sp|Q9ZPY8|AIB_ARATH ----> Transcription factor ABA-INDUCIBLE bHLH-TYPE

Intron 1 GTATGATTAA ... CGATTAGCAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	9.09	10	0	1
A2	0	6	0	0
A3	0	1	0.5	0
A4	50	1	0	1
A5	-1	0	0	0
A6	0	2	1	0
A7	26	37	4.5	13
A8	10.71	25	2.5	3
A9	13.95	37	4.5	6
A10	21.62	29	3.5	8

>TRINITY_DN42827_c0_g1_i2 from sample A7 / Example spliced isoform

TATCAACTTGCAATTTTTCATCCTCTTACCTCACGTAACGGCAATCACACCTCTTGGACTTCAATCTTTCTTCCTTGAAACAATGTATATGTAGCTCTCTAGGCCTTATTGGCTCCATTGGCCCTTCAGATTGTTGGAAATTTTGTTGTGGAAAACTGCTCTGCTTGAATTAACAGTAATGGATGGTTCATGTGGCTCAT
GGGAGAGTAGTTCATATAACAGTCGGTTTAATGGACCAGTCAAGGATAAGATGGATAGCCAACTGCAGATATCAGATTTGTTTGAACTTCAAGGAGATTCATATTTAGAATGTGAATTTCCAGAGCTCCACATTAATGGAGCAGATTTAACGCCAGCTGGGGCTTCCTCGGGATTTATGCAGACAAGCATAAGTTCTGAA
TTAGTTGCAGCCAGAGATGTAACTTCTTCCAAAACAAAACACAGAACAGGAATTGAAGCATCAGAAATAAATCATATAGACCCAAATAGTGATCGTGCACCTGGTTCTTTTCTTGCTATGAATCGGTCGTCGTGGCAAGCCAGTGGTGTCCGAAAGGCTAAGAAACGTAAGGCCTTTTCCTCTAAAACATCGATGGTAGA
TAATAATTTATCCCCTTGTAGAGATGCCCTTTACCGAACACAGACTCAAAGAAGTAATCACATAATGGCAGAAAGACACAGAAGGGAGGATATGAATGAAAAGTTTTCAATTCTGAGAACTATTCTGCCAAAAATAACAAAGAAAGACAAAGCCTCAATCGTGACAGACACAATAAATTATGTTAGTGAACTTGAAAAGA
AGATTAGACAGCTTGAAGATTTCAAATCCCGAACTTCAAGAAAGGGATCCAGGAAGAACTACTCGAATGGCAGCCATGAAAAGTTGGAGATAAAACTGAATCATAATCCGGACATTGAAATACAGAGCATGGGAAACCGAGCTGTAATTCAAGTTATGTGCCCGCGTCGTAGCCGTGGCCTGCTCCTACGTACTTTCGAA
GCTTTGGATGATTGTAAAGCAGATGTGTTGCAATCCAATATGATCACTTTGGGGAACATCACCCTCCAATATTTCACTGTTCAAGTATGTCTCTGGAGCTCAAAACCCACTATGATACAATATAAATATTATGATAGAATATAAATATTTAAGCAGATATTTTCTTGCTAGAGGTCATCTTTCATGAATTTGATACTTGT
TATTTCTTGCTAGAGGTCATCTTTCATGAATTTGATACTTGTTTGGACATTGCATGGCTTCATCTCAATGGCAAGTATTGGTATCTAGTTATCTTCTTGCTGTTGCAGTTGCTTATATATATATGGTTTCTCTAGATTGGAGGAAAACAGCAGTTATTTATATATATATATGGTTTCTCTAGATTGGAGGAAGATGAGAC
AATGTCTAAGTTAATTTTGTGGAAGTTTTTGTAATTCTGATTCATGGATGGACAGTTTTAACTAAAAGAAGACCAGTGATAACAGGTAGCTGAGACATAAATGATTTTAACTATACACCAAGAACAAGAAACAGGTAATTAGTTCAGGGCATTTAACTT

>TRINITY_DN42827_c0_g1_i3 from sample A7 / Example unspliced isoform:

CTATTCTGCCAAAAATAACAAAGgtatgattaagctcttttcagtacattggttatgttttttgctttattattctctgattttagaagagtttgttgttcccgattagcagAAAGACAAAGCCTCAATCGTGACAGACACAATAAATTATGTTAGTGAACTTGAAAAGAAGATTAGACAGCTTGAAGATTTCAAATCCC
GAACTTCAAGAAAGGGATCCAGGAAGAACTACTCGAATGGCAGCCATGAAAAGTTGGAGATAAAACTGAATCATAATCCGGACATTGAAATACAGAGCATGGGAAACCGAGCTGTAATTCAAGTTATGTGCCCGCGTCGTAGCCGTGGCCTGCTCCTACGTACTTTCGAAGCTTTGGATGATTGTAAAGCAGATGTGTTG
CAATCCAATATGATCACTTTGGGGAACATCACCCTCCAATATTTCACTGTTCAATTAATTCCTGGAGTGACAGCAAGCGATGATGAGATAATCGGTGCTCTTGAAGAAGCCACCCGATAACCGTCGACAATCTCTTCACTACTCGAAAGCAGCCGCCGCCAGCAATTGCAACTCATCACTACTCCACTGTTATTCGATGA
ATTTACATCAATACTCTCTGGTGACCGTTACGTACAATCCAGAGCAAATGTACGTAACTGCTATGTTTCTTCATGAAATAACATTTATGGAAACAAATTCATGAAAACGGATTGCAAAATATAGTTCAAGATTCGAATTTGAACAGATTATGTTGTCTGGATCTTTTAGATGATGATTAAAGTGCTTAAATAAATGTTTC
TTCAAGACATAGGAATTGTACTTCAAGTCTAGAATTATGACAAATCCAAAGGTCTGGCCGTATTCAATGGTATTCAATCTTGTCCAGCGTTTTTAAGTATCATTTGAATCATGGGTTCGGTGACATTCTATATTCTGTATTAATGGCGACCTTCTGCGTAATTTCAAATCGACTTCAACGTTGGTCTTGAATCTTAGTTA
CAGACGTTCGCAATTAAGTGAATGAATGGTTACGAGTTTGTGGAAAAAGGGG

Intron 2 GTATGTCTCT ... CTTGCTAGAG

Sample	Retention score (%)	Exon junction reads	5'ss reads	3'ss reads
A1	100	0	1	0
A2	50	1	1	0
A3	-1	0	0	0
A4	0	1	0	0
A5	-1	0	0	0
A6	50	1	1	0
A7	50	2	2	3
A8	47.83	12	11	0
A9	46.67	8	7	0
A10	45.45	6	5	0

>TRINITY_DN42827_c0_g1_i4 from sample A7 / Example spliced isoform

TATCAACTTGCAATTTTTCATCCTCTTACCTCACGTAACGGCAATCACACCTCTTGGACTTCAATCTTTCTTCCTTGAAACAATGTATATGTAGCTCTCTAGGCCTTATTGGCTCCATTGGCCCTTCAGATTGTTGGAAATTTTGTTGTGGAAAACTGCTCTGCTTGAATTAACAGTAATGGATGGTTCATGTGGCTCAT
GGGAGAGTAGTTCATATAACAGTCGGTTTAATGGACCAGTCAAGGATAAGATGGATAGCCAACTGCAGATATCAGATTTGTTTGAACTTCAAGGAGATTCATATTTAGAATGTGAATTTCCAGAGCTCCACATTAATGGAGCAGATTTAACGCCAGCTGGGGCTTCCTCGGGATTTATGCAGACAAGCATAAGTTCTGAA
TTAGTTGCAGCCAGAGATGTAACTTCTTCCAAAACAAAACACAGAACAGGAATTGAAGCATCAGAAATAAATCATATAGACCCAAATAGTGATCGTGCACCTGGTTCTTTTCTTGCTATGAATCGGTCGTCGTGGCAAGCCAGTGGTGTCCGAAAGGCTAAGAAACGTAAGGCCTTTTCCTCTAAAACATCGATGGTAGA
TAATAATTTATCCCCTTGTAGAGATGCCCTTTACCGAACACAGACTCAAAGAAGTAATCACATAATGGCAGAAAGACACAGAAGGGAGGATATGAATGAAAAGTTTTCAATTCTGAGAACTATTCTGCCAAAAATAACAAAGAAAGACAAAGCCTCAATCGTGACAGACACAATAAATTATGTTAGTGAACTTGAAAAGA
AGATTAGACAGCTTGAAGATTTCAAATCCCGAACTTCAAGAAAGGGATCCAGGAAGAACTACTCGAATGGCAGCCATGAAAAGTTGGAGATAAAACTGAATCATAATCCGGACATTGAAATACAGAGCATGGGAAACCGAGCTGTAATTCAAGTTATGTGCCCGCGTCGTAGCCGTGGCCTGCTCCTACGTACTTTCGAA
GCTTTGGATGATTGTAAAGCAGATGTGTTGCAATCCAATATGATCACTTTGGGGAACATCACCCTCCAATATTTCACTGTTCAAGTCATCTTTCATGAATTTGATACTTGTTTGGACATTGCATGGCTTCATCTCAATGTTAATTCCTGGAGTGACAGCAAG

>TRINITY_DN42827_c0_g1_i2 from sample A7 / Example unspliced isoform:

TATCAACTTGCAATTTTTCATCCTCTTACCTCACGTAACGGCAATCACACCTCTTGGACTTCAATCTTTCTTCCTTGAAACAATGTATATGTAGCTCTCTAGGCCTTATTGGCTCCATTGGCCCTTCAGATTGTTGGAAATTTTGTTGTGGAAAACTGCTCTGCTTGAATTAACAGTAATGGATGGTTCATGTGGCTCAT
GGGAGAGTAGTTCATATAACAGTCGGTTTAATGGACCAGTCAAGGATAAGATGGATAGCCAACTGCAGATATCAGATTTGTTTGAACTTCAAGGAGATTCATATTTAGAATGTGAATTTCCAGAGCTCCACATTAATGGAGCAGATTTAACGCCAGCTGGGGCTTCCTCGGGATTTATGCAGACAAGCATAAGTTCTGAA
TTAGTTGCAGCCAGAGATGTAACTTCTTCCAAAACAAAACACAGAACAGGAATTGAAGCATCAGAAATAAATCATATAGACCCAAATAGTGATCGTGCACCTGGTTCTTTTCTTGCTATGAATCGGTCGTCGTGGCAAGCCAGTGGTGTCCGAAAGGCTAAGAAACGTAAGGCCTTTTCCTCTAAAACATCGATGGTAGA
TAATAATTTATCCCCTTGTAGAGATGCCCTTTACCGAACACAGACTCAAAGAAGTAATCACATAATGGCAGAAAGACACAGAAGGGAGGATATGAATGAAAAGTTTTCAATTCTGAGAACTATTCTGCCAAAAATAACAAAGAAAGACAAAGCCTCAATCGTGACAGACACAATAAATTATGTTAGTGAACTTGAAAAGA
AGATTAGACAGCTTGAAGATTTCAAATCCCGAACTTCAAGAAAGGGATCCAGGAAGAACTACTCGAATGGCAGCCATGAAAAGTTGGAGATAAAACTGAATCATAATCCGGACATTGAAATACAGAGCATGGGAAACCGAGCTGTAATTCAAGTTATGTGCCCGCGTCGTAGCCGTGGCCTGCTCCTACGTACTTTCGAA
GCTTTGGATGATTGTAAAGCAGATGTGTTGCAATCCAATATGATCACTTTGGGGAACATCACCCTCCAATATTTCACTGTTCAAgtatgtctctggagctcaaaacccactatgatacaatataaatattatgatagaatataaatatttaagcagatattttcttgctagaggtcatctttcatgaatttgatacttgt
tatttcttgctagagGTCATCTTTCATGAATTTGATACTTGTTTGGACATTGCATGGCTTCATCTCAATGGCAAGTATTGGTATCTAGTTATCTTCTTGCTGTTGCAGTTGCTTATATATATATGGTTTCTCTAGATTGGAGGAAAACAGCAGTTATTTATATATATATATGGTTTCTCTAGATTGGAGGAAGATGAGAC
AATGTCTAAGTTAATTTTGTGGAAGTTTTTGTAATTCTGATTCATGGATGGACAGTTTTAACTAAAAGAAGACCAGTGATAACAGGTAGCTGAGACATAAATGATTTTAACTATACACCAAGAACAAGAAACAGGTAATTAGTTCAGGGCATTTAACTT