NA ----> NA
Intron 1 ATGAAAGGCC ... ACGACTCCAC
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 51.11 | 11 | 16 | 7 |
| A2 | 40.54 | 11 | 14 | 1 |
| A3 | 44.44 | 10 | 13 | 3 |
| A4 | 46.67 | 4 | 3 | 4 |
| A5 | 50 | 1 | 0 | 2 |
| A6 | 60 | 2 | 1 | 5 |
| A7 | 52.94 | 16 | 16 | 20 |
| A8 | 50.28 | 44 | 34 | 55 |
| A9 | 61.4 | 11 | 23 | 12 |
| A10 | 44.74 | 21 | 20 | 14 |
>TRINITY_DN37993_c1_g1_i2 from sample A9 / Example spliced isoformGCAAAAATATGGATTTCTCTGTGCATGCGCACTGCCGAAAAAAGGGTGATATGACAGAGTTCAACTAAATCAGGCATCAAATAATGATTGCATCAGAAGGCCTCGAGAAGTGGTTTTATTATTAAAAATTGTGCCATTTAACATGTATTATCTATTCATTATAGAATATCAGTTCATTCCATTTCAATTTATAACGACTC
TGTCTTATGCTAACCCACGATCGGTTGTGAGATCGTGGGTAGCGCCCGAGATACATGCATTAGTTTATGGTTGATTTTCTACCAGGAAAATAGTTCCCTCTTGAGTGTGGCTTAATATTTACATCACTCTGTTCAGCTTTCCCAGTGCATGTTCGCAGAGATGAAGAGGGCGAGTGGCCCAAGTGCAAATTATTCAGGTT
CGAGCCAAAAAATATGGAATGGACCAGAACGCTCCCGCATTGTGCACAGAAGTTAAAGGAGGTTGGCTGGTATTCAATGTGTGAGAAAATTCAGGGTTACAATGTTGAAGTCACGGAGCATTTCACTTTGAATTTCAAAGGTTCAACAGTCGATTTTGGGGGCTTCGAGTTTCAAGTCCCTGAGAGATCTATCTCGACTA
CAATTGGTGTGGCTGCTGAGGGTGAAAAATGGTTTAAAAAGCGACCTGTAGACACGGATTACAATCAGTTCCTCCTTCCCCAACACAAAAATCCCAATTGGAGCAAAGGAATTCACAGAAGTTTCCTAAAAGAAGAATGGCGGGACATCCTGAGTATTATACAGCGTTATGTTACCTATGAAGGGAGGTTTGCCACTGTT
TTCATGTATCATTTAAGATTCCTAGTTCATATAGCAGGAATTAAAAAGCTCAATTTGCCCTATTATCTCCTAAGGAGTCTTACCAAAATGGCTACCAAAGTCCAAAAACACCCTCAGCATACTAGTCACAGTGTTTTTCATCATGGCTTGGTGAAATTACTTGTGCTTGAAGAATTGAAGAAACAGGACAGGTCTTGGTC
CCATTTCTTGTTTTGGTCAAGCTTTAAGCTTGAACAGGCAGTGGTTGATGGGGATAAGGGTAATATGGATGATAAAAAGAGGAAAAAACCTAAGACTTCAAAGAGATTACCAGAACAACCTTTGAGTAGCGACCAAGGTGGAAAAGATGTACAGGAAGAAGTTTCAGAACATGAAGAACAAAATTCCAAATCTGAACCTG
TGGTGGAAGAAGTAAGTTCGCAGATAATAGCTAGGAGTGATAGGGAAAGAGTACATTCAGAAGTCAAATCCTTGAAAACTGCTCAAAGTCAAGGGATTTCACTTCCAGAAGATAGTGTTCAGATCACAAGACAGGGGAAGAAAGCCATTAACATCGATGAGATGGTTAAAGAAATTGAAGCAAGGTATATCTGAACAGCC
TCACTCTGATCCTGAAATACTTGATAGTTTTGTCATGATTGAGACCAGTAAATGGAGGCCCAGAACTCGAGCCACAAACAAACTGAGATTTAATATGAAAGCACTGCTAAACCCTAAGCTTAAAAATAATGTTATAATTGGTATTGAAGATTCCTCAAATGAAGAGGATAATAAATCTAAGAAGGTGGAGGAATTGTTGA
CTGGGGTTTTAGAGAACATTGAAAAGGGCCTCAAAGAATTTCCAGTTCTTTTGGAGGGAAGTCATGCAATTAAAGACAATGTTGGAATAGAAGATTCAGAGGATGAAGTAGTACCAGACCCTGTGGATTTTGGTGACAGAGAAAAATTAATGAATATACATAGAAGGCTCGAGATTACTACAGAGGTTCCTAATTATCCT
AGCTTGTTTTTTGTAAAGTTAACATGTACCCTTTGAATGAATTATAGGACCACAGCTGGCAATCACCTACAGGATCGATCCAGATGAGTTGAAAGCATATAGATCAAATAAAAGCATGCAGTTTTAATTGTCAAATTTAAATTGTAACTATATTGCAATATACAATCCTGAGTTTTTGGATCAGGGAAACTGTTTTAGAA
GCTTGATTTTGTTATAAATTGAAAAATGTAATATGATAGAGAGAGTTAGTGATGAGGGTCGAGAGGTTATTTTTTAGAGTTTAAGACATATGCTCTGTTGATTTTAAAGAGCTGTAACTGAAAGATGAGATTTTATATATTAAGAGCCCA
>TRINITY_DN37993_c1_g1_i1 from sample A9 / Example unspliced isoform:GCAAAAATATGGATTTCTCTGTGCATGCGCACTGCCGAAAAAAGGGTGATATGACAGAGTTCAACTAAATCAGGCATCAAATAATGATTGCATCAGAAGGCCTCGAGAAGTGGTTTTATTATTAAAAATTGTGCCATTTAACATGTATTATCTATTCATTATAGAATATCAGTTCATTCCATTTCAATTTATAACGACTC
TGTCTTATGCTAACCCACGATCGGTTGTGAGATCGTGGGTAGCGCCCGAGATACATGCATTAGTTTATGGTTGATTTTCTACCAGGAAAATAGTTCCCTCTTGAGTGTGGCTTAATATTTACATCACTCTGTTCAGCTTTCCCAGTGCATGTTCGCAGAGATGAAGAGGGCGAGTGGCCCAAGTGCAAATTATTCAGGTT
CGAGCCAAAAAATATGGAATGGACCAGAACGCTCCCGCATTGTGCACAGAAGTTAAAGGAGGTTGGCTGGTATTCAATGTGTGAGAAAATTCAGGGTTACAATGTTGAAGTCACGGAGCATTTCACTTTGAATTTCAAAGGTTCAACAGTCGATTTTGGGGGCTTCGAGTTTCAAGTCCCTGAGAGATCTATCTCGACTA
CAATTGGTGTGGCTGCTGAGGGTGAAAAATGGTTTAAAAAGCGACCTGTAGACACGGATTACAATCAGTTCCTCCTTCCCCAACACAAAAATCCCAATTGGAGCAAAGGAATTCACAGAAGTTTCCTAAAAGAAGAATGGCGGGACATCCTGAGTATTATACAGCGTTATGTTACCTATGAAGGGAGGTTTGCCACTGTT
TTCATGTATCATTTAAGATTCCTAGTTCATATAGCAGGAATTAAAAAGCTCAATTTGCCCTATTATCTCCTAAGGAGTCTTACCAAAATGGCTACCAAAGTCCAAAAACACCCTCAGCATACTAGTCACAGTGTTTTTCATCATGGCTTGGTGAAATTACTTGTGCTTGAAGAATTGAAGAAACAGGACAGGTCTTGGTC
CCATTTCTTGTTTTGGTCAAGCTTTAAGCTTGAACAGGCAGTGGTTGATGGGGATAAGGGTAATATGGATGATAAAAAGAGGAAAAAACCTAAGACTTCAAAGAGATTACCAGAACAACCTTTGAGTAGCGACCAAGGTGGAAAAGATGTACAGGAAGAAGTTTCAGAACATGAAGAACAAAATTCCAAATCTGAACCTG
TGGTGGAAGAAGTAAGTTCGCAGATAATAGCTAGGAGTGATAGGGAAAGAGTACATTCAGAAGTCAAATCCTTGAAAACTGCTCAAAGTCAAGGGATTTCACTTCCAGAAGATAGTGTTCAGATCACAAGACAGGGGAAGAAAGCCATTAACATCGATGAGATGGTTAAAGAAATTGAAGCAAGGTATATCTGAACAGCC
TCACTCTGATCCTGAAATACTTGATAGTTTTGTCATGATTGAGACCAGTAAATGGAGGCCCAGAACTCGAGCCACAAACAAACTGAGATTTAATATGAAAGCACTGCTAAACCCTAAGCTTAAAAATAATGTTATAATTGGTATTGAAGATTCCTCAAATGAAGAGGATAATAAATCTAAGAAGGTGGAGGAATTGTTGA
CTGGGGTTTTAGAGAACATTGAAAAGGGCCTCAAAGAATTTCCAGTTCTTTTGGAGGGAAGTCATGCAATTAAAGACAATGTTGGAATAGAAGATTCAGAGGATGAAGTAGTACCAGACCCTGTGGATTTTGGTGACAGAGAAAAATTAATGAATATACatgaaaggccgaatcttctaagagacaagaagtggaggttg
aaactgatcattcaatgaaaatcctcattggtgaagaccattctgaagacatgttggatattgaaagccttaaaaaaaaacttcagggatataaggaacagaataggcatctgaatgaatctaatgataaaatcatgcaagcgaatcagatgttgaggaaagatttacaggaaatgaatacaaattatgaggagttaaat
caattggctcaagaagcagttaacgaaaggaaagcaacgcagcataggaatgtggaactttctaaacagaatgaagagcttctaaagagacttcgagctacagagaaagaatgttctcgattgcagaagaaatcccaagctttggatggcttagcaattctagcagaggcaactcgtcgggtttgatcagtcaacattca
gttttgcaaggctccacgtttcatccacgtgtcatgaacagatcagacattttgggaaacgactccacATAGAAGGCTCGAGATTACTACAGAGGTTCCTAATTATCCTAGCTTGTTTTTTGTAAAGTTAACATGTACCCTTTGAATGAATTATAGGACCACAGCTGGCAATCACCTACAGGATCGATCCAGATGAGTTG
AAAGCATATAGATCAAATAAAAGCATGCAGTTTTAATTGTCAAATTTAAATTGTAACTATATTGCAATATACAATCCTGAGTTTTTGGATCAGGGAAACTGTTTTAGAAGCTTGATTTTGTTATAAATTGAAAAATGTAATATGATAGAGAGAGTTAGTGATGAGGGTCGAGAGGTTATTTTTTAGAGTTTAAGACATAT
GCTCTGTTGATTTTAAAGAGCTGTAACTGAAAGATGAGATTTTATATATTAAGAGCCCA
Intron 2 GTTTGGTTAA ... TGCTTGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 75.44 | 7 | 22 | 21 |
| A2 | 100 | 0 | 16 | 13 |
| A3 | 73.68 | 5 | 12 | 16 |
| A4 | 69.23 | 4 | 5 | 13 |
| A5 | 84.62 | 1 | 8 | 3 |
| A6 | 33.33 | 1 | 1 | 0 |
| A7 | 73.91 | 3 | 4 | 13 |
| A8 | 66.67 | 3 | 4 | 8 |
| A9 | 100 | 0 | 4 | 7 |
| A10 | 100 | 0 | 2 | 1 |
>TRINITY_DN117092_c1_g1_i5 from sample A3 / Example spliced isoformGGTAGAGATGGATTGAGGGATCGCTAGCGTAACACATCAAAGAGCTGAAAAGGTCTTGCCGAAACCAGGCAGAGAGGCAAGCTTGAGGGGGGCGCACCACTTGAGGGAAACTTCATTTTTGCTCCCTCCCGGGAGAGGGGCACTAGTGATCTCTTGGGCATTTTGGTTTCAAGTCGGGACTTCACCATATATCTTCTATT
TGATTATTGAGAGAATAACCTTCACCATCTCGGCATTCTTCCATGATAAACAGCTTTCCCAGTGCATGTTCGCAGAGATGAAGAGGGCGAGTGGCCCAAGTGCAAATTATTCAGGTTCGAGCCAAAAAATATGGAATGGACCAGAACGCTCCCGCATTGTGCACAGAAGTTAAAGGAGGTTGGCTGGTATTCAATGTGTG
AGAAAATTCAGGGTTACAATGTTGAAGTCACGGAGCATTTCACTTTGAATTTCAAAGGTTCAACAGTCGATTTTGGGGGCTTCGAGTTTCAAGTCCCTGAGAGATCTATCTCGACTACAATTGGTGTGGCTGCTGAGGGTGAAAAATGGTTTAAAAAGCGACCTGTAGACACGGATTACAATCAGTTCCTCCTTCCCCAA
CACAAAAATCCCAATTGGAGCAAAGGAATTCACAGAAGTTTCCTAAAAGAAGAATGGCGGGACATCCTGAGTATTATACAGCGTTATGTTACCTATGAAGGGAGGTTTGCCACTGTTTTCATGTATCATTTAAGATTCCTAGTTCATATAGCAGGAATTAAAAAGCTCAATTTGCCCTATTATCTCCTAAGGAGTCTTAC
CAAAATGGCTACCAAAGTCCAAAAACACCCTCAGCATACTAGTCACAGTGTTTTTCATCATGGCTTGGTGAAATTACTTGTGCTTGAAGAATTGAAGAAACAGGACAGGTCTTGGTCCCATTTCTTGTTTTGGTCAAGCTTTAAGCTTGAACAGGCAGTGGTTGATGGGGATAAGGGTAATATGGATGATAAAAAGAGGA
AAAAACCTAAGACTTCAAAGAGATTACCAGAACAACCTTTGAGTAGCGACCAAGGTGGAAAAGATGTACAGGAAGAAGTTTCAGAACATGAAGAACAAAATTCCAAATCTGAACCTGTGGTGGAAGAAGTAAGTTCGCAGATAATAGCTAGGAGTGATAGGGAAAGAGTACATTCAGAAGTCAAATCCTTGAAAACTGCT
CAAAGTCAAGGGATTTCACTTCCAGAAGATAGTGTTCAGATCACAAGACAGGGGAAGAAAGCCATTAACATCGATGAGATGGTTAAAGAAATTGAAGCAAGGTATATCTGAACAGCCTCACTCTGATCCTGAAATACTTGATAGTTTTGTCATGATTGAGACCAGTAAATGGAGGCCCAGAACTCGAGCCACAAACAAAC
TGAGATTTAATATGAAAGCACTGCTAAACCCTAAGCTTAAAAATAATGTTATAATTGGTATTGAAGATTCCTCAAATGAAGAGGATAATAAATCTAAGAAGGTGGAGGAATTGTTGACTGGGGTTTTAGAGAACATTGAAAAGGGCCTCAAAGAATTTCCAGTTCTTTTGGAGGGAAGTCATGCAATTAAAGACAATGTT
GGAATAGAAGATTCAGAGGATGAAGTAGTACCAGACCCTGTGGATTTTGGTGACAGAGAAAAATTAATGAATATACATGAAAGGCCGAATCTTCTAAGAGACAAGAAGTGGAGGTTGAAACTGATCATTCAATGAAAATCCTCATTGGTGAAGACCATTCTGAAGACATGTTGGATATTGAAAGCCTTAAAAAAAAACTT
CAGGGATATAAGGAACAGAATAGGCATCTGAATGAATCTAATGATAAAATCATGCAAGCGAATCAGATGTTGAGGAAAGATTTACAGGAAATGAATACAAATTATGAGGAGTTAAATCAATTGGCTCAAGAAGCAGTTAACGAAAGGAAAGCAACGCAGCATAGGAATGTGGAACTTTCTAAACAGAATGAAGAGCTTCT
AAAGAGACTTCGAGCTACAGAGAAAGAATGTTCTCGATTGCAGAAGAAATCCCAAGCTTTGGATGGCTTAGCAATTCTAGCAGAGGCAACTCGTCGGGTTTGATCAGTCAACATTCAGTTTTGCAAGGCTCCACGTTTCATCCACGTGTCATGAACAGATCAGACATTTTGGGAAACGACTCCACATAGAAGGCTCGAGA
TTACTACAGAGGTTCCTAATTATCCTAGCTTGTTTTTTGTAAAGTTAACATGTACCCTTTGAATGAATTATAGGACCACAGCTGGCAATCACCTACAGGATCGATCCAGATGAGTTGAAAGCATATAGATCAAATAAAAGCATGCAGTTTTAATTGTCAAATTTAAATTGTAACTATATTGCAATATACAATCCTGAGTT
TTTGGATCAGGGAAACTGTTTTAGAAGCTTGATTTTGTTATAAATTGAAAAATGTAATATGATAGAGAGAGTTAGTGATGAGGGTCGAGAGGTTATTTTTTAGAGTTTAAGACATATGCTCTGTTGATTTTAAAGAGCTGTAACTGAAAGATGAGATTTTATATATTAAGAGCC
>TRINITY_DN117092_c1_g1_i2 from sample A3 / Example unspliced isoform:GGTAGAGATGGATTGAGGGATCGCTAGCGTAACACATCAAAGAGCTGAAAAGGTCTTGCCGAAACCAGGCAGAGAGGCAAGCTTGAGGGGGGCGCACCACTTGAGGGAAACTTCATTTTTGCTCCCTCCCGgtttggttaaacagggagtgattttatcttagcatttttcacttccttatcattagtctctcgcttttt
agttgctcattttgtttgtcatgcaaactgattttatctttgcttggcagGGAGAGGGGCACTAGTGATCTCTTGGGCATTTTGGTTTCAAGTCGGGACTTCACCATATATCTTCTATTTGATTATTGAGAGAATAACCTTCACCATCTCGGCATTCTTCCATGATAAACAGGTAAGTACACTATCTATCTTTTCTCTTG
TTCATTTTCCATTTCAAGAAGTCATGCAAAATAACTAAGTTAAAAGTAAAACCCCCAGTTCCTCAAAGTCTTAGT