sp|Q5PNU3|AMSH3_ARATH ----> AMSH-like ubiquitin thioesterase 3
Intron 1 GTAAATATAC ... CTGGACGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 25.11 | 30.8 | 10 | 0 |
| A2 | 26.39 | 51 | 18 | 0 |
| A3 | 32.59 | 31.3 | 15 | 2 |
| A4 | 36.99 | 28.8 | 16 | 3 |
| A5 | 37.5 | 5.3 | 3 | 0 |
| A6 | 29.44 | 81.8 | 33 | 0 |
| A7 | 28.98 | 81 | 32 | 0 |
| A8 | 32.61 | 36.5 | 17 | 0 |
| A9 | 31.73 | 80.3 | 37 | 0 |
| A10 | 31.91 | 73.8 | 34 | 0 |
>TRINITY_DN98637_c0_g1_i8 from sample A4 / Example spliced isoformCATAAACGCCCACAAATGTTGTCATGAGTGATTTTGATAAAAGTCCGTCAAGCGAGTTGGAGTCACAAAGACTCCATTTTCGGGCGCGTATAAAATATGCTGTGAAAGACGAGAGAAGCAAAGGAAAGAGAACGGAGGCTAATTCATTCACCCGGCCATCGATTTCTTCAGGACCTCAAATGACATGATCGCCTTCGTCT
GCTCATAAGTTCATGAAGATGAGGGCGCCTTCGAAAGCGTTGAGTATAGCCGCCAGCACCCAGAAAGTCGATGTCGACAATCGCATGTCCCTTAGATATTACTACCGGATTGCTGATAATATGCTCAAACAGGCGAACATTTATAGGGAAGAGAAGAATCTTATTGATTTGTACATTATACTTCTGCGGTTCTCAAGTTT
AGTCACAGAAACTATACCAAATCATCAAGACTATCAAACATCCTATCCAAGGGAGAAGGCCGAGTACAGAAAGAAATTATTGAATGTTGTGAGTGAGCTGGAAAGACTTAAACCAGCGGTACAACGACAAGTTGATGAACTGAACAAAACATACGCAAGTTCATCCTCTTCCAAGGAAGCTAGTGATGGTTCTTTCGAGT
GGCCTCCCCGCAGGAACCAAGTTTTTCTAACCTATGATAATGAGAAGAGTAATGGAAGCATTGGAGTAAATGGTACATTGCAAAATTCTTGGAAGGCTAATGATCTTAGTAGGGACCGACGGTTATACTCTAATCAAATTGAAGACCGGTTCAGCAAGCTATCTTTTACTATACCTCCACCAAAGGAAGAAACATTATCG
AGACACTCATTGCTTGGACCAAATGGTCTTCGTGGTCAATGGCAAGCACCCATTAGTGGTACAAGGGTGCAATATCCCAGCCATGGTGATTTGACTCCAATTGAAATACCAAGGTTAGGTTCTGAACTGTTTTGCACAGAGAGTAGAAAGTATGGTTATTAATGATTATGTGAAAGCTGTGAGTGTGAACTTGTGAAGTA
TCTAGAACTTGGCAGATCTTGGATTTTGTTGTGAAACTGAATTGGTTTTATGTTTGAAAATGTTTTTGTCCCGAGGATTTCTACTACTTTTCGTTTTCATTATGG
>TRINITY_DN98637_c0_g1_i1 from sample A4 / Example unspliced isoform:AGTAATGGAAGCATTGGAGTAAATGGTACATTGCAAAATTCTTGGAAGGCTAATGATCTTAGTAGGGACCGACGGTTATACTCTAATCAAATTGAAGACCGGTTCAGCAAGCTATCTTTTACTATACCTCCACCAAAGGAAGAAACATTATCGAGACACTCATTGCTTGGACCAAATGGTCTTCGTGGTCAATGGCAAGC
ACCCATTAGTGGTACAAGGgtaaatatactataatgctctgaaactcttgttctttccactagtaatttgtaattggcagtatgcattaattgttacaactggacgcagGTGCAATATCCCAGCC
Intron 2 GTGAGTTTTG ... TTGCAACCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 15.01 | 29 | 5.3 | 1 |
| A2 | 4.41 | 16 | 0.8 | 3 |
| A3 | 16.27 | 21 | 4.3 | 4 |
| A4 | 15.44 | 15 | 2.8 | 2 |
| A5 | 1.67 | 14 | 0.3 | 0 |
| A6 | 4.92 | 106 | 6.5 | 0 |
| A7 | 3.17 | 69 | 2.5 | 0 |
| A8 | 4.38 | 80 | 4.3 | 0 |
| A9 | 3.13 | 70 | 2.5 | 0 |
| A10 | 3.57 | 54 | 2.3 | 0 |
>TRINITY_DN120333_c3_g1_i4 from sample A1 / Example spliced isoformTTGACTCCAATTGAAATACCAAGGTTAGGTTCTGAACTGTTTTGCACAGAGAGTAGAAAGTATGGTTATTAATGATTATGTGAAAGCTGTGAGTGTGAACTTGTGAAGTATCTAGAACTTGGCAGATCTTGGATTTTGTTGTGAAACTGAATTGGTTTTATGTTTGAAAATGTTTTTGTCCCGAGGATTTCTACTACTTT
TCGTTTTCATTATGGTCATCCTGATTTATTCTTATTTCTTTTTCTATATATCTATTTCTGAAAAGCTTTGAACAAAGTGGGCAAAATAATCTTCCGATATTAGAGGTGGGCAGTTTGTCAACATCTCAGAGCACTGGAACAGAATTATCTCTGTCATTGGAAGCTAATTCAAGGCCTCAAGTGAATGATTTGTCATCTCT
TTCTACATATGGCTCTGTTGAGACTCCTGTTCTTCCAAATATTGTGAGACAACCTTCTCCTCCGCCTGTTCTTGCTCCTGTACAAAACTTGCCTGCTGGATTGGACACATTGACGCATGTTTCTCATTTGAATGTGGCTGATCCTAGACCTGGGCCTGCAAAATCATTACAAGATGATCTGGCAAAGTCTAAAAGTCCTC
AATATGTACAAATATCAGTAAAAATGATGGATGATTTCATGAACCTTGCCAAGTCTAACACGCAAAAAAATTTAGAAACCTGCGGTGTACTTGCAGGGTCACTTAAAAAACGAACATTTTATGTCACAACTCTTATTATTCCAAAGCAGGAATCAACGTCTGATTCATGTCAGACTATGAATGAGGAAGAGATATATGAT
GTCCAAGATAAGCGTTCTCTTTTCCCTCTCGGATGGATTCATACACATCCTTCGCAGACTTGTTTTATGTCATCAGTTGATCTCCACACTCATTATTCATATCAGGTTATGTTACCCGAAGCTATTGCTATTGTTATGGCTCCCACAGACACAACAAAAACCTATGGTATTTTCCATTTATCGGATCCCGCGGGTGTGAA
TGTCATAAAACAATGCCAGCAGCGTGGCTTTCATCCTCATGAAGAACCTGCGGATGGTAGCCCGATATATGAACATTGTTCTCATGTTTATATAAACTCAAATCTAAAATATGATGTGATCGATCTTCGATAATCTAAAGGACTTATGATATTGAGGCATTTGGCCTCAATTCCTGAAAGCTACCAGTAATGATTTCATT
AGTGACGGTCACTGTTTGATTTCATCCCTTATATTTGTATGTGGTATGGATTTTAGTTCTTCATTTGTTCATTTCAAATGGGCACACACTTTGTGTAAACATTTACTGGAATGATTATTTTGACGGCGAAAAAAATAGATTGTCTTTACAAGATCTCTTATTGCAGAGTTAAAAATAACTGTGTTTGTTTCACCTGTATA
AGTTAGATTTGCTGGTCATTTCACCTTTATACTGATATAAATTGACGGGATTATTTGAATGCAAAAATAATAATGTATATGGTCGAACTGTTTGAAATTTTTCACTGTAAAATCCCTCTGGAAGACTTGGATAGCCCATGTTGATACGAGAAGCC
>TRINITY_DN120333_c3_g1_i3 from sample A1 / Example unspliced isoform:GCGAGTTGGAGTCACAAAGACTCCATTTTCGGGCGCGTATAAAATATGCTGTGAAAGACGAGAGAAGCAAAGGAAAGAGAACGGAGGCTAATTCATTCACCCGGCCATCGATTTCTTCAGGACCTCAAATGACATGATCGCCTTCGTCTGCTCATAAGTTCATGAAGATGAGGGCGCCTTCGAAAGCGTTGAGTATAGCC
GCCAGCACCCAGAAAGTCGATGTCGACAATCGCATGTCCCTTAGATATTACTACCGGATTGCTGATAATATGCTCAAACAGGCGAACATTTATAGGGAAGAGAAGAATCTTATTGATTTGTACATTATACTTCTGCGGTTCTCAAGTTTAGTCACAGAAACTATACCAAATCATCAAGACTATCAAACATCCTATCCAAG
GGAGAAGGCCGAGTACAGAAAGAAATTATTGAATGTTGTGAGTGAGCTGGAAAGACTTAAACCAGCGGTACAACGACAAGTTGATGAACTGAACAAAACATACGCAAGTTCATCCTCTTCCAAGGAAGCTAGTGATGGTTCTTTCGAGTGGCCTCCCCGCAGGAACCAAGTTTTTCTAACCTATGATAATGAGAAGAGTA
ATGGAAGCATTGGAGTAAATGGTACATTGCAAAATTCTTGGAAGGCTAATGATCTTAGTAGGGACCGACGGTTATACTCTAATCAAATTGAAGACCGGTTCAGCAAGCTATCTTTTACTATACCTCCACCAAAGGAAGAAACATTATCGAGACACTCATTGCTTGGACCAAATGGTCTTCGTGGTCAATGGCAAGCACCC
ATTAGTGGTACAAGGGTGCAATATCCCAGCCATGGTGATTTGACTCCAATTGAAATACCAAGCTTTGAACAAAGTGGGCAAAATAATCTTCCGATATTAGAGGTGGGCAGTTTGTCAACATCTCAGAGCACTGGAACAGAATTATCTCTGTCATTGGAAGCTAATTCAAGGCCTCAAGTGAATGATTTGTCATCTCTTTC
TACATATGGCTCTGTTGAGACTCCTGTTCTTCCAAATATTGTGAGACAACCTTCTCCTCCGCCTGTTCTTGCTCCTGTACAAAACTTGCCTGCTGGATTGGACACATTGACGCATGTTTCTCATTTGAATGTGGCTGATCCTAGACCTGGGCCTGCAAAATCATTACAAGATGATCTGGCAAAGTCTAAAAGTCCTCAAT
ATGTACAAATATCAGTAAAAATGATGGATGATTTCATGAACCTTGCCAAGTCTAACACGCAAAAAAATTTAGAAACCTGCGGTGTACTTGCAGGGTCACTTGTAAGTTTTTAAACTATTATTCGCAAGTGGATATTAAATTGGTGGTGGGGATGAGGATGCATTTGGATTTGATTTAGCTGCACTTAATGGACTTAGTTC
TTACAAACCTGATACTCTGTATTTTCAGAAAAAACGAACATTTTATGTCACAACTCTTATTATTCCAAAGCAGGAATCAACGTCTGATTCAgtgagttttgactctagcattatttccttaggaaaaactatatccagtttttttctacagtggatatgaaatactgtttattaaatctatgaaatcctttattgcaacc
agTGTCAGACTATGAATGAGGAAGAGATATATGATGTCCAAGATAAGCGTTCTCTTTTCCCTCTCGGATGGATTCATGTAAGTCATTTTATGTCTGTTTTCTTTTAGTTTTCAAGCTTGTTTATGTCTATTGCAG
Intron 3 GTGAGACAAC ... CTGATCCTAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 52.27 | 31 | 35 | 33 |
| A2 | 54.72 | 43 | 77 | 27 |
| A3 | 54.87 | 33 | 52 | 28.3 |
| A4 | 56.82 | 16 | 24 | 18.3 |
| A5 | 61.88 | 18 | 42 | 16.5 |
| A6 | 56.66 | 64 | 95 | 72.8 |
| A7 | 53.1 | 78 | 117 | 60 |
| A8 | 57.89 | 48 | 82 | 50.3 |
| A9 | 69.45 | 39 | 95 | 82.5 |
| A10 | 65.14 | 46 | 83 | 89.3 |
>TRINITY_DN120333_c3_g1_i6 from sample A1 / Example spliced isoformGCGAGTTGGAGTCACAAAGACTCCATTTTCGGGCGCGTATAAAATATGCTGTGAAAGACGAGAGAAGCAAAGGAAAGAGAACGGAGGCTAATTCATTCACCCGGCCATCGATTTCTTCAGGACCTCAAATGACATGATCGCCTTCGTCTGCTCATAAGTTCATGAAGATGAGGGCGCCTTCGAAAGCGTTGAGTATAGCC
GCCAGCACCCAGAAAGTCGATGTCGACAATCGCATGTCCCTTAGATATTACTACCGGATTGCTGATAATATGCTCAAACAGGCGAACATTTATAGGGAAGAGAAGAATCTTATTGATTTGTACATTATACTTCTGCGGTTCTCAAGTTTAGTCACAGAAACTATACCAAATCATCAAGACTATCAAACATCCTATCCAAG
GGAGAAGGCCGAGTACAGAAAGAAATTATTGAATGTTGTGAGTGAGCTGGAAAGACTTAAACCAGCGGTACAACGACAAGTTGATGAACTGAACAAAACATACGCAAGTTCATCCTCTTCCAAGGAAGCTAGTGATGGTTCTTTCGAGTGGCCTCCCCGCAGGAACCAAGTTTTTCTAACCTATGATAATGAGAAGAGTA
ATGGAAGCATTGGAGTAAATGGTACATTGCAAAATTCTTGGAAGGCTAATGATCTTAGTAGGGACCGACGGTTATACTCTAATCAAATTGAAGACCGGTTCAGCAAGCTATCTTTTACTATACCTCCACCAAAGGAAGAAACATTATCGAGACACTCATTGCTTGGACCAAATGGTCTTCGTGGTCAATGGCAAGCACCC
ATTAGTGGTACAAGGGTGCAATATCCCAGCCATGGTGATTTGACTCCAATTGAAATACCAAGCTTTGAACAAAGTGGGCAAAATAATCTTCCGATATTAGAGGTGGGCAGTTTGTCAACATCTCAGAGCACTGGAACAGAATTATCTCTGTCATTGGAAGCTAATTCAAGGCCTCAAGTGAATGATTTGTCATCTCTTTC
TACATATGGCTCTGTTGAGACTCCTGTTCTTCCAAATATTACCTGGGCCTGCAAAATCATTACAAGATGATCTGGCAAAGTCTAAAAGTCCTCAATATGTACAAATATCAGTAAAAATGATGGATGATTTCATGAACCTTGCCAAGTCTAACACGCAAAAAAATTTAGAAACCTGCGGTGTACTTGCAGGGTCACTTAAA
AAACGAACATTTTATGTCACAACTCTTATTATTCCAAAGCAGGAATCAACGTCTGATTCATGTCAGACTATGAATGAGGAAGAGATATATGATGTCCAAGATAAGCGTTCTCTTTTCCCTCTCGGATGGATTCATACACATCCTTCGCAGACTTGTTTTATGTCATCAGTTGATCTCCACACTCATTATTCATATCAGGT
TATGTTACCCGAAGCTATTGCTATTGTTATGGCTCCCACAGACACAACAAAAACCTATGGTATTTTCCATTTATCGGATCCCGCGGGTGTGAATGTCATAAAACAATGCCAGCAGCGTGGCTTTCATCCTCATGAAGAACCTGCGGATGGTAGCCCGATATATGAACATTGTTCTCATGTTTATATAAACTCAAATCTAA
AATATGATGTGATCGATCTTCGATAATCTAAAGGACTTATGATATTGAGGCATTTGGCCTCAATTCCTGAAAGCTACCAGTAATGATTTCATTAGTGACGGTCACTGTTTGATTTCATCCCTTATATTTGTATGTGGTATGGATTTTAGTTCTTCATTTGTTCATTTCAAATGGGCACACACTTTGTGTAAACATTTACT
GGAATGATTATTTTGACGGCGAAAAAAATAGATTGTCTTTACAAGATCTCTTATTGCAGAGTTAAAAATAACTGTGTTTGTTTCACCTGTATAAGTTAGATTTGCTGGTCATTTCACCTTTATACTGATATAAATTGACGGGATTATTTGAATGCAAAAATAATAATGTATATGGTCGAACTGTTTGAAATTTTTCACTG
TAAAATCCCTCTGGAAGACTTGGATAGCCCATGTTGATACGAGAAGCC
>TRINITY_DN120333_c3_g1_i2 from sample A1 / Example unspliced isoform:GCGAGTTGGAGTCACAAAGACTCCATTTTCGGGCGCGTATAAAATATGCTGTGAAAGACGAGAGAAGCAAAGGAAAGAGAACGGAGGCTAATTCATTCACCCGGCCATCGATTTCTTCAGGACCTCAAATGACATGATCGCCTTCGTCTGCTCATAAGTTCATGAAGATGAGGGCGCCTTCGAAAGCGTTGAGTATAGCC
GCCAGCACCCAGAAAGTCGATGTCGACAATCGCATGTCCCTTAGATATTACTACCGGATTGCTGATAATATGCTCAAACAGGCGAACATTTATAGGGAAGAGAAGAATCTTATTGATTTGTACATTATACTTCTGCGGTTCTCAAGTTTAGTCACAGAAACTATACCAAATCATCAAGACTATCAAACATCCTATCCAAG
GGAGAAGGCCGAGTACAGAAAGAAATTATTGAATGTTGTGAGTGAGCTGGAAAGACTTAAACCAGCGGTACAACGACAAGTTGATGAACTGAACAAAACATACGCAAGTTCATCCTCTTCCAAGGAAGCTAGTGATGGTTCTTTCGAGTGGCCTCCCCGCAGGAACCAAGTTTTTCTAACCTATGATAATGAGAAGAGTA
ATGGAAGCATTGGAGTAAATGGTACATTGCAAAATTCTTGGAAGGCTAATGATCTTAGTAGGGACCGACGGTTATACTCTAATCAAATTGAAGACCGGTTCAGCAAGCTATCTTTTACTATACCTCCACCAAAGGAAGAAACATTATCGAGACACTCATTGCTTGGACCAAATGGTCTTCGTGGTCAATGGCAAGCACCC
ATTAGTGGTACAAGGGTGCAATATCCCAGCCATGGTGATTTGACTCCAATTGAAATACCAAGCTTTGAACAAAGTGGGCAAAATAATCTTCCGATATTAGAGGTGGGCAGTTTGTCAACATCTCAGAGCACTGGAACAGAATTATCTCTGTCATTGGAAGCTAATTCAAGGCCTCAAGTGAATGATTTGTCATCTCTTTC
TACATATGGCTCTGTTGAGACTCCTGTTCTTCCAAATATTgtgagacaaccttctcctccgcctgttcttgctcctgtacaaaacttgcctgctggattggacacattgacgcatgtttctcatttgaatgtggctgatcctagACCTGGGCCTGCAAAATCATTACAAGATGATCTGGCAAAGTCTAAAAGTCCTCAAT
ATGTACAAATATCAGTAAAAATGATGGATGATTTCATGAACCTTGCCAAGTCTAACACGCAAAAAAATTTAGAAACCTGCGGTGTACTTGCAGGGTCACTTAAAAAACGAACATTTTATGTCACAACTCTTATTATTCCAAAGCAGGAATCAACGTCTGATTCATGTCAGACTATGAATGAGGAAGAGATATATGATGTC
CAAGATAAGCGTTCTCTTTTCCCTCTCGGATGGATTCATACACATCCTTCGCAGACTTGTTTTATGTCATCAGTTGATCTCCACACTCATTATTCATATCAGGTTATGTTACCCGAAGCTATTGCTATTGTTATGGCTCCCACAGACACAACAAAAACCTATGGTATTTTCCATTTATCGGATCCCGCGGGTGTGAATGT
CATAAAACAATGCCAGCAGCGTGGCTTTCATCCTCATGAAGAACCTGCGGATGGTAGCCCGATATATGAACATTGTTCTCATGTTTATATAAACTCAAATCTAAAATATGATGTGATCGATCTTCGATAATCTAAAGGACTTATGATATTGAGGCATTTGGCCTCAATTCCTGAAAGCTACCAGTAATGATTTCATTAGT
GACGGTCACTGTTTGATTTCATCCCTTATATTTGTATGTGGTATGGATTTTAGTTCTTCATTTGTTCATTTCAAATGGGCACACACTTTGTGTAAACATTTACTGGAATGATTATTTTGACGGCGAAAAAAATAGATTGTCTTTACAAGATCTCTTATTGCAGAGTTAAAAATAACTGTGTTTGTTTCACCTGTATAAGT
TAGATTTGCTGGTCATTTCACCTTTATACTGATATAAATTGACGGGATTATTTGAATGCAAAAATAATAATGTATATGGTCGAACTGTTTGAAATTTTTCACTGTAAAATCCCTCTGGAAGACTTGGATAGCCCATGTTGATACGAGAAGCC
Intron 4 GTAAGTTTTT ... GTATTTTCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 34.38 | 21 | 11 | 4 |
| A2 | 29.73 | 26 | 11 | 1 |
| A3 | 15.79 | 16 | 3 | 1 |
| A4 | 27.78 | 13 | 5 | 11 |
| A5 | 12.5 | 7 | 1 | 0 |
| A6 | 23.39 | 95 | 29 | 0 |
| A7 | 26.51 | 61 | 22 | 0 |
| A8 | 21.25 | 63 | 17 | 0 |
| A9 | 26.21 | 76 | 27 | 0 |
| A10 | 21.82 | 43 | 12 | 0 |
>TRINITY_DN120333_c3_g1_i4 from sample A1 / Example spliced isoformTTGACTCCAATTGAAATACCAAGGTTAGGTTCTGAACTGTTTTGCACAGAGAGTAGAAAGTATGGTTATTAATGATTATGTGAAAGCTGTGAGTGTGAACTTGTGAAGTATCTAGAACTTGGCAGATCTTGGATTTTGTTGTGAAACTGAATTGGTTTTATGTTTGAAAATGTTTTTGTCCCGAGGATTTCTACTACTTT
TCGTTTTCATTATGGTCATCCTGATTTATTCTTATTTCTTTTTCTATATATCTATTTCTGAAAAGCTTTGAACAAAGTGGGCAAAATAATCTTCCGATATTAGAGGTGGGCAGTTTGTCAACATCTCAGAGCACTGGAACAGAATTATCTCTGTCATTGGAAGCTAATTCAAGGCCTCAAGTGAATGATTTGTCATCTCT
TTCTACATATGGCTCTGTTGAGACTCCTGTTCTTCCAAATATTGTGAGACAACCTTCTCCTCCGCCTGTTCTTGCTCCTGTACAAAACTTGCCTGCTGGATTGGACACATTGACGCATGTTTCTCATTTGAATGTGGCTGATCCTAGACCTGGGCCTGCAAAATCATTACAAGATGATCTGGCAAAGTCTAAAAGTCCTC
AATATGTACAAATATCAGTAAAAATGATGGATGATTTCATGAACCTTGCCAAGTCTAACACGCAAAAAAATTTAGAAACCTGCGGTGTACTTGCAGGGTCACTTAAAAAACGAACATTTTATGTCACAACTCTTATTATTCCAAAGCAGGAATCAACGTCTGATTCATGTCAGACTATGAATGAGGAAGAGATATATGAT
GTCCAAGATAAGCGTTCTCTTTTCCCTCTCGGATGGATTCATACACATCCTTCGCAGACTTGTTTTATGTCATCAGTTGATCTCCACACTCATTATTCATATCAGGTTATGTTACCCGAAGCTATTGCTATTGTTATGGCTCCCACAGACACAACAAAAACCTATGGTATTTTCCATTTATCGGATCCCGCGGGTGTGAA
TGTCATAAAACAATGCCAGCAGCGTGGCTTTCATCCTCATGAAGAACCTGCGGATGGTAGCCCGATATATGAACATTGTTCTCATGTTTATATAAACTCAAATCTAAAATATGATGTGATCGATCTTCGATAATCTAAAGGACTTATGATATTGAGGCATTTGGCCTCAATTCCTGAAAGCTACCAGTAATGATTTCATT
AGTGACGGTCACTGTTTGATTTCATCCCTTATATTTGTATGTGGTATGGATTTTAGTTCTTCATTTGTTCATTTCAAATGGGCACACACTTTGTGTAAACATTTACTGGAATGATTATTTTGACGGCGAAAAAAATAGATTGTCTTTACAAGATCTCTTATTGCAGAGTTAAAAATAACTGTGTTTGTTTCACCTGTATA
AGTTAGATTTGCTGGTCATTTCACCTTTATACTGATATAAATTGACGGGATTATTTGAATGCAAAAATAATAATGTATATGGTCGAACTGTTTGAAATTTTTCACTGTAAAATCCCTCTGGAAGACTTGGATAGCCCATGTTGATACGAGAAGCC
>TRINITY_DN120333_c3_g1_i3 from sample A1 / Example unspliced isoform:GCGAGTTGGAGTCACAAAGACTCCATTTTCGGGCGCGTATAAAATATGCTGTGAAAGACGAGAGAAGCAAAGGAAAGAGAACGGAGGCTAATTCATTCACCCGGCCATCGATTTCTTCAGGACCTCAAATGACATGATCGCCTTCGTCTGCTCATAAGTTCATGAAGATGAGGGCGCCTTCGAAAGCGTTGAGTATAGCC
GCCAGCACCCAGAAAGTCGATGTCGACAATCGCATGTCCCTTAGATATTACTACCGGATTGCTGATAATATGCTCAAACAGGCGAACATTTATAGGGAAGAGAAGAATCTTATTGATTTGTACATTATACTTCTGCGGTTCTCAAGTTTAGTCACAGAAACTATACCAAATCATCAAGACTATCAAACATCCTATCCAAG
GGAGAAGGCCGAGTACAGAAAGAAATTATTGAATGTTGTGAGTGAGCTGGAAAGACTTAAACCAGCGGTACAACGACAAGTTGATGAACTGAACAAAACATACGCAAGTTCATCCTCTTCCAAGGAAGCTAGTGATGGTTCTTTCGAGTGGCCTCCCCGCAGGAACCAAGTTTTTCTAACCTATGATAATGAGAAGAGTA
ATGGAAGCATTGGAGTAAATGGTACATTGCAAAATTCTTGGAAGGCTAATGATCTTAGTAGGGACCGACGGTTATACTCTAATCAAATTGAAGACCGGTTCAGCAAGCTATCTTTTACTATACCTCCACCAAAGGAAGAAACATTATCGAGACACTCATTGCTTGGACCAAATGGTCTTCGTGGTCAATGGCAAGCACCC
ATTAGTGGTACAAGGGTGCAATATCCCAGCCATGGTGATTTGACTCCAATTGAAATACCAAGCTTTGAACAAAGTGGGCAAAATAATCTTCCGATATTAGAGGTGGGCAGTTTGTCAACATCTCAGAGCACTGGAACAGAATTATCTCTGTCATTGGAAGCTAATTCAAGGCCTCAAGTGAATGATTTGTCATCTCTTTC
TACATATGGCTCTGTTGAGACTCCTGTTCTTCCAAATATTGTGAGACAACCTTCTCCTCCGCCTGTTCTTGCTCCTGTACAAAACTTGCCTGCTGGATTGGACACATTGACGCATGTTTCTCATTTGAATGTGGCTGATCCTAGACCTGGGCCTGCAAAATCATTACAAGATGATCTGGCAAAGTCTAAAAGTCCTCAAT
ATGTACAAATATCAGTAAAAATGATGGATGATTTCATGAACCTTGCCAAGTCTAACACGCAAAAAAATTTAGAAACCTGCGGTGTACTTGCAGGGTCACTTgtaagtttttaaactattattcgcaagtggatattaaattggtggtggggatgaggatgcatttggatttgatttagctgcacttaatggacttagttc
ttacaaacctgatactctgtattttcagAAAAAACGAACATTTTATGTCACAACTCTTATTATTCCAAAGCAGGAATCAACGTCTGATTCAGTGAGTTTTGACTCTAGCATTATTTCCTTAGGAAAAACTATATCCAGTTTTTTTCTACAGTGGATATGAAATACTGTTTATTAAATCTATGAAATCCTTTATTGCAACC
AGTGTCAGACTATGAATGAGGAAGAGATATATGATGTCCAAGATAAGCGTTCTCTTTTCCCTCTCGGATGGATTCATGTAAGTCATTTTATGTCTGTTTTCTTTTAGTTTTCAAGCTTGTTTATGTCTATTGCAG
Intron 5 GTATGTATTC ... GGCATTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 17.14 | 29 | 0 | 6 |
| A2 | 6.25 | 15 | 0 | 1 |
| A3 | 18.18 | 9 | 0 | 2 |
| A4 | 22.22 | 7 | 0 | 2 |
| A5 | 0 | 4 | 0 | 0 |
| A6 | 17.14 | 116 | 1 | 24 |
| A7 | 20.18 | 87 | 0 | 22 |
| A8 | 13.87 | 118 | 0 | 19 |
| A9 | 16.8 | 104 | 0 | 21 |
| A10 | 14 | 43 | 0 | 7 |
>TRINITY_DN35484_c0_g2_i3 from sample A9 / Example spliced isoformGTCATGAGTGATTTTGATAAAAGTCCGTCAAGCGAGTTGGAGTCACAAAGACTCCATTTTCGGGCGCGTATAAAATATGCTGTGAAAGACGAGAGAAGCAAAGGAAAGAGAACGGAGGCTAATTCATTCACCCGGCCATCGATTTCTTCAGGACCTCAAATGACATGATCGCCTTCGTCTGCTCATAAGTTCATGAAGAT
GAGGGCGCCTTCGAAAGCGTTGAGTATAGCCGCCAGCACCCAGAAAGTCGATGTCGACAATCGCATGTCCCTTAGATATTACTACCGGATTGCTGATAATATGCTCAAACAGGCGAACATTTATAGGGAAGAGAAGAATCTTATTGATTTGTACATTATACTTCTGCGGTTCTCAAGTTTAGTCACAGAAACTATACCAA
ATCATCAAGACTATCAAACATCCTATCCAAGGGAGAAGGCCGAGTACAGAAAGAAATTATTGAATGTTGTGAGTGAGCTGGAAAGACTTAAACCAGCGGTACAACGACAAGTTGATGAACTGAACAAAACATACGCAAGTTCATCCTCTTCCAAGGAAGCTAGTGATGGTTCTTTCGAGTGGCCTCCCCGCAGGAACCAA
GTTTTTCTAACCTATGATAATGAGAAGAGTAATGGAAGCATTGGAGTAAATGGTACATTGCAAAATTCTTGGAAGGCTAATGATCTTAGTAGGGACCGACGGTTATACTCTAATCAAATTGAAGACCGGTTCAGCAAGCTATCTTTTACTATACCTCCACCAAAGGAAGAAACATTATCGAGACACTCATTGCTTGGACC
AAATGGTCTTCGTGGTCAATGGCAAGCACCCATTAGTGGTACAAGGGTGCAATATCCCAGCCATGGTGATTTGACTCCAATTGAAATACCAAGCTTTGAACAAAGTGGGCAAAATAATCTTCCGATATTAGAGGTGGGCAGTTTGTCAACATCTCAGAGCACTGGAACAGAATTATCTCTGTCATTGGAAGCTAATTCAA
GGCCTCAAGTGAATGATTTGTCATCTCTTTCTACATATGGCTCTGTTGAGACTCCTGTTCTTCCAAATATTGTGAGACAACCTTCTCCTCCGCCTGTTCTTGCTCCTGTACAAAACTTGCCTGCTGGATTGGACACATTGACGCATGTTTCTCATTTGAATGTGGCTGATCCTAGACCTGGGCCTGCAAAATCATTACAA
GATGATCTGGCAAAGTCTAAAAGTCCTCAATATGTACAAATATCAGTAAAAATGATGGATGATTTCATGAACCTTGCCAAGTCTAACACGCAAAAAAATTTAGAAACCTGCGGTGTACTTGCAGGGTCACTTAAAAAACGAACATTTTATGTCACAACTCTTATTATTCCAAAGCAGGAATCAACGTCTGATTCATGTCA
GACTATGAATGAGGAAGAGATATATGATGTCCAAGATAAGCGTTCTCTTTTCCCTCTCGGATGGATTCATACACATCCTTCGCAGACTTGTTTTATGTCATCAGTTGATCTCCACACTCATTATTCATATCAGGTTATGTTACCCGAAGCTATTGCTATTGTTATGGCTCCCACAGACACAACAAAAACCTATGGTATTT
TCCATTTATCGGATCCCGCGGGTGTGAATGTCATAAAACAATGCCAGCAGCGTGGCTTTCATCCTCATGAAGAACCTGCGGATGGTAGCCCGATATATGAACATTGTTCTCATGTTTATATAAACTCAAATCTAAAATATGATGTGATCGATCTTCGATAATCTAAAGGTACTATGTTCATCACTTTCCATACTCACACA
AATTTTCCATCTGTTATTATTAGACCAGTACTCAGCAGTCATATTATTGCTTTGGTATTTGTCAGGAACTTAATAGGAAGTTATGTATTTCCTTTTTTGCAATTATTTTGAAGGGGCTTCAACATCTATTAT
>TRINITY_DN35484_c0_g2_i2 from sample A9 / Example unspliced isoform:ATGGCTCCCACAGACACAACAAAgtatgtattcatatctgacggagggcattatcactggattgttttcgtgtatggtttcaagttcgattttgtgtttttaatggtcagcaaatattgctttggcattgcagAACCTATGGTATTTTCCATTTATCGGATCCCGCGGGTGTGAATGTCATAAAACAATGCCAGCAGCGT
GGCTTTCATCCTCATGAAGAACCTGCGGATGGTAGCCCGATATATGAACATTGTTCTCATGTTTATATAAACTCAAATCTAAAATATGATGTGATCGATCTTCGATAATCTAAAGGACTTATGATATTGAGGCATTTGGCCTCAATTCCTGAAAGCTACCAGTAATGATTTCATTAGTGACGGTCACTGTTTGATTTCAT
CCCTTATATTTGTATGTGGTATGGATTTTAGTTCTTCATTTGTTCATTTCAAATGGGCACACACTTTGTGTAAACATTTACTGGAATGATTATTTTGACGGCGAAAAAAATAGATTGTCTTTACAAGATCTCTTATTGCAGAGTTAAAAATAACTGTGTTTGTTTCACCTGTATAAGTTAGATTTGCTGGTCATTTCACC
TTTATACTGATATAAATTGACGGGATTATTTGAATGCAAAAATAATAATGTATATGGTCGAACTGTTTGAAATTTTTCATTGTAAAATCCCTCTGGAAGACTTGGATAGCCCATGTTGATACGAGAAGCCATCTGTAGTTGGTAGAATGCTTGGAGCACCGTTATCATGTCTAATTTTTATTAGACTTGCAGCTTTGGAT
ACCAAGTATATCCTTATTTCATTAAGGTATTTGAATTTCTATTTTTTTTTAAATGTATATTGATAAGTGTAAAGACGGATATTTATTACTGAGTAACTGGGTATTTTAACG
Intron 6 GTACAATTTT ... TGTTCAGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 27.84 | 35 | 14 | 13 |
| A2 | 16.8 | 52 | 13 | 8 |
| A3 | 24.71 | 32 | 14 | 7 |
| A4 | 36.84 | 30 | 25 | 10 |
| A5 | 22.22 | 14 | 5 | 3 |
| A6 | 22.63 | 53 | 18 | 13 |
| A7 | 17.33 | 62 | 15 | 11 |
| A8 | 26.19 | 31 | 14 | 8 |
| A9 | 22.22 | 70 | 15 | 25 |
| A10 | 20 | 36 | 8 | 10 |
>TRINITY_DN98101_c0_g1_i2 from sample A5 / Example spliced isoformTTTCGGGCGCGTATAAAATATGCTGTGAAAGACGAGAGAAGCAAAGGAAAGAGAACGGAGGCTAATTCATTCACCCGGCCATCGATTTCTTCAGGACCTCAAATGACATGATCGCCTTCGTCTGCTCATAAGTTCATGAAGATGAGGGCGCCTTCGAAAGCGTTGAGTATAGCCGCCAGCACCCAGAAAGTCGATGTCGA
CAATCGCATGTCCCTTAGATATTACTACCGGATTGCTGATAATATGCTCAAACAGGCGAACATTTATAGGGAAGAGAAGAATCTTATTGATTTGTACATTATACTTCTGCGGTTCTCAAGTTTAGTCACAGAAACTATACCAAATCATCAAGACTATCAAACATCCTATCCAAGGGAGAAGGCCGAGTACAGAAAGAAAT
TATTGAATGTTGTGAGTGAGCTGGAAAGACTTAAACCAGCGGTACAACGACAAGTTGATGAACTGAACAAAACATACGCAAGTTCATCCTCTTCCAAGGAAGCTAGTGATGGTTCTTTCGAGTGGCCTCCCCGCAGGAACCAAGTTTTTCTAACCTATGATAATGAGAAGAGTAATGGAAGCATTGGAGTAAATGGTACA
TTGCAAAATTCTTGGAAGGCTAATGATCTTAGTAGGGACCGACGGTTATACTCTAATCAAATTGAAGACCGGTTCAGCAAGCTGTAAGTATTATTGCCTTTTTGTGAAGCTAAAGGTACAGCTATAATGCATTGGATTATCTGAAAGGATC
>TRINITY_DN98101_c0_g1_i4 from sample A5 / Example unspliced isoform:TTTCGGGCGCGTATAAAATATGCTGTGAAAGACGAGAGAAGCAAAGGAAAGAGAACGGAGGCTAATTCATTCACCCGGCCATCGATTTCTTCAGGACCTCAAATGACATGATCGCCTTCGTCTGCTCATAAGTTCATGAAGATGAGGGCGCCTTCGAAAGCGTTGAGTATAGCCGCCAGCACCCAGAAAGTCGATGTCGA
CAATCGCATGTCCCTTAGATATTACTACCGGATTGCTGATAATATGCTCAAACAGGCGAACATTTATAGGGAAGAGAAGAATCTTATTGATTTGTACATTATACTTCTGCGGTTCTCAAGTTTAGTCACAGAAACTATACCAAATCATCAAGACTATCAAACATCCTATCCAAGGGAGAAGGCCGAGTACAGAAAGAAAT
TATTGAATGTTGTGAGTGAGCTGGAAAGACTTAAACCAGCGGTACAACGACAAGTTGATGAACTGAACAAAACATACGCAAGTTCATCCTCTTCCAAGGAAGCTAGTGATGGTTCTTTCGAGTGGCCTCCCCGCAGGAACCAAGTTTTTCTAACCTATGATAATGAGAAGgtacaattttgctgggtttactatatggca
agttcatccattctttccagttagaagttgtagtattcgcatcactgagctgtacctttggtccttaacacaaaacttgttcagcagAGTAATGGAAGCATTGGAGTAAATGGTACATTGCAAAATTCTTGGAAGGCTAATGATCTTAGTAGGGACCGACGGTTATACTCTAATCAAATTGAAGACCGGTTCAGCAAGCT
ATCTTTTACTATACCTCCACCAAAGGAAGAAACATTATCGAGACACTCATTGCTTGGACCAAATGGTCTTCGTGGTCAATGGCAAGCACCCATTAGTGGTACAAGGGTGCAATATCCCAGCCATGGTGATTTGACTCCAATTGAAATACCAAGCTTTGAACAAAGTGGGCAAAATAATCTTCCGATATTAGAGGTGGGCA
GTTTGTCAACATCTCAGAGCACTGGAACAGAATTATCTCTGTCATTGGAAGCTAATTCAAGGCCTCAAGTGAATGATTTGTCATCTCTTTCTACATATGGCTCTGTTGAGACTCCTGTTCTTCCAAATATTGTGAGACAACCTTCTCCTCCGCCTGTTCTTGCTCCTGTACAAAACTTGCCTGCTGGATTGGACACATTG
ACGCATGTTTCTCATTTGAATGTGGCTGATCCTAGACCTGGGCCTGCAAAATCATTACAAGATGATCTGGCAAAGTCTAAAAGTCCTCAATATGTACAAATATCAGTAAAAATGATGGATGATTTCATGAACCTTGCCAAGTCTAACACGCAAAAAAATTTAGAAACCTGCGGTGTACTTGCAGGGTCACTTAAAAAACG
AACATTTTATGTCACAACTCTTATTATTCCAAAGCAGGAATCAACGTCTGATTCATGTCAGACTATGAATGAGGAAGAGATATATGATGTCCAAGATAAGCGTTCTCTTTTCCCTCTCGGATGGATTCATACACATCCTTCGCAGACTTGTTTTATGTCATCAGTTGATCTCCACACTCATTATTCATATCAGGTTATGT
TACCCGAAGCTATTGCTATTGTTATGGCTCCCACAGACACAACAAAAACCTATGGTATTTTCCATTTATCGGATCCCGCGGGTGTGAATGTCATAAAACAATGCCAGCAGCGTGGCTTTCATCCTCATGAAGAACCTGCGGATGGTAGCCCGATATATGAACATTGTTCTCATGTTTATATAAACTCAAATCTAAAATAT
GATGTGATCGATCTTCGATAATCTAAAGGACTTATGATATTGAGGC
Intron 7 GTAAGCATCC ... TGATTTGCAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 32.71 | 20.8 | 10 | 1.7 |
| A2 | 20.61 | 27.7 | 7 | 0 |
| A3 | 42.62 | 15.8 | 11 | 3 |
| A4 | 30.45 | 16.3 | 7 | 0 |
| A5 | 27.57 | 8.8 | 3 | 0 |
| A6 | 10.93 | 65.8 | 8 | 0 |
| A7 | 12.86 | 68.5 | 10 | 0 |
| A8 | 16.5 | 46.5 | 9 | 0 |
| A9 | 20.57 | 55.5 | 14 | 0 |
| A10 | 27.94 | 57 | 21 | 0 |
>TRINITY_DN120333_c3_g1_i3 from sample A1 / Example spliced isoformGCGAGTTGGAGTCACAAAGACTCCATTTTCGGGCGCGTATAAAATATGCTGTGAAAGACGAGAGAAGCAAAGGAAAGAGAACGGAGGCTAATTCATTCACCCGGCCATCGATTTCTTCAGGACCTCAAATGACATGATCGCCTTCGTCTGCTCATAAGTTCATGAAGATGAGGGCGCCTTCGAAAGCGTTGAGTATAGCC
GCCAGCACCCAGAAAGTCGATGTCGACAATCGCATGTCCCTTAGATATTACTACCGGATTGCTGATAATATGCTCAAACAGGCGAACATTTATAGGGAAGAGAAGAATCTTATTGATTTGTACATTATACTTCTGCGGTTCTCAAGTTTAGTCACAGAAACTATACCAAATCATCAAGACTATCAAACATCCTATCCAAG
GGAGAAGGCCGAGTACAGAAAGAAATTATTGAATGTTGTGAGTGAGCTGGAAAGACTTAAACCAGCGGTACAACGACAAGTTGATGAACTGAACAAAACATACGCAAGTTCATCCTCTTCCAAGGAAGCTAGTGATGGTTCTTTCGAGTGGCCTCCCCGCAGGAACCAAGTTTTTCTAACCTATGATAATGAGAAGAGTA
ATGGAAGCATTGGAGTAAATGGTACATTGCAAAATTCTTGGAAGGCTAATGATCTTAGTAGGGACCGACGGTTATACTCTAATCAAATTGAAGACCGGTTCAGCAAGCTATCTTTTACTATACCTCCACCAAAGGAAGAAACATTATCGAGACACTCATTGCTTGGACCAAATGGTCTTCGTGGTCAATGGCAAGCACCC
ATTAGTGGTACAAGGGTGCAATATCCCAGCCATGGTGATTTGACTCCAATTGAAATACCAAGCTTTGAACAAAGTGGGCAAAATAATCTTCCGATATTAGAGGTGGGCAGTTTGTCAACATCTCAGAGCACTGGAACAGAATTATCTCTGTCATTGGAAGCTAATTCAAGGCCTCAAGTGAATGATTTGTCATCTCTTTC
TACATATGGCTCTGTTGAGACTCCTGTTCTTCCAAATATTGTGAGACAACCTTCTCCTCCGCCTGTTCTTGCTCCTGTACAAAACTTGCCTGCTGGATTGGACACATTGACGCATGTTTCTCATTTGAATGTGGCTGATCCTAGACCTGGGCCTGCAAAATCATTACAAGATGATCTGGCAAAGTCTAAAAGTCCTCAAT
ATGTACAAATATCAGTAAAAATGATGGATGATTTCATGAACCTTGCCAAGTCTAACACGCAAAAAAATTTAGAAACCTGCGGTGTACTTGCAGGGTCACTTGTAAGTTTTTAAACTATTATTCGCAAGTGGATATTAAATTGGTGGTGGGGATGAGGATGCATTTGGATTTGATTTAGCTGCACTTAATGGACTTAGTTC
TTACAAACCTGATACTCTGTATTTTCAGAAAAAACGAACATTTTATGTCACAACTCTTATTATTCCAAAGCAGGAATCAACGTCTGATTCAGTGAGTTTTGACTCTAGCATTATTTCCTTAGGAAAAACTATATCCAGTTTTTTTCTACAGTGGATATGAAATACTGTTTATTAAATCTATGAAATCCTTTATTGCAACC
AGTGTCAGACTATGAATGAGGAAGAGATATATGATGTCCAAGATAAGCGTTCTCTTTTCCCTCTCGGATGGATTCATGTAAGTCATTTTATGTCTGTTTTCTTTTAGTTTTCAAGCTTGTTTATGTCTATTGCAG
>TRINITY_DN120333_c3_g1_i8 from sample A1 / Example unspliced isoform:GCGAGTTGGAGTCACAAAGACTCCATTTTCGGGCGCGTATAAAATATGCTGTGAAAGACGAGAGAAGCAAAGGAAAGAGAACGGAGGCTAATTCATTCACCCGGCCATCGATTTCTTCAGGACCTCAAATGACATGATCGCCTTCGTCTGCTCATAAGTTCATGAAGATGAGGGCGCCTTCGAAAGCGTTGAGTATAGCC
GCCAGCACCCAGAAAGTCGATGTCGACAATCGCATGTCCCTTAGATATTACTACCGGATTGCTGATAATATGCTCAAACAGGCGAACATTTATAGGGAAGAGAAGAATCTTATTGATTTGTACATTATACTTCTGCGGTTCTCAAGTTTAGTCACAGAAACTATACCAAATCATCAAGACTATCAAACATCCTATCCAAG
GGAGAAGGCCGAGTACAGAAAGAAATTATTGAATGTTGTGAGTGAGCTGGAAAGACTTAAACCAGCGGTACAACGACAAGTTGATGAACTGAACAAAACATACGCAAGTTCATCCTCTTCCAAGGAAGCTAGTGATGGTTCTTTCGAGTGGCCTCCCCGCAGGAACCAAGTTTTTCTAACCTATGATAATGAGAAGAGTA
ATGGAAGCATTGGAGTAAATGGTACATTGCAAAATTCTTGGAAGGCTAATGATCTTAGTAGGGACCGACGGTTATACTCTAATCAAATTGAAGACCGGTTCAGCAAGCTATCTTTTACTATACCTCCACCAAAGGAAGAAACATTATCGAGACACTCATTGCTTGGACCAAATGGTCTTCGTGGTCAATGGCAAGCACCC
ATTAGTGGTACAAGGGTGCAATATCCCAGCCATGGTGATTTGACTCCAATTGAAATACCAAGCTTTGAACAAAGTGGGCAAAATAATCTTCCGATATTAGAGGTGGGCAGTTTGTCAACATCTCAGAGCACTGGAACAGAATTATCTCTGTCATTGGAAGCTAATTCAAGGCCTCAAGTGAATGATTTGTCATCTCTTTC
TACATATGGCTCTGTTGAGACTCCTGTTCTTCCAAATATTGTGAGACAACCTTCTCCTCCGCCTGTTCTTGCTCCTGTACAAAACTTGCCTGCTGGATTGGACACATTGACGCATGTTTCTCATTTGAATGTGGCTGATCCTAGACCTGGGCCTGCAAAATCATTACAAGATGATCTGGCAAAGTCTAAAAGTCCTCAAT
ATGTACAAATAgtaagcatccaattgcaagatctcttttgatgcttttgaatccatgcaaagatgcatgtacacattttttgaaagttaggaagacatagttgtatgcagttttcagaagtacaatactaatgtatctattgaaatgtgatttgcagTCAGTAAAAATGATGGATGATTTCATGAACCTTGCCAAGTCTA
ACACGCAAAAAAATTTAGAAACCTGCGGTGTACTTGCAGGGTCACTT
Intron 8 GTTAGGTTCT ... TTCTGAAAAG
| Sample | Retention score (%) | Exon junction reads | 5'ss reads | 3'ss reads |
| A1 | 36.71 | 50 | 3 | 29 |
| A2 | 19.64 | 45 | 0 | 11 |
| A3 | 9.68 | 28 | 0 | 3 |
| A4 | 24.44 | 34 | 5 | 11 |
| A5 | 37.5 | 5 | 2 | 3 |
| A6 | 24.55 | 83 | 0 | 27 |
| A7 | 15.56 | 76 | 0 | 14 |
| A8 | 20.83 | 38 | 0 | 10 |
| A9 | 17.28 | 67 | 0 | 14 |
| A10 | 26.67 | 88 | 0 | 32 |
>TRINITY_DN120333_c3_g1_i3 from sample A1 / Example spliced isoformGCGAGTTGGAGTCACAAAGACTCCATTTTCGGGCGCGTATAAAATATGCTGTGAAAGACGAGAGAAGCAAAGGAAAGAGAACGGAGGCTAATTCATTCACCCGGCCATCGATTTCTTCAGGACCTCAAATGACATGATCGCCTTCGTCTGCTCATAAGTTCATGAAGATGAGGGCGCCTTCGAAAGCGTTGAGTATAGCC
GCCAGCACCCAGAAAGTCGATGTCGACAATCGCATGTCCCTTAGATATTACTACCGGATTGCTGATAATATGCTCAAACAGGCGAACATTTATAGGGAAGAGAAGAATCTTATTGATTTGTACATTATACTTCTGCGGTTCTCAAGTTTAGTCACAGAAACTATACCAAATCATCAAGACTATCAAACATCCTATCCAAG
GGAGAAGGCCGAGTACAGAAAGAAATTATTGAATGTTGTGAGTGAGCTGGAAAGACTTAAACCAGCGGTACAACGACAAGTTGATGAACTGAACAAAACATACGCAAGTTCATCCTCTTCCAAGGAAGCTAGTGATGGTTCTTTCGAGTGGCCTCCCCGCAGGAACCAAGTTTTTCTAACCTATGATAATGAGAAGAGTA
ATGGAAGCATTGGAGTAAATGGTACATTGCAAAATTCTTGGAAGGCTAATGATCTTAGTAGGGACCGACGGTTATACTCTAATCAAATTGAAGACCGGTTCAGCAAGCTATCTTTTACTATACCTCCACCAAAGGAAGAAACATTATCGAGACACTCATTGCTTGGACCAAATGGTCTTCGTGGTCAATGGCAAGCACCC
ATTAGTGGTACAAGGGTGCAATATCCCAGCCATGGTGATTTGACTCCAATTGAAATACCAAGCTTTGAACAAAGTGGGCAAAATAATCTTCCGATATTAGAGGTGGGCAGTTTGTCAACATCTCAGAGCACTGGAACAGAATTATCTCTGTCATTGGAAGCTAATTCAAGGCCTCAAGTGAATGATTTGTCATCTCTTTC
TACATATGGCTCTGTTGAGACTCCTGTTCTTCCAAATATTGTGAGACAACCTTCTCCTCCGCCTGTTCTTGCTCCTGTACAAAACTTGCCTGCTGGATTGGACACATTGACGCATGTTTCTCATTTGAATGTGGCTGATCCTAGACCTGGGCCTGCAAAATCATTACAAGATGATCTGGCAAAGTCTAAAAGTCCTCAAT
ATGTACAAATATCAGTAAAAATGATGGATGATTTCATGAACCTTGCCAAGTCTAACACGCAAAAAAATTTAGAAACCTGCGGTGTACTTGCAGGGTCACTTGTAAGTTTTTAAACTATTATTCGCAAGTGGATATTAAATTGGTGGTGGGGATGAGGATGCATTTGGATTTGATTTAGCTGCACTTAATGGACTTAGTTC
TTACAAACCTGATACTCTGTATTTTCAGAAAAAACGAACATTTTATGTCACAACTCTTATTATTCCAAAGCAGGAATCAACGTCTGATTCAGTGAGTTTTGACTCTAGCATTATTTCCTTAGGAAAAACTATATCCAGTTTTTTTCTACAGTGGATATGAAATACTGTTTATTAAATCTATGAAATCCTTTATTGCAACC
AGTGTCAGACTATGAATGAGGAAGAGATATATGATGTCCAAGATAAGCGTTCTCTTTTCCCTCTCGGATGGATTCATGTAAGTCATTTTATGTCTGTTTTCTTTTAGTTTTCAAGCTTGTTTATGTCTATTGCAG
>TRINITY_DN120333_c3_g1_i4 from sample A1 / Example unspliced isoform:TTGACTCCAATTGAAATACCAAGgttaggttctgaactgttttgcacagagagtagaaagtatggttattaatgattatgtgaaagctgtgagtgtgaacttgtgaagtatctagaacttggcagatcttggattttgttgtgaaactgaattggttttatgtttgaaaatgtttttgtcccgaggatttctactacttt
tcgttttcattatggtcatcctgatttattcttatttctttttctatatatctatttctgaaaagCTTTGAACAAAGTGGGCAAAATAATCTTCCGATATTAGAGGTGGGCAGTTTGTCAACATCTCAGAGCACTGGAACAGAATTATCTCTGTCATTGGAAGCTAATTCAAGGCCTCAAGTGAATGATTTGTCATCTCT
TTCTACATATGGCTCTGTTGAGACTCCTGTTCTTCCAAATATTGTGAGACAACCTTCTCCTCCGCCTGTTCTTGCTCCTGTACAAAACTTGCCTGCTGGATTGGACACATTGACGCATGTTTCTCATTTGAATGTGGCTGATCCTAGACCTGGGCCTGCAAAATCATTACAAGATGATCTGGCAAAGTCTAAAAGTCCTC
AATATGTACAAATATCAGTAAAAATGATGGATGATTTCATGAACCTTGCCAAGTCTAACACGCAAAAAAATTTAGAAACCTGCGGTGTACTTGCAGGGTCACTTAAAAAACGAACATTTTATGTCACAACTCTTATTATTCCAAAGCAGGAATCAACGTCTGATTCATGTCAGACTATGAATGAGGAAGAGATATATGAT
GTCCAAGATAAGCGTTCTCTTTTCCCTCTCGGATGGATTCATACACATCCTTCGCAGACTTGTTTTATGTCATCAGTTGATCTCCACACTCATTATTCATATCAGGTTATGTTACCCGAAGCTATTGCTATTGTTATGGCTCCCACAGACACAACAAAAACCTATGGTATTTTCCATTTATCGGATCCCGCGGGTGTGAA
TGTCATAAAACAATGCCAGCAGCGTGGCTTTCATCCTCATGAAGAACCTGCGGATGGTAGCCCGATATATGAACATTGTTCTCATGTTTATATAAACTCAAATCTAAAATATGATGTGATCGATCTTCGATAATCTAAAGGACTTATGATATTGAGGCATTTGGCCTCAATTCCTGAAAGCTACCAGTAATGATTTCATT
AGTGACGGTCACTGTTTGATTTCATCCCTTATATTTGTATGTGGTATGGATTTTAGTTCTTCATTTGTTCATTTCAAATGGGCACACACTTTGTGTAAACATTTACTGGAATGATTATTTTGACGGCGAAAAAAATAGATTGTCTTTACAAGATCTCTTATTGCAGAGTTAAAAATAACTGTGTTTGTTTCACCTGTATA
AGTTAGATTTGCTGGTCATTTCACCTTTATACTGATATAAATTGACGGGATTATTTGAATGCAAAAATAATAATGTATATGGTCGAACTGTTTGAAATTTTTCACTGTAAAATCCCTCTGGAAGACTTGGATAGCCCATGTTGATACGAGAAGCC