATATATATTCACTGCTGCAAATGTTCTGTTGTTCTTCTGCTACGCAAAACGCGCATTTTTTGGCTCAAAATCTCTGCAAACCATTGGCCGA
TGAGGGTTTTATACTCCGTTGAATTTGCCCAAGGTCTCTTGAACGTTTTGTGTTGCTGATAAATCTATGTTCGAATCCTGTGCCCGTGCACATCTGTGAAAATTTGTGGGGGGGTTTAACTTTTTCCTCCTCCCCCACTGCAATCTTCAGGGTTTCATAGAATCTCCGAGGGGGAGGAGGTCGCTGGAATGTCCGAAAGG
GTAAGCGGGAGGCCCCCAAAAGATCCAGAAATGGAAAAGAGCGAAGCCGAGGAGGAACAAAAAAGGAGCCGAGGAAGGCCCAAGCGATATCCCGATAGAGAAATTCTGACTGCAAAGGAAGAAGATCCGGAGACAGTTAAAGGTACAGGGAGGCCTCGGAGAATCCTACCTTCAGCTAAAATCTCACAGAGCCATGTAAA
AGCCGAGGGTTCTGAACATACGACTGCCAGTGCGTTGCCAGCAGCAGCCGGCGAGCAGGACGTGGTGATTTCGTCTCCGCCCGATCCGCAGAAGGAGCGAGGGCGCATACGCAACATGTTGGAGTTGGCGTCCGTGCTGAATTTTATACACGTTTTTAGACCCGTACTGAATATAAATACGGAGTTTTCAGCGGAGGAAC
TCGAAACTGCGCTGATTACGCCTAATAATACTCTGAGTCAGCTGCATATACAGCTTCTGAAGGGCATACCACCAGTGAGCAGGACATTAGGGAATAACGTGTGGGTTACGGCACTTTGCAAGAAGCTTGCAGATTGGTGGCCATGGGTTGCTGAAGGTGAACTTCCACTTGTTGCATGTCATGGGGAGGAGATTATAGCG
TACAAAAAGCTGGATCCTTGCACTCGTGTGTTGGTTTTGAAAGCTCTTTGTGAAATTCGTCTAGAGCAAGATGACATTTGGAAGTTTATTGATGATTCATTAAAGCACAACAACTTCCAGCTTTCTAGTTTCCGCAAAGCACGGTTAGGGGGTGATGCACATGGAACTTCATACTGgtaaaaatatgcaactagacattt
ggttggttaatcttgattcttttgttatcttgatatcattaaagatcattttaagaatgatcatctttggttatgttttatgaatgattatattctcatctatgttttcagacacttttgaatatttttatttagatactattacagaatccatggctcatatctgatttttcagtttctgttttaagGTATGATGCAGA
TTCCATTATTGGGCATAGATTATATAGGGAAATACAGAAAATTGAAGTTAAAATCAAGCCAAAAGGAAAGGGTCGTTCAACAGAACCTTTAGTGAGTTGTCAGTGGGAAGCCATTGCGACTAACCTTGATGAATTCCTGGCAGTATCGGTATGTAGCTGGAAAAAATTGACCATTTTATGAACTTTTGTAAAGCTTTTCA
TGAGGTTTACATATTGCAATCTTTCAAACTTTTATTTTTCCTTTTTCCTCCCTAGATAAAGTACTTACTATTATTTAGCAATGGTATTCATTTTATTTTCCAATGTGGTGCACAGAATAAAGAAAATAATTTATATTATAGATATGGCATGTATTGCTGTATATCTCTTGTAACATCTTGACGACTTGCAGGAAAAATTT
GCTTCCAGTAGAAATAAGGTAGAGGCAGGGATTGGAAAGAAAATTAAGAATGATATTGTTCCTGTTCTTGAAGAACTTCAGAAGGTTTGTAATTCTCAGCGTATTCAAGATGAGTGCAAAAACAGTAATCAGTAAAAGGGGCAAGGGGTCAAAATTCATAATTACTCATTCTTTAATCAAGATTTATCTGCGTAATACAT
ATCTATTTATTTTGGTTTAACTTGTCCAGGGAGATAGAGGATGTCATACTTCAATTTTATGGTTTATTGACTGTCATTATCTGCAATATTTAAGAAGCCTGAATCTATGGTTACTTTTAATTTATTTGTTGTGAGGAGTCCTCATATGTCTAATCCAAAATTCGTGTCTTTACGAGATGTGTGGCTTAAGATCTTTTTCT
TATACTGTCATTACTAACAGAAGAAAGAACGAGCACTGAAAAAACAGCAGAGGCAAGCCACACTTCTAGATAGCTTTTTTGTTGCACAAGGAGAGGCTATTGGTCGTTCCCGTCGTGACCGCAAACCTGTTAAGTACACATTTGATGATTACGACCGTTCTATTGATGAGGCAATACAAATGACAAAGAAGATTTGGCCA
TCTTCGGATCAGATTTTGAAAAGGCATATGGCAATGGATGAACATCCTGAAGCAAATGGTAATGAAAACGGTCATGGTAACAACCCTGAAAATAGATTATCGCCAGAGTCAAAAGATGGGAGTGAAGAATCTAATGTGCTCCGCACATCTGGTCCTTCCACACGCAGCACTAGGTTGAGACCTACAGCTCAAAGAAGCAT
GGAAAGGAAATATATGGAAGATGCTTCTGACAATGATGTTGGCAGCAAGGATGAAATGTCTGTGGATGCAGTAACTGATGGAGGCATAAAAAGTAAAAAGAGTATAAGCATACCCAGTAGTTCAGATGGCGAGGATGGAAGCAGAGAGGATGCAGATGGCGACGACGAGTACAGAGAGGATGACGGTGATGAAGAGTACA
GAGAGGATGACGGTGATGAAGAGTACAGAGAGGATGAAGAGGATGTAGAAGATGACGATGATAACATTGATGATGAGAGTGTTAAGGATGATATTAGTGATAGTCCCCGCCGAAGAAAGCGTTCGAGTCGAAGGAAAAGGAGCTGGAGACCCGATGACATTGAAGATGTAAGCATTAGTGATGATGATGACGACGAGGAC
GATGATGATGATAGTGGCGACAAAAGAAAGTATCCAACTCGAGGAAAGAGGCGGGGAAAACCTGTAGTTGAACATCAATCAGGTTTGCGAAGAAGCAAGAGAGCCACTCGTGTGGATTATAGCCAATATGAGATGTCTAATTCCGAGGAAGAAAATTTGGAATCCGAGAGGCAATCAAAACCAAATGTCAAGAAAAAAAT
GTCTAAAATGGAGTCAGATGTAAGTAACAGTTCCCACTCTGACATGAAAGTTGAAAGTTCTCTAGATGATGACTCAGACCAAGCTAGAGATGAAAAGCAGCTCATTACTGAAGATGCCCAGTCACGTGAAGCTTCCAAAGAAGAGCCTATCTTAAGGCCTTGGGAACAGTTTGGAGAACAATCGCTAGATTTAAAGAGCC
GGCACTTTATTGACCTAAATGAGGCAGCTCCACTCACAGGCTTTGATGACATTGTCTTAAACAACAGTACAAAACAGATAGTACCTGAGGATTCCATATCCAAGCAAGTCCGAAACAATGAGAATGATGATCGTTACTGATCATTTTCTTGCACAGGAGTACAGAGATGCAGTCATTTGTGGGGGGGAACATATTTTCAT
TTTCTTCATTATTTTGGACTTCTTTTTCACATGGTATCAGTCAGTTATCATTAATACAGGGTTCCAACTCAAGGTTAGAGTGTAGATCTGTCAATTTCTAAGATCAACTGTACAATATTCTTAGATTGTGTCAAATGCTGCTAAATTTACTCATTGTATGAGTTTTTTGCAGCGGGACGCTAGCTTTTCATTCTAATTGT
AATTTATTTATAGAAAAATTTCTCGATCTTATATATATCCTGATTCAGTGCGGAGAAAGATGGTGCATGGAATTGAGCAAACTCAATTATAAAACATATCATATGTTTGGACTTCCCTGTACTGGATTGATTCAGAACATGTGCGTAAGCGAATATAACATAAAAGCATTATAGCA
Intron 3 GTATGTAGCT ... CGACTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 31.24 | 39.6 | 18 | 12.5 |
| A2 | 38.48 | 35.3 | 22 | 0.5 |
| A3 | 25 | 33.1 | 11 | 1 |
| A4 | 38.17 | 14.6 | 9 | 2 |
| A5 | 50.22 | 14.9 | 15 | 0 |
| A6 | 35.41 | 1.9 | 1 | 0.5 |
| A7 | 26.39 | 64.4 | 23 | 0 |
| A8 | 34.98 | 48.4 | 26 | 2 |
| A9 | 19.03 | 47.3 | 11 | 0 |
| A10 | 29.73 | 26 | 11 | 3 |
>TRINITY_DN117096_c3_g1_i5 from sample A1 / Example spliced isoformTCTCACTTTAGAGTTGCAAGCCCAGACTTGTTAACAACCAAGGAGAGATTCTTCCACTTGTTAAATTGATGGTTAGAGTCGCAAGACAAGACTTCCATTAACTTGGATGAGTGAAGAGCGTACCCTGCTAGTGAACGGAGGTAGAGAACTTCATGAATATATTGCCAGAAACCTATGGTTCTCCATACGGAAAGCTAAGG
ATTTATTTACTATTGCAGACCGACAGCCAAACCAATAACCCAGGGTTTGGTTTGCTGGCTAACTAACCCTGGTTAGCCAGTATTATTTGTTCCCGCGGCGTCCTTCCATATATATATTCACTGCTGCAAATGTTCTGTTGTTCTTCTGCTACGCAAAACGCGCATTTTTTGGCTCAAAATCTCTGCAAACCATTGGCCGA
TGAGGGTTTTATACTCCGTTGAATTTGCCCAAGGTCTCTTGAACGTTTTGTGTTGCTGATAAATCTATGTTCGAATCCTGTGCCCGTGCACATCTGTGAAAATTTGTGGGGGGGTTTAACTTTTTCCTCCTCCCCCACTGCAATCTTCAGGGTTTCATAGAATCTCCGAGGGGGAGGAGGTCGCTGGAATGTCCGAAAGG
GTAAGCGGGAGGCCCCCAAAAGATCCAGAAATGGAAAAGAGCGAAGCCGAGGAGGAACAAAAAAGGAGCCGAGGAAGGCCCAAGCGATATCCCGATAGAGAAATTCTGACTGCAAAGGAAGAAGATCCGGAGACAGTTAAAGGTACAGGGAGGCCTCGGAGAATCCTACCTTCAGCTAAAATCTCACAGAGCCATGTAAA
AGCCGAGGGTTCTGAACATACGACTGCCAGTGCGTTGCCAGCAGCAGCCGGCGAGCAGGACGTGGTGATTTCGTCTCCGCCCGATCCGCAGAAGGAGCGAGGGCGCATACGCAACATGTTGGAGTTGGCGTCCGTGCTGAATTTTATACACGTTTTTAGACCCGTACTGAATATAAATACGGAGTTTTCAGCGGAGGAAC
TCGAAACTGCGCTGATTACGCCTAATAATACTCTGAGTCAGCTGCATATACAGCTTCTGAAGGGCATACCACCAGTGAGCAGGACATTAGGGAATAACGTGTGGGTTACGGCACTTTGCAAGAAGCTTGCAGATTGGTGGCCATGGGTTGCTGAAGGTGAACTTCCACTTGTTGCATGTCATGGGGAGGAGATTATAGCG
TACAAAAAGCTGGATCCTTGCACTCGTGTGTTGGTTTTGAAAGCTCTTTGTGAAATTCGTCTAGAGCAAGATGACATTTGGAAGTTTATTGATGATTCATTAAAGCACAACAACTTCCAGCTTTCTAGTTTCCGCAAAGCACGGTTAGGGGGTGATGCACATGGAACTTCATACTGGTATGATGCAGATTCCATTATTGG
GCATAGATTATATAGGGAAATACAGAAAATTGAAGTTAAAATCAAGCCAAAAGGAAAGGGTCGTTCAACAGAACCTTTAGTGAGTTGTCAGTGGGAAGCCATTGCGACTAACCTTGATGAATTCCTGGCAGTATCGGAAAAATTTGCTTCCAGTAGAAATAAGGTAGAGGCAGGGATTGGAAAGAAAATTAAGAATGATA
TTGTTCCTGTTCTTGAAGAACTTCAGAAGAAGAAAGAACGAGCACTGAAAAAACAGCAGAGGCAAGCCACACTTCTAGATAGCTTTTTTGTTGCACAAGGAGAGGCTATTGGTCGTTCCCGTCGTGACCGCAAACCTGTTAAGTACACATTTGATGATTACGACCGTTCTATTGATGAGGCAATACAAATGACAAAGAAG
ATTTGGCCATCTTCGGATCAGATTTTGAAAAGGCATATGGCAATGGATGAACATCCTGAAGCAAATGGTAATGAAAACGGTCATGGTAACAACCCTGAAAATAGATTATCGCCAGAGTCAAAAGATGGGAGTGAAGAATCTAATGTGCTCCGCACATCTGGTCCTTCCACACGCAGCACTAGGTTGAGACCTACAGCTCA
AAGAAGCATGGAAAGGAAATATATGGAAGATGCTTCTGACAATGATGTTGGCAGCAAGGATGAAATGTCTGTGGATGCAGTAACTGATGGAGGCATAAAAAGTAAAAAGAGTATAAGCATACCCAGTAGTTCAGATGGCGAGGATGGAAGCAGAGAGGATGCAGATGGCGACGACGAGTACAGAGAGGATGACGGTGATG
AAGAGTACAGAGAGGATGACGGTGATGAAGAGTACAGAGAGGATGAAGAGGATGTAGAAGATGACGATGATAACATTGATGATGAGAGTGTTAAGGATGATATTAGTGATAGTCCCCGCCGAAGAAAGCGTTCGAGTCGAAGGAAAAGGAGCTGGAGACCCGATGACATTGAAGATGTAAGCATTAGTGATGATGATGAC
GACGAGGACGATGATGATGATAGTGGCGACAAAAGAAAGTATCCAACTCGAGGAAAGAGGCGGGGAAAACCTGTAGTTGAACATCAATCAGGTTTGCGAAGAAGCAAGAGAGCCACTCGTGTGGATTATAGCCAATATGAGATGTCTAATTCCGAGGAAGAAAATTTGGAATCCGAGAGGCAATCAAAACCAAATGTCAA
GAAAAAAATGTCTAAAATGGAGTCAGATGTAAGTAACAGTTCCCACTCTGACATGAAAGTTGAAAGTTCTCTAGATGATGACTCAGACCAAGCTAGAGATGAAAAGCAGCTCATTACTGAAGATGCCCAGTCACGTGAAGCTTCCAAAGAAGAGCCTATCTTAAGGCCTTGGGAACAGTTTGGAGAACAATCGCTAGATT
TAAAGAGCCGGCACTTTATTGACCTAAATGAGGCAGCTCCACTCACAGGCTTTGATGACATTGTCTTAAACAACAGTACAAAACAGATAGTACCTGAGGATTCCATATCCAAGCAAGTCCGAAACAATGAGAATGATGATCGTTACTGATCATTTTCTTGCACAGGAGTACAGAGATGCAGTCATTTGTGGGGGGGAACA
TATTTTCATTTTCTTCATTATTTTGGACTTCTTTTTCACATGGTATCAGTCAGTTATCATTAATACAGGGTTCCAACTCAAGGTTAGAGTGTAGATCTGTCAATTTCTAAGATCAACTGTACAATATTCTTAGATTGTGTCAAATGCTGCTAAATTTACTCATTGTATGAGTTTTTTGCAGCGGGACGCTAGCTTTTCAT
TCTAATTGTAATTTATTTATAGAAAAATTTCTCGATCTTATATATATCCTGATTCAGTGCGGAGAAAGATGGTGCATGGAATTGAGCAAACTCAATTATAAAACATATCATATGTTTGGACTTCCCTGTACTGGATTGATTCAGAACATGTGCGTAAGCGAATATAACATAAAAGCATTATAGCA
>TRINITY_DN117096_c3_g1_i2 from sample A1 / Example unspliced isoform:TCTCACTTTAGAGTTGCAAGCCCAGACTTGTTAACAACCAAGGAGAGATTCTTCCACTTGTTAAATTGATGGTTAGAGTCGCAAGACAAGACTTCCATTAACTTGGATGAGTGAAGAGCGTACCCTGCTAGTGAACGGAGGTAGAGAACTTCATGAATATATTGCCAGAAACCTATGGTTCTCCATACGGAAAGCTAAGG
ATTTATTTACTATTGCAGACCGACAGCCAAACCAATAACCCAGGGTTTGGTTTGCTGGCTAACTAACCCTGGTTAGCCAGTATTATTTGTTCCCGCGGCGTCCTTCCATATATATATTCACTGCTGCAAATGTTCTGTTGTTCTTCTGCTACGCAAAACGCGCATTTTTTGGCTCAAAATCTCTGCAAACCATTGGCCGA
TGAGGGTTTTATACTCCGTTGAATTTGCCCAAGGTCTCTTGAACGTTTTGTGTTGCTGATAAATCTATGTTCGAATCCTGTGCCCGTGCACATCTGTGAAAATTTGTGGGGGGGTTTAACTTTTTCCTCCTCCCCCACTGCAATCTTCAGGGTTTCATAGAATCTCCGAGGGGGAGGAGGTCGCTGGAATGTCCGAAAGG
GTAAGCGGGAGGCCCCCAAAAGATCCAGAAATGGAAAAGAGCGAAGCCGAGGAGGAACAAAAAAGGAGCCGAGGAAGGCCCAAGCGATATCCCGATAGAGAAATTCTGACTGCAAAGGAAGAAGATCCGGAGACAGTTAAAGGTACAGGGAGGCCTCGGAGAATCCTACCTTCAGCTAAAATCTCACAGAGCCATGTAAA
AGCCGAGGGTTCTGAACATACGACTGCCAGTGCGTTGCCAGCAGCAGCCGGCGAGCAGGACGTGGTGATTTCGTCTCCGCCCGATCCGCAGAAGGAGCGAGGGCGCATACGCAACATGTTGGAGTTGGCGTCCGTGCTGAATTTTATACACGTTTTTAGACCCGTACTGAATATAAATACGGAGTTTTCAGCGGAGGAAC
TCGAAACTGCGCTGATTACGCCTAATAATACTCTGAGTCAGCTGCATATACAGCTTCTGAAGGGCATACCACCAGTGAGCAGGACATTAGGGAATAACGTGTGGGTTACGGCACTTTGCAAGAAGCTTGCAGATTGGTGGCCATGGGTTGCTGAAGGTGAACTTCCACTTGTTGCATGTCATGGGGAGGAGATTATAGCG
TACAAAAAGCTGGATCCTTGCACTCGTGTGTTGGTTTTGAAAGCTCTTTGTGAAATTCGTCTAGAGCAAGATGACATTTGGAAGTTTATTGATGATTCATTAAAGCACAACAACTTCCAGCTTTCTAGTTTCCGCAAAGCACGGTTAGGGGGTGATGCACATGGAACTTCATACTGGTATGATGCAGATTCCATTATTGG
GCATAGATTATATAGGGAAATACAGAAAATTGAAGTTAAAATCAAGCCAAAAGGAAAGGGTCGTTCAACAGAACCTTTAGTGAGTTGTCAGTGGGAAGCCATTGCGACTAACCTTGATGAATTCCTGGCAGTATCGgtatgtagctggaaaaaattgaccattttatgaacttttgtaaagcttttcatgaggtttacat
attgcaatctttcaaacttttatttttcctttttcctccctagataaagtacttactattatttagcaatggtattcattttattttccaatgtggtgcacagaataaagaaaataatttatattatagatatggcatgtattgctgtatatctcttgtaacatcttgacgacttgcagGAAAAATTTGCTTCCAGTAGA
AATAAGGTAGAGGCAGGGATTGGAAAGAAAATTAAGAATGATATTGTTCCTGTTCTTGAAGAACTTCAGAAGGTTTGTAATTCTCAGCGTATTCAAGATGAGTGCAAAAACAGTAATCAGTAAAAGGGGCAAGGGGTCAAAATTCATAATTACTCATTCTTTAATCAAGATTTATCTGCGTAATACATATCTATTTATTT
TGGTTTAACTTGTCCAGGGAGATAGAGGATGTCATACTTCAATTTTATGGTTTATTGACTGTCATTATCTGCAATATTTAAGAAGCCTGAATCTATGGTTACTTTTAATTTATTTGTTGTGAGGAGTCCTCATATGTCTAATCCAAAATTCGTGTCTTTACGAGATGTGTGGCTTAAGATCTTTTTCTTATACTGTCATT
ACTAACAGAAGAAAGAACGAGCACTGAAAAAACAGCAGAGGCAAGCCACACTTCTAGATAGCTTTTTTGTTGCACAAGGAGAGGCTATTGGTCGTTCCCGTCGTGACCGCAAACCTGTTAAGTACACATTTGGTATGCAATCTCTCCTTTCATGTCATATTATGTAAGATTAGGTCTATTTAGTACTTGCTATGAAGGTT
GGATATATCATATTAATAAGAATGTCTGCA
Intron 4 GTACTCTGCA ... TTATATGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 18.38 | 33.3 | 10 | 5 |
| A2 | 24 | 31.7 | 3 | 17 |
| A3 | 15.26 | 44.7 | 10 | 6 |
| A4 | 15.08 | 25.3 | 3 | 6 |
| A5 | 23.09 | 16.7 | 7 | 3 |
| A6 | 0 | 16 | 0 | 0 |
| A7 | 13.82 | 40.7 | 8 | 5 |
| A8 | 10.66 | 33.7 | 6 | 2 |
| A9 | 10.17 | 26.7 | 3 | 3 |
| A10 | 10.15 | 40 | 5 | 4 |
>TRINITY_DN96590_c0_g1_i4 from sample A4 / Example spliced isoformCCAGACTTGTTAACAACCAAGGAGAGATTCTTCCACTTGTTAAATTGATGGTTAGAGTCGCAAGACAAGACTTCCATTAACTTGGATGAGTGAAGAGCGTACCCTGCTAGTGAACGGAGGTAGAGAACTTCATGAATATATTGCCAGAAACCTATGGTTCTCCATACGGAAAGCTAAGGATTTATTTACTATTGCAGACC
GACAGCCAAACCAATAACCCAGGGTTTGGTTTGCTGGCTAACTAACCCTGGTTAGCCAGTATTATTTGTTCCCGCGGCGTCCTTCCATATATATATTCACTGCTGCAAATGTTCTGTTGTTCTTCTGCTACGCAAAACGCGCATTTTTTGGCTCAAAATCTCTGCAAACCATTGGCCGATGAGGGTTTTATACTCCGTTG
AATTTGCCCAAGGTCTCTTGAACGTTTTGTGTTGCTGATAAATCTATGTTCGAATCCTGTGCCCGTGCACATCTGTGAAAATTTGTGGGGGGGTTTAACTTTTTCCTCCTCCCCCACTGCAATCTTCAGGGTTTCATAGAATCTCCGAGGGGGAGGAGGTCGCTGGAATGTCCGAAAGGGTAAGCGGGAGGCCCCCAAAA
GATCCAGAAATGGAAAAGAGCGAAGCCGAGGAGGAACAAAAAAGGAGCCGAGGAAGGCCCAAGCGATATCCCGATAGAGAAATTCTGACTGCAAAGGAAGAAGATCCGGAGACAGTTAAAGGTACAGGGAGGCCTCGGAGAATCCTACCTTCAGCTAAAATCTCACAGAGCCATGTAAAAGCCGAGGGTTCTGAACATAC
GACTGCCAGTGCGTTGCCAGCAGCAGCCGGCGAGCAGGACGTGGTGATTTCGTCTCCGCCCGATCCGCAGAAGGAGCGAGGGCGCATACGCAACATGTTGGAGTTGGCGTCCGTGCTGAATTTTATACACGTTTTTAGACCCGTACTGAATATAAATACGGAGTTTTCAGCGGAGGAACTCGAAACTGCGCTGATTACGC
CTAATAATACTCTGAGTCAGCTGCATATACAGCTTCTGAAGGGCATACCACCAGTGAGCAGGACATTAGGGAATAACGTGTGGGTTACGGCACTTTGCAAGAAGCTTGCAGATTGGTGGCCATGGGTTGCTGAAGGTGAACTTCCACTTGTTGCATGTCATGGGGAGGAGATTATAGCGTACAAAAAGCTGGATCCTTGC
ACTCGTGTGTTGGTTTTGAAAGCTCTTTGTGAAATTCGTCTAGAGCAAGATGACATTTGGAAGTTTATTGATGATTCATTAAAGCACAACAACTTCCAGCTTTCTAGTTTCCGCAAAGCACGGTTAGGGGGTGATGCACATGGAACTTCATACTGGTATGATGCAGATTCCATTATTGGGCATAGATTATATAGGGAAAT
ACAGAAAATTGAAGTTAAAATCAAGCCAAAAGGAAAGGGTCGTTCAACAGAACCTTTAGTGAGTTGTCAGTGGGAAGCCATTGCGACTAACCTTGATGAATTCCTGGCAGTATCGGAAAAATTTGCTTCCAGTAGAAATAAGGTAGAGGCAGGGATTGGAAAGAAAATTAAGAATGATATTGTTCCTGTTCTTGAAGAAC
TTCAGAAGAAGAAAGAACGAGCACTGAAAAAACAGCAGAGGCAAGCCACACTTCTAGATAGCTTTTTTGTTGCACAAGGAGAGGCTATTGGTCGTTCCCGTCGTGACCGCAAACCTGTTAAGTACACATTTGGTATGCAATCTCTCCTTTCATGTCATATTATGTAAGATTAGGTCTATTTAGTACTTGCTATGAAGGTT
GGATATATCATAT
>TRINITY_DN96590_c0_g1_i1 from sample A4 / Example unspliced isoform:TTTTAGACCCGTACTGAATATAAATACGGAGTTTTCAGCGGAGGAACTCGAAACTGCGCTGATTACGCCTAATAATACTCTGAGTCAGCTGCATATACAGCTTCTGAAGGGCATACCACCAGTGAGCAGGACATTAGGGAATAACGTGTGGGTTACGGCACTTTGCAAGAAGCTTGCAGATTGGTGGCCATGGgtactct
gcagtcaaacaatttgattcttatatgatgtgatttattttccttggtagcaaggagaatgcattgtggcctattagtgcttaatcatctcatttgcgttttatatgcagGTTGCTGAAGGTGAACTTCCACTTGTTGCATGTCATGGGGAGGAGATTATAGCGTACAAAAAGCTGGATCCTTGCACTCGTGTGTTGGTT
TTGAAAGCTCTTTGTGAAATTCGTCTAGAGCAAGATGACATTTGGAAGTTTATTGATGATTCATTAAAGCACAACAACTTCCAGCTTTCTAGTTTCCGCAAAGCACGGTTAGGGGGTGATGCACATGGAACTTCATACTGGTA
Intron 5 GTTTGTAATT ... TTACTAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 28.57 | 45 | 15 | 18 |
| A2 | 34.33 | 44 | 3 | 23 |
| A3 | 20.83 | 38 | 6 | 10 |
| A4 | 42.11 | 11 | 2 | 8 |
| A5 | 47.37 | 10 | 3 | 9 |
| A6 | 28.57 | 5 | 1 | 2 |
| A7 | 20 | 88 | 2 | 22 |
| A8 | 19.67 | 49 | 0 | 12 |
| A9 | 16.18 | 57 | 2 | 11 |
| A10 | 17.54 | 47 | 6 | 10 |
>TRINITY_DN117096_c3_g1_i5 from sample A1 / Example spliced isoformTCTCACTTTAGAGTTGCAAGCCCAGACTTGTTAACAACCAAGGAGAGATTCTTCCACTTGTTAAATTGATGGTTAGAGTCGCAAGACAAGACTTCCATTAACTTGGATGAGTGAAGAGCGTACCCTGCTAGTGAACGGAGGTAGAGAACTTCATGAATATATTGCCAGAAACCTATGGTTCTCCATACGGAAAGCTAAGG
ATTTATTTACTATTGCAGACCGACAGCCAAACCAATAACCCAGGGTTTGGTTTGCTGGCTAACTAACCCTGGTTAGCCAGTATTATTTGTTCCCGCGGCGTCCTTCCATATATATATTCACTGCTGCAAATGTTCTGTTGTTCTTCTGCTACGCAAAACGCGCATTTTTTGGCTCAAAATCTCTGCAAACCATTGGCCGA
TGAGGGTTTTATACTCCGTTGAATTTGCCCAAGGTCTCTTGAACGTTTTGTGTTGCTGATAAATCTATGTTCGAATCCTGTGCCCGTGCACATCTGTGAAAATTTGTGGGGGGGTTTAACTTTTTCCTCCTCCCCCACTGCAATCTTCAGGGTTTCATAGAATCTCCGAGGGGGAGGAGGTCGCTGGAATGTCCGAAAGG
GTAAGCGGGAGGCCCCCAAAAGATCCAGAAATGGAAAAGAGCGAAGCCGAGGAGGAACAAAAAAGGAGCCGAGGAAGGCCCAAGCGATATCCCGATAGAGAAATTCTGACTGCAAAGGAAGAAGATCCGGAGACAGTTAAAGGTACAGGGAGGCCTCGGAGAATCCTACCTTCAGCTAAAATCTCACAGAGCCATGTAAA
AGCCGAGGGTTCTGAACATACGACTGCCAGTGCGTTGCCAGCAGCAGCCGGCGAGCAGGACGTGGTGATTTCGTCTCCGCCCGATCCGCAGAAGGAGCGAGGGCGCATACGCAACATGTTGGAGTTGGCGTCCGTGCTGAATTTTATACACGTTTTTAGACCCGTACTGAATATAAATACGGAGTTTTCAGCGGAGGAAC
TCGAAACTGCGCTGATTACGCCTAATAATACTCTGAGTCAGCTGCATATACAGCTTCTGAAGGGCATACCACCAGTGAGCAGGACATTAGGGAATAACGTGTGGGTTACGGCACTTTGCAAGAAGCTTGCAGATTGGTGGCCATGGGTTGCTGAAGGTGAACTTCCACTTGTTGCATGTCATGGGGAGGAGATTATAGCG
TACAAAAAGCTGGATCCTTGCACTCGTGTGTTGGTTTTGAAAGCTCTTTGTGAAATTCGTCTAGAGCAAGATGACATTTGGAAGTTTATTGATGATTCATTAAAGCACAACAACTTCCAGCTTTCTAGTTTCCGCAAAGCACGGTTAGGGGGTGATGCACATGGAACTTCATACTGGTATGATGCAGATTCCATTATTGG
GCATAGATTATATAGGGAAATACAGAAAATTGAAGTTAAAATCAAGCCAAAAGGAAAGGGTCGTTCAACAGAACCTTTAGTGAGTTGTCAGTGGGAAGCCATTGCGACTAACCTTGATGAATTCCTGGCAGTATCGGAAAAATTTGCTTCCAGTAGAAATAAGGTAGAGGCAGGGATTGGAAAGAAAATTAAGAATGATA
TTGTTCCTGTTCTTGAAGAACTTCAGAAGAAGAAAGAACGAGCACTGAAAAAACAGCAGAGGCAAGCCACACTTCTAGATAGCTTTTTTGTTGCACAAGGAGAGGCTATTGGTCGTTCCCGTCGTGACCGCAAACCTGTTAAGTACACATTTGATGATTACGACCGTTCTATTGATGAGGCAATACAAATGACAAAGAAG
ATTTGGCCATCTTCGGATCAGATTTTGAAAAGGCATATGGCAATGGATGAACATCCTGAAGCAAATGGTAATGAAAACGGTCATGGTAACAACCCTGAAAATAGATTATCGCCAGAGTCAAAAGATGGGAGTGAAGAATCTAATGTGCTCCGCACATCTGGTCCTTCCACACGCAGCACTAGGTTGAGACCTACAGCTCA
AAGAAGCATGGAAAGGAAATATATGGAAGATGCTTCTGACAATGATGTTGGCAGCAAGGATGAAATGTCTGTGGATGCAGTAACTGATGGAGGCATAAAAAGTAAAAAGAGTATAAGCATACCCAGTAGTTCAGATGGCGAGGATGGAAGCAGAGAGGATGCAGATGGCGACGACGAGTACAGAGAGGATGACGGTGATG
AAGAGTACAGAGAGGATGACGGTGATGAAGAGTACAGAGAGGATGAAGAGGATGTAGAAGATGACGATGATAACATTGATGATGAGAGTGTTAAGGATGATATTAGTGATAGTCCCCGCCGAAGAAAGCGTTCGAGTCGAAGGAAAAGGAGCTGGAGACCCGATGACATTGAAGATGTAAGCATTAGTGATGATGATGAC
GACGAGGACGATGATGATGATAGTGGCGACAAAAGAAAGTATCCAACTCGAGGAAAGAGGCGGGGAAAACCTGTAGTTGAACATCAATCAGGTTTGCGAAGAAGCAAGAGAGCCACTCGTGTGGATTATAGCCAATATGAGATGTCTAATTCCGAGGAAGAAAATTTGGAATCCGAGAGGCAATCAAAACCAAATGTCAA
GAAAAAAATGTCTAAAATGGAGTCAGATGTAAGTAACAGTTCCCACTCTGACATGAAAGTTGAAAGTTCTCTAGATGATGACTCAGACCAAGCTAGAGATGAAAAGCAGCTCATTACTGAAGATGCCCAGTCACGTGAAGCTTCCAAAGAAGAGCCTATCTTAAGGCCTTGGGAACAGTTTGGAGAACAATCGCTAGATT
TAAAGAGCCGGCACTTTATTGACCTAAATGAGGCAGCTCCACTCACAGGCTTTGATGACATTGTCTTAAACAACAGTACAAAACAGATAGTACCTGAGGATTCCATATCCAAGCAAGTCCGAAACAATGAGAATGATGATCGTTACTGATCATTTTCTTGCACAGGAGTACAGAGATGCAGTCATTTGTGGGGGGGAACA
TATTTTCATTTTCTTCATTATTTTGGACTTCTTTTTCACATGGTATCAGTCAGTTATCATTAATACAGGGTTCCAACTCAAGGTTAGAGTGTAGATCTGTCAATTTCTAAGATCAACTGTACAATATTCTTAGATTGTGTCAAATGCTGCTAAATTTACTCATTGTATGAGTTTTTTGCAGCGGGACGCTAGCTTTTCAT
TCTAATTGTAATTTATTTATAGAAAAATTTCTCGATCTTATATATATCCTGATTCAGTGCGGAGAAAGATGGTGCATGGAATTGAGCAAACTCAATTATAAAACATATCATATGTTTGGACTTCCCTGTACTGGATTGATTCAGAACATGTGCGTAAGCGAATATAACATAAAAGCATTATAGCA
>TRINITY_DN117096_c3_g1_i8 from sample A1 / Example unspliced isoform:TCTCACTTTAGAGTTGCAAGCCCAGACTTGTTAACAACCAAGGAGAGATTCTTCCACTTGTTAAATTGATGGTTAGAGTCGCAAGACAAGACTTCCATTAACTTGGATGAGTGAAGAGCGTACCCTGCTAGTGAACGGAGGTAGAGAACTTCATGAATATATTGCCAGAAACCTATGGTTCTCCATACGGAAAGCTAAGG
ATTTATTTACTATTGCAGACCGACAGCCAAACCAATAACCCAGGGTTTGGTTTGCTGGCTAACTAACCCTGGTTAGCCAGTATTATTTGTTCCCGCGGCGTCCTTCCATATATATATTCACTGCTGCAAATGTTCTGTTGTTCTTCTGCTACGCAAAACGCGCATTTTTTGGCTCAAAATCTCTGCAAACCATTGGCCGA
TGAGGGTTTTATACTCCGTTGAATTTGCCCAAGGTCTCTTGAACGTTTTGTGTTGCTGATAAATCTATGTTCGAATCCTGTGCCCGTGCACATCTGTGAAAATTTGTGGGGGGGTTTAACTTTTTCCTCCTCCCCCACTGCAATCTTCAGGGTTTCATAGAATCTCCGAGGGGGAGGAGGTCGCTGGAATGTCCGAAAGG
GTAAGCGGGAGGCCCCCAAAAGATCCAGAAATGGAAAAGAGCGAAGCCGAGGAGGAACAAAAAAGGAGCCGAGGAAGGCCCAAGCGATATCCCGATAGAGAAATTCTGACTGCAAAGGAAGAAGATCCGGAGACAGTTAAAGGTACAGGGAGGCCTCGGAGAATCCTACCTTCAGCTAAAATCTCACAGAGCCATGTAAA
AGCCGAGGGTTCTGAACATACGACTGCCAGTGCGTTGCCAGCAGCAGCCGGCGAGCAGGACGTGGTGATTTCGTCTCCGCCCGATCCGCAGAAGGAGCGAGGGCGCATACGCAACATGTTGGAGTTGGCGTCCGTGCTGAATTTTATACACGTTTTTAGACCCGTACTGAATATAAATACGGAGTTTTCAGCGGAGGAAC
TCGAAACTGCGCTGATTACGCCTAATAATACTCTGAGTCAGCTGCATATACAGCTTCTGAAGGGCATACCACCAGTGAGCAGGACATTAGGGAATAACGTGTGGGTTACGGCACTTTGCAAGAAGCTTGCAGATTGGTGGCCATGGGTTGCTGAAGGTGAACTTCCACTTGTTGCATGTCATGGGGAGGAGATTATAGCG
TACAAAAAGCTGGATCCTTGCACTCGTGTGTTGGTTTTGAAAGCTCTTTGTGAAATTCGTCTAGAGCAAGATGACATTTGGAAGTTTATTGATGATTCATTAAAGCACAACAACTTCCAGCTTTCTAGTTTCCGCAAAGCACGGTTAGGGGGTGATGCACATGGAACTTCATACTGGTAAAAATATGCAACTAGACATTT
GGTTGGTTAATCTTGATTCTTTTGTTATCTTGATATCATTAAAGATCATTTTAAGAATGATCATCTTTGGTTATGTTTTATGAATGATTATATTCTCATCTATGTTTTCAGACACTTTTGAATATTTTTATTTAGATACTATTACAGAATCCATGGCTCATATCTGATTTTTCAGTTTCTGTTTTAAGGTATGATGCAGA
TTCCATTATTGGGCATAGATTATATAGGGAAATACAGAAAATTGAAGTTAAAATCAAGCCAAAAGGAAAGGGTCGTTCAACAGAACCTTTAGTGAGTTGTCAGTGGGAAGCCATTGCGACTAACCTTGATGAATTCCTGGCAGTATCGGTATGTAGCTGGAAAAAATTGACCATTTTATGAACTTTTGTAAAGCTTTTCA
TGAGGTTTACATATTGCAATCTTTCAAACTTTTATTTTTCCTTTTTCCTCCCTAGATAAAGTACTTACTATTATTTAGCAATGGTATTCATTTTATTTTCCAATGTGGTGCACAGAATAAAGAAAATAATTTATATTATAGATATGGCATGTATTGCTGTATATCTCTTGTAACATCTTGACGACTTGCAGGAAAAATTT
GCTTCCAGTAGAAATAAGGTAGAGGCAGGGATTGGAAAGAAAATTAAGAATGATATTGTTCCTGTTCTTGAAGAACTTCAGAAGgtttgtaattctcagcgtattcaagatgagtgcaaaaacagtaatcagtaaaaggggcaaggggtcaaaattcataattactcattctttaatcaagatttatctgcgtaatacat
atctatttattttggtttaacttgtccagggagatagaggatgtcatacttcaattttatggtttattgactgtcattatctgcaatatttaagaagcctgaatctatggttacttttaatttatttgttgtgaggagtcctcatatgtctaatccaaaattcgtgtctttacgagatgtgtggcttaagatctttttct
tatactgtcattactaacagAAGAAAGAACGAGCACTGAAAAAACAGCAGAGGCAAGCCACACTTCTAGATAGCTTTTTTGTTGCACAAGGAGAGGCTATTGGTCGTTCCCGTCGTGACCGCAAACCTGTTAAGTACACATTTGATGATTACGACCGTTCTATTGATGAGGCAATACAAATGACAAAGAAGATTTGGCCA
TCTTCGGATCAGATTTTGAAAAGGCATATGGCAATGGATGAACATCCTGAAGCAAATGGTAATGAAAACGGTCATGGTAACAACCCTGAAAATAGATTATCGCCAGAGTCAAAAGATGGGAGTGAAGAATCTAATGTGCTCCGCACATCTGGTCCTTCCACACGCAGCACTAGGTTGAGACCTACAGCTCAAAGAAGCAT
GGAAAGGAAATATATGGAAGATGCTTCTGACAATGATGTTGGCAGCAAGGATGAAATGTCTGTGGATGCAGTAACTGATGGAGGCATAAAAAGTAAAAAGAGTATAAGCATACCCAGTAGTTCAGATGGCGAGGATGGAAGCAGAGAGGATGCAGATGGCGACGACGAGTACAGAGAGGATGACGGTGATGAAGAGTACA
GAGAGGATGACGGTGATGAAGAGTACAGAGAGGATGAAGAGGATGTAGAAGATGACGATGATAACATTGATGATGAGAGTGTTAAGGATGATATTAGTGATAGTCCCCGCCGAAGAAAGCGTTCGAGTCGAAGGAAAAGGAGCTGGAGACCCGATGACATTGAAGATGTAAGCATTAGTGATGATGATGACGACGAGGAC
GATGATGATGATAGTGGCGACAAAAGAAAGTATCCAACTCGAGGAAAGAGGCGGGGAAAACCTGTAGTTGAACATCAATCAGGTTTGCGAAGAAGCAAGAGAGCCACTCGTGTGGATTATAGCCAATATGAGATGTCTAATTCCGAGGAAGAAAATTTGGAATCCGAGAGGCAATCAAAACCAAATGTCAAGAAAAAAAT
GTCTAAAATGGAGTCAGATGTAAGTAACAGTTCCCACTCTGACATGAAAGTTGAAAGTTCTCTAGATGATGACTCAGACCAAGCTAGAGATGAAAAGCAGCTCATTACTGAAGATGCCCAGTCACGTGAAGCTTCCAAAGAAGAGCCTATCTTAAGGCCTTGGGAACAGTTTGGAGAACAATCGCTAGATTTAAAGAGCC
GGCACTTTATTGACCTAAATGAGGCAGCTCCACTCACAGGCTTTGATGACATTGTCTTAAACAACAGTACAAAACAGATAGTACCTGAGGATTCCATATCCAAGCAAGTCCGAAACAATGAGAATGATGATCGTTACTGATCATTTTCTTGCACAGGAGTACAGAGATGCAGTCATTTGTGGGGGGGAACATATTTTCAT
TTTCTTCATTATTTTGGACTTCTTTTTCACATGGTATCAGTCAGTTATCATTAATACAGGGTTCCAACTCAAGGTTAGAGTGTAGATCTGTCAATTTCTAAGATCAACTGTACAATATTCTTAGATTGTGTCAAATGCTGCTAAATTTACTCATTGTATGAGTTTTTTGCAGCGGGACGCTAGCTTTTCATTCTAATTGT
AATTTATTTATAGAAAAATTTCTCGATCTTATATATATCCTGATTCAGTGCGGAGAAAGATGGTGCATGGAATTGAGCAAACTCAATTATAAAACATATCATATGTTTGGACTTCCCTGTACTGGATTGATTCAGAACATGTGCGTAAGCGAATATAACATAAAAGCATTATAGCA
Intron 6 GTAGGCAGTT ... TCCATGCAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 34.82 | 20 | 6.3 | 7.4 |
| A2 | 39.66 | 22.5 | 7.3 | 14 |
| A3 | 35.12 | 23 | 4.7 | 10.8 |
| A4 | 40.46 | 17.8 | 11.3 | 6 |
| A5 | 42.34 | 12 | 5.3 | 4.4 |
| A6 | 63.29 | 18 | 30 | 28.2 |
| A7 | 56.68 | 29 | 34 | 31.4 |
| A8 | 57.02 | 33.3 | 38.7 | 45.6 |
| A9 | 64.37 | 22.3 | 34.3 | 38.8 |
| A10 | 64 | 29 | 52.3 | 42.4 |
>TRINITY_DN47538_c0_g2_i3 from sample A7 / Example spliced isoformACCAATTGTGGACAACAACCATTGTAGCATATGCCATGCATGGGCGTGGCAAGGTAGCCCTCAAACTCTTTGAACAAATGCAACAATCAGGGCATACCACCAGTGAGCAGGACGTTAGGGAATAACATGTGGGTTATGAAACTGTGCAAGAAGCTTGCAGATTGGTGGCCATGGGTTGTTGAAGGTGAACTTCCACTTGT
TGCATGTCATGGGAGGAGATTATAGCGTACAAAAAGCTGAATCCTTGCACCCGTGTGTTGATTTTGAAAGCTCTTTGTGAAATTCGTGTGGAGGAATTATAATATGAACTGGGCCATGCTAGTTTGGTCTCCCATTCGACACATCATTGTTGGATGCTCGGAGAACCTCTCTGTTGTTATTTTTTTCATGGACTCACTAA
GACAACTAGGCTTGAATTTTCTAGAATGTGAGGAGTTGGCAAATAATAACTTTTCGAACGAATTCATGAAACCACTTGTAATTGTGATGCAAAAGAGCAACTTTGTAGAAATTAGGGAACTTGCCATTCGATGTGTTTCCAAATGGTTTTGGCTTGTGTCAACAATGTCAAGTTGGGATGGAAAAGCATGTTTTGCACTG
TATGATTTTCATTCTTTGTTCAAGTTGTATACCATTTCTTTGCTTTGAATAGTACATGGGCCTATAATGTTGTTGTAGATAAATATTAAAA
>TRINITY_DN47538_c0_g2_i2 from sample A7 / Example unspliced isoform:ACCAATTGTGGACAACAACCATTGTAGCATATGCCATGCATGGGCGTGGCAAGGTAGCCCTCAAACTCTTTGAACAAATGCAACAATCAGGGCATACCACCAGTGAGCAGGACGTTAGGGAATAACATGTGGGTTATGAAACTGTGCAAGAAGCTTGCAGATTGGTGGCCATGGGTTGTTGAAGGTGAACTTCCACTTGT
TGCATGTCATGGgtaggcagttcgatcttggaataaatcactttcattcttgatgtggaacaaaatagtgatacaattgtatcttttccatgcaagGAGGAGATTATAGCGTACAAAAAGCTGAATCCTTGCACCCGTGTGTTGATTTTGAAAGCTCTTTGTGAAATTCGTGTGGAGGTATGATAAAATATCCTTTATTT
TGGTAGTGCTTTACAATTGTAATCACTCTGAAGAGAGTAGGATGTTATATTTTTAGAATGAGGGGTGGGACATACAGTTCATTTTTTTCCCTTAATATTTTGTCTCAACGATATTACTCAGAGTTCAGGGCCCTCTTTTTGCAGAGTAATTTTGAATTTATTACTTTCGATTATTACCCTGCTTTAGTTGTGTGTGTTAT
TATTGGTTTTGTTCTGATAGTAGCTTGCGAAATAATGGAATTGGTTTTCAGTGTTGACATTCTGCCTAGACTTCGG