sp|Q9C5J3|RRC1_ARATH ----> Protein RRC1
Intron 1 GTTTGTAAGT ... GTAGTGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 16.98 | 44 | 9 | 6 |
| A2 | 35.87 | 59 | 33 | 4 |
| A3 | 24.07 | 41 | 13 | 4 |
| A4 | 25 | 18 | 6 | 4 |
| A5 | 7.14 | 13 | 1 | 0 |
| A6 | 10 | 9 | 1 | 0 |
| A7 | 19.44 | 29 | 7 | 0 |
| A8 | 22.86 | 27 | 8 | 0 |
| A9 | 36.67 | 19 | 11 | 0 |
| A10 | 8.89 | 41 | 4 | 0 |
>TRINITY_DN118243_c1_g2_i28 from sample A3 / Example spliced isoformAAAGAAATGAAATAGTTACATCATGTATTTAGTACCGGCCCGAAAACTGACCAAGTAATGGGTTTAATTATTGATTGGTTTTGTGTTGAGGTGGATCCAAAAGTGACGTGCGTGCGAGGGTATCATCACTCCCCCTCAACACTTGCACTTGAAAATCTTTCGAGGCTCTCGGCAGCTTCCATTCGCATGCCAAACCCTGG
TACTGTCTGATGAGAAGATGAATTCATTTTCAGTGATTCGAAAGAAGACCCCTTTTCAAAAACACAGAGAAGAGGAAGAGGCTAAGAAGAAGAGAGCGGATGATGAGGCAGCTCGTTTGTATGAAGAGTTCGTGAAATCTTTCAAAACAGATGATGTGCCTGGTGGGAAAGCATTTGTTAGAGGGGAAACCATTGATCCC
AATGAGCGCTTGAAAACTGGAAATGAAGGTGGATCATCCAAAGATGGGGCCTCTGTATCAAAAAAGGGAAGCAGATATGTACCATCATTTATACCTCCTGGGATGGCAGCTACAGTCAATAAAGAAAAGGATGAAGCGAAAAAGAAAGAGGAAGAGAAACCAAAGGAGCGAGAAAAGCAGAAAACCCGTAATATAGATCA
TTTCATGGAAGAATTAAAGCTAGAGCAAGAGATGAGGGAAAAACGGAATCAAGATCGTGAACATCGGCGAGATGGAAGGCAAAATGAAAGCTTGATGCCGGTAAGTCGGTTTGATGAGCTACCAGATGAGTTTGATCCAAGTGGAAGGCTGATTGGATCGTTTGACGATGGGGATCCTCAGACAACTAATCTTTATGTAG
GAAATCTGTCACCTCAGGTGGATGAGAATTTTCTCCTTCGAACATTCGGTCGGTTTGGCCCTATTGCCAGTGTTAAAATAATGTGGCCAAGAACAGATGAAGAGCGAAGGAGGCAACGGAACTGTGGTTTTGTTGCTTTTATGAACAGAGCAGATGGTGATGCAGCAAAGGATGAAATGCAAGGGGTCATTGTCTATGAG
TATGAACTAAAGATTGGCTGGGGTAAATCTGTTACACTTCCTTCTCAAGCTCTCCCAGCACCACCGCCAGGTCAAATGGCTGTCAGGCAGAAAGAGGGTATTATAATTACATGGTCAGGGCCAGGTGGTCCGCTACCTCATGCTGTAACTAGTCAGGCTTCTGAGTTGATTTTAACTCCAAATGTTCCTGACATTGAGGT
TATACCTCCAGAAGACGATCATCTACGTCACGTGATTGACACTATGGCAATGTATGTGCTTGATGATGGTTGTGCCTTCGAACAAGAAATAATGGAAAGGGGACGTGGCAATCCACTGTTCAATTTCTTATTTGACCTTGGATCAAAGGAGCATACGTACTATGTTTGGCGGCTCTATTCATTTGCTCAGGGAGATACAC
TTCAAAGATGGCGGACAGAGCCTTTCATCATGATAACTGGAAGTGGGCGATGGATACCACCGCCTTTATCACAACAGGCAAGCACGAGAAGTCCAGAAAAGGAGAAGGATTCTGGTACAACTTATGCCGCTGGAAGGAGCAGGAGGGTTGATCAGGAGTGCTCCTTAACTGACAATCAGAGAGATGAGTTTGAAGACATG
TTGCGAGCTTTGACCTTGGAAAGGAATCAGATTAAAGAAGCTATGGGTTTTGCCTTGGATAATGCTGATGCAGCAGGAGAGGTAGTTGAGGTACTTACTGAATCGTTGACATTGAAGGAGACCCCAATTCCAACCAAAGTTGCCAGGCTTATGCTAGTTTCTGACATTCTTCATAACAGTAGTGCTCCGGTGAGGAATGC
ATCTGCTTATCGTACAAAATTTGAAGCAAGTATACCTGATATTATGGAAAGCTTTAATGACCTATATCGAAATATCACTGGCCGGATTACTGCAGAAGCTTTGAAGGAACGAGTTTTGAAAGTTCTACAGGTTTGGTCGGACTGGTTTCTCTTTTCAGATGTTTATGTGAATGGACTGAGAGCAACTTTTCTTCGGTCTG
GAAATTCAGGTGTTGCTCCTTTTCATTCAATCTGTGGAGATGCTCCACCAGTAAAGGACATTGGCAGTTCAGAGGATACTAGCAATGGTAAGGCAGAAGGAACCAGAGAAATTCAAGATGCTGCATTGGCTATTGGGAAGGGAGCAGCAGCTAGAGAACTGTCAAGCCTTCCTCTTGCAGAACTTGAGAGGCGTTGTAGA
CATACAGGGCTATCCATTCGTGGGGGTAGAGATCTGATGGTTGCTCGGCTGCTTAGCTTAGAAGAGGCAGAGAAAC
>TRINITY_DN118243_c1_g2_i15 from sample A3 / Example unspliced isoform:AAAGAAATGAAATAGTTACATCATGTATTTAGTACCGGCCCGAAAACTGACCAAGTAATGGGTTTAATTATTGATTGGTTTTGTGTTGAGGTGGATCCAAAAGTGACGTGCGTGCGAGGGTATCATCACTCCCCCTCAACACTTGCACTTGAAAATCTTTCGAGGCTCTCGGCAGCTTCCATTCGCATGCCAAACCCTGG
TACTGTCTGATGAGAAGATGAATTCATTTTCAGTGATTCGAAAGAAGACCCCTTTTCAAAAACACAGAGAAGAGGAAGAGGCTAAGAAGAAGAGAGCGGATGATGAGGCAGCTCGTTTGTATGAAGAGTTCGTGAAATCTTTCAAAACAGATGATGTGCCTGGTGGGAAAGCATTTGTTAGAGGGGAAACCATTGATCCC
AATGAGCGCTTGAAAACTGGAAATGAAGgtttgtaagttcttggtatacatattttaattccctttgctgttgatgctctgaatattaaaaggaatttctaatcagttctgtagtggcagGTGGATCATCCAAAGATGGGGCCTCTGTATCAAAAAAGGGAAGCAGGTGATTATACAAACCCCATATATTCAGGCCATTT
GATTGATGTGCTCATTCCTATTATTTGCCACTGTCAGATCTTGTACTAAAGTGCTCATTGTGATGAAGTGCTAATCATTGGTTTCCGTTAGAAGTATTTTTTAGGTTTTAAGAAGAGGTTTATTCTTGCAGTGATAGATAGCTATCTTATTGAAAAGATGTCCATAATAGCAGTTGTCATGGTGTGTTATAGGACTTTAG
TGCTTAGGCAGTAAGTGCTACAAACAGTATATGGGATTCTCAAATGTGTTTGGAATAGTTGAAACTTGATATTGATGAGGAGCTTGAGATAAGAAAATCTTCATGCACTCATCAATCAAATTATTATGCATCAATCGGTGTCCTTACTTTTTTGTTTGTTTATACTACCATCTTAAATACAATTTCATTAATATTACTGA
CA
Intron 2 GTATTATTTG ... ATGTTTTTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 15.25 | 100 | 0 | 18 |
| A2 | 21.62 | 58 | 0 | 16 |
| A3 | 12.5 | 42 | 1 | 6 |
| A4 | 15.79 | 32 | 0 | 6 |
| A5 | 20.83 | 19 | 0 | 5 |
| A6 | 20 | 8 | 0 | 2 |
| A7 | 17.28 | 67 | 0 | 14 |
| A8 | 7.32 | 38 | 0 | 3 |
| A9 | 15.22 | 39 | 0 | 7 |
| A10 | 8.33 | 55 | 0 | 5 |
>TRINITY_DN118243_c1_g2_i28 from sample A3 / Example spliced isoformAAAGAAATGAAATAGTTACATCATGTATTTAGTACCGGCCCGAAAACTGACCAAGTAATGGGTTTAATTATTGATTGGTTTTGTGTTGAGGTGGATCCAAAAGTGACGTGCGTGCGAGGGTATCATCACTCCCCCTCAACACTTGCACTTGAAAATCTTTCGAGGCTCTCGGCAGCTTCCATTCGCATGCCAAACCCTGG
TACTGTCTGATGAGAAGATGAATTCATTTTCAGTGATTCGAAAGAAGACCCCTTTTCAAAAACACAGAGAAGAGGAAGAGGCTAAGAAGAAGAGAGCGGATGATGAGGCAGCTCGTTTGTATGAAGAGTTCGTGAAATCTTTCAAAACAGATGATGTGCCTGGTGGGAAAGCATTTGTTAGAGGGGAAACCATTGATCCC
AATGAGCGCTTGAAAACTGGAAATGAAGGTGGATCATCCAAAGATGGGGCCTCTGTATCAAAAAAGGGAAGCAGATATGTACCATCATTTATACCTCCTGGGATGGCAGCTACAGTCAATAAAGAAAAGGATGAAGCGAAAAAGAAAGAGGAAGAGAAACCAAAGGAGCGAGAAAAGCAGAAAACCCGTAATATAGATCA
TTTCATGGAAGAATTAAAGCTAGAGCAAGAGATGAGGGAAAAACGGAATCAAGATCGTGAACATCGGCGAGATGGAAGGCAAAATGAAAGCTTGATGCCGGTAAGTCGGTTTGATGAGCTACCAGATGAGTTTGATCCAAGTGGAAGGCTGATTGGATCGTTTGACGATGGGGATCCTCAGACAACTAATCTTTATGTAG
GAAATCTGTCACCTCAGGTGGATGAGAATTTTCTCCTTCGAACATTCGGTCGGTTTGGCCCTATTGCCAGTGTTAAAATAATGTGGCCAAGAACAGATGAAGAGCGAAGGAGGCAACGGAACTGTGGTTTTGTTGCTTTTATGAACAGAGCAGATGGTGATGCAGCAAAGGATGAAATGCAAGGGGTCATTGTCTATGAG
TATGAACTAAAGATTGGCTGGGGTAAATCTGTTACACTTCCTTCTCAAGCTCTCCCAGCACCACCGCCAGGTCAAATGGCTGTCAGGCAGAAAGAGGGTATTATAATTACATGGTCAGGGCCAGGTGGTCCGCTACCTCATGCTGTAACTAGTCAGGCTTCTGAGTTGATTTTAACTCCAAATGTTCCTGACATTGAGGT
TATACCTCCAGAAGACGATCATCTACGTCACGTGATTGACACTATGGCAATGTATGTGCTTGATGATGGTTGTGCCTTCGAACAAGAAATAATGGAAAGGGGACGTGGCAATCCACTGTTCAATTTCTTATTTGACCTTGGATCAAAGGAGCATACGTACTATGTTTGGCGGCTCTATTCATTTGCTCAGGGAGATACAC
TTCAAAGATGGCGGACAGAGCCTTTCATCATGATAACTGGAAGTGGGCGATGGATACCACCGCCTTTATCACAACAGGCAAGCACGAGAAGTCCAGAAAAGGAGAAGGATTCTGGTACAACTTATGCCGCTGGAAGGAGCAGGAGGGTTGATCAGGAGTGCTCCTTAACTGACAATCAGAGAGATGAGTTTGAAGACATG
TTGCGAGCTTTGACCTTGGAAAGGAATCAGATTAAAGAAGCTATGGGTTTTGCCTTGGATAATGCTGATGCAGCAGGAGAGGTAGTTGAGGTACTTACTGAATCGTTGACATTGAAGGAGACCCCAATTCCAACCAAAGTTGCCAGGCTTATGCTAGTTTCTGACATTCTTCATAACAGTAGTGCTCCGGTGAGGAATGC
ATCTGCTTATCGTACAAAATTTGAAGCAAGTATACCTGATATTATGGAAAGCTTTAATGACCTATATCGAAATATCACTGGCCGGATTACTGCAGAAGCTTTGAAGGAACGAGTTTTGAAAGTTCTACAGGTTTGGTCGGACTGGTTTCTCTTTTCAGATGTTTATGTGAATGGACTGAGAGCAACTTTTCTTCGGTCTG
GAAATTCAGGTGTTGCTCCTTTTCATTCAATCTGTGGAGATGCTCCACCAGTAAAGGACATTGGCAGTTCAGAGGATACTAGCAATGGTAAGGCAGAAGGAACCAGAGAAATTCAAGATGCTGCATTGGCTATTGGGAAGGGAGCAGCAGCTAGAGAACTGTCAAGCCTTCCTCTTGCAGAACTTGAGAGGCGTTGTAGA
CATACAGGGCTATCCATTCGTGGGGGTAGAGATCTGATGGTTGCTCGGCTGCTTAGCTTAGAAGAGGCAGAGAAAC
>TRINITY_DN118243_c1_g2_i7 from sample A3 / Example unspliced isoform:ATGCTGATGCAGCAGGAGAGgtattatttgttggtgcagatgaataatcttaggttttatgtagtggattagatggttgatttccttgctgatagactttgtctgctgttttatgtttttagGTAGTTGAGGTACTTACTGAATCGTTGACATTGAAGGAGACCCCAATTCCAACCAAAGTTGCCAGGCTTATGCTAGTT
TCTGACATTCTTCATAACAGTAGTGCTCCGGTGAGGAATGCATCTGCTTATCGTACAAAATTTGAAGCAAGTATACCTGATATTATGGAAAGCTTTAATGAC
Intron 3 GCATGTCATC ... AAGGAAGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 51.21 | 47.4 | 54.4 | 45 |
| A2 | 62.92 | 33 | 53 | 59 |
| A3 | 51.55 | 47 | 55 | 45 |
| A4 | 58.56 | 42 | 69 | 49.7 |
| A5 | 66.43 | 15.6 | 32.7 | 29 |
| A6 | 61.17 | 20 | 26 | 37 |
| A7 | 58.18 | 23 | 34 | 30 |
| A8 | 57.58 | 14 | 19 | 19 |
| A9 | 72.84 | 11 | 31 | 28 |
| A10 | 69.49 | 18 | 43 | 39 |
>TRINITY_DN136375_c7_g2_i1 from sample A1 / Example spliced isoformCTTCTATTCGCATGCCAAACCCTGGTACTGTCTGATGAGAAGATGAATTCATTTTCAGTGATTCGAAAGAAGACCCCTTTTCAAAAACATAGAGAAGAAGAGGAAGCTAAGAAAAAGAGAGCAGATGAAGAAGCAGCTCGTTTGTATGAAGAATTTGTCGAATCATTTAAGGGAGATGATGTTCCTGGTGGAAAAGCATT
TGTGCGGGGAGAGACTATCAATCCCGATGATCCAGGAAAAACTGGAAATGAAGATATGTGCCCTCATTTATACCTCCTGGATTGGCAGCTACATCTAATAAATCAAAGGATTCAGAGAAAAAGAAAGAAGAGGAAAGACCGAAGGAAAGGGAAAAGGGGAGATTGCGCAACATTGACAATTTCATGGAAGAACTAAAGGC
TGAGCAAGAGTTGAGAGACAAACGAAATCAGGAACGTGGACATCGACAAAGGGAGGGGAGGCAGATAGAAAATGCAGCACCTTCAAGTCGATTCGATGAGCTTCCAGATGAACTTGAATTGTTTGGAAAATTGTCAGGATCAGTCGATGATGGGGATCCTCAGACAACTAATCTTTATGTTGGAAATTTATCACCTCAGG
TGGATGAAAATTTCCTTCTACGGACATTTGGACGATTTGGTCCGATTGCCAGTGTCAAGATCATGTGGCCAAGAACTGAGGAGGAGCGTAGAAGGCAACGCAATTGTGGTTTTGTTGCTTTTATGAATAGGGAAGAAGCTCAAGCAGCAAATGATGAAATGCAAGGTGTTGTTGTGTATGACTATGAATTGAGAATTGGT
TGGGGTAAATCTGTGTCACTTCCTTCTCAAGCTCTTCCTGCACCACCACCAGGTCAAATGGCTGTCAGAACTAAAGAGGGTGGTAAAGTGGCTTGGTCAGGTCCAGGTGCTCCAACTTGTGTTGTGACAAGTCAGGCTGCTGAGGTGGTTGTCACCCCAAATGTTCCAGACATAGAGGTCATTCCTCCTGAAGATGAGCA
TCTGCGTCATGTGATTGATACCATGGCAATGTATGTGCTTGATGATGGGTGTCCCTTTGAACAAGCTATAATGGAAAGAGGACGGGGCAATCCATTGTTTGGATTTTTATTTGATCTTGGATCTAAGGAACATACTTACTATGTTTGGCGGCTCTATTCATTTGCTCAGGGGGATACTCTTCAAAGGTGGAGAACAGAGC
CTTTCATCATGATTACAGGAAGTGGGCGGTGGATACCACCACGCTTACCACAACAAACAAGTACAAAGAGTCCAGAGCATGAGAAAGCCTCAACTGCAACTTATGCTGCTGGAAGGACCAGGCAGAGAGTGGATCAAGAACGTGCCTTAACAGAGAGCCAAAGAGATGAATTTGAGGACATGCTTCGTGCTTTAACCTTG
GAGAGAAGTCAGATAAAAGAAGCAATGGGGTTTGCTCTAGACAATGCCGATGCAGCTGGCGAGGTAGTTGAGGTACTTACAGAATCTTTGACTCTGAAGGAGACCCCCATTCCAACCAAAGTAGCAAGGCTCATGTTAGTTTCTGATATTCTTCACAATAGTAGCGCTCCTGTGAAAAATGCTTCTGCATACAGGACGAA
GTTTGAAGCAGCATTGCCTGATATTATGGAAAGCTTTAATGACTTGTACCGAAACATCACTGGTCGGATTACTGCAGAAGCATTGAAGGAGAG
>TRINITY_DN136375_c7_g2_i11 from sample A1 / Example unspliced isoform:CTTCTATTCGCATGCCAAACCCTGGTACTGTCTGATGAGAAGATGAATTCATTTTCAGTGATTCGAAAGAAGACCCCTTTTCAAAAACATAGAGAAGAAGAGGAAGCTAAGAAAAAGAGAGCAGATGAAGAAGCAGCTCGTTTGTATGAAGAATTTGTCGAATCATTTAAGGGAGATGATGTTCCTGGTGGAAAAGCATT
TGTGCGGGGAGAGACTATCAATCCCGATGATCCAGGAAAAACTGGAAATGAAGgcatgtcatccaaagaaggggcttctggttcaaagaaaggaagcagATATGTGCCCTCATTTATACCTCCTGGATTGGCAGCTACATCTAATAAATCAAAGGATTCAGAGAAAAAGAAAGAAGAGGAAAGACCGAAGGAAAGGGAAA
AGGGGAGATTGCGCAACATTGACAATTTCATGGAAGAACTAAAGGCTGAGCAAGAGTTGAGAGACAAACGAAATCAGGAACGTGGACATCGACAAAGGGAGGGGAGGCAGATAGAAAATGCAGCACCTTCAAGTCGATTCGATGAGCTTCCAGATGAACTTGAATTGTTTGGAAAATTGTCAGGATCAGTCGATGATGGG
GATCCTCAGACAACTAATCTTTATGTTGGAAATTTATCACCTCAGGTGGATGAAAATTTCCTTCTACGGACATTTGGACGATTTGGTCCGATTGCCAGTGTCAAGATCATGTGGCCAAGAACTGAGGAGGAGCGTAGAAGGCAACGCAATTGTGGTTTTGTTGCTTTTATGAATAGGGAAGAAGCTCAAGCAGCAAATGA
TGAAATGCAAGGTGTTGTTGTGTATGACTATGAATTGAGAATTGGTTGGGGTAAATCTGTGTCACTTCCTTCTCAAGCTCTTCCTGCACCACCACCAGGTCAAATGGCTGTCAGAACTAAAGAGGGTGGTAAAGTGGCTTGGTCAGGTCCAGGTGCTCCAACTTGTGTTGTGACAAGTCAGGCTGCTGAGGTGGTTGTCA
CCCCAAATGTTCCAGACATAGAGGTCATTCCTCCTGAAGATGAGCATCTGCGTCATGTGATTGATACCATGGCAATGTATGTGCTTGATGATGGGTGTCCCTTTGAACAAGCTATAATGGAAAGAGGACGGGGCAATCCATTGTTTGGATTTTTATTTGATCTTGGATCTAAGGAACATACTTACTATGTTTGGCGGCTC
TATTCATTTGCTCAGGGGGATACTCTTCAAAGGTGGAGAACAGAGCCTTTCATCATGATTACAGGAAGTGGGCGGTGGATACCACCACGCTTACCACAACAAACAAGTACAAAGAGTCCAGAGCATGAGAAAGCCTCAACTGCAACTTATGCTGCTGGAAGGACCAGGCAGAGAGTGGATCAAGAACGTGCCTTAACAGA
GAGCCAAAGAGATGAATTTGAGGACATGCTTCGTGCTTTAACCTTGGAGAGAAGTCAGATAAAAGAAGCAATGGGGTTTGCTCTAGACAATGCCGATGCAGCTGGCGAGGTAGTTGAGGTACTTACAGAATCTTTGACTCTGAAGGAGACCCCCATTCCAACCAAAGTAGCAAGGCTCATGTTAGTTTCTGATATTCTTC
ACAATAGTAGCGCTCCTGTGAAAAATGCTTCTGCATACAGGACGAAGTTTGAAGCAGCATTGCCTGATATTATGGAAAGCTTTAATGACTTGTACCGAAACATCACTGGTCGGATTACTGCAGAAGCATTGAAGGAGAG
Intron 4 GTCTGGTTTA ... ATAATAACAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 42.25 | 54.1 | 39.6 | 23 |
| A2 | 27.4 | 53 | 20 | 10 |
| A3 | 40.86 | 55 | 38 | 7 |
| A4 | 33.01 | 69 | 34 | 14 |
| A5 | 33.69 | 32.7 | 16.6 | 6 |
| A6 | 13.33 | 26 | 4 | 1 |
| A7 | 26.09 | 34 | 12 | 0 |
| A8 | 26.92 | 19 | 7 | 0 |
| A9 | 16.22 | 31 | 6 | 0 |
| A10 | 17.31 | 43 | 9 | 0 |
>TRINITY_DN120299_c0_g2_i13 from sample A2 / Example spliced isoformCGAAAACTGACCAAGTAATGGGTATCCATTAGAAAGCCTTGGACTCCAAAATCCCAATCGCTTGTGGTAGCGAAAGAAATGGAATAGTTACATCATGTATTTATTACCGGCCCGAAAACTGACCAAGTAATGGGTTTAATTATTGATTGGTTTTGTGTTGAGGTGGATCCAAAAGTGACGTGCGTGCGAGGGTATCATCA
CTCCCCCTCAACACTTGCACTTGAAAATCTTTCGAGGCTCTCGGCAGCTTCTATTCGCATGCCAAACCCTGGTACTGTCTGATGAGAAGATGAATTCATTTTCAGTGATTCGAAAGAAGACCCCTTTTCAAAAACATAGAGAAGAAGAGGAAGCTAAGAAAAAGAGAGCAGATGAAGAAGCAGCTCGTTTGTATGAAGAA
TTTGTCGAATCATTTAAGGGAGATGATGTTCCTGGTGGAAAAGCATTTGTGCGGGGAGAGACTATCAATCCCGATGATCCAGGAAAAACTGGAAATGAAGGCATGTCATCCAAAGAAGGGGCTTCTGGTTCAAAGAAAGGAAGCAGATATGTGCCCTCATTTATACCTCCTGGATTGGCAGCTACATCTAATAAATCAAA
GGATTCAGAGAAAAAGAAAGAAGAGGAAAGACCGAAGGAAAGGGAAAAGGGGAGATTGCGCAACATTGACAATTTCATGGAAGAACTAAAGGCTGAGCAAGAGTTGAGAGACAAACGAAATCAGGAACGTGGACATCGACAAAGGGAGGGGAGGCAGATAGAAAATGCAGCACCTTCAAGTCGATTCGATGAGCTTCCAG
ATGAACTTGAATTGTTTGGAAAATTGTCAGGATCAGTCGATGATGGGGATCCTCAGACAACTAATCTTTATGTTGGAAATTTATCACCTCAGGTGGATGAAAATTTCCTTCTACGGACATTTGGACGATTTGGTCCGATTGCCAGTGTCAAGATCATGTGGCCAAGAACTGAGGAGGAGCGTAGAAGGCAACGCAATTGT
GGTTTTGTTGCTTTTATGAATAGGGAAGAAGCTCAAGCAGCAAATGATGAAATGCAAGGTGTTGTTGTGTATGACTATGAATTGAGAATTGGTTGGGGTAAATCTGTGTCACTTCCTTCTCAAGCTCTTCCTGCACCACCACCAGGTCAAATGGCTGTCAGAACTAAAGAGGGTGGTAAAGTGGCTTGGTCAGGTCCAGG
TGCTCCAACTTGTGTTGTGACAAGTCAGGCTGCTGAGGTGGTTGTCACCCCAAATGTTCCAGACATAGAGGTCATTCCTCCTGAAGATGAGCATCTGCGTCATGTGATTGATACCATGGCAATGTATGTGCTTGATGATGGGTGTCCCTTTGAACAAGCTATAATGGAAAGAGGACGGGGCAATCCATTGTTTGGATTTT
TATTTGATCTTGGATCTAAGGAACATACTTACTATGTTTGGCGGCTCTATTCATTTGCTCAGGGGGATACTCTTCAAAGGTGGAGAACAGAGCCTTTCATCATGATTACAGGAAGTGGGCGGTGGATACCACCACGCTTACCACAACAAACAAGTACAAAGAGTCCAGAGCATGAGAAAGCCTCAACTGCAACTTATGCT
GCTGGAAGGACCAGGCAGAGAGTGGATCAAGAACGTGCCTTAACAGAGAGCCAAAGAGATGAATTTGAGGACATGCTTCGTGCTTTAACCTTGGAGAGAAGTCAGATAAAAGAAGCAATGGGGTTTGCTCTAGACAATGCCGATGCAGCTGGCGAGGTAGTTGAGGTACTTACAGAATCTTTGACTCTGAAGGAGACCCC
CATTCCAACCAAAGTAGCAAGGCTCATGTTAGTTTCTGATATTCTTCACAATAGTAGCGCTCCTGTGAAAAATGCTTCTGCATACAGGACGAAGTTTGAAGCAGCATTGCCTGATATTATGGAAAGCTTTAATGACTTGTACCGAAACATCACTGGTCGGATTACTGCAGAAGCATTGAAGGAGAGAGTGATGAAAGCTC
TCCAGGTTTGGGCCGACTGGTTTCTCTTTTCAGATGCTTATGTGAATGGACTGAGAGCAACCTTTCTTCGGTCTGGAAATTCAGGTGTCCCTCCTTTTCATTCAATATGTGGAGATGCCCCACCATTGAAGGACCTTGATAATTCTGAAGCCACTCTTATAGACATGTCAGAAGGAGCTGGTCCTAGTCAAGATGCTGCT
CTGGCAATTGGAGAGGGAGCAGCAGCTCGAGAATTGTTTAGTATTCCTCTTGTGGAGCTTGAAAGACGGTGTAGGCAGAATGGCTTATCTATTCGTGGTGGTAGGGAGGTAATGGTTTCTCGATTGCTTAGCTTAGAAGAAGCAGAGAAGCTTAAGAACCAAGATCAAGACGAGGATGTCAGATATGGGTATAACTTTGC
TATCGGAGGGAAGCATGCAAGAGAAACTGATGCTTATTCAAAATCGGGAGGGGGAAGGTGGAGCTCAGGTGAAGAAAGAAAATCCATATGTGATGATGACAAGGACTATATGTCCAGGTCTAGGCAAGGTGTTCAGGAAGAATCATCTTTATGGTCACGGGCTGAGGAGCCCGAAGCAATGGATGCCTCTAGCAGTGGAA
CTTTACCAGACAATACTTCTTCAGTGGGGCTCTTAAAGTCATCAATCCCACAGCCAGAACTAAAACATTTAACAAGCAATTCTATGAAAACACATCCTGCATTACAGTCTTCAAAGTGGACTCGTGAAGATGATGGAACCGATACAGAGGATAAGGCAGAGCTTAAGGGACTTGGTTTGAATTACTCTTCCTCTGGTAGC
GACGACATATTTGGGGGTTCTGTGAAAGATGACGAACAAGAAGTGACAGTGGACAGCATTGCTTCTGCTCTTAATGACACTGGAATGGATGAAGGTCGCAGGCAAAAGCTACGCCAATTGGAGGTAACACTAATGGAGTATCGTGAGTCTCTTGAAGAACGTGGCACTAAGAATGCTGAAGAAATTGAAAGAAAAGTCTC
TGCACACAGAAAGAGATTAGAAGCTGAATATGGGTTAATAGATCCTGTGACTAACAAAGACAATAAATCAGATTCTGGAAACTACAGGCATTCGTCTCGGATGGCAGAGAGATTCTCTCTGGAACAGAAGGAAAGGCGAGATGATAATAGAGATTCATCTTCAAAGAAGCGTAGTCGCAGTGGAAACCGTAGCAAGAGTC
CCTCACACAGATTAAGTAAAGACA
>TRINITY_DN120299_c0_g2_i11 from sample A2 / Example unspliced isoform:AAGACATCGACATTTTACAAATTAACACGCCATTCCAAAGGATATGCATGTGTGTAATATGATTTTTGGCAACTGTACTAATTGCTATATTCTGGGGATTCAGAGAGCAGATGAAGAAGCAGCTCGTTTGTATGAAGAATTTGTCGAATCATTTAAGGGAGATGATGTTCCTGGTGGAAAAGCATTTGTGCGGGGAGAGA
CTATCAATCCCGATGATCCAGGAAAAACTGGAAATGAAGgtctggtttatgttctatatgttttcttacctgattggtctgttgctgtcttgttaacaaagaggttttctatttatttcataataacagGCATGTCATCCAAAGAAGGGGCTTCTGGTTCAAAGAAAGGAAGCAGGTATTACTGGATTATTGCTAATGAT
TCCCATGCATCTCTTAGAAATTTTAGGTACTTAAATCTTATGTGATTTGGTTGAAATTAGAACATATTCTCCCACAGGGTTCAGGTTGCCTTTTGGCATTGTAGTTGGACTTTAGTTTTTAACTGATACGT
Intron 5 GTAATGCATG ... GTGCTACCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 21.47 | 64 | 19 | 16 |
| A2 | 21.59 | 69 | 19 | 19 |
| A3 | 22.63 | 53 | 15 | 16 |
| A4 | 24.14 | 33 | 9 | 12 |
| A5 | 24 | 19 | 11 | 1 |
| A6 | 17.74 | 51 | 11 | 11 |
| A7 | 21.45 | 249 | 77 | 59 |
| A8 | 21.54 | 326 | 70 | 109 |
| A9 | 22.03 | 207 | 44 | 73 |
| A10 | 19.35 | 173 | 36 | 47 |
>TRINITY_DN118243_c1_g2_i26 from sample A3 / Example spliced isoformAAAGAAATGAAATAGTTACATCATGTATTTAGTACCGGCCCGAAAACTGACCAAGTAATGGGTTTAATTATTGATTGGTTTTGTGTTGAGGTGGATCCAAAAGTGACGTGCGTGCGAGGGTATCATCACTCCCCCTCAACACTTGCACTTGAAAATCTTTCGAGGCTCTCGGCAGCTTCCATTCGCATGCCAAACCCTGG
TACTGTCTGATGAGAAGATGAATTCATTTTCAGTGATTCGAAAGAAGACCCCTTTTCAAAAACATAGAGAAGAAGAGGAAGCTAAGAAAAAGAGAGCAGATGAAGAAGCAGCTCGTTTGTATGAAGAATTTGTCGAATCATTTAAGGGAGATGATGTTCCTGGTGGAAAAGCATTTGTGCGGGGAGAGACTATCAATCCC
GATGATCCAGGAAAAACTGGAAATGAAGGCATGTCATCCAAAGAAGGGGCTTCTGGTTCAAAGAAAGGAAGCAGATATGTGCCCTCATTTATACCTCCTGGATTGGCAGCTACATCTAATAAATCAAAGGATTCAGAGAAAAAGAAAGAAGAGGAAAGACCGAAGGAAAGGGAAAAGGGGAGATTGCGCAACATTGACAA
TTTCATGGAAGAACTAAAGGCTGAGCAAGAGTTGAGAGACAAACGAAATCAGGAACGTGGACATCGACAAAGGGAGGGGAGGCAGATAGAAAATGCAGCACCTTCAAGTCGATTCGATGAGCTTCCAGATGAACTTGAATTGTTTGGAAAATTGTCAGGATCAGTCGATGATGGGGATCCTCAGACAACTAATCTTTATG
TTGGAAATTTATCACCTCAGGTGGATGAAAATTTCCTTCTACGGACATTTGGACGATTTGGTCCGATTGCCAGTGTCAAGATCATGTGGCCAAGAACTGAGGAGGAGCGTAGAAGGCAACGCAATTGTGGTTTTGTTGCTTTTATGAATAGGGAAGAAGCTCAAGCAGCAAATGATGAAATGCAAGGTGTTGTTGTGTAT
GACTATGAATTGAGAATTGGTTGGGGTAAATCTGTGTCACTTCCTTCTCAAGCTCTTCCTGCACCACCACCAGGTCAAATGGCTGTCAGAACTAAAGAGGGTGGTAAAGTGGCTTGGTCAGGTCCAGGTGCTCCAACTTGTGTTGTGACAAGTCAGGCTGCTGAGGTGGTTGTCACCCCAAATGTTCCAGACATAGAGGT
CATTCCTCCTGAAGATGAGCATCTGCGTCATGTGATTGATACCATGGCAATGTATGTGCTTGATGATGGGTGTCCCTTTGAACAAGCTATAATGGAAAGAGGACGGGGCAATCCATTGTTTGGATTTTTATTTGATCTTGGATCTAAGGAACATACTTACTATGTTTGGCGGCTCTATTCATTTGCTCAGGGGGATACTC
TTCAAAGGTGGAGAACAGAGCCTTTCATCATGATTACAGGAAGTGGGCGGTGGATACCACCACGCTTACCACAACAAACAAGTACAAAGAGTCCAGAGCATGAGAAAGCCTCAACTGCAACTTATGCTGCTGGAAGGACCAGGCAGAGAGTGGATCAAGAACGTGCCTTAACAGAGAGCCAAAGAGATGAATTTGAGGAC
ATGCTTCGTGCTTTAACCTTGGAGAGAAGTCAGATAAAAGAAGCAATGGGGTTTGCTCTAGACAATGCCGATGCAGCTGGCGAGGTAGTTGAGGTACTTACAGAATCTTTGACTCTGAAGGAGACCCCCATTCCAACCAAAGTAGCAAGGCTCATGTTAGTTTCTGATATTCTTCACAATAGTAGCGCTCCTGTGAAAAA
TGCTTCTGCATACAGGACGAAGTTTGAAGCAGCATTGCCTGATATTATGGAAAGCTTTAATGACTTGTACCGAAACATCACTGGTCGGATTACTGCAGAAGCATTGAAGGAGAGAGTGATGAAAGCTCTCCAGGTTTGGGCCGACTGGTTTCTCTTTTCAGATGCTTATGTGAATGGACTGAGAGCAACTTTTCTTCGGT
CTGGAAATTCAGGTGTCCCTCCTTTTCATTCAATATGTGGAGATGCCCCACCATTGAAGGACCTTGATAATTCTGAAGCCACTCTTATAGACATGTCAGAAGGAGCTGGTCCTAGTCAAGATGCTGCTCTGGCAATTGGAGAGGGAGCAGCAGCTCGAGAATTGTTTAGTATTCCTCTTGTGGAGCTTGAAAGACGGTGT
AGGCAGAATGGCTTATCTATTCGTGGTGGTAGGGAGGTAATGGTTTCTCGATTGCTTAGCTTAGAAGAAGCAGAGAAGCTTAAGAACCAAGATCAAGACGAGGATGTCAGATATGGGTATAACTTTGCTATCGGAGGGAAGCATGCAAGAGAAACTGATGCTTATTCAAAATCGGGAGGGGGAAGGTGGAGCTCAGGTGA
AGAAAGAAAATCCATATGTGATGATGACAAGGACTATATGTCCAGGTCTAGGCAAGGTGTTCAGGAAGAATCATCTTTATGGTCACGGGCTGAGGAGCCCGAAGCAATGGATGCCTCTAGCAGTGGAACTTTACCAGACAATACTTCTTCAGTGGGGCTCTTAAAGTCATCAATCCCACAGCCAGAACTAAAACATTTAA
CAAGCAATTCTATGAAAACACATCCTGCATTACAGTCTTCAAAGTGGACTCGTGAAGATGATGGAACCGATACAGAGGATAAGGCAGAGCTTAAGGGACTTGGTTTGAATTACTCTTCCTCTGGTAGCGACGACATATTTGGGGGTTCTGTGAAAGATGACGAACAAGAAGTGACAGTGGACAGCATTGCTTCTGCTCTT
AATGACACTGGAATGGATGAAGGTCGCAGGCAAAAGCTACGCCAATTGGAGGTAACACTAATGGAGTATCGTGAGTCTCTTGAAGAACGTGGCACTAAGAATGCTGAAGAAATTGAAAGAAAAGTCTCTGCACACAGAAAGAGATTAGAAGCTGAATATGGGTTAATAGATCCTGTGACTAACAAAGACAATAAATCAGA
TTCTGGAAACTACAGGCATTCGTCTCGGATGGCAGAGAGATTCTCTCTGGAACAGAAGGAAAGGCGAGATGATAATAGAGATTCATCTTCAAAGAAGCGTAGTCGCAGTGGAAACCGTAGCAAGAGTCCCTCACACAGATTAAGTAAAGACAGGGAAAAAGAGGACAGGGAGAAGGGTTTTGATGGGGATGGGGACCGAG
ATCCTGATACTGATTCTGTTCGTCGTGAAAGAGATAGACTTCGTGATTCTGATGCTGGAAGGGGGAGAGGGAGGAGTGGCAGTAGAGAACATGACAATCATGACAGGGATAGGGACAGAGACAGGGAGAAGGGCAAGGGAAGAGAGAGGGATAGGGATCGTGATAGAGAAAGGGAAAAGGAAAGGGATAGAGATAGGGAA
AAGGAAAAGGATAGAGATAGGGAAAAGAGGAGCAGAAGAAGCTAGGCATTTACTTTATCATCTTCTTGTGCTAATATGTCCTGAATTTTTATTTGAGTTGTGATATCTATACAAAGTAGGTAGTTTTCTTTCAGAGTTAGGTTTAAAAAAATATTTCTTTGCCTTCGAGGTTTTGGATTCAAGTTAAATTTTATAGCCTG
CATGATTAATGCAGAATTCCATTATTGAAATTCAATTTGATGCAGAGTTGTCCCATAAGCACACTAAGGCGGTTTCAAAGTATATGAGGTGACTTCTAACAATGTTTCATTTCTCATGTAATAGAAATTGATTCTGATGTGCGTGCACTTAGAACCTGATCTGTGAAAGTGTTGTTTGTTATATTTTCTCTCGTTTTTGA
GGTACTGATGAGTTGTCTAGACGCCCAGAATATGCATACTTATGATGTAGGTGATTAGCTCCCCATGTTTCAAAGGCCTATGTTTTTCAGCTGGCTAACCTTCTAAAGGAGTATTCAAACCAGCAGAGAGTTTATGCAGTCGAGCATAACTATTACCATATTATATATATTTTCTCTGCTGAATTCGTCAAGGGTCATGG
AAGTGAATTATCTGAAATACGTTGCCCTTATCAAGTGACTCTATGACAGGTTTCTTGGAATCTACTCAGGGACCTTAATTGTAAATTTGTCCACGATTGCAGGTGGCGCTGTTCTTGAGTGTATTTGATTGCTTGCCTCTTTCTTCCATTCCTATGTTTTCTGAATTAAATTCTTTGAAGGTTGTATAGCCTGTAGGCAT
TATACTCTTTTCAAACAAACACTTTCGGATTTAACCCAATGCAGATACTGACATTATCTGCAAAGAGGAGATTAAGCGCAAAGATAGTGTTGAGCATATCAAAGTTGAGAATGCTTGTAAAGATTTAAGAGACGAGAGTCGAGACTAACTGTTTTAGAATCAAGCCATTAAAAGACAATACTACATTACAAGACAATCCT
ACATGCAAGGATAATTTGATTATAATAGTGAATTAGCCAGAAAATGTAAGTTTATTGGCATTGTTGTTCTACTTACTTCCAGAAATCCTTTTTCGC
>TRINITY_DN118243_c1_g2_i21 from sample A3 / Example unspliced isoform:TGTGAACCCTAGATCTAGCAAACTAATTCTAGCCATTAGATTGGTAGTTAGGAAGTTAGTTGCTAGAATTAAAGTATAAAATAATGTGAAGGGACAAAGGAAGAAACACACCAGCAGGAGAAAAGAGAGAGTGAAGGGCAGATTTTTCTTCAAGGAGAGAAAGGGCTCGATTCCCAAGATGAGAAGAGGCTTGATTTCCA
AGGCTGCTAGGGCAGATTACCCAGCACGATTTTCAAGAAAGTGACTGCATTAAGTGCCCAGGTCATACAGCATTAAATGCTGTCACAGTGGTGCGATTTCCAAGTTGCTGGTACAGTGTGGCATGTGTAAAGGGGGCCGTACAGCAGCACATAAATCGAGGTTATTGCTGTTAAAAGAAAGGTACTGTCTGATGAGAAGA
TGAATTCATTTTCAGTGATTCGAAAGAAGACCCCTTTTCAAAAACATAGAGAAGAAGAGGAAGCTAAGAAAAAGAGAGCAGATGAAGAAGCAGCTCGTTTGTATGAAGAATTTGTCGAATCATTTAAGGGAGATGATGTTCCTGGTGGAAAAGCATTTGTGCGGGGAGAGACTATCAATCCCGATGATCCAGGAAAAACT
GGAAATGAAGGCATGTCATCCAAAGAAGGGGCTTCTGGTTCAAAGAAAGGAAGCAGATATGTGCCCTCATTTATACCTCCTGGATTGGCAGCTACATCTAATAAATCAAAGGATTCAGAGAAAAAGAAAGAAGAGGAAAGACCGAAGGAAAGGGAAAAGGGGAGATTGCGCAACATTGACAATTTCATGGAAGAACTAAA
GGCTGAGCAAGAGTTGAGAGACAAACGAAATCAGGAACGTGGACATCGACAAAGGGAGGGGAGGCAGATAGAAAATGCAGCACCTTCAAGTCGATTCGATGAGCTTCCAGATGAACTTGAATTGTTTGGAAAATTGTCAGGATCAGTCGATGATGGGGATCCTCAGACAACTAATCTTTATGTTGGAAATTTATCACCTC
AGGTGGATGAAAATTTCCTTCTACGGACATTTGGACGATTTGGTCCGATTGCCAGTGTCAAGATCATGTGGCCAAGAACTGAGGAGGAGCGTAGAAGGCAACGCAATTGTGGTTTTGTTGCTTTTATGAATAGGGAAGAAGCTCAAGCAGCAAATGATGAAATGCAAGGTGTTGTTGTGTATGACTATGAATTGAGAATT
GGTTGGGGTAAATCTGTGTCACTTCCTTCTCAAGCTCTTCCTGCACCACCACCAGGTCAAATGGCTGTCAGAACTAAAGAGGGTGGTAAAGTGGCTTGGTCAGGTCCAGGTGCTCCAACTTGTGTTGTGACAAGTCAGGCTGCTGAGGTGGTTGTCACCCCAAATGTTCCAGACATAGAGGTCATTCCTCCTGAAGATGA
GCATCTGCGTCATGTGATTGATACCATGGCAATGTATGTGCTTGATGATGGGTGTCCCTTTGAACAAGCTATAATGGAAAGAGGACGGGGCAATCCATTGTTTGGATTTTTATTTGATCTTGGATCTAAGGAACATACTTACTATGTTTGGCGGCTCTATTCATTTGCTCAGGGGGATACTCTTCAAAGGTGGAGAACAG
AGCCTTTCATCATGATTACAGGAAGTGGGCGGTGGATACCACCACGCTTACCACAACAAACAAGTACAAAGAGTCCAGAGCATGAGAAAGCCTCAACTGCAACTTATGCTGCTGGAAGGACCAGGCAGAGAGTGGATCAAGAACGTGCCTTAACAGAGAGCCAAAGAGATGAATTTGAGGACATGCTTCGTGCTTTAACC
TTGGAGAGAAGTCAGATAAAAGAAGCAATGGGGTTTGCTCTAGACAATGCCGATGCAGCTGGCGAGGTAGTTGAGGTACTTACAGAATCTTTGACTCTGAAGGAGACCCCCATTCCAACCAAAGTAGCAAGGCTCATGTTAGTTTCTGATATTCTTCACAATAGTAGCGCTCCTGTGAAAAATGCTTCTGCATACAGGAC
GAAGTTTGAAGCAGCATTGCCTGATATTATGGAAAGCTTTAATGACTTGTACCGAAACATCACTGGTCGGATTACTGCAGAAGCATTGAAGGAGAGAGTGATGAAAGCTCTCCAGGTTTGGGCCGACTGGTTTCTCTTTTCAGATGCTTATGTGAATGGACTGAGAGCAACTTTTCTTCGGTCTGGAAATTCAGGTGTCC
CTCCTTTTCATTCAATATGTGGAGATGCCCCACCATTGAAGGACCTTGATAATTCTGAAGCCACTCTTATAGACATGTCAGAAGGAGCTGGTCCTAGTCAAGATGCTGCTCTGGCAATTGGAGAGGGAGCAGCAGCTCGAGAATTGTTTAGTATTCCTCTTGTGGAGCTTGAAAGACGGTGTAGGCAGAATGGCTTATCT
ATTCGTGGTGGTAGGGAGGTAATGGTTTCTCGATTGCTTAGCTTAGAAGAAGCAGAGAAGCTTAAGAACCAAGATCAAGACGAGGATGTCAGATATGGGTATAACTTTGCTATCGGAGGGAAGCATGCAAGAGAAACTGATGCTTATTCAAAATCGGGAGGGGGAAGGTGGAGCTCAGGTGAAGAAAGAAAATCCATATG
TGATGATGACAAGGACTATATGTCCAGGTCTAGGCAAGGTGTTCAGGAAGAATCATCTTTATGGTCACGGGCTGAGGAGCCCGAAGCAATGGATGCCTCTAGCAGTGGAACTTTACCAGACAATACTTCTTCAGTGGGGCTCTTAAAGTCATCAATCCCACAGCCAGAACTAAAACATTTAACAAGCAATTCTATGAAAA
CACATCCTGCATTACAGTCTTCAAAGTGGACTCGTGAAGATGATGGAACCGATACAGAGGATAAGGCAGAGCTTAAGGGACTTGGTTTGAATTACTCTTCCTCTGGTAGCGACGACATATTTGGGGGTTCTGTGAAAGATGACGAACAAGAAGTGACAGTGGACAGCATTGCTTCTGCTCTTAATGACACTGGAATGGAT
GAAGGTCGCAGGCAAAAGCTACGCCAATTGGAGGTAACACTAATGGAGTATCGTGAGTCTCTTGAAGAACGTGGCACTAAGAATGCTGAAGAAATTGAAAGAAAAGTCTCTGCACACAGAAAGAGATTAGAAGCTGAATATGGGTTAATAGATCCTGTGACTAACAAAGACAATAAATCAGATTCTGGAAACTACAGGCA
TTCGTCTCGGATGGCAGgtaatgcatggaactgtatgtgtactggattgtatttgattaaagtgagttcaatttgaagtctctggtgcttggaaattgcagcactttttaagtcagatttataacaactggtatctatattaataatatttttgtggcttacttattttactttgtgattggtgctaccagAGAGATTCT
CTCTGGAACAGAAGGAAAGGCGAGATGATAATAGAGATTCATCTTCAAAGAAGCGTAGTCGCAGTGGAAACCGTAGCAAGAGTCCCTCACACAGATTAAGTAAAGACAGGGAAAAAGAGGACAGGGAGAAGGGTTTTGATGGGGATGGGGACCGAGATCCTGATACTGATTCTGTTCGTCGTGAAAGAGATAGACTTCGT
GATTCTGATGCTGGAAGGGGGAGAGGGAGGAGTGGCAGTAGAGAACATGACAATCATGACAGGGATAGGGACAGAGACAGGGAGAAGGGCAAGGGAAGAGAGAGGGATAGGGATCGTGATAGAGAAAGGGAAAAGGAAAGGGATAGAGATAGGGAAAAGGAAAAGGATAGAGATAGGGAAAAGAGGAGCAGAAGAAGCTA
GGCATTTACTTTATCATCTTCTTGTGCTAATATGTCCTGAATTTTTATTTGAGTTGTGATATCTATACAAAGTAGGTAGTTTTCTTTCAGAGTTAGGTTTAAAAAAATATTTCTTTGCCTTCGAGGTTTTGGATTCAAGTTAAATTTTATAGCCTGCATGATTAATGCAGAATTCCATTATTGAAATTCAATTTGATGCA
GAGTTGTCCCATAAGCACACTAAGGCGGTTTCAAAGTATATGAGGTGACTTCTAACAATGTTTCATTTCTCATGTAATAGAAATTGATTCTGATGTGCGTGCACTTAGAACCTGATCTGTGAAAGTGTTGTTTGTTATATTTTCTCTCGTTTTTGAGGTACTGATGAGTTGTCTAGACGCCCAGAATATGCATACTTATG
ATGTAGGTGATTAGCTCCCCATGTTTCAAAGGCCTATGTTTTTCAGCTGGCTAACCTTCTAAAGGAGTATTCAAACCAGCAGAGAGTTTATGCAGTCGAGCATAACTATTACCATATTATATATATTTTCTCTGCTGAATTCGTCAAGGGTCATGGAAGTGAATTATCTGAAATACGTTGCCCTTATCAAGTGACTCTAT
GACAGGTTTCTTGGAATCTACTCAGGGACCTTAATTGTAAATTTGTCCACGATTGCAGGTGGCGCTGTTCTTGAGTGTATTTGATTGCTTGCCTCTTTCTTCCATTCCTATGTTTTCTGAATTAAATTCTTTGAAGGTTGTATAGCCTGTAGGCATTATACTCTTTTCAAACAAACACTTTCGGATTTAACCCAATGCAG
ATACTGACATTATCTGCAAAGAGGAGATTAAGCGCAAAGATAGTGTTGAGCATATCAAAGTTGAGAATGCTTGTAAAGATTTAAGAGACGAGAGTCGAGACTAACTGTTTTAGAATCAAGCCATTAAAAGACAATACTACATTACAAGACAATCCTACATGCAAGGATAATTTGATTATAATAGTGAATTAGCCAGAAAA
TGTAAGTTTATTGGCATTGTTGTTCTACTTACTTCCAGAAATCCTTTTTCGC
Intron 6 GTTTGTACAT ... CTTAAGGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 29.11 | 114.7 | 47 | 25.2 |
| A2 | 23.77 | 80.5 | 25 | 14 |
| A3 | 27.11 | 110.3 | 41 | 12.3 |
| A4 | 25.88 | 97.8 | 34 | 16 |
| A5 | 49.3 | 23.7 | 23 | 2.8 |
| A6 | 41.67 | 2.8 | 2 | 0.4 |
| A7 | 27.9 | 54.7 | 21 | 4.2 |
| A8 | 26.35 | 47.7 | 17 | 5.5 |
| A9 | 23.38 | 65.7 | 20 | 4.5 |
| A10 | 30.67 | 49.8 | 22 | 2.9 |
>TRINITY_DN120299_c0_g2_i3 from sample A2 / Example spliced isoformGGCTGGCAATTACATTATTTAGAGCTTAATCAAGAATTATTGCTTCATCTAGTAGGGCTTATGCTCTGCACTTGGTGACTTAATGTTTTGAAGTTTCGAAGTTCAAAATCAGGATATTGATTTATTGATAACTACTTTTCATATCTTTATTTGCTTTCATGTATAGTAGTTGAGTTACTAAAAAGTGTTCTTGCAGATAT
GTGCCCTCATTTATACCTCCTGGATTGGCAGCTACATCTAATAAATCAAAGGATTCAGAGAAAAAGAAAGAAGAGGAAAGACCGAAGGAAAGGGAAAAGGGGAGATTGCGCAACATTGACAATTTCATGGAAGAACTAAAGGCTGAGCAAGAGTTGAGAGACAAACGAAATCAGGAACGTGGACATCGACAAAGGGAGGG
GAGGCAGATAGAAAATGCAGCACCTTCAAGTCGATTCGATGAGCTTCCAGATGAACTTGAATTGTTTGGAAAATTGTCAGGATCAGTCGATGATGGGGATCCTCAGACAACTAATCTTTATGTTGGAAATTTATCACCTCAGGTGGATGAAAATTTCCTTCTACGGACATTTGGACGATTTGGTCCGATTGCCAGTGTCA
AGATCATGTGGCCAAGAACTGAGGAGGAGCGTAGAAGGCAACGCAATTGTGGTTTTGTTGCTTTTATGAATAGGGAAGAAGCTCAAGCAGCAAATGATGAAATGCAAGGTGTTGTTGTGTATGACTATGAATTGAGAATTGGTTGGGGTAAATCTGTGTCACTTCCTTCTCAAGCTCTTCCTGCACCACCACCAGGTCAA
ATGGCTGTCAGAACTAAAGAGGGTGGTAAAGTGGCTTGGTCAGGTCCAGGTGCTCCAACTTGTGTTGTGACAAGTCAGGCTGCTGAGGTGGTTGTCACCCCAAATGTTCCAGACATAGAGGTCATTCCTCCTGAAGATGAGCATCTGCGTCATGTGATTGATACCATGGCAATGTATGTGCTTGATGATGGGTGTCCCTT
TGAACAAGCTATAATGGAAAGAGGACGGGGCAATCCATTGTTTGGATTTTTATTTGATCTTGGATCTAAGGAACATACTTACTATGTTTGGCGGCTCTATTCATTTGCTCAGGGGGATACTCTTCAAAGGTGGAGAACAGAGCCTTTCATCATGATTACAGGAAGTGGGCGGTGGATACCACCACGCTTACCACAACAAA
CAAGTACAAAGAGTCCAGAGCATGAGAAAGCCTCAACTGCAACTTATGCTGCTGGAAGGACCAGGCAGAGAGTGGATCAAGAACGTGCCTTAACAGAGAGCCAAAGAGATGAATTTGAGGACATGCTTCGTGCTTTAACCTTGGAGAGAAGTCAGATAAAAGAAGCAATGGGGTTTGCTCTAGACAATGCCGATGCAGCT
GGCGAGGTAGTTGAGGTACTTACAGAATCTTTGACTCTGAAGGAGACCCCCATTCCAACCAAAGTAGCAAGGCTCATGTTAGTTTCTGATATTCTTCACAATAGTAGCGCTCCTGTGAAAAATGCTTCTGCATACAGGACGAAGTTTGAAGCAGCATTGCCTGATATTATGGAAAGCTTTAATGACTTGTACCGAAACAT
CACTGGTCGGATTACTGCAGAAGCATTGAAGGAGAGAGTGATGAAAGCTCTCCAGGTTTGGGCCGACTGGTTTCTCTTTTCAGATGCTTATGTGAATGGACTGAGAGCAACCTTTCTTCGGTCTGGAAATTCAGGTGTCCCTCCTTTTCATTCAATATGTGGAGATGCCCCACCATTGAAGGACCTTGATAATTCTGAAG
CCACTCTTATAGACATGTCAGAAGGAGCTGGTCCTAGTCAAGATGCTGCTCTGGCAATTGGAGAGGGAGCAGCAGCTCGAGAATTGTTTAGTATTCCTCTTGTGGAGCTTGAAAGACGGTGTAGGCAGAATGGCTTATCTATTCGTGGTGGTAGGGAGGTAATGGTTTCTCGATTGCTTAGCTTAGAAGAAGCAGAGAAG
CTTAAGAACCAAGATCAAGACGAGGATGTCAGATATGGGTATAACTTTGCTATCGGAGGGAAGCATGCAAGAGAAACTGATGCTTATTCAAAATCGGGAGGGGGAAGGTGGAGCTCAGGTGAAGAAAGAAAATCCATATGTGATGATGACAAGGACTATATGTCCAGGTCTAGGCAAGGTGTTCAGGAAGAATCATCTTT
ATGGTCACGGGCTGAGGAGCCCGAAGCAATGGATGCCTCTAGCAGTGGAACTTTACCAGACAATACTTCTTCAGTGGGGCTCTTAAAGTCATCAATCCCACAGCCAGAACTAAAACATTTAACAAGCAATTCTATGAAAACACATCCTGCATTACAGTCTTCAAAGTGGACTCGTGAAGATGATGGAACCGATACAGAGG
ATAAGGCAGAGCTTAAGGGACTTGGTTTGAATTACTCTTCCTCTGGTAGCGACGACATATTTGGGGGTTCTGTGAAAGATGACGAACAAGAAGTGACAGTGGACAGCATTGCTTCTGCTCTTAATGACACTGGAATGGATGAAGGTCGCAGGCAAAAGCTACGCCAATTGGAGGTAACACTAATGGAGTATCGTGAGTCT
CTTGAAGAACGTGGCACTAAGAATGCTGAAGAAATTGAAAGAAAAGTCTCTGCACACAGAAAGAGATTAGAAGCTGAATATGGGTTAATAGATCCTGTGACTAACAAAGACAATAAATCAGATTCTGGAAACTACAGGCATTCGTCTCGGATGGCAGAGAGATTCTCTCTGGAACAGAAGGAAAGGCGAGATGATAATAG
AGATTCATCTTCAAAGAAGCGTAGTCGCAGTGGAAACCGTAGCAAGAGTCCCTCACACAGATTAAGTAAAGACA
>TRINITY_DN120299_c0_g2_i6 from sample A2 / Example unspliced isoform:CGAAAACTGACCAAGTAATGGGTATCCATTAGAAAGCCTTGGACTCCAAAATCCCAATCGCTTGTGGTAGCGAAAGAAATGGAATAGTTACATCATGTATTTATTACCGGCCCGAAAACTGACCAAGTAATGGGTTTAATTATTGATTGGTTTTGTGTTGAGGTGGATCCAAAAGTGACGTGCGTGCGAGGGTATCATCA
CTCCCCCTCAACACTTGCACTTGAAAATCTTTCGAGGCTCTCGGCAGCTTCTATTCGCATGCCAAACCCTGGTACTGTCTGATGAGAAGATGAATTCATTTTCAGTGATTCGAAAGAAGACCCCTTTTCAAAAACATAGAGAAGAAGAGGAAGCTAAGAAAAAGAGAGCAGATGAAGAAGCAGCTCGTTTGTATGAAGAA
TTTGTCGAATCATTTAAGGGAGATGATGTTCCTGGTGGAAAAGCATTTGTGCGGGGAGAGACTATCAATCCCGATGATCCAGGAAAAACTGGAAATGAAGGCATGTCATCCAAAGAAGGGGCTTCTGGTTCAAAGAAAGGAAGCAGATATGTGCCCTCATTTATACCTCCTGGATTGGCAGCTACATCTAATAAATCAAA
GGATTCAGAGAAAAAGAAAGAAGAGGAAAGACCGAAGGAAAGGGAAAAGGGGAGATTGCGCAACATTGACAATTTCATGGAAGAACTAAAGGCTGAGCAAGAGTTGAGAGACAAACGAAATCAGGAACGTGGACATCGACAAAGGGAGGGGAGGCAGATAGAAAATGCAGCACCTTCAAGTCGATTCGATGAGCTTCCAG
ATGAACTTGAATTGTTTGGAAAATTGTCAGGATCAGTCGATGATGGGGATCCTCAGACAACTAATCTTTATGTTGGAAATTTATCACCTCAGGTGGATGAAAATTTCCTTCTACGGACATTTGGACGATTTGGTCCGATTGCCAGTGTCAAGATCATGTGGCCAAGAACTGAGGAGGAGCGTAGAAGGCAACGCAATTGT
GGTTTTGTTGCTTTTATGAATAGGGAAGAAGCTCAAGCAGCAAATGATGAAATGCAAGGTGTTGTTGTGTATGACTATGAATTGAGAATTGGTTGGGGTAAATCTGTGTCACTTCCTTCTCAAGCTCTTCCTGCACCACCACCAGGTCAAATGGCTGTCAGAACTAAAGAGgtttgtacatgaatttagaaatgtggttt
tgcattccattttcaaggagacttatttagagatggtgtttgtgcatttagttatactcttttggctgagaagttaattgtagtttgtttttttaaaggaaaatgtagctttgtcaaattgtttgattggaaggttgtgcagtctttgagtgggttatactacttttaggccaggtttttttctggatttatgcagtttt
ttattcatctacttgatattatgatgttttccttaaggcagGGTGGTAAAGTGGCTTGGTCAGGTCCAGGTGCTCCAACTTGTGTTGTGACAAGTCAGGCTGCTGAGGTGGTAAGTTCTTTTCTGTAATGTACCATCTGATATGGGTTCAATTAGAGTTTTCATCATGCTACTGAGGTGTGTGCTTGCTATGATATGTAT
CTTAACTTTCATTCATACCTGTATATTCAAATAATTAGTTTTGTGCTGGTAGACAACACACTTGAATTTTGTTTTATTTGCATTGAAGGACAGAGCTAGTTTCGTATTAGTTGCTTGAAATATGCTAAACTCGTTTATTTCTGATGTCTAACCAAGAATTATTAGGTTCTTGTATCTTGCCTCCCACTTCTTCCCCCAGG
GAGGATGCATTTGCGAGGATATAAGGATTAGACCCAACCCAAGGGATGACTCCAAACAACCCTATAGGTTTTTGGCTATGTTACCAGGTTTGCCCTGGTACACATCCGTATCTGGAAGGGATATGGCCATTTGTTTTGTTGGAAAAAAGTAGTCTTTATTTAAAAAACGGTGAAAACTTACATTACAATTCAGAATCTGA
TTGGGTGCGACAGCATTCCCTGCAATTATCTAAAGTCCTCAAAGCAAAGAACACTATAATGAACACAAGGTAAAGATTGCTAGCATCTTATCTCTTCTCTGCCAAGAAGTCATATGGCTGGATTTAATGAATGCTGTTTCCTTTCACTGTTTAACCTGAGTGCATCCTTGATCATCTGAACCATGCCCGAGTTCCACTGT
ATTTGGTTGGGATTCGTTGATAACTAACATCAGAAACTGAAAGGCTTGTTTTCCTTCCTTTATCTTCCTGAATCGGAGAGGTGACTTATAGTTCCAAAAAGGAACCCTGAGAATGGTGGCTAGGAGGATCATCTTTTTCTGTTTAGTTGGAGTCTAGAGTTTCCTGATGAGAATCTGAGGGCTGATTGTCTTCAATGGTT
GGGGTCTTATCCATAGAACCCATAAAAGACTTTGAATTTGTGGCTATTGGATCAATGAAATGGTTGTTCTCATCTACACCTTTCC