sp|Q9C6Y3|CCA11_ARATH ----> Cyclin-A1-1
Intron 1 GTACTGCAAA ... TCATGTACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 47.2 | 353 | 280 | 351 |
| A2 | 52.66 | 285 | 319 | 315 |
| A3 | 50.67 | 350 | 385 | 334 |
| A4 | 50.74 | 217 | 229 | 218 |
| A5 | 49.29 | 142 | 137 | 139 |
| A6 | 49.17 | 522 | 511 | 499 |
| A7 | 50.29 | 870 | 853 | 907 |
| A8 | 51.02 | 518 | 538 | 541 |
| A9 | 53.5 | 809 | 937.5 | 924 |
| A10 | 53.38 | 770 | 887 | 876 |
>TRINITY_DN43679_c0_g4_i3 from sample A7 / Example spliced isoformCTCGGTTCCTGCGGGTCTTCAACGGTAGGATCCGGAAACCCACGGCTCGGATGATCTTGTCGTTACTAAATATAGTATTCATCTGAAGATCAAAAGCCAGGTCGAGTTCAAATTTCCCCATTTTCCCTAATTCCACACCGATCATCGCCTTACATCCATTTTGTTAAACAGTCCGAAACGCATAAATTTTGCCTATATAT
CGTTTTAATTGCTTAATTTTCGGTTTCGCCTTTGCATTTGCTGCTGGGAGTTGATTGTTTCAGGCAGGCCCGAGAACCTTGAAGAATTTTATTTTTTGACAGAAAAATGGCAGAGCCAAGTCGGAGATTAAAATTACGTGAAACGGCGTCAGTTGCACCAGCCGGGGGATCGAGGACAAGGGCAGAGATTCCACAGAAGG
ACAATATGAATCCGAAGAGAGTCTCTCAAGACGGCGGACCGCGGAGCCGCACTGTTCCACCTGTTCAGCAATCTAGAAGACGCGTTCCTCTTTCCAATTTGACAAATCACGCCTCCGCCCAATCTAAGCATGGCGTTCCCCATAGCCAGGGATCTATTAGCCAATCAGCACCTTCAAAGGCCAGGGCTAGAGGGACTCCC
AGCGGCACAAGAGACTCCGAAATTCAAAAGGGAGGAAAGATTTTAAACACAACTGCTTCTCATTCTTCAATTATTACAGAGGCTCTGTCCATCGACGGCAATGCCTCAGATATTGCTTCGCTGGAGCAGAAAGCCTTGCAGAACTTGTACATATCAAAGCATCATTCAAAGTCAAAACCATTGGAAGTTCACCTATTTGA
AGAAAGGACTCCAGTGGCAGCAGGGGTGCAAGAATCTAAGATTGTTGACATCGATGCAGATAACAGAAATCCTCAGATGTGCACATTCTATGCCTCTGATATCTATAACTATCTTCACAACACTGAGAAGAAGAGAAGGCCAACAACAGACTACATGGAGGTAGTTCAGCCAGACATAACTACTACCATGCGAGGAATAT
TGATAGACTGGCTTGTTGAGGTTTCAGAGGAATACAAACTTGTTTCGGAGACCCTATATTTGACTGTGTCCTATATAGACAGATATCTTTCTTGTAATGTTATAAACAGGCAAAGATTACAATTGGTCGGCATTTCCTGCATGTTGATTGCATCGAAACATGAGGAAATATCCCCAC
>TRINITY_DN43679_c0_g4_i1 from sample A7 / Example unspliced isoform:CTCGGTTCCTGCGGGTCTTCAACGGTAGGATCCGGAAACCCACGGCTCGGATGATCTTGTCGTTACTAAATATAGTATTCATCTGAAGATCAAAAGCCAGGTCGAGTTCAAATTTCCCCATTTTCCCTAATTCCACACCGATCATCGCCTTACATCCATTTTGTTAAACAGTCCGAAACGCATAAATTTTGCCTATATAT
CGTTTTAATTGCTTAATTTTCGGTTTCGCCTTTGCATTTGCTGCTGGGAGTTGATTGTTTCAGGCAGGCCCGAGAACCTTGAAGAATTTTATTTTTTGACAGAAAAATGGCAGAGCCAAGTCGGAGATTAAAATTACGTGAAACGGCGTCAGTTGCACCAGCCGGGGGATCGAGGACAAGGGCAGAGATTCCACAGAAGG
ACAATATGAATCCGAAGAGAGTCTCTCAAGACGGCGGACCGCGGAGCCGCACTGTTCCACCTGTTCAGCAATCTAGAAGACGCGTTCCTCTTTCCAATTTGACAAATCACGCCTCCGCCCAATCTAAGCATGGCGTTCCCCATAGCCAGGGATCTATTAGCCAATCAGCACCTTCAAAGGCCAGGGCTAGAGGGACTCCC
AGCGGCACAAGAGACTCCGAAATTCAAAAGGgtactgcaaaatcctctattcccagccaacctgcaaaacccgataatgttggtctaagggttctgagaaacaatgtggcgtgcagtacttctaatccggacgacatgatttcatgtacagGAGGAAAGATTTTAAACACAACTGCTTCTCATTCTTCAATTATTACAGA
GGCTCTGTCCATCGACGGCAATGCCTCAGATATTGCTTCGCTGGAGCAGAAAGCCTTGCAGAACTTGTACATATCAAAGCATCATTCAAAGTCAAAACCATTGGAAGTTCACCTATTTGAAGAAAGGACTCCAGTGGCAGCAGGGGTGCAAGAATCTAAGATTGTTGACATCGATGCAGATAACAGAAATCCTCAGATGT
GCACATTCTATGCCTCTGATATCTATAACTATCTTCACAACACTGAGAAGAAGAGAAGGCCAACAACAGACTACATGGAGGTAGTTCAGCCAGACATAACTACTACCATGCGAGGAATATTGATAGACTGGCTTGTTGAGGTTTCAGAGGAATACAAACTTGTTTCGGAGACCCTATATTTGACTGTGTCCTATATAGAC
AGATATCTTTCTTGTAATGTTATAAACAGGCAAAGATTACAATTGGTCGGCATTTCCTGCATGTTGATTGCATCGAAACATGAGGAAATATCCCCAC
Intron 2 GTCGAGTTCA ... TTTTTGACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 80.45 | 147 | 94 | 605 |
| A2 | 80.24 | 131 | 100 | 532 |
| A3 | 79.16 | 174 | 135 | 661 |
| A4 | 81.42 | 110 | 98 | 482 |
| A5 | 79.84 | 98 | 87 | 388 |
| A6 | 78.22 | 186 | 171 | 668 |
| A7 | 78.58 | 424 | 340 | 1555 |
| A8 | 79.8 | 164 | 143 | 648 |
| A9 | 77.7 | 380 | 322 | 1324 |
| A10 | 78.04 | 423 | 263 | 1503 |
>TRINITY_DN43679_c0_g4_i4 from sample A7 / Example spliced isoformCTCGGTTCCTGCGGGTCTTCAACGGTAGGATCCGGAAACCCACGGCTCGGATGATCTTGTCGTTACTAAATATAGTATTCATCTGAAGATCAAAAGCCAGAAAAATGGCAGAGCCAAGTCGGAGATTAAAATTACGTGAAACGGCGTCAGTTGCACCAGCCGGGGGATCGAGGACAAGGGCAGAGATTCCACAGAAGGAC
AATATGAATCCGAAGAGAGTCTCTCAAGACGGCGGACCGCGGAGCCGCACTGTTCCACCTGTTCAGCAATCTAGAAGACGCGTTCCTCTTTCCAATTTGACAAATCACGCCTCCGCCCAATCTAAGCATGGCGTTCCCCATAGCCAGGGATCTATTAGCCAATCAGCACCTTCAAAGGCCAGGGCTAGAGGGACTCCCAG
CGGCACAAGAGACTCCGAAATTCAAAAGGGTACTGCAAAATCCTCTATTCCCAGCCAACCTGCAAAACCCGATAATGTTGGTCTAAGGGTTCTGAGAAACAATGTGGCGTGCAGTACTTCTAATCCGGACGACATGATTTCATGTACAGGAGGAAAGATTTTAAACACAACTGCTTCTCATTCTTCAATTATTACAGAGG
CTCTGTCCATCGACGGCAATGCCTCAGATATTGCTTCGCTGGAGCAGAAAGCCTTGCAGAACTTGTACATATCAAAGCATCATTCAAAGTCAAAACCATTGGAAGTTCACCTATTTGAAGAAAGGACTCCAGTGGCAGCAGGGGTGCAAGAATCTAAGATTGTTGACATCGATGCAGATAACAGAAATCCTCAGATGTGC
ACATTCTATGCCTCTGATATCTATAACTATCTTCACAACACTGAGAAGAAGAGAAGGCCAACAACAGACTACATGGAGGTAGTTCAGCCAGACATAACTACTACCATGCGAGGAATATTGATAGACTGGCTTGTTGAGGTTTCAGAGGAATACAAACTTGTTTCGGAGACCCTATATTTGACTGTGTCCTATATAGACAG
ATATCTTTCTTGTAATGTTATAAACAGGCAAAGATTACAATTGGTCGGCATTTCCTGCATGTTGATTGCATCGAAACATGAGGAAATATCCCCAC
>TRINITY_DN43679_c0_g4_i1 from sample A7 / Example unspliced isoform:CTCGGTTCCTGCGGGTCTTCAACGGTAGGATCCGGAAACCCACGGCTCGGATGATCTTGTCGTTACTAAATATAGTATTCATCTGAAGATCAAAAGCCAGgtcgagttcaaatttccccattttccctaattccacaccgatcatcgccttacatccattttgttaaacagtccgaaacgcataaattttgcctatatat
cgttttaattgcttaattttcggtttcgcctttgcatttgctgctgggagttgattgtttcaggcaggcccgagaaccttgaagaattttattttttgacagAAAAATGGCAGAGCCAAGTCGGAGATTAAAATTACGTGAAACGGCGTCAGTTGCACCAGCCGGGGGATCGAGGACAAGGGCAGAGATTCCACAGAAGG
ACAATATGAATCCGAAGAGAGTCTCTCAAGACGGCGGACCGCGGAGCCGCACTGTTCCACCTGTTCAGCAATCTAGAAGACGCGTTCCTCTTTCCAATTTGACAAATCACGCCTCCGCCCAATCTAAGCATGGCGTTCCCCATAGCCAGGGATCTATTAGCCAATCAGCACCTTCAAAGGCCAGGGCTAGAGGGACTCCC
AGCGGCACAAGAGACTCCGAAATTCAAAAGGGTACTGCAAAATCCTCTATTCCCAGCCAACCTGCAAAACCCGATAATGTTGGTCTAAGGGTTCTGAGAAACAATGTGGCGTGCAGTACTTCTAATCCGGACGACATGATTTCATGTACAGGAGGAAAGATTTTAAACACAACTGCTTCTCATTCTTCAATTATTACAGA
GGCTCTGTCCATCGACGGCAATGCCTCAGATATTGCTTCGCTGGAGCAGAAAGCCTTGCAGAACTTGTACATATCAAAGCATCATTCAAAGTCAAAACCATTGGAAGTTCACCTATTTGAAGAAAGGACTCCAGTGGCAGCAGGGGTGCAAGAATCTAAGATTGTTGACATCGATGCAGATAACAGAAATCCTCAGATGT
GCACATTCTATGCCTCTGATATCTATAACTATCTTCACAACACTGAGAAGAAGAGAAGGCCAACAACAGACTACATGGAGGTAGTTCAGCCAGACATAACTACTACCATGCGAGGAATATTGATAGACTGGCTTGTTGAGGTTTCAGAGGAATACAAACTTGTTTCGGAGACCCTATATTTGACTGTGTCCTATATAGAC
AGATATCTTTCTTGTAATGTTATAAACAGGCAAAGATTACAATTGGTCGGCATTTCCTGCATGTTGATTGCATCGAAACATGAGGAAATATCCCCAC